RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1628
(114 letters)
>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine
aminotransferase ArgD {Thermus thermophilus [TaxId:
274]}
Length = 387
Score = 66.7 bits (162), Expect = 7e-15
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 43 CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102
A E +Q GG +LR + + G + + DE+Q G GR G + +
Sbjct: 179 AAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAF---EHF 235
Query: 103 DIIPDIVT 110
I+PDI+T
Sbjct: 236 GIVPDILT 243
>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium
yoelii yoelii [TaxId: 73239]}
Length = 404
Score = 66.0 bits (160), Expect = 1e-14
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 43 CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102
CAF E +Q G I+P NYL+ VY + + VADEVQ G GR +
Sbjct: 188 CAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRT---GKLLCVHHY 244
Query: 103 DIIPDIVTV 111
++ PD++ +
Sbjct: 245 NVKPDVILL 253
>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 404
Score = 64.8 bits (157), Expect = 4e-14
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 43 CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102
AF E +Q G ++P YL V + + +ADE+Q G R G +
Sbjct: 190 AAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAV---DYE 246
Query: 103 DIIPDIVTV 111
++ PDIV +
Sbjct: 247 NVRPDIVLL 255
>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase
(aminotransferase) {Synechococcus sp., strain GR6
[TaxId: 1131]}
Length = 427
Score = 48.3 bits (114), Expect = 2e-08
Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 2/59 (3%)
Query: 43 CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQG 101
E + G I+P A +L + + + V DEV GF + + G
Sbjct: 201 AGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGFRI--AYGGVQEKFG 257
>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase,
GABA-aminotransferase {Escherichia coli [TaxId: 562]}
Length = 425
Score = 46.0 bits (108), Expect = 1e-07
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Query: 43 CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102
A E +Q GG +++ + G + +ADEVQ G GR +A + G
Sbjct: 200 AAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRT-GTLFAMEQMG- 257
Query: 103 DIIPDIVTV 111
+ PD+ T
Sbjct: 258 -VAPDLTTF 265
>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate
aminotransferase, BioA {Escherichia coli [TaxId: 562]}
Length = 429
Score = 40.0 bits (92), Expect = 2e-05
Identities = 14/56 (25%), Positives = 23/56 (41%)
Query: 43 CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQ 98
+Q GG + +L+ + K G + +ADE+ GFGR G +
Sbjct: 207 AVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEH 262
>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase
{Pseudomonas cepacia [TaxId: 292]}
Length = 431
Score = 39.7 bits (91), Expect = 2e-05
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 42 PCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQG 101
AF AE + S GG I P Y+ + + A G + + DE Q G GR GT + +
Sbjct: 202 LAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQR--- 258
Query: 102 DDIIPDI 108
D + PDI
Sbjct: 259 DGVTPDI 265
>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase)
{Proteus vulgaris [TaxId: 585]}
Length = 465
Score = 29.1 bits (64), Expect = 0.11
Identities = 12/86 (13%), Positives = 24/86 (27%), Gaps = 3/86 (3%)
Query: 30 LSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGR 89
L ++ A + + G + L+EVY+ + G V D +
Sbjct: 171 LKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENA 230
Query: 90 VGTHWW---AFQLQGDDIIPDIVTVV 112
++I D+
Sbjct: 231 YFIKARDPKYKNATIKEVIFDMYKYA 256
>d1biaa3 d.104.1.2 (A:64-270) Biotin repressor/biotin holoenzyme
synthetase, catalytic (central) domain {Escherichia
coli [TaxId: 562]}
Length = 207
Score = 26.1 bits (56), Expect = 1.0
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 75 GGVCVADEVQVGFGRVGTHWW 95
G C+A+ Q G GR G W+
Sbjct: 41 GDACIAEYQQAGRGRRGRKWF 61
>d3cmna1 d.92.1.16 (A:43-391) Uncharacterized protein Caur0242
{Chloroflexus aurantiacus [TaxId: 1108]}
Length = 346
Score = 24.5 bits (53), Expect = 3.8
Identities = 3/26 (11%), Positives = 10/26 (38%)
Query: 51 QSCGGQIIPPANYLREVYKHVRAAGG 76
+ G +++P N + + +
Sbjct: 257 NAVGRRLLPSFNQIEQQIAQRQRQRT 282
>d1y74a1 a.194.1.1 (A:17-73) Lin-7 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 57
Score = 22.8 bits (49), Expect = 4.8
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 16/38 (42%)
Query: 48 ESLQSCGGQIIPPA--------------NYLREVYKHV 71
E LQ G +PP + +REVY+ +
Sbjct: 15 ERLQRSGE--LPPQKLQALQRVLQSRFCSAIREVYEQL 50
>d1zl8a1 a.194.1.1 (A:4-53) Lin-7 {Caenorhabditis elegans [TaxId:
6239]}
Length = 50
Score = 22.4 bits (48), Expect = 5.5
Identities = 9/38 (23%), Positives = 13/38 (34%), Gaps = 16/38 (42%)
Query: 48 ESLQSCGGQIIPPA--------------NYLREVYKHV 71
E +Q G + A +REVY+ V
Sbjct: 14 EHVQKTGE--VNNAKLASLQQVLQSEFFGAVREVYETV 49
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease
protein MalF {Escherichia coli [TaxId: 562]}
Length = 248
Score = 23.7 bits (51), Expect = 6.0
Identities = 6/33 (18%), Positives = 13/33 (39%)
Query: 14 YIILLAVVHLFFERIFLSASLYPFLFLYPCAFF 46
+ I ++ IF + Y + ++YP
Sbjct: 30 FAITTLILSSAGLYIFANRKAYAWRYVYPGMAG 62
>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic
enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}
Length = 308
Score = 23.8 bits (51), Expect = 7.5
Identities = 4/20 (20%), Positives = 9/20 (45%)
Query: 55 GQIIPPANYLREVYKHVRAA 74
G++ P +RE+ +
Sbjct: 227 GRVYPQLKEIREISIQIAVE 246
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.332 0.147 0.495
Gapped
Lambda K H
0.267 0.0577 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 484,107
Number of extensions: 20294
Number of successful extensions: 65
Number of sequences better than 10.0: 1
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 18
Length of query: 114
Length of database: 2,407,596
Length adjustment: 72
Effective length of query: 42
Effective length of database: 1,419,036
Effective search space: 59599512
Effective search space used: 59599512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 47 (22.2 bits)