BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16285
(97 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WJV|A Chain A, Crystal Structure Of The Complex Between Human Nonsense
Mediated Decay Factors Upf1 And Upf2
pdb|2WJV|B Chain B, Crystal Structure Of The Complex Between Human Nonsense
Mediated Decay Factors Upf1 And Upf2
pdb|2WJY|A Chain A, Crystal Structure Of The Complex Between Human Nonsense
Mediated Decay Factors Upf1 And Upf2 Orthorhombic Form
Length = 800
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 20 LNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTN 79
LN Q A K L R ++IQGPPGTGKT + IV LAR +GP+L+ +N
Sbjct: 357 LNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIV------YHLARQGNGPVLVCAPSN 410
Query: 80 HALDQFVEGV 89
A+DQ E +
Sbjct: 411 IAVDQLTEKI 420
>pdb|2GJK|A Chain A, Structural And Functional Insights Into The Human Upf1
Helicase Core
pdb|2GK6|A Chain A, Structural And Functional Insights Into The Human Upf1
Helicase Core
pdb|2GK6|B Chain B, Structural And Functional Insights Into The Human Upf1
Helicase Core
pdb|2GK7|A Chain A, Structural And Functional Insights Into The Human Upf1
Helicase Core
Length = 624
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 20 LNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTN 79
LN Q A K L R ++IQGPPGTGKT + IV LAR +GP+L+ +N
Sbjct: 181 LNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIV------YHLARQGNGPVLVCAPSN 234
Query: 80 HALDQFVEGV 89
A+DQ E +
Sbjct: 235 IAVDQLTEKI 244
>pdb|2XZO|A Chain A, Upf1 Helicase - Rna Complex
pdb|2XZP|A Chain A, Upf1 Helicase
Length = 623
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 20 LNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTN 79
LN Q A K L R ++IQGPPGTGKT + IV LAR +GP+L+ +N
Sbjct: 180 LNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIV------YHLARQGNGPVLVCAPSN 233
Query: 80 HALDQFVEGV 89
A+DQ E +
Sbjct: 234 IAVDQLTEKI 243
>pdb|2XZL|A Chain A, Upf1-Rna Complex
Length = 802
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Query: 20 LNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTN 79
LN+ Q A L R ++IQGPPGTGKT + IV L++ IL+ +N
Sbjct: 361 LNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIV------YHLSKIHKDRILVCAPSN 414
Query: 80 HALDQF 85
A+D
Sbjct: 415 VAVDHL 420
>pdb|4B3F|X Chain X, Crystal Structure Of 1ghmbp2 Helicase
Length = 646
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 41/80 (51%), Gaps = 10/80 (12%)
Query: 20 LNTIQFEAYKAALT-REFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCY- 77
L+T Q EA AL+ +E AII GPPGTGKT + I+ +K G ++ C
Sbjct: 190 LDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQ--------GLKVLCCAP 241
Query: 78 TNHALDQFVEGVLKYTQNTL 97
+N A+D VE + Q L
Sbjct: 242 SNIAVDNLVERLALCKQRIL 261
>pdb|4B3G|A Chain A, Crystal Structure Of Ighmbp2 Helicase In Complex With Rna
pdb|4B3G|B Chain B, Crystal Structure Of Ighmbp2 Helicase In Complex With Rna
Length = 646
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 41/80 (51%), Gaps = 10/80 (12%)
Query: 20 LNTIQFEAYKAALT-REFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCY- 77
L+T Q EA AL+ +E AII GPPGTGKT + I+ +K G ++ C
Sbjct: 190 LDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQ--------GLKVLCCAP 241
Query: 78 TNHALDQFVEGVLKYTQNTL 97
+N A+D VE + Q L
Sbjct: 242 SNIAVDNLVERLALCKQRIL 261
>pdb|2AR7|A Chain A, Crystal Structure Of Human Adenylate Kinase 4, Ak4
pdb|2AR7|B Chain B, Crystal Structure Of Human Adenylate Kinase 4, Ak4
pdb|2BBW|A Chain A, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
Complex With Diguanosine Pentaphosphate
pdb|2BBW|B Chain B, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
Complex With Diguanosine Pentaphosphate
Length = 246
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 17 ELGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGF 58
+LG + F++ + L R A+I GPPG+GK V RI + F
Sbjct: 12 DLGTENLYFQSMASKLLR--AVILGPPGSGKGTVCQRIAQNF 51
>pdb|3B6E|A Chain A, Crystal Structure Of Human Dech-Box Rna Helicase Mda5
(Melanoma Differentiation-Associated Protein 5),
Dech-Domain
Length = 216
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 12 ANVQEELGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGP 71
A+ + EL L Q E + AL + II P G+GKT VA+ I + L K+ A S P
Sbjct: 26 ASPEPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKA---SEP 82
Query: 72 ILIVCYTNHAL 82
++ N L
Sbjct: 83 GKVIVLVNKVL 93
>pdb|4A2Q|A Chain A, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
pdb|4A2Q|B Chain B, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
pdb|4A2Q|D Chain D, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
pdb|4A2Q|E Chain E, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
Length = 797
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 24 QFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELAR 66
Q E + A+ + A+I P G+GKT+V++ I E +N R
Sbjct: 253 QIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGR 295
>pdb|4A2P|A Chain A, Structure Of Duck Rig-I Helicase Domain
pdb|4A36|A Chain A, Structure Of Duck Rig-I Helicase Domain Bound To 19-Mer
Dsrna And Atp Transition State Analogue
pdb|4A36|B Chain B, Structure Of Duck Rig-I Helicase Domain Bound To 19-Mer
Dsrna And Atp Transition State Analogue
Length = 556
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 24 QFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELAR 66
Q E + A+ + A+I P G+GKT+V++ I E +N R
Sbjct: 12 QIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGR 54
>pdb|4A2W|A Chain A, Structure Of Full-Length Duck Rig-I
pdb|4A2W|B Chain B, Structure Of Full-Length Duck Rig-I
Length = 936
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 24 QFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELAR 66
Q E + A+ + A+I P G+GKT+V++ I E +N R
Sbjct: 253 QIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGR 295
>pdb|4F91|B Chain B, Brr2 Helicase Region
Length = 1724
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 20 LNTIQFEAYKAAL-TREFAIIQGPPGTGKTYVAL 52
LN IQ + Y+AAL T E ++ P G GKT VAL
Sbjct: 80 LNRIQSKLYRAALETDENLLLCAPTGAGKTNVAL 113
>pdb|4F92|B Chain B, Brr2 Helicase Region S1087l
pdb|4F93|B Chain B, Brr2 Helicase Region S1087l, Mg-Atp
Length = 1724
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 20 LNTIQFEAYKAAL-TREFAIIQGPPGTGKTYVAL 52
LN IQ + Y+AAL T E ++ P G GKT VAL
Sbjct: 80 LNRIQSKLYRAALETDENLLLCAPTGAGKTNVAL 113
>pdb|4GL2|A Chain A, Structural Basis For Dsrna Duplex Backbone Recognition
By Mda5
pdb|4GL2|B Chain B, Structural Basis For Dsrna Duplex Backbone Recognition
By Mda5
Length = 699
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 18 LGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCY 77
L L Q E + AL + II P G GKT VA+ I + L K+ A S P ++
Sbjct: 6 LQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKA---SEPGKVIVL 62
Query: 78 TNHAL 82
N L
Sbjct: 63 VNKVL 67
>pdb|3NDP|A Chain A, Crystal Structure Of Human Ak4(L171p)
pdb|3NDP|B Chain B, Crystal Structure Of Human Ak4(L171p)
Length = 231
Score = 29.6 bits (65), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 37 AIIQGPPGTGKTYVALRIVEGF 58
A+I GPPG+GK V RI + F
Sbjct: 8 AVILGPPGSGKGTVCQRIAQNF 29
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 29.6 bits (65), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 10/58 (17%)
Query: 38 IIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKYTQN 95
I+ GPPGTGKT +A + +ARY + + + + + E + + QN
Sbjct: 54 ILWGPPGTGKTTLA----------EVIARYANADVERISAVTSGVKEIREAIERARQN 101
>pdb|2YKG|A Chain A, Structural Insights Into Rna Recognition By Rig-I
Length = 696
Score = 29.3 bits (64), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 24 QFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLK 60
Q E A+ + II P G GKT+V+L I E LK
Sbjct: 18 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLK 54
>pdb|3TMI|A Chain A, Structural Basis For Rna Recognition And Activation Of
Rig-I
Length = 695
Score = 29.3 bits (64), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 24 QFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLK 60
Q E A+ + II P G GKT+V+L I E LK
Sbjct: 17 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLK 53
>pdb|4AY2|A Chain A, Capturing 5' Tri-Phosphorylated Rna Duplex By Rig-I
Length = 687
Score = 29.3 bits (64), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 24 QFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLK 60
Q E A+ + II P G GKT+V+L I E LK
Sbjct: 9 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLK 45
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 29.3 bits (64), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 13/74 (17%)
Query: 5 LDAYDLSANVQEELGLNTIQFEAYKAALTR----EFAIIQGPPGTGKTYVALRIVEGFLK 60
LD + NV+++L L A +AA R + ++ GPPG GKT +A I
Sbjct: 24 LDEFIGQENVKKKLSL------ALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQT 77
Query: 61 NKELARYMSGPILI 74
N + SGP+L+
Sbjct: 78 NIHVT---SGPVLV 88
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 29.3 bits (64), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 13/74 (17%)
Query: 5 LDAYDLSANVQEELGLNTIQFEAYKAALTR----EFAIIQGPPGTGKTYVALRIVEGFLK 60
LD + NV+++L L A +AA R + ++ GPPG GKT +A I
Sbjct: 24 LDEFIGQENVKKKLSL------ALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQT 77
Query: 61 NKELARYMSGPILI 74
N + SGP+L+
Sbjct: 78 NIHVT---SGPVLV 88
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 29.3 bits (64), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 13/74 (17%)
Query: 5 LDAYDLSANVQEELGLNTIQFEAYKAALTR----EFAIIQGPPGTGKTYVALRIVEGFLK 60
LD + NV+++L L A +AA R + ++ GPPG GKT +A I
Sbjct: 24 LDEFIGQENVKKKLSL------ALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQT 77
Query: 61 NKELARYMSGPILI 74
N + SGP+L+
Sbjct: 78 NIHVT---SGPVLV 88
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 29.3 bits (64), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 13/74 (17%)
Query: 5 LDAYDLSANVQEELGLNTIQFEAYKAALTR----EFAIIQGPPGTGKTYVALRIVEGFLK 60
LD + NV+++L L A +AA R + ++ GPPG GKT +A I
Sbjct: 24 LDEFIGQENVKKKLSL------ALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQT 77
Query: 61 NKELARYMSGPILI 74
N + SGP+L+
Sbjct: 78 NIHVT---SGPVLV 88
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 29.3 bits (64), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 13/74 (17%)
Query: 5 LDAYDLSANVQEELGLNTIQFEAYKAALTR----EFAIIQGPPGTGKTYVALRIVEGFLK 60
LD + NV+++L L A +AA R + ++ GPPG GKT +A I
Sbjct: 24 LDEFIGQENVKKKLSL------ALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQT 77
Query: 61 NKELARYMSGPILI 74
N + SGP+L+
Sbjct: 78 NIHVT---SGPVLV 88
>pdb|3L07|A Chain A, Methylenetetrahydrofolate
DehydrogenaseMETHENYLTETRAHYDROFOLATE Cyclohydrolase,
Putative Bifunctional Protein Fold From Francisella
Tularensis.
pdb|3L07|B Chain B, Methylenetetrahydrofolate
DehydrogenaseMETHENYLTETRAHYDROFOLATE Cyclohydrolase,
Putative Bifunctional Protein Fold From Francisella
Tularensis
Length = 285
Score = 28.5 bits (62), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 4 ILDAYDLSANVQEELGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALR 53
++D LS +++E L +++ + A + AII G KTYVA +
Sbjct: 6 LIDGKSLSKDLKERLATQVQEYKHHTAITPKLVAIIVGNDPASKTYVASK 55
>pdb|3TBK|A Chain A, Mouse Rig-I Atpase Domain
Length = 555
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 38 IIQGPPGTGKTYVALRIVEGFLK 60
II P G GKT+V+L I E LK
Sbjct: 23 IICAPTGCGKTFVSLLICEHHLK 45
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 38 IIQGPPGTGKTYVALRIVE 56
++ GPPGTGKT +AL I +
Sbjct: 67 LLAGPPGTGKTALALAIAQ 85
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 13/74 (17%)
Query: 5 LDAYDLSANVQEELGLNTIQFEAYKAALTR----EFAIIQGPPGTGKTYVALRIVEGFLK 60
LD + NV+++L L A +AA R + ++ GPPG G+T +A I
Sbjct: 24 LDEFIGQENVKKKLSL------ALEAAKMRGEVLDHVLLAGPPGLGRTTLAHIIASELQT 77
Query: 61 NKELARYMSGPILI 74
N + SGP+L+
Sbjct: 78 NIHVT---SGPVLV 88
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With
Truncated Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With
Truncated Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With
Truncated Domains Ii
Length = 367
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 38 IIQGPPGTGKTYVALRIVE 56
++ GPPGTGKT +AL I +
Sbjct: 81 LLAGPPGTGKTALALAIAQ 99
>pdb|3NBX|X Chain X, Crystal Structure Of E. Coli Rava (Regulatory Atpase
Variant A) In Complex With Adp
Length = 500
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 30 AALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMS 69
AAL+ E + GPPG K+ +A R+ F + M+
Sbjct: 37 AALSGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMT 76
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence
Of Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence
Of Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence
Of Atpgammas
Length = 340
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 9/14 (64%), Positives = 13/14 (92%)
Query: 38 IIQGPPGTGKTYVA 51
++ GPPGTGK+Y+A
Sbjct: 73 LLYGPPGTGKSYLA 86
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 9/14 (64%), Positives = 13/14 (92%)
Query: 38 IIQGPPGTGKTYVA 51
++ GPPGTGK+Y+A
Sbjct: 55 LLYGPPGTGKSYLA 68
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 9/14 (64%), Positives = 13/14 (92%)
Query: 38 IIQGPPGTGKTYVA 51
++ GPPGTGK+Y+A
Sbjct: 64 LLYGPPGTGKSYLA 77
>pdb|2C9Y|A Chain A, Structure Of Human Adenylate Kinase 2
Length = 242
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 37 AIIQGPPGTGKTYVALRIVEGF 58
A++ GPPG GK A R+ E F
Sbjct: 19 AVLLGPPGAGKGTQAPRLAENF 40
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 9/14 (64%), Positives = 13/14 (92%)
Query: 38 IIQGPPGTGKTYVA 51
++ GPPGTGK+Y+A
Sbjct: 88 LLYGPPGTGKSYLA 101
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 16/93 (17%)
Query: 13 NVQEELGL-------NTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELA 65
+++EEL + N QF+A +T ++ GPPG GKT +A + N+
Sbjct: 17 DIREELTMAILAPVRNPDQFKAL-GLVTPAGVLLAGPPGCGKTLLAKAVA-----NESGL 70
Query: 66 RYMS--GPILIVCYTNHALDQFVEGVLKYTQNT 96
++S GP L+ Y + ++ V V + +N+
Sbjct: 71 NFISVKGPELLNMYVGES-ERAVRQVFQRAKNS 102
>pdb|3LLM|A Chain A, Crystal Structure Analysis Of A Rna Helicase
pdb|3LLM|B Chain B, Crystal Structure Analysis Of A Rna Helicase
Length = 235
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 8 YDLSANVQEELGLNTIQFEA--YKAALTREFAIIQGPPGTGK-TYVALRIVEGFLKNKEL 64
+DL A +QE L +FE+ +A II+G G GK T V I++ F++N
Sbjct: 48 HDLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRA 107
Query: 65 A 65
A
Sbjct: 108 A 108
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 9/11 (81%), Positives = 11/11 (100%)
Query: 41 GPPGTGKTYVA 51
GPPGTGK+Y+A
Sbjct: 52 GPPGTGKSYLA 62
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 10/15 (66%), Positives = 13/15 (86%)
Query: 37 AIIQGPPGTGKTYVA 51
A++ GPPGTGKT +A
Sbjct: 218 ALMYGPPGTGKTLLA 232
>pdb|1ZD8|A Chain A, Structure Of Human Adenylate Kinase 3 Like 1
Length = 227
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Query: 37 AIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPIL 73
A+I G PG+GK V+ RI F EL SG +L
Sbjct: 10 AVIMGAPGSGKGTVSSRITTHF----ELKHLSSGDLL 42
>pdb|1FNN|A Chain A, Crystal Structure Of Cdc6p From Pyrobaculum Aerophilum
pdb|1FNN|B Chain B, Crystal Structure Of Cdc6p From Pyrobaculum Aerophilum
Length = 389
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 37 AIIQGPPGTGKTYVALRIVEGFLKNKELARYM 68
A + G PGTGKT V LR + K+K AR++
Sbjct: 47 ATLLGRPGTGKT-VTLRKLWELYKDKTTARFV 77
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 26.6 bits (57), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 9/11 (81%), Positives = 11/11 (100%)
Query: 41 GPPGTGKTYVA 51
GPPGTGK+Y+A
Sbjct: 174 GPPGTGKSYLA 184
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 26.6 bits (57), Expect = 3.8, Method: Composition-based stats.
Identities = 10/14 (71%), Positives = 12/14 (85%)
Query: 38 IIQGPPGTGKTYVA 51
I+ GPPGTGKT +A
Sbjct: 186 ILYGPPGTGKTLLA 199
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 26.6 bits (57), Expect = 4.0, Method: Composition-based stats.
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 38 IIQGPPGTGKTYVA 51
++ GPPGTGKT +A
Sbjct: 242 LLYGPPGTGKTLIA 255
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 26.6 bits (57), Expect = 4.0, Method: Composition-based stats.
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 38 IIQGPPGTGKTYVA 51
++ GPPGTGKT +A
Sbjct: 242 LLYGPPGTGKTLIA 255
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 26.6 bits (57), Expect = 4.0, Method: Composition-based stats.
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 38 IIQGPPGTGKTYVA 51
++ GPPGTGKT +A
Sbjct: 242 LLYGPPGTGKTLIA 255
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 26.6 bits (57), Expect = 4.0, Method: Composition-based stats.
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 38 IIQGPPGTGKTYVA 51
++ GPPGTGKT +A
Sbjct: 242 LLYGPPGTGKTLIA 255
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 26.6 bits (57), Expect = 4.0, Method: Composition-based stats.
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 38 IIQGPPGTGKTYVA 51
++ GPPGTGKT +A
Sbjct: 242 LLYGPPGTGKTLIA 255
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 26.6 bits (57), Expect = 4.0, Method: Composition-based stats.
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 38 IIQGPPGTGKTYVA 51
++ GPPGTGKT +A
Sbjct: 242 LLYGPPGTGKTLIA 255
>pdb|2AK3|A Chain A, The Three-Dimensional Structure Of The Complex Between
Mitochondrial Matrix Adenylate Kinase And Its Substrate
Amp At 1.85 Angstroms Resolution
pdb|2AK3|B Chain B, The Three-Dimensional Structure Of The Complex Between
Mitochondrial Matrix Adenylate Kinase And Its Substrate
Amp At 1.85 Angstroms Resolution
Length = 226
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Query: 37 AIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPIL 73
A I G PG+GK V+ RI + F EL SG +L
Sbjct: 9 AAIMGAPGSGKGTVSSRITKHF----ELKHLSSGDLL 41
>pdb|4IJM|A Chain A, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
pdb|4IJM|B Chain B, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
pdb|4IJM|C Chain C, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
pdb|4IJM|D Chain D, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
pdb|4IJM|E Chain E, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
pdb|4IJM|F Chain F, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
Length = 512
Score = 26.2 bits (56), Expect = 5.4, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 41 GPPGTGKTYVALRIVEGFLKNKELA 65
G GTGKT + R VE NKE A
Sbjct: 275 GATGTGKTLLVSRFVENACANKERA 299
>pdb|1U9I|A Chain A, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|1U9I|B Chain B, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|1U9I|E Chain E, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|1U9I|F Chain F, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|2GBL|A Chain A, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
pdb|2GBL|B Chain B, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
pdb|2GBL|E Chain E, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
pdb|2GBL|F Chain F, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
pdb|3DVL|A Chain A, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
pdb|3DVL|B Chain B, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
pdb|3DVL|C Chain C, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
pdb|3DVL|D Chain D, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
pdb|3DVL|E Chain E, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
pdb|3DVL|F Chain F, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
Length = 519
Score = 26.2 bits (56), Expect = 5.4, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 41 GPPGTGKTYVALRIVEGFLKNKELA 65
G GTGKT + R VE NKE A
Sbjct: 288 GATGTGKTLLVSRFVENACANKERA 312
>pdb|1U9I|C Chain C, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|1U9I|D Chain D, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|2GBL|C Chain C, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
pdb|2GBL|D Chain D, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
Length = 519
Score = 26.2 bits (56), Expect = 5.4, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 41 GPPGTGKTYVALRIVEGFLKNKELA 65
G GTGKT + R VE NKE A
Sbjct: 288 GATGTGKTLLVSRFVENACANKERA 312
>pdb|1TF7|A Chain A, Crystal Structure Of Circadian Clock Protein Kaic
pdb|1TF7|B Chain B, Crystal Structure Of Circadian Clock Protein Kaic
pdb|1TF7|C Chain C, Crystal Structure Of Circadian Clock Protein Kaic
pdb|1TF7|D Chain D, Crystal Structure Of Circadian Clock Protein Kaic
pdb|1TF7|E Chain E, Crystal Structure Of Circadian Clock Protein Kaic
pdb|1TF7|F Chain F, Crystal Structure Of Circadian Clock Protein Kaic
Length = 525
Score = 26.2 bits (56), Expect = 5.4, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 41 GPPGTGKTYVALRIVEGFLKNKELA 65
G GTGKT + R VE NKE A
Sbjct: 288 GATGTGKTLLVSRFVENACANKERA 312
>pdb|4DUG|D Chain D, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
Length = 519
Score = 26.2 bits (56), Expect = 5.4, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 41 GPPGTGKTYVALRIVEGFLKNKELA 65
G GTGKT + R VE NKE A
Sbjct: 288 GATGTGKTLLVSRFVENACANKERA 312
>pdb|4DUG|A Chain A, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
pdb|4DUG|B Chain B, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
pdb|4DUG|C Chain C, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
pdb|4DUG|E Chain E, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
pdb|4DUG|F Chain F, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
Length = 519
Score = 26.2 bits (56), Expect = 5.4, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 41 GPPGTGKTYVALRIVEGFLKNKELA 65
G GTGKT + R VE NKE A
Sbjct: 288 GATGTGKTLLVSRFVENACANKERA 312
>pdb|3K0F|B Chain B, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0F|C Chain C, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0F|D Chain D, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0F|E Chain E, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0F|F Chain F, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 519
Score = 26.2 bits (56), Expect = 5.4, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 41 GPPGTGKTYVALRIVEGFLKNKELA 65
G GTGKT + R VE NKE A
Sbjct: 288 GATGTGKTLLVSRFVENACANKERA 312
>pdb|3K0F|A Chain A, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 519
Score = 26.2 bits (56), Expect = 5.4, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 41 GPPGTGKTYVALRIVEGFLKNKELA 65
G GTGKT + R VE NKE A
Sbjct: 288 GATGTGKTLLVSRFVENACANKERA 312
>pdb|3K0E|A Chain A, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
pdb|3K0E|B Chain B, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
pdb|3K0E|C Chain C, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
pdb|3K0E|D Chain D, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
pdb|3K0E|E Chain E, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
pdb|3K0E|F Chain F, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
Length = 519
Score = 26.2 bits (56), Expect = 5.4, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 41 GPPGTGKTYVALRIVEGFLKNKELA 65
G GTGKT + R VE NKE A
Sbjct: 288 GATGTGKTLLVSRFVENACANKERA 312
>pdb|3K0C|A Chain A, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0C|B Chain B, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0C|E Chain E, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0C|F Chain F, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 519
Score = 26.2 bits (56), Expect = 5.4, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 41 GPPGTGKTYVALRIVEGFLKNKELA 65
G GTGKT + R VE NKE A
Sbjct: 288 GATGTGKTLLVSRFVENACANKERA 312
>pdb|3K0A|B Chain B, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
pdb|3K0A|C Chain C, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
pdb|3K0A|D Chain D, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
pdb|3K0A|E Chain E, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
pdb|3K0A|F Chain F, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
Length = 519
Score = 26.2 bits (56), Expect = 5.4, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 41 GPPGTGKTYVALRIVEGFLKNKELA 65
G GTGKT + R VE NKE A
Sbjct: 288 GATGTGKTLLVSRFVENACANKERA 312
>pdb|3K0A|A Chain A, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
Length = 519
Score = 26.2 bits (56), Expect = 5.4, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 41 GPPGTGKTYVALRIVEGFLKNKELA 65
G GTGKT + R VE NKE A
Sbjct: 288 GATGTGKTLLVSRFVENACANKERA 312
>pdb|3K09|C Chain C, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
pdb|3K09|D Chain D, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
pdb|3K09|F Chain F, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
Length = 519
Score = 26.2 bits (56), Expect = 5.4, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 41 GPPGTGKTYVALRIVEGFLKNKELA 65
G GTGKT + R VE NKE A
Sbjct: 288 GATGTGKTLLVSRFVENACANKERA 312
>pdb|3K09|A Chain A, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
pdb|3K09|B Chain B, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
pdb|3K09|E Chain E, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
Length = 519
Score = 26.2 bits (56), Expect = 5.4, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 41 GPPGTGKTYVALRIVEGFLKNKELA 65
G GTGKT + R VE NKE A
Sbjct: 288 GATGTGKTLLVSRFVENACANKERA 312
>pdb|3JZM|A Chain A, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
pdb|3JZM|B Chain B, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
pdb|3JZM|C Chain C, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
pdb|3JZM|D Chain D, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
pdb|3JZM|E Chain E, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
pdb|3JZM|F Chain F, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
Length = 519
Score = 26.2 bits (56), Expect = 5.4, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 41 GPPGTGKTYVALRIVEGFLKNKELA 65
G GTGKT + R VE NKE A
Sbjct: 288 GATGTGKTLLVSRFVENACANKERA 312
>pdb|3S1A|B Chain B, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3S1A|C Chain C, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3S1A|D Chain D, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3S1A|E Chain E, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 525
Score = 26.2 bits (56), Expect = 5.4, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 41 GPPGTGKTYVALRIVEGFLKNKELA 65
G GTGKT + R VE NKE A
Sbjct: 288 GATGTGKTLLVSRFVENACANKERA 312
>pdb|3S1A|A Chain A, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3S1A|F Chain F, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 525
Score = 26.2 bits (56), Expect = 5.4, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 41 GPPGTGKTYVALRIVEGFLKNKELA 65
G GTGKT + R VE NKE A
Sbjct: 288 GATGTGKTLLVSRFVENACANKERA 312
>pdb|3K0C|C Chain C, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0C|D Chain D, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 519
Score = 26.2 bits (56), Expect = 5.4, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 41 GPPGTGKTYVALRIVEGFLKNKELA 65
G GTGKT + R VE NKE A
Sbjct: 288 GATGTGKTLLVSRFVENACANKERA 312
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 25.8 bits (55), Expect = 6.6, Method: Composition-based stats.
Identities = 12/20 (60%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Query: 38 IIQGPPGTGKTYVALRIVEG 57
++ GPPGTGKT +A R V G
Sbjct: 53 LLVGPPGTGKTLLA-RAVAG 71
>pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive
Factor (Nsf)
Length = 273
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 38 IIQGPPGTGKTYVALRIVE 56
+++GPP +GKT +A +I E
Sbjct: 67 LLEGPPHSGKTALAAKIAE 85
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
Query: 10 LSANVQEELGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFL 59
LS E L I E + E II GP G+GKT + LR + G L
Sbjct: 11 LSGKGYERFSLENINLE-----VNGEKVIILGPNGSGKTTL-LRAISGLL 54
>pdb|2FZ4|A Chain A, Crystal Structure Of The N-Terminal Half Of Archaeoglobus
Fulgidus Xpb
Length = 237
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 10/71 (14%)
Query: 17 ELGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVC 76
E+ L Q +A + L + I P G+GKT+VA+ + +S P LIV
Sbjct: 91 EISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINE----------LSTPTLIVV 140
Query: 77 YTNHALDQFVE 87
T +Q+ E
Sbjct: 141 PTLALAEQWKE 151
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 25.8 bits (55), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 38 IIQGPPGTGKTYVAL 52
+ GPPGTGKT A+
Sbjct: 42 LFSGPPGTGKTATAI 56
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 25.4 bits (54), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 38 IIQGPPGTGKTYVALRIVE 56
+++GPP +GKT +A +I E
Sbjct: 68 LLEGPPHSGKTALAAKIAE 86
>pdb|3B85|A Chain A, Crystal Structure Of Predicted Phosphate
Starvation-Induced Atpase Phoh2 From Corynebacterium
Glutamicum
pdb|3B85|B Chain B, Crystal Structure Of Predicted Phosphate
Starvation-Induced Atpase Phoh2 From Corynebacterium
Glutamicum
Length = 208
Score = 25.4 bits (54), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 41 GPPGTGKTYVALRIVEGFLKNKELARYM 68
GP G+GKTY+A L++K+++R +
Sbjct: 29 GPAGSGKTYLAXAKAVQALQSKQVSRII 56
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 25.4 bits (54), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 38 IIQGPPGTGKTYVAL 52
+ GPPGTGKT A+
Sbjct: 42 LFSGPPGTGKTATAI 56
>pdb|3ECC|A Chain A, Crystal Structure Of The Dnac Helicase Loader In Complex
With Adp-Bef3
Length = 185
Score = 25.4 bits (54), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 11/44 (25%), Positives = 22/44 (50%)
Query: 41 GPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQ 84
G PG GKT++A+ ++ + K + Y ++ H +D+
Sbjct: 45 GSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDE 88
>pdb|2FWR|A Chain A, Structure Of Archaeoglobus Fulgidis Xpb
pdb|2FWR|B Chain B, Structure Of Archaeoglobus Fulgidis Xpb
pdb|2FWR|C Chain C, Structure Of Archaeoglobus Fulgidis Xpb
pdb|2FWR|D Chain D, Structure Of Archaeoglobus Fulgidis Xpb
Length = 472
Score = 25.4 bits (54), Expect = 9.5, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 10/71 (14%)
Query: 17 ELGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVC 76
E+ L Q +A + L + I P G+GKT+VA+ + +S P LIV
Sbjct: 91 EISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAIN----------ELSTPTLIVV 140
Query: 77 YTNHALDQFVE 87
T +Q+ E
Sbjct: 141 PTLALAEQWKE 151
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,803,112
Number of Sequences: 62578
Number of extensions: 100268
Number of successful extensions: 447
Number of sequences better than 100.0: 88
Number of HSP's better than 100.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 376
Number of HSP's gapped (non-prelim): 90
length of query: 97
length of database: 14,973,337
effective HSP length: 63
effective length of query: 34
effective length of database: 11,030,923
effective search space: 375051382
effective search space used: 375051382
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)