BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16285
(97 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8R151|ZNFX1_MOUSE NFX1-type zinc finger-containing protein 1 OS=Mus musculus GN=Znfx1
PE=2 SV=3
Length = 1909
Score = 97.1 bits (240), Expect = 3e-20, Method: Composition-based stats.
Identities = 46/77 (59%), Positives = 58/77 (75%), Gaps = 2/77 (2%)
Query: 15 QEELGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARY--MSGPI 72
+E L L+ Q EA + ALT+E AIIQGPPGTGKTYV L+IV+ L NK + + + PI
Sbjct: 586 KEALKLDDSQMEALQFALTKELAIIQGPPGTGKTYVGLKIVQALLTNKSVWQINTQTFPI 645
Query: 73 LIVCYTNHALDQFVEGV 89
L+VCYTNHALDQF+EG+
Sbjct: 646 LVVCYTNHALDQFLEGI 662
>sp|Q9P2E3|ZNFX1_HUMAN NFX1-type zinc finger-containing protein 1 OS=Homo sapiens GN=ZNFX1
PE=1 SV=2
Length = 1918
Score = 96.3 bits (238), Expect = 4e-20, Method: Composition-based stats.
Identities = 46/77 (59%), Positives = 57/77 (74%), Gaps = 2/77 (2%)
Query: 15 QEELGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELAR--YMSGPI 72
+E L L+ Q EA + ALTRE AIIQGPPGTGKTYV L+IV+ L N+ + + PI
Sbjct: 593 KEALKLDDSQMEALQFALTRELAIIQGPPGTGKTYVGLKIVQALLTNESVWQISLQKFPI 652
Query: 73 LIVCYTNHALDQFVEGV 89
L+VCYTNHALDQF+EG+
Sbjct: 653 LVVCYTNHALDQFLEGI 669
>sp|O74465|HRR1_SCHPO Helicase required for RNAi-mediated heterochromatin assembly 1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=hrr1 PE=1 SV=2
Length = 999
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 46/67 (68%), Gaps = 3/67 (4%)
Query: 20 LNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTN 79
L++ Q +AY++ LT+ +IIQGPPGTGK++V L+ +E L+N PIL+ C TN
Sbjct: 372 LDSSQLKAYQSMLTKRLSIIQGPPGTGKSFVTLKAIETLLEN---THSHVLPILVACQTN 428
Query: 80 HALDQFV 86
HA+DQ +
Sbjct: 429 HAVDQIL 435
>sp|Q09820|RENT1_SCHPO ATP-dependent helicase upf1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=upf1 PE=3 SV=2
Length = 925
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 39/70 (55%)
Query: 20 LNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTN 79
LN Q EA +A L++ ++IQGPPGTGKT + +V + R P+L+ +N
Sbjct: 393 LNASQSEAVRAVLSKPLSLIQGPPGTGKTVTSASVVYHLATMQSRKRKSHSPVLVCAPSN 452
Query: 80 HALDQFVEGV 89
A+DQ E +
Sbjct: 453 VAVDQLAEKI 462
>sp|Q9EPU0|RENT1_MOUSE Regulator of nonsense transcripts 1 OS=Mus musculus GN=Upf1 PE=1
SV=2
Length = 1124
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 20 LNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTN 79
LN Q A K L R ++IQGPPGTGKT + IV LAR +GP+L+ +N
Sbjct: 477 LNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIV------YHLARQGNGPVLVCAPSN 530
Query: 80 HALDQFVEGV 89
A+DQ E +
Sbjct: 531 IAVDQLTEKI 540
>sp|Q92900|RENT1_HUMAN Regulator of nonsense transcripts 1 OS=Homo sapiens GN=UPF1 PE=1
SV=2
Length = 1129
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 20 LNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTN 79
LN Q A K L R ++IQGPPGTGKT + IV LAR +GP+L+ +N
Sbjct: 482 LNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIV------YHLARQGNGPVLVCAPSN 535
Query: 80 HALDQFVEGV 89
A+DQ E +
Sbjct: 536 IAVDQLTEKI 545
>sp|Q98TR3|RENT1_TAKRU Putative regulator of nonsense transcripts 1 OS=Takifugu rubripes
GN=rent1 PE=3 SV=1
Length = 1097
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 20 LNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTN 79
LN Q A K L R ++IQGPPGTGKT + IV L+R +GP+L+ +N
Sbjct: 453 LNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIV------YHLSRQGNGPVLVCAPSN 506
Query: 80 HALDQFVEGVLK 91
A+DQ E + K
Sbjct: 507 IAVDQLTEKIDK 518
>sp|O76512|RENT1_CAEEL Regulator of nonsense transcripts 1 OS=Caenorhabditis elegans
GN=smg-2 PE=1 SV=1
Length = 1069
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 20 LNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTN 79
LN+ Q +A K LTR ++IQGPPGTGKT V+ IV ++ E G +L+ +N
Sbjct: 446 LNSSQMQAVKQVLTRPLSLIQGPPGTGKTVVSATIVYHLVQKTE------GNVLVCSPSN 499
Query: 80 HALDQFVEGVLK 91
A+D E + K
Sbjct: 500 IAVDHLAEKIHK 511
>sp|Q9VYS3|RENT1_DROME Regulator of nonsense transcripts 1 homolog OS=Drosophila
melanogaster GN=Upf1 PE=1 SV=2
Length = 1180
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 20 LNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTN 79
LN Q A K AL R ++IQGPPGTGKT + IV +L + G +L+ +N
Sbjct: 452 LNRSQVYAVKHALQRPLSLIQGPPGTGKTVTSATIV------YQLVKLHGGTVLVCAPSN 505
Query: 80 HALDQFVEGV 89
A+DQ E +
Sbjct: 506 TAVDQLTEKI 515
>sp|O60306|AQR_HUMAN Intron-binding protein aquarius OS=Homo sapiens GN=AQR PE=1 SV=4
Length = 1485
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 10/75 (13%)
Query: 21 NTIQF-----EAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIV 75
NTIQF EA +A + ++ GPPGTGKT VA++I+ N R LIV
Sbjct: 798 NTIQFTHTQIEAIRAGMQPGLTMVVGPPGTGKTDVAVQIISNIYHNFPEQR-----TLIV 852
Query: 76 CYTNHALDQFVEGVL 90
++N AL+Q E ++
Sbjct: 853 THSNQALNQLFEKIM 867
>sp|Q8CFQ3|AQR_MOUSE Intron-binding protein aquarius OS=Mus musculus GN=Aqr PE=2 SV=2
Length = 1481
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 10/75 (13%)
Query: 21 NTIQF-----EAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIV 75
NTIQF EA +A + ++ GPPGTGKT VA++I+ N R LIV
Sbjct: 798 NTIQFTHTQIEAIRAGMQPGLTMVVGPPGTGKTDVAVQIISNIYHNFPEQR-----TLIV 852
Query: 76 CYTNHALDQFVEGVL 90
++N AL+Q E ++
Sbjct: 853 THSNQALNQLFEKIM 867
>sp|Q9FJR0|RENT1_ARATH Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana
GN=UPF1 PE=1 SV=2
Length = 1254
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 20 LNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTN 79
LN Q A K+ L + ++IQGPPGTGKT + IV +A+ G +L+ +N
Sbjct: 489 LNASQVNAVKSVLQKPISLIQGPPGTGKTVTSAAIV------YHMAKQGQGQVLVCAPSN 542
Query: 80 HALDQFVEGV 89
A+DQ E +
Sbjct: 543 VAVDQLAEKI 552
>sp|Q9BYK8|HELZ2_HUMAN Helicase with zinc finger domain 2 OS=Homo sapiens GN=HELZ2 PE=1 SV=6
Length = 2649
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 30/52 (57%)
Query: 20 LNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGP 71
LN Q A + AL + F +IQGPPGTGKT V L IV F K+ + GP
Sbjct: 2153 LNPSQNVAVREALEKPFTVIQGPPGTGKTIVGLHIVFWFHKSNQEQVQPGGP 2204
Score = 29.6 bits (65), Expect = 6.3, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Query: 38 IIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFV 86
+I GP GTGKTY + + E+ R +LI +TN A D ++
Sbjct: 541 LIYGPFGTGKTYTLA------MASLEVIRRPETKVLICTHTNSAADIYI 583
>sp|Q9HEH1|RENT1_NEUCR Regulator of nonsense transcripts 1 homolog OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=2E4.130 PE=3 SV=1
Length = 1093
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 20 LNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTN 79
LN Q A K L+ ++IQGPPGTGKT + I+ LA+ + +L+ +N
Sbjct: 456 LNASQIAAIKQVLSNPLSLIQGPPGTGKTVTSATII------YHLAKMSNSQVLVCAPSN 509
Query: 80 HALDQFVEGV 89
A+DQ E +
Sbjct: 510 VAVDQLCERI 519
>sp|Q00416|SEN1_YEAST Helicase SEN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SEN1 PE=1 SV=2
Length = 2231
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 14 VQEELGLNTIQFEAYKAALTRE-FAIIQGPPGTGKTYVALRIVEGFLKNK 62
V++ LNT Q EA ++++E F++IQGPPGTGKT L I+ FL K
Sbjct: 1329 VKKSYKLNTSQAEAIVNSVSKEGFSLIQGPPGTGKTKTILGIIGYFLSTK 1378
>sp|Q54I89|RENT1_DICDI Regulator of nonsense transcripts 1 OS=Dictyostelium discoideum
GN=upf1 PE=3 SV=1
Length = 1331
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 8/68 (11%)
Query: 20 LNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSG--PILIVCY 77
LN Q A LT ++IQGPPGTGKT ++ I+ L +Y+ G +L+
Sbjct: 537 LNESQISAVNKVLTAPLSLIQGPPGTGKTVISSFIIH------HLVKYVKGNDKVLVCTP 590
Query: 78 TNHALDQF 85
+N A+DQ
Sbjct: 591 SNVAIDQL 598
>sp|P34243|HCS1_YEAST DNA polymerase alpha-associated DNA helicase A OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HCS1 PE=1
SV=1
Length = 683
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 20 LNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFL-KNKELARYMSGPILIVCYT 78
LN Q A A+ + II GPPGTGKT+ + +++ L KN E + GP +
Sbjct: 208 LNDSQKTAINFAINNDLTIIHGPPGTGKTFTLIELIQQLLIKNPEERILICGP------S 261
Query: 79 NHALDQFVEGVLKYTQNTL 97
N ++D +E + N L
Sbjct: 262 NISVDTILERLTPLVPNNL 280
>sp|P30771|NAM7_YEAST ATP-dependent helicase NAM7 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=NAM7 PE=1 SV=1
Length = 971
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Query: 20 LNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTN 79
LN+ Q A L R ++IQGPPGTGKT + IV L++ IL+ +N
Sbjct: 409 LNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIV------YHLSKIHKDRILVCAPSN 462
Query: 80 HALDQF 85
A+D
Sbjct: 463 VAVDHL 468
>sp|O94247|HCS1_SCHPO DNA polymerase alpha-associated DNA helicase A
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=hcs1 PE=3 SV=1
Length = 660
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 10/70 (14%)
Query: 20 LNTIQFEAYKAALT-REFAIIQGPPGTGKTYVALRIVEGF-LKNKELARYMSGPILIVCY 77
LN Q +A K ++ +E ++I GPPGTGKT+ + I++ L+NK IL+
Sbjct: 210 LNASQKKAVKFSIAVKELSLIHGPPGTGKTHTLVEIIQQLVLRNKR--------ILVCGA 261
Query: 78 TNHALDQFVE 87
+N A+D V+
Sbjct: 262 SNLAVDNIVD 271
>sp|P32644|ECM32_YEAST Putative ATP-dependent RNA helicase ECM32 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=ECM32 PE=1
SV=1
Length = 1121
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 20 LNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTN 79
LN Q A + L I+QGPPGTGKT + + + R+ + PIL V +N
Sbjct: 649 LNRSQKTAVEHVLNNSITILQGPPGTGKTSTIEE-----IIIQVIERFHAFPILCVAASN 703
Query: 80 HALDQFVEGVLK 91
A+D E +++
Sbjct: 704 IAIDNIAEKIME 715
>sp|B6SFA4|MAA3_ARATH Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana GN=MAA3 PE=2
SV=1
Length = 818
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 6 DAYDLSANVQE--ELGLNTIQFEAYKAALTRE-FAIIQGPPGTGKTYVALRIV 55
+A+ +S + E LN Q EA L+R+ F +IQGPPGTGKT L I+
Sbjct: 242 EAWKISGPLNEFFNENLNKSQKEAIDVGLSRKSFVLIQGPPGTGKTQTILSIL 294
>sp|O94387|YGSA_SCHPO Uncharacterized ATP-dependent helicase C29A10.10c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC29A10.10c PE=3 SV=1
Length = 1944
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 11/89 (12%)
Query: 9 DLSANVQEELGLNTIQ-FEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARY 67
D + + G+N Q + Y +++ F +IQGPPGTGKT L ++ L +
Sbjct: 1260 DKKQKIMKSYGVNEPQAYAIYASSVNDGFTLIQGPPGTGKTKTILGMIGAVLTSSSQGLQ 1319
Query: 68 MSGP----------ILIVCYTNHALDQFV 86
+ P ILI +N A+D+ +
Sbjct: 1320 FNVPGQTRKTSKNKILICAPSNAAIDEIL 1348
>sp|D3ZG52|DNA2_RAT DNA replication ATP-dependent helicase/nuclease DNA2 OS=Rattus
norvegicus GN=Dna2 PE=3 SV=1
Length = 1059
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 18/97 (18%)
Query: 2 SSIL--DAYDLSANVQEELGLNTIQFEAYKAAL-TREFAIIQGPPGTGKTYVALRIVEGF 58
SS+L DA D AN+ + GLN Q +A K L ++++ +I G PGTGKT +V
Sbjct: 608 SSVLPHDAKDTVANILK--GLNKPQRQAMKKVLLSKDYTLIVGMPGTGKTTTICALV--- 662
Query: 59 LKNKELARYMSG---PILIVCYTNHALDQFVEGVLKY 92
R +S +L+ YT+ A+D + + K+
Sbjct: 663 -------RILSACGFSVLLTSYTHSAVDNILLKLAKF 692
>sp|P38935|SMBP2_HUMAN DNA-binding protein SMUBP-2 OS=Homo sapiens GN=IGHMBP2 PE=1 SV=3
Length = 993
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 10/70 (14%)
Query: 20 LNTIQFEAYKAALT-REFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCY- 77
L+T Q EA AL+ +E AII GPPGTGKT + I+ L G ++ C
Sbjct: 192 LDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEII--------LQAVKQGLKVLCCAP 243
Query: 78 TNHALDQFVE 87
+N A+D VE
Sbjct: 244 SNIAVDNLVE 253
>sp|Q6ZQJ5|DNA2_MOUSE DNA replication ATP-dependent helicase/nuclease DNA2 OS=Mus
musculus GN=Dna2 PE=2 SV=2
Length = 1062
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 18/97 (18%)
Query: 2 SSIL--DAYDLSANVQEELGLNTIQFEAYKAAL-TREFAIIQGPPGTGKTYVALRIVEGF 58
SS+L DA D AN+ + GLN Q +A K L ++++ +I G PGTGKT +V
Sbjct: 609 SSVLPHDAKDTVANILK--GLNKPQRQAMKRVLLSKDYTLIVGMPGTGKTTTICALV--- 663
Query: 59 LKNKELARYMSG---PILIVCYTNHALDQFVEGVLKY 92
R +S +L+ YT+ A+D + + K+
Sbjct: 664 -------RILSACGFSVLLTSYTHSAVDNILLKLAKF 693
>sp|Q8QHA5|DNA2_XENLA DNA replication ATP-dependent helicase/nuclease DNA2 OS=Xenopus
laevis GN=dna2 PE=1 SV=1
Length = 1053
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 14/95 (14%)
Query: 2 SSIL--DAYDLSANVQEELGLNTIQFEAYKAAL-TREFAIIQGPPGTGKTYVALRIVEGF 58
SSIL DA D+ A++ GLN Q +A K L ++++ +I G PGTGKT +V
Sbjct: 609 SSILPPDAKDIVASILR--GLNKPQKQAMKRVLLSKDYTLIVGMPGTGKTTTICTLVRIL 666
Query: 59 LKNKELARYMSG-PILIVCYTNHALDQFVEGVLKY 92
Y G +L+ YT+ A+D + + K+
Sbjct: 667 --------YACGFSVLLTSYTHSAVDNILLKLKKF 693
>sp|Q57568|Y104_METJA Uncharacterized ATP-dependent helicase MJ0104 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0104 PE=3 SV=1
Length = 663
Score = 37.7 bits (86), Expect = 0.019, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 13/87 (14%)
Query: 5 LDAYDLSANVQEELGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKEL 64
L+ YD + N ++L + KA L+R+ +I GPPGTGKT ++ +
Sbjct: 178 LEFYDKNLNESQKLAVK-------KAVLSRDLYLIHGPPGTGKTRTITEVI------VQE 224
Query: 65 ARYMSGPILIVCYTNHALDQFVEGVLK 91
++ +L +N A D +E ++K
Sbjct: 225 VKFNKHKVLATADSNIAADNILEYLIK 251
>sp|P40694|SMBP2_MOUSE DNA-binding protein SMUBP-2 OS=Mus musculus GN=Ighmbp2 PE=1 SV=1
Length = 993
Score = 37.0 bits (84), Expect = 0.032, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 10/70 (14%)
Query: 20 LNTIQFEAYKAALT-REFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCY- 77
L+ Q EA AL +E AII GPPGTGKT + I+ L G ++ C
Sbjct: 191 LDLSQKEAVSFALAQKELAIIHGPPGTGKTTTVVEII--------LQAVKQGLKVLCCAP 242
Query: 78 TNHALDQFVE 87
+N A+D VE
Sbjct: 243 SNIAVDNLVE 252
>sp|Q60560|SMBP2_MESAU DNA-binding protein SMUBP-2 OS=Mesocricetus auratus GN=IGHMBP2 PE=1
SV=1
Length = 989
Score = 37.0 bits (84), Expect = 0.033, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 35/71 (49%), Gaps = 10/71 (14%)
Query: 19 GLNTIQFEAYKAALT-REFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCY 77
L+ Q EA AL +E AII GPPGTGKT + I+ L G ++ C
Sbjct: 190 ALDPSQKEAVSFALAQKEVAIIHGPPGTGKTTTVVEII--------LQAVKQGLKILCCA 241
Query: 78 -TNHALDQFVE 87
+N A+D VE
Sbjct: 242 PSNVAVDNLVE 252
>sp|P0C6W6|R1AB_BCRP3 Replicase polyprotein 1ab OS=Bat coronavirus Rp3/2004 GN=rep PE=3
SV=1
Length = 7071
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 12/80 (15%)
Query: 13 NVQEELGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPI 72
N+ +E N Y+ ++++ +QGPPGTGK++ A+ + Y S I
Sbjct: 5556 NISDEFSSNVAN---YQKVGMQKYSTLQGPPGTGKSHFAIGLA---------LYYPSARI 5603
Query: 73 LIVCYTNHALDQFVEGVLKY 92
+ ++ A+D E LKY
Sbjct: 5604 VYTACSHAAVDALCEKALKY 5623
>sp|P0C6X7|R1AB_CVHSA Replicase polyprotein 1ab OS=Human SARS coronavirus GN=rep PE=1 SV=1
Length = 7073
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 12/80 (15%)
Query: 13 NVQEELGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPI 72
N+ +E N Y+ ++++ +QGPPGTGK++ A+ + Y S I
Sbjct: 5558 NISDEFSSNVAN---YQKVGMQKYSTLQGPPGTGKSHFAIGLA---------LYYPSARI 5605
Query: 73 LIVCYTNHALDQFVEGVLKY 92
+ ++ A+D E LKY
Sbjct: 5606 VYTACSHAAVDALCEKALKY 5625
>sp|P0C6V9|R1AB_BC279 Replicase polyprotein 1ab OS=Bat coronavirus 279/2005 GN=rep PE=3
SV=1
Length = 7079
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 12/80 (15%)
Query: 13 NVQEELGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPI 72
N+ +E N Y+ ++++ +QGPPGTGK++ A+ + Y S I
Sbjct: 5564 NISDEFSSNVAN---YQKVGMQKYSTLQGPPGTGKSHFAIGLA---------LYYPSARI 5611
Query: 73 LIVCYTNHALDQFVEGVLKY 92
+ ++ A+D E LKY
Sbjct: 5612 VYTACSHAAVDALCEKALKY 5631
>sp|P51530|DNA2_HUMAN DNA replication ATP-dependent helicase/nuclease DNA2 OS=Homo
sapiens GN=DNA2 PE=1 SV=3
Length = 1060
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 14/95 (14%)
Query: 2 SSIL--DAYDLSANVQEELGLNTIQFEAYKAAL-TREFAIIQGPPGTGKTYVALRIVEGF 58
SS+L DA D A + + GLN Q +A K L ++++ +I G PGTGKT +V
Sbjct: 608 SSVLPHDAKDTVACILK--GLNKPQRQAMKKVLLSKDYTLIVGMPGTGKTTTICTLVRIL 665
Query: 59 LKNKELARYMSG-PILIVCYTNHALDQFVEGVLKY 92
Y G +L+ YT+ A+D + + K+
Sbjct: 666 --------YACGFSVLLTSYTHSAVDNILLKLAKF 692
>sp|Q86AS0|Y4399_DICDI Probable helicase DDB_G0274399 OS=Dictyostelium discoideum
GN=DDB_G0274399 PE=3 SV=1
Length = 967
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 21 NTIQFEAYKAALT-REFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSG 70
N Q A +AL +IQGPPGTGKT+V L ++ L + + + SG
Sbjct: 336 NDSQLNALTSALEGNAITLIQGPPGTGKTHVILGLISVLLHSTIVPKVKSG 386
>sp|Q9EQN5|SMBP2_RAT DNA-binding protein SMUBP-2 OS=Rattus norvegicus GN=Ighmbp2 PE=1
SV=1
Length = 988
Score = 36.6 bits (83), Expect = 0.052, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 10/70 (14%)
Query: 20 LNTIQFEAYKAALT-REFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCY- 77
L+ Q EA AL +E AII GPPGTGKT + I+ L G ++ C
Sbjct: 191 LDPSQKEAVSFALAQKEVAIIHGPPGTGKTTTVVEII--------LQAVKQGLKVLCCAP 242
Query: 78 TNHALDQFVE 87
+N A+D VE
Sbjct: 243 SNIAVDNLVE 252
>sp|F6QXW0|DNA2_XENTR DNA replication ATP-dependent helicase/nuclease DNA2 OS=Xenopus
tropicalis GN=dna2 PE=3 SV=1
Length = 1048
Score = 36.2 bits (82), Expect = 0.058, Method: Composition-based stats.
Identities = 23/50 (46%), Positives = 33/50 (66%), Gaps = 5/50 (10%)
Query: 2 SSIL--DAYDLSANVQEELGLNTIQFEAYKAAL-TREFAIIQGPPGTGKT 48
SS+L DA D+ AN+ + GLN Q +A K L ++++ +I G PGTGKT
Sbjct: 609 SSVLPSDAKDIVANILK--GLNKPQKQAMKRVLLSKDYTLIVGMPGTGKT 656
>sp|Q92355|SEN1_SCHPO Helicase sen1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=sen1 PE=1 SV=1
Length = 1687
Score = 36.2 bits (82), Expect = 0.063, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 20 LNTIQFEAYKAALTRE-FAIIQGPPGTGKTYVALRIVEGFLKNKELARY 67
+N Q +A AL F +IQGPPGTGKT + I+ L +L+RY
Sbjct: 1130 VNEPQAKAIMCALDNNGFTLIQGPPGTGKTKTIIGIISALL--VDLSRY 1176
>sp|P0C6W3|R1AB_BCHK4 Replicase polyprotein 1ab OS=Bat coronavirus HKU4 GN=rep PE=3 SV=1
Length = 7119
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 12/79 (15%)
Query: 14 VQEELGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPIL 73
V EE + + F+ KA ++ + +QGPPGTGK++ A+ + Y + I+
Sbjct: 5612 VPEEFANHVVNFQ--KAGFSK-YVTVQGPPGTGKSHFAIGLA---------IYYPTARIV 5659
Query: 74 IVCYTNHALDQFVEGVLKY 92
++ A+D E KY
Sbjct: 5660 YTACSHAAVDALCEKAFKY 5678
>sp|P0C6W2|R1AB_BCHK3 Replicase polyprotein 1ab OS=Bat coronavirus HKU3 GN=rep PE=3 SV=1
Length = 7067
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 12/80 (15%)
Query: 13 NVQEELGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPI 72
N+ E N Y+ ++++ +QGPPGTGK++ A+ + Y S I
Sbjct: 5552 NISNEFSSNVAN---YQKIGMQKYSTLQGPPGTGKSHFAIGLA---------LYYPSARI 5599
Query: 73 LIVCYTNHALDQFVEGVLKY 92
+ ++ A+D E LKY
Sbjct: 5600 VYTACSHAAVDALCEKALKY 5619
>sp|E1BMP7|DNA2_BOVIN DNA replication ATP-dependent helicase/nuclease DNA2 OS=Bos taurus
GN=DNA2 PE=3 SV=3
Length = 1061
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 10/76 (13%)
Query: 19 GLNTIQFEAYKAAL-TREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSG-PILIVC 76
GLN Q +A K L ++++ +I G PGTGKT +V Y G +L+
Sbjct: 625 GLNKPQRQAMKKVLLSKDYTLIVGMPGTGKTTTICTLVRIL--------YACGFSVLLTS 676
Query: 77 YTNHALDQFVEGVLKY 92
YT+ A+D + + K+
Sbjct: 677 YTHSAVDNILLKLAKF 692
>sp|P0C6W4|R1AB_BCHK5 Replicase polyprotein 1ab OS=Bat coronavirus HKU5 GN=rep PE=3 SV=1
Length = 7182
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 12/79 (15%)
Query: 14 VQEELGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPIL 73
V EE + F+ KA ++ F +QGPPGTGK++ A+ + Y + ++
Sbjct: 5659 VPEEFANHVANFQ--KAGFSK-FVTVQGPPGTGKSHFAIGLA---------IYYPTARVV 5706
Query: 74 IVCYTNHALDQFVEGVLKY 92
++ A+D E KY
Sbjct: 5707 YTACSHAAVDALCEKAFKY 5725
>sp|P0C6W5|R1AB_BCHK9 Replicase polyprotein 1ab OS=Bat coronavirus HKU9 GN=rep PE=3 SV=1
Length = 6930
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 26/40 (65%), Gaps = 3/40 (7%)
Query: 13 NVQEELGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVAL 52
NV E N + ++ + ++R + +QGPPGTGK+++++
Sbjct: 5422 NVPESFASNVVHYQ--RVGMSR-YTTVQGPPGTGKSHLSI 5458
>sp|Q9BYX4|IFIH1_HUMAN Interferon-induced helicase C domain-containing protein 1 OS=Homo
sapiens GN=IFIH1 PE=1 SV=3
Length = 1025
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 12 ANVQEELGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGP 71
A+ + EL L Q E + AL + II P G+GKT VA+ I + L K+ A S P
Sbjct: 300 ASPEPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKA---SEP 356
Query: 72 ILIVCYTNHAL 82
++ N L
Sbjct: 357 GKVIVLVNKVL 367
>sp|P58274|LONB_THEVO Archaeal Lon protease OS=Thermoplasma volcanium (strain ATCC
51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1)
GN=TV0493 PE=3 SV=1
Length = 655
Score = 33.5 bits (75), Expect = 0.42, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 29 KAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGP 71
KAAL R I+ G PGTGK+ +A +V+ FL EL + P
Sbjct: 45 KAALQRRHVILIGEPGTGKSMLAQSMVD-FLPKSELEDILVFP 86
>sp|Q9HJ89|LONB_THEAC Archaeal Lon protease OS=Thermoplasma acidophilum (strain ATCC
25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
GN=Ta1081 PE=1 SV=1
Length = 657
Score = 33.5 bits (75), Expect = 0.42, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 29 KAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGP 71
KAAL R I+ G PGTGK+ +A +V+ FL EL + P
Sbjct: 45 KAALQRRHVILIGEPGTGKSMLAQSMVD-FLPKSELEDILVFP 86
>sp|Q8R5F7|IFIH1_MOUSE Interferon-induced helicase C domain-containing protein 1 OS=Mus
musculus GN=Ifih1 PE=1 SV=1
Length = 1025
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 17 ELGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIV 75
EL L Q E + AL + II P G+GKT VA+ I + L K+ A SG ++++
Sbjct: 306 ELQLRPYQMEVAQPALDGKNIIICLPTGSGKTRVAVYITKDHLDKKKQASE-SGKVIVL 363
>sp|Q5ZKG3|DNA2_CHICK DNA replication ATP-dependent helicase/nuclease DNA2 OS=Gallus
gallus GN=DNA2 PE=2 SV=2
Length = 992
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 14/78 (17%)
Query: 19 GLNTIQFEAYKAAL-TREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSG---PILI 74
GLN Q +A K L +R++ +I G PGTGKT +V R +S +L+
Sbjct: 594 GLNKPQKQAMKQVLLSRDYTLIVGMPGTGKTTTICALV----------RILSACGFSVLL 643
Query: 75 VCYTNHALDQFVEGVLKY 92
+T+ A+D + + K+
Sbjct: 644 TSFTHTAVDNILLKLAKF 661
>sp|P0C6W1|R1AB_BC133 Replicase polyprotein 1ab OS=Bat coronavirus 133/2005 GN=rep PE=3
SV=1
Length = 7126
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Query: 14 VQEELGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVAL 52
V EE + + F+ KA ++ + +QGPPGTGK++ A+
Sbjct: 5619 VPEEFANHVVNFQ--KAGFSK-YVTVQGPPGTGKSHFAI 5654
>sp|Q6C0B5|LONM_YARLI Lon protease homolog, mitochondrial OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=PIM1 PE=3 SV=1
Length = 1177
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 20 LNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSG 70
L I K LT + ++QGPPG GKT + I + N++ R+ G
Sbjct: 636 LEFIAVSRMKGGLTGKILLLQGPPGVGKTSIGKSIAKAL--NRQFYRFSVG 684
>sp|Q2NHD1|RADB_METST DNA repair and recombination protein RadB OS=Methanosphaera
stadtmanae (strain DSM 3091) GN=radB PE=3 SV=1
Length = 232
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 41 GPPGTGKTYVALRIVEGFLKNKELARYM 68
GPPG+GKT +AL+I+ KN A YM
Sbjct: 37 GPPGSGKTNIALKILYEATKNGSKAIYM 64
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.137 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,173,941
Number of Sequences: 539616
Number of extensions: 1276493
Number of successful extensions: 9122
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 83
Number of HSP's that attempted gapping in prelim test: 9005
Number of HSP's gapped (non-prelim): 193
length of query: 97
length of database: 191,569,459
effective HSP length: 66
effective length of query: 31
effective length of database: 155,954,803
effective search space: 4834598893
effective search space used: 4834598893
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)