Query psy16285
Match_columns 97
No_of_seqs 169 out of 1420
Neff 9.1
Searched_HMMs 29240
Date Fri Aug 16 17:30:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16285.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16285hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b3f_X DNA-binding protein smu 99.7 8.7E-18 3E-22 122.2 10.0 71 18-95 188-259 (646)
2 2gk6_A Regulator of nonsense t 99.6 3.3E-15 1.1E-19 108.5 10.5 71 17-93 178-248 (624)
3 2xzl_A ATP-dependent helicase 99.6 7.5E-15 2.6E-19 109.3 9.9 71 17-93 358-428 (802)
4 2wjy_A Regulator of nonsense t 99.6 1.3E-14 4.5E-19 107.9 10.4 72 17-94 354-425 (800)
5 3e1s_A Exodeoxyribonuclease V, 99.5 5.1E-13 1.8E-17 96.4 10.1 66 17-89 187-252 (574)
6 3b6e_A Interferon-induced heli 99.4 1E-12 3.5E-17 83.0 8.5 79 14-93 28-107 (216)
7 3upu_A ATP-dependent DNA helic 99.4 1.5E-12 5.2E-17 91.5 9.9 69 15-89 21-94 (459)
8 1rif_A DAR protein, DNA helica 99.4 1.3E-12 4.4E-17 86.4 8.9 71 18-94 112-182 (282)
9 3lfu_A DNA helicase II; SF1 he 99.4 7.4E-13 2.5E-17 95.7 7.9 70 19-93 9-78 (647)
10 2pl3_A Probable ATP-dependent 99.4 4.8E-12 1.7E-16 81.4 10.6 78 16-94 44-122 (236)
11 2gxq_A Heat resistant RNA depe 99.4 5.4E-12 1.9E-16 79.4 10.2 78 16-94 20-97 (207)
12 1t6n_A Probable ATP-dependent 99.4 5.9E-12 2E-16 80.2 10.0 72 19-94 36-107 (220)
13 2fz4_A DNA repair protein RAD2 99.4 5.2E-12 1.8E-16 82.1 9.8 69 15-93 89-157 (237)
14 1qde_A EIF4A, translation init 99.4 7.4E-12 2.5E-16 79.8 10.2 73 17-94 34-107 (224)
15 1vec_A ATP-dependent RNA helic 99.4 7.6E-12 2.6E-16 78.8 9.9 74 17-94 23-96 (206)
16 3ly5_A ATP-dependent RNA helic 99.4 6.9E-12 2.3E-16 82.4 10.1 76 19-94 76-151 (262)
17 3dkp_A Probable ATP-dependent 99.4 1.1E-11 3.8E-16 80.1 10.5 75 17-94 49-123 (245)
18 1q0u_A Bstdead; DEAD protein, 99.3 5.9E-12 2E-16 80.3 8.9 75 16-94 23-97 (219)
19 1w36_D RECD, exodeoxyribonucle 99.3 3.3E-12 1.1E-16 92.7 8.3 69 21-92 151-219 (608)
20 3bor_A Human initiation factor 99.3 5.9E-12 2E-16 81.4 8.5 73 18-94 51-123 (237)
21 3ber_A Probable ATP-dependent 99.3 1.6E-11 5.3E-16 80.1 10.4 73 17-94 63-136 (249)
22 3oiy_A Reverse gyrase helicase 99.3 9.9E-12 3.4E-16 85.6 9.9 71 17-94 19-89 (414)
23 3iuy_A Probable ATP-dependent 99.3 1.9E-11 6.5E-16 78.3 10.5 77 17-93 40-118 (228)
24 2oxc_A Probable ATP-dependent 99.3 1.5E-11 5.1E-16 79.1 9.9 71 19-94 46-117 (230)
25 1wrb_A DJVLGB; RNA helicase, D 99.3 4E-11 1.4E-15 77.9 11.8 78 17-94 43-125 (253)
26 2oca_A DAR protein, ATP-depend 99.3 6.4E-12 2.2E-16 88.6 8.3 71 17-93 111-181 (510)
27 1wp9_A ATP-dependent RNA helic 99.3 1.4E-11 4.9E-16 84.8 9.3 72 15-93 5-76 (494)
28 3tbk_A RIG-I helicase domain; 99.3 2.7E-11 9.2E-16 85.3 10.8 76 17-94 2-77 (555)
29 1hv8_A Putative ATP-dependent 99.3 2E-11 7E-16 81.9 9.7 74 16-94 25-99 (367)
30 3fe2_A Probable ATP-dependent 99.3 2.6E-11 9.1E-16 78.4 9.9 77 17-93 49-126 (242)
31 2z0m_A 337AA long hypothetical 99.3 4E-11 1.4E-15 79.8 10.7 69 16-94 13-81 (337)
32 1uaa_A REP helicase, protein ( 99.3 8.6E-12 2.9E-16 91.0 7.7 70 19-93 2-71 (673)
33 3pey_A ATP-dependent RNA helic 99.3 3.4E-11 1.2E-15 81.5 10.1 74 16-93 24-99 (395)
34 4a2p_A RIG-I, retinoic acid in 99.3 3.2E-11 1.1E-15 85.2 10.3 77 16-94 4-80 (556)
35 1s2m_A Putative ATP-dependent 99.3 3.1E-11 1.1E-15 82.4 9.7 73 18-94 42-114 (400)
36 2fwr_A DNA repair protein RAD2 99.3 2.4E-11 8.2E-16 85.0 9.2 69 16-94 90-158 (472)
37 1xti_A Probable ATP-dependent 99.3 3.8E-11 1.3E-15 81.5 9.7 72 18-93 29-100 (391)
38 2j0s_A ATP-dependent RNA helic 99.3 3.6E-11 1.2E-15 82.4 9.3 73 18-94 58-130 (410)
39 1pjr_A PCRA; DNA repair, DNA r 99.3 1.7E-11 5.8E-16 90.3 8.1 70 19-93 11-80 (724)
40 3eiq_A Eukaryotic initiation f 99.2 5.2E-11 1.8E-15 81.4 9.6 75 16-94 59-133 (414)
41 1fuu_A Yeast initiation factor 99.2 5.3E-11 1.8E-15 80.8 8.7 74 17-94 41-114 (394)
42 3l9o_A ATP-dependent RNA helic 99.2 9.4E-11 3.2E-15 89.8 10.9 73 15-94 180-252 (1108)
43 2xgj_A ATP-dependent RNA helic 99.2 1.5E-10 5E-15 88.1 11.7 72 16-94 83-154 (1010)
44 3fht_A ATP-dependent RNA helic 99.2 1.1E-10 3.6E-15 79.7 9.9 75 16-94 44-120 (412)
45 2ykg_A Probable ATP-dependent 99.2 1.8E-10 6E-15 83.8 11.2 78 15-94 9-86 (696)
46 4gl2_A Interferon-induced heli 99.2 3.6E-11 1.2E-15 87.5 7.5 79 15-94 3-82 (699)
47 2db3_A ATP-dependent RNA helic 99.2 1.9E-10 6.4E-15 80.2 10.5 78 17-94 76-154 (434)
48 4a4z_A Antiviral helicase SKI2 99.2 9.2E-11 3.2E-15 89.1 9.4 73 15-94 35-107 (997)
49 4a2q_A RIG-I, retinoic acid in 99.2 1.6E-10 5.5E-15 85.7 10.4 77 16-94 245-321 (797)
50 2i4i_A ATP-dependent RNA helic 99.2 2.3E-10 7.8E-15 78.3 10.3 79 16-94 34-126 (417)
51 3fmo_B ATP-dependent RNA helic 99.2 2.5E-10 8.6E-15 76.4 9.7 73 17-94 112-187 (300)
52 3i5x_A ATP-dependent RNA helic 99.2 2.3E-10 7.8E-15 81.6 9.8 77 17-93 92-170 (563)
53 3sqw_A ATP-dependent RNA helic 99.2 2.9E-10 1E-14 81.6 10.0 77 17-93 41-119 (579)
54 3h1t_A Type I site-specific re 99.1 7E-11 2.4E-15 84.9 6.1 79 16-94 175-261 (590)
55 3llm_A ATP-dependent RNA helic 99.1 3.2E-10 1.1E-14 73.2 8.7 74 17-93 59-133 (235)
56 1gm5_A RECG; helicase, replica 99.1 3E-10 1E-14 84.6 9.6 72 16-94 365-442 (780)
57 3fho_A ATP-dependent RNA helic 99.1 5.7E-11 2E-15 84.3 5.4 72 19-94 141-214 (508)
58 4a2w_A RIG-I, retinoic acid in 99.1 2.8E-10 9.5E-15 85.9 9.0 77 16-94 245-321 (936)
59 4ddu_A Reverse gyrase; topoiso 99.1 4.1E-10 1.4E-14 86.3 10.0 71 16-93 75-145 (1104)
60 2va8_A SSO2462, SKI2-type heli 99.1 3.4E-10 1.2E-14 83.0 8.8 70 18-93 29-99 (715)
61 3fmp_B ATP-dependent RNA helic 99.1 4.1E-10 1.4E-14 78.9 8.2 72 18-93 113-186 (479)
62 2zj8_A DNA helicase, putative 99.1 2.7E-10 9.1E-15 83.7 6.3 69 18-93 22-92 (720)
63 2p6r_A Afuhel308 helicase; pro 99.1 2.2E-10 7.4E-15 83.9 5.8 69 18-93 24-92 (702)
64 1gku_B Reverse gyrase, TOP-RG; 99.0 9.4E-10 3.2E-14 84.0 9.3 70 17-94 55-124 (1054)
65 2eyq_A TRCF, transcription-rep 99.0 1.4E-09 4.6E-14 83.8 10.1 72 16-94 600-677 (1151)
66 3u4q_A ATP-dependent helicase/ 99.0 6.1E-10 2.1E-14 86.0 7.9 75 15-92 6-80 (1232)
67 1z63_A Helicase of the SNF2/RA 99.0 6.2E-09 2.1E-13 73.2 10.4 73 16-94 34-110 (500)
68 3dmq_A RNA polymerase-associat 98.9 7.2E-09 2.5E-13 78.6 9.3 72 16-93 150-223 (968)
69 3ec2_A DNA replication protein 98.9 1.7E-08 5.7E-13 62.4 9.3 50 21-76 16-74 (180)
70 2v1x_A ATP-dependent DNA helic 98.9 4.6E-09 1.6E-13 76.1 7.1 68 17-94 42-109 (591)
71 4a15_A XPD helicase, ATP-depen 98.8 1.7E-08 5.8E-13 73.5 9.0 69 18-93 2-75 (620)
72 4f92_B U5 small nuclear ribonu 98.8 2.3E-08 7.8E-13 79.5 10.1 72 17-93 924-996 (1724)
73 2w00_A HSDR, R.ECOR124I; ATP-b 98.8 3.6E-09 1.2E-13 80.8 5.2 73 17-94 269-355 (1038)
74 3mwy_W Chromo domain-containin 98.8 2.8E-08 9.5E-13 74.0 9.3 73 17-94 234-310 (800)
75 1oyw_A RECQ helicase, ATP-depe 98.8 8.7E-09 3E-13 73.6 6.3 67 18-94 24-90 (523)
76 2vl7_A XPD; helicase, unknown 98.7 4.7E-08 1.6E-12 70.0 8.4 67 17-93 5-75 (540)
77 3crv_A XPD/RAD3 related DNA he 98.7 4.8E-08 1.6E-12 70.1 8.1 66 18-93 2-71 (551)
78 1z3i_X Similar to RAD54-like; 98.7 8.2E-08 2.8E-12 70.0 9.4 76 18-94 54-138 (644)
79 2v6i_A RNA helicase; membrane, 98.7 2.4E-08 8.1E-13 69.7 5.6 50 34-90 2-52 (431)
80 2qgz_A Helicase loader, putati 98.7 1.2E-07 4E-12 63.8 8.7 36 34-76 152-188 (308)
81 2w58_A DNAI, primosome compone 98.7 1.6E-07 5.6E-12 58.8 8.9 35 35-76 55-89 (202)
82 2z83_A Helicase/nucleoside tri 98.7 1.2E-08 4.2E-13 71.7 4.0 54 32-92 19-73 (459)
83 1yks_A Genome polyprotein [con 98.7 2.1E-08 7.2E-13 70.2 4.9 55 32-93 6-61 (440)
84 4f92_B U5 small nuclear ribonu 98.7 1.2E-07 4.1E-12 75.5 9.1 78 17-94 77-159 (1724)
85 2wv9_A Flavivirin protease NS2 98.6 1.8E-08 6.1E-13 74.1 3.4 61 26-93 227-294 (673)
86 2xau_A PRE-mRNA-splicing facto 98.6 1.6E-07 5.5E-12 69.9 8.2 67 23-93 97-164 (773)
87 3bos_A Putative DNA replicatio 98.6 6.8E-07 2.3E-11 56.7 9.3 40 22-61 37-79 (242)
88 2jlq_A Serine protease subunit 98.5 3.7E-08 1.3E-12 69.0 2.9 59 27-92 11-71 (451)
89 2whx_A Serine protease/ntpase/ 98.5 7.3E-08 2.5E-12 70.2 4.4 58 27-91 179-237 (618)
90 2kjq_A DNAA-related protein; s 98.5 1.8E-07 6.2E-12 56.7 5.4 41 20-61 23-63 (149)
91 2dr3_A UPF0273 protein PH0284; 98.5 2.4E-07 8.2E-12 59.3 6.1 53 33-93 22-74 (247)
92 1c4o_A DNA nucleotide excision 98.5 7.4E-07 2.5E-11 65.4 9.2 68 17-94 6-78 (664)
93 3te6_A Regulatory protein SIR3 98.5 1.8E-07 6.3E-12 63.3 5.1 43 19-61 23-72 (318)
94 1l8q_A Chromosomal replication 98.5 1.2E-06 4.3E-11 58.5 9.1 35 35-76 38-72 (324)
95 1w36_B RECB, exodeoxyribonucle 98.4 5.4E-07 1.9E-11 69.6 7.1 59 35-93 17-80 (1180)
96 2chg_A Replication factor C sm 98.4 2E-06 6.7E-11 53.6 8.5 45 17-61 18-65 (226)
97 2zts_A Putative uncharacterize 98.4 4.9E-07 1.7E-11 57.8 5.7 53 34-93 30-82 (251)
98 3n70_A Transport activator; si 98.4 2.2E-07 7.5E-12 55.8 3.7 28 33-60 23-50 (145)
99 2w0m_A SSO2452; RECA, SSPF, un 98.4 1.1E-06 3.8E-11 55.5 7.0 51 33-91 22-72 (235)
100 2d7d_A Uvrabc system protein B 98.4 2.6E-06 9.1E-11 62.4 9.7 73 12-94 5-82 (661)
101 1jbk_A CLPB protein; beta barr 98.4 1.2E-06 4E-11 53.4 6.7 43 18-60 24-69 (195)
102 3vkw_A Replicase large subunit 98.4 4.3E-07 1.5E-11 64.0 4.9 46 35-92 162-207 (446)
103 3o8b_A HCV NS3 protease/helica 98.4 7.7E-08 2.6E-12 70.7 1.1 62 22-93 220-281 (666)
104 2v1u_A Cell division control p 98.4 1.4E-06 4.7E-11 58.8 7.1 46 16-61 19-71 (387)
105 4b4t_M 26S protease regulatory 98.4 8.6E-07 2.9E-11 62.3 6.2 24 35-58 216-239 (434)
106 4b4t_J 26S protease regulatory 98.3 9E-07 3.1E-11 61.7 6.1 24 35-58 183-206 (405)
107 4b4t_K 26S protease regulatory 98.3 1E-06 3.4E-11 61.9 6.3 24 35-58 207-230 (428)
108 1tf5_A Preprotein translocase 98.3 5.5E-06 1.9E-10 62.2 10.1 68 17-93 81-148 (844)
109 2qz4_A Paraplegin; AAA+, SPG7, 98.3 1.9E-06 6.5E-11 55.6 6.8 24 35-58 40-63 (262)
110 2fsf_A Preprotein translocase 98.3 4E-06 1.4E-10 63.0 9.1 69 17-94 72-140 (853)
111 4b4t_I 26S protease regulatory 98.3 2.7E-06 9.3E-11 59.8 7.8 24 35-58 217-240 (437)
112 2p65_A Hypothetical protein PF 98.3 1.3E-06 4.6E-11 53.2 5.6 43 18-60 24-69 (187)
113 3rc3_A ATP-dependent RNA helic 98.3 1.8E-06 6.3E-11 63.6 6.8 52 32-94 153-204 (677)
114 2z4s_A Chromosomal replication 98.3 4.6E-06 1.6E-10 58.5 8.5 37 35-76 131-167 (440)
115 4b4t_L 26S protease subunit RP 98.3 1.1E-06 3.8E-11 61.8 5.1 24 35-58 216-239 (437)
116 3syl_A Protein CBBX; photosynt 98.2 1.5E-06 5.3E-11 57.4 5.3 26 36-61 69-94 (309)
117 1njg_A DNA polymerase III subu 98.2 2.5E-06 8.4E-11 53.6 6.0 44 17-60 24-71 (250)
118 3h4m_A Proteasome-activating n 98.2 2.5E-06 8.5E-11 55.9 6.2 24 35-58 52-75 (285)
119 2orw_A Thymidine kinase; TMTK, 98.2 1.6E-06 5.4E-11 54.3 4.9 38 34-78 3-40 (184)
120 1in4_A RUVB, holliday junction 98.2 2.5E-06 8.6E-11 57.6 6.2 24 35-58 52-75 (334)
121 3bh0_A DNAB-like replicative h 98.2 2.6E-06 9.1E-11 57.2 6.1 50 34-91 68-117 (315)
122 2qby_B CDC6 homolog 3, cell di 98.2 8.6E-06 2.9E-10 55.1 8.6 46 16-61 20-72 (384)
123 1fnn_A CDC6P, cell division co 98.2 6.7E-06 2.3E-10 55.6 8.0 45 16-60 17-70 (389)
124 2bjv_A PSP operon transcriptio 98.2 2E-06 7E-11 55.9 5.1 26 34-59 29-54 (265)
125 2r62_A Cell division protease 98.2 9.2E-07 3.2E-11 57.5 3.5 24 35-58 45-68 (268)
126 4b4t_H 26S protease regulatory 98.2 2.4E-06 8.2E-11 60.5 5.7 24 35-58 244-267 (467)
127 3hws_A ATP-dependent CLP prote 98.2 2.1E-06 7.3E-11 58.4 5.3 25 34-58 51-75 (363)
128 3t15_A Ribulose bisphosphate c 98.2 8.8E-07 3E-11 58.9 3.3 23 36-58 38-60 (293)
129 1d2n_A N-ethylmaleimide-sensit 98.2 3.6E-06 1.2E-10 55.0 6.2 24 35-58 65-88 (272)
130 1nkt_A Preprotein translocase 98.2 9.7E-06 3.3E-10 61.3 9.1 68 17-93 109-176 (922)
131 3b9p_A CG5977-PA, isoform A; A 98.2 2.5E-06 8.7E-11 56.2 5.5 25 34-58 54-78 (297)
132 1sxj_A Activator 1 95 kDa subu 98.2 2.8E-06 9.5E-11 60.5 5.9 43 16-58 39-101 (516)
133 3eie_A Vacuolar protein sortin 98.2 3.3E-06 1.1E-10 56.6 6.0 24 35-58 52-75 (322)
134 1hqc_A RUVB; extended AAA-ATPa 98.2 4.2E-06 1.5E-10 55.6 6.4 42 17-58 13-62 (324)
135 2ipc_A Preprotein translocase 98.2 9.4E-06 3.2E-10 61.6 8.7 70 16-94 76-145 (997)
136 1iqp_A RFCS; clamp loader, ext 98.2 8.5E-06 2.9E-10 53.9 7.7 43 18-60 27-72 (327)
137 1tue_A Replication protein E1; 98.2 1.1E-06 3.8E-11 56.4 3.2 24 36-59 60-83 (212)
138 1p9r_A General secretion pathw 98.2 4.3E-06 1.5E-10 58.5 6.4 45 16-60 147-193 (418)
139 3pfi_A Holliday junction ATP-d 98.2 5.1E-06 1.7E-10 55.7 6.6 42 17-58 30-79 (338)
140 2ehv_A Hypothetical protein PH 98.2 4.4E-06 1.5E-10 53.4 6.0 28 32-59 28-55 (251)
141 2b8t_A Thymidine kinase; deoxy 98.2 2.8E-06 9.7E-11 54.9 5.0 38 34-78 12-49 (223)
142 1cr0_A DNA primase/helicase; R 98.2 6.4E-06 2.2E-10 54.5 6.9 39 33-77 34-72 (296)
143 2r44_A Uncharacterized protein 98.2 1.5E-06 5E-11 58.3 3.8 37 22-58 33-70 (331)
144 1ofh_A ATP-dependent HSL prote 98.1 2.7E-06 9.3E-11 56.0 4.8 25 34-58 50-74 (310)
145 2qby_A CDC6 homolog 1, cell di 98.1 4.1E-06 1.4E-10 56.4 5.7 46 16-61 20-72 (386)
146 3u61_B DNA polymerase accessor 98.1 7.6E-06 2.6E-10 54.6 6.9 43 16-58 26-72 (324)
147 1lv7_A FTSH; alpha/beta domain 98.1 5.3E-06 1.8E-10 53.7 6.0 24 35-58 46-69 (257)
148 2r8r_A Sensor protein; KDPD, P 98.1 4.3E-06 1.5E-10 54.2 5.2 34 36-76 8-41 (228)
149 1sxj_E Activator 1 40 kDa subu 98.1 4.5E-06 1.5E-10 56.1 5.5 56 3-60 3-62 (354)
150 3co5_A Putative two-component 98.1 1.5E-06 5E-11 52.1 2.8 24 33-56 26-49 (143)
151 3b85_A Phosphate starvation-in 98.1 4.6E-06 1.6E-10 53.2 5.2 37 21-57 9-45 (208)
152 1sxj_C Activator 1 40 kDa subu 98.1 7.9E-06 2.7E-10 55.0 6.6 39 21-59 30-71 (340)
153 4fcw_A Chaperone protein CLPB; 98.1 4.1E-06 1.4E-10 55.3 5.1 27 35-61 48-74 (311)
154 3cf0_A Transitional endoplasmi 98.1 1.8E-06 6.1E-11 57.5 3.2 24 35-58 50-73 (301)
155 1xwi_A SKD1 protein; VPS4B, AA 98.1 1.9E-06 6.6E-11 58.0 3.2 24 35-58 46-69 (322)
156 3vaa_A Shikimate kinase, SK; s 98.1 3.1E-06 1E-10 53.1 3.9 26 33-58 24-49 (199)
157 2chq_A Replication factor C sm 98.1 7.8E-06 2.7E-10 53.9 6.1 43 18-60 19-64 (319)
158 1nlf_A Regulatory protein REPA 98.1 1E-05 3.6E-10 53.1 6.6 59 33-92 29-90 (279)
159 1sxj_D Activator 1 41 kDa subu 98.1 5.1E-06 1.7E-10 55.7 5.2 38 23-60 44-84 (353)
160 3uk6_A RUVB-like 2; hexameric 98.1 2.4E-06 8.1E-11 57.8 3.5 25 35-59 71-95 (368)
161 3kb2_A SPBC2 prophage-derived 98.1 3.1E-06 1.1E-10 51.2 3.7 23 36-58 3-25 (173)
162 3hr8_A Protein RECA; alpha and 98.1 3.7E-06 1.3E-10 57.8 4.3 37 34-77 61-97 (356)
163 2qp9_X Vacuolar protein sortin 98.1 3.3E-06 1.1E-10 57.6 3.9 24 35-58 85-108 (355)
164 3trf_A Shikimate kinase, SK; a 98.1 3.7E-06 1.3E-10 51.8 3.9 25 34-58 5-29 (185)
165 1qhx_A CPT, protein (chloramph 98.1 2.8E-06 9.5E-11 52.0 3.2 24 35-58 4-27 (178)
166 3vfd_A Spastin; ATPase, microt 98.0 1.3E-05 4.3E-10 55.1 6.7 24 35-58 149-172 (389)
167 2c9o_A RUVB-like 1; hexameric 98.0 3.4E-06 1.2E-10 59.2 3.9 24 35-58 64-87 (456)
168 1kag_A SKI, shikimate kinase I 98.0 3.5E-06 1.2E-10 51.3 3.5 25 34-58 4-28 (173)
169 3cpe_A Terminase, DNA packagin 98.0 5E-05 1.7E-09 55.0 10.0 74 16-94 160-233 (592)
170 3pvs_A Replication-associated 98.0 5.9E-06 2E-10 58.2 5.0 24 35-58 51-74 (447)
171 2px0_A Flagellar biosynthesis 98.0 8E-06 2.7E-10 54.6 5.4 38 34-77 105-142 (296)
172 2zr9_A Protein RECA, recombina 98.0 7.7E-06 2.6E-10 55.9 5.3 37 34-77 61-97 (349)
173 2q6t_A DNAB replication FORK h 98.0 1.1E-05 3.9E-10 56.4 6.2 49 34-89 200-248 (444)
174 2r6a_A DNAB helicase, replicat 98.0 9.8E-06 3.4E-10 56.9 5.9 49 34-89 203-251 (454)
175 4a1f_A DNAB helicase, replicat 98.0 9.3E-06 3.2E-10 55.4 5.5 49 33-89 45-93 (338)
176 1nks_A Adenylate kinase; therm 98.0 8.1E-06 2.8E-10 50.2 4.8 25 36-60 3-27 (194)
177 3jvv_A Twitching mobility prot 98.0 2.1E-05 7.3E-10 53.9 7.2 29 33-61 122-150 (356)
178 1ixz_A ATP-dependent metallopr 98.0 3.4E-06 1.2E-10 54.5 3.1 23 36-58 51-73 (254)
179 2yvu_A Probable adenylyl-sulfa 98.0 9.7E-06 3.3E-10 50.1 5.0 28 34-61 13-40 (186)
180 2x8a_A Nuclear valosin-contain 98.0 3.4E-06 1.2E-10 55.7 3.1 23 36-58 46-68 (274)
181 1u94_A RECA protein, recombina 98.0 1.1E-05 3.6E-10 55.4 5.6 37 34-77 63-99 (356)
182 1n0w_A DNA repair protein RAD5 98.0 7.3E-06 2.5E-10 52.2 4.5 27 34-60 24-50 (243)
183 4eun_A Thermoresistant glucoki 98.0 5.7E-06 2E-10 51.9 3.9 26 33-58 28-53 (200)
184 1kht_A Adenylate kinase; phosp 98.0 5.9E-06 2E-10 50.8 3.9 26 34-59 3-28 (192)
185 3kl4_A SRP54, signal recogniti 98.0 7.6E-06 2.6E-10 57.5 4.8 34 36-76 99-132 (433)
186 3iij_A Coilin-interacting nucl 98.0 6.4E-06 2.2E-10 50.6 4.0 25 34-58 11-35 (180)
187 3bgw_A DNAB-like replicative h 98.0 6.6E-06 2.3E-10 57.8 4.5 48 34-89 197-244 (444)
188 1um8_A ATP-dependent CLP prote 98.0 4.5E-06 1.5E-10 57.0 3.5 25 34-58 72-96 (376)
189 1w5s_A Origin recognition comp 98.0 1.2E-05 4.2E-10 54.8 5.6 45 16-60 22-78 (412)
190 3nbx_X ATPase RAVA; AAA+ ATPas 98.0 5E-06 1.7E-10 59.4 3.7 28 31-58 38-65 (500)
191 1vma_A Cell division protein F 98.0 1.1E-05 3.6E-10 54.4 5.2 35 35-76 105-139 (306)
192 1zp6_A Hypothetical protein AT 98.0 3.6E-06 1.2E-10 52.0 2.6 25 33-57 8-32 (191)
193 1jr3_A DNA polymerase III subu 98.0 1.9E-05 6.4E-10 53.3 6.3 42 18-59 18-63 (373)
194 1g8p_A Magnesium-chelatase 38 98.0 7.3E-06 2.5E-10 54.9 4.2 26 34-59 45-70 (350)
195 1via_A Shikimate kinase; struc 98.0 6.8E-06 2.3E-10 50.3 3.7 23 36-58 6-28 (175)
196 3d8b_A Fidgetin-like protein 1 98.0 1.3E-05 4.5E-10 54.6 5.4 24 35-58 118-141 (357)
197 1kgd_A CASK, peripheral plasma 98.0 7E-06 2.4E-10 50.7 3.8 26 33-58 4-29 (180)
198 1xx6_A Thymidine kinase; NESG, 98.0 1.3E-05 4.6E-10 50.5 5.1 39 34-79 8-46 (191)
199 2cvh_A DNA repair and recombin 98.0 1E-05 3.5E-10 50.8 4.6 34 34-77 20-53 (220)
200 3pxg_A Negative regulator of g 98.0 1.9E-05 6.4E-10 55.7 6.3 43 19-61 183-228 (468)
201 3dm5_A SRP54, signal recogniti 98.0 1E-05 3.6E-10 57.0 5.0 34 36-76 102-135 (443)
202 2vhj_A Ntpase P4, P4; non- hyd 97.9 6.7E-06 2.3E-10 56.0 3.8 24 34-57 123-146 (331)
203 3tr0_A Guanylate kinase, GMP k 97.9 7.4E-06 2.5E-10 51.0 3.7 26 33-58 6-31 (205)
204 3cmu_A Protein RECA, recombina 97.9 2.1E-05 7.2E-10 63.6 7.0 39 33-78 1426-1464(2050)
205 1sxj_B Activator 1 37 kDa subu 97.9 2.7E-05 9.3E-10 51.4 6.6 43 18-60 23-68 (323)
206 2o0j_A Terminase, DNA packagin 97.9 9.3E-05 3.2E-09 51.3 9.4 73 16-93 160-232 (385)
207 3uie_A Adenylyl-sulfate kinase 97.9 6.6E-06 2.3E-10 51.6 3.4 27 33-59 24-50 (200)
208 1rj9_A FTSY, signal recognitio 97.9 1.5E-05 5.2E-10 53.5 5.3 37 34-77 102-138 (304)
209 1ly1_A Polynucleotide kinase; 97.9 6.7E-06 2.3E-10 50.1 3.3 21 36-56 4-24 (181)
210 2iyv_A Shikimate kinase, SK; t 97.9 9.7E-06 3.3E-10 49.9 4.0 24 35-58 3-26 (184)
211 2z43_A DNA repair and recombin 97.9 1.1E-05 3.6E-10 54.4 4.4 44 34-78 107-150 (324)
212 1iy2_A ATP-dependent metallopr 97.9 6E-06 2.1E-10 54.2 3.1 23 36-58 75-97 (278)
213 1u0j_A DNA replication protein 97.9 1.5E-05 5.1E-10 52.8 5.0 23 36-58 106-128 (267)
214 1zuh_A Shikimate kinase; alpha 97.9 9.3E-06 3.2E-10 49.3 3.8 24 35-58 8-31 (168)
215 3fb4_A Adenylate kinase; psych 97.9 7.9E-06 2.7E-10 51.5 3.6 23 36-58 2-24 (216)
216 1q57_A DNA primase/helicase; d 97.9 1.2E-05 3.9E-10 57.1 4.7 50 33-89 241-290 (503)
217 2zan_A Vacuolar protein sortin 97.9 5.8E-06 2E-10 57.9 3.0 24 35-58 168-191 (444)
218 1ye8_A Protein THEP1, hypothet 97.9 9.1E-06 3.1E-10 50.5 3.6 23 36-58 2-24 (178)
219 3b9q_A Chloroplast SRP recepto 97.9 1.6E-05 5.5E-10 53.3 5.1 36 35-77 101-136 (302)
220 1xjc_A MOBB protein homolog; s 97.9 2.7E-05 9.4E-10 48.3 5.7 37 35-78 5-41 (169)
221 1knq_A Gluconate kinase; ALFA/ 97.9 8.1E-06 2.8E-10 49.9 3.3 25 34-58 8-32 (175)
222 2ze6_A Isopentenyl transferase 97.9 8.7E-06 3E-10 53.1 3.6 23 36-58 3-25 (253)
223 3lw7_A Adenylate kinase relate 97.9 6.9E-06 2.3E-10 49.5 2.9 19 36-54 3-21 (179)
224 2rhm_A Putative kinase; P-loop 97.9 8.1E-06 2.8E-10 50.4 3.3 24 35-58 6-29 (193)
225 3cm0_A Adenylate kinase; ATP-b 97.9 9.7E-06 3.3E-10 49.8 3.6 24 35-58 5-28 (186)
226 3a4m_A L-seryl-tRNA(SEC) kinas 97.9 2E-05 6.9E-10 51.4 5.3 27 35-61 5-31 (260)
227 3u4q_B ATP-dependent helicase/ 97.9 1.8E-05 6.2E-10 61.1 5.8 51 37-92 4-54 (1166)
228 2qor_A Guanylate kinase; phosp 97.9 8E-06 2.8E-10 51.3 3.2 26 33-58 11-36 (204)
229 3tau_A Guanylate kinase, GMP k 97.9 9.5E-06 3.2E-10 51.3 3.6 26 33-58 7-32 (208)
230 3e70_C DPA, signal recognition 97.9 1.8E-05 6.1E-10 53.7 5.1 36 34-76 129-164 (328)
231 3t61_A Gluconokinase; PSI-biol 97.9 1E-05 3.4E-10 50.6 3.6 24 35-58 19-42 (202)
232 2z0h_A DTMP kinase, thymidylat 97.9 2.1E-05 7.2E-10 48.6 5.1 26 36-61 2-27 (197)
233 2c95_A Adenylate kinase 1; tra 97.9 1E-05 3.4E-10 50.0 3.6 26 33-58 8-33 (196)
234 2plr_A DTMP kinase, probable t 97.9 9.1E-06 3.1E-10 50.7 3.4 26 34-59 4-29 (213)
235 2v3c_C SRP54, signal recogniti 97.9 1.2E-05 4.1E-10 56.5 4.3 34 36-76 101-134 (432)
236 1v5w_A DMC1, meiotic recombina 97.9 1.2E-05 4.2E-10 54.6 4.3 45 34-79 122-166 (343)
237 1y63_A LMAJ004144AAA protein; 97.9 1.1E-05 3.7E-10 50.0 3.6 24 34-57 10-33 (184)
238 2bwj_A Adenylate kinase 5; pho 97.9 1.6E-05 5.6E-10 49.2 4.5 26 33-58 11-36 (199)
239 1xp8_A RECA protein, recombina 97.9 2E-05 7E-10 54.2 5.3 37 34-77 74-110 (366)
240 1ojl_A Transcriptional regulat 97.9 1.9E-05 6.7E-10 52.7 5.1 26 34-59 25-50 (304)
241 3dl0_A Adenylate kinase; phosp 97.9 7.6E-06 2.6E-10 51.6 2.9 22 36-57 2-23 (216)
242 2eyu_A Twitching motility prot 97.9 1.7E-05 5.8E-10 52.1 4.6 29 32-60 23-51 (261)
243 1tev_A UMP-CMP kinase; ploop, 97.9 1.2E-05 4E-10 49.5 3.6 24 35-58 4-27 (196)
244 2fna_A Conserved hypothetical 97.9 3.6E-05 1.2E-09 51.2 6.3 43 15-58 12-54 (357)
245 2zpa_A Uncharacterized protein 97.9 2.1E-05 7.1E-10 58.0 5.4 61 19-89 175-237 (671)
246 2j41_A Guanylate kinase; GMP, 97.9 1E-05 3.5E-10 50.4 3.3 26 33-58 5-30 (207)
247 3sr0_A Adenylate kinase; phosp 97.9 1.2E-05 4E-10 51.3 3.6 23 36-58 2-24 (206)
248 1e6c_A Shikimate kinase; phosp 97.9 1.4E-05 5E-10 48.4 3.9 24 35-58 3-26 (173)
249 1lvg_A Guanylate kinase, GMP k 97.9 1.4E-05 4.8E-10 50.2 3.9 25 34-58 4-28 (198)
250 3c8u_A Fructokinase; YP_612366 97.9 1E-05 3.5E-10 51.0 3.2 26 34-59 22-47 (208)
251 1zu4_A FTSY; GTPase, signal re 97.9 2.3E-05 8E-10 52.9 5.1 35 35-76 106-140 (320)
252 2jaq_A Deoxyguanosine kinase; 97.8 1.3E-05 4.4E-10 49.8 3.6 23 36-58 2-24 (205)
253 1aky_A Adenylate kinase; ATP:A 97.8 1.5E-05 5E-10 50.5 3.9 25 34-58 4-28 (220)
254 3a00_A Guanylate kinase, GMP k 97.8 1.4E-05 4.8E-10 49.6 3.7 24 35-58 2-25 (186)
255 2cdn_A Adenylate kinase; phosp 97.8 1.3E-05 4.5E-10 50.1 3.6 24 35-58 21-44 (201)
256 2bbw_A Adenylate kinase 4, AK4 97.8 1.5E-05 5.2E-10 51.4 3.9 25 34-58 27-51 (246)
257 3umf_A Adenylate kinase; rossm 97.8 1.2E-05 4.2E-10 51.6 3.4 24 35-58 30-53 (217)
258 2wwf_A Thymidilate kinase, put 97.8 1.4E-05 4.7E-10 50.0 3.5 27 34-60 10-36 (212)
259 1nn5_A Similar to deoxythymidy 97.8 3.2E-05 1.1E-09 48.4 5.2 28 34-61 9-36 (215)
260 2pbr_A DTMP kinase, thymidylat 97.8 3.4E-05 1.2E-09 47.4 5.2 25 36-60 2-26 (195)
261 1zak_A Adenylate kinase; ATP:A 97.8 1.4E-05 4.8E-10 50.7 3.4 24 35-58 6-29 (222)
262 1znw_A Guanylate kinase, GMP k 97.8 1.7E-05 5.8E-10 50.0 3.7 28 31-58 17-44 (207)
263 2og2_A Putative signal recogni 97.8 2.8E-05 9.7E-10 53.4 5.0 36 35-77 158-193 (359)
264 2ewv_A Twitching motility prot 97.8 2.3E-05 8E-10 53.9 4.6 29 33-61 135-163 (372)
265 3m6a_A ATP-dependent protease 97.8 1.6E-05 5.3E-10 57.2 3.8 25 34-58 108-132 (543)
266 3pxi_A Negative regulator of g 97.8 4.6E-05 1.6E-09 56.5 6.3 43 18-60 182-227 (758)
267 1qf9_A UMP/CMP kinase, protein 97.8 1.5E-05 5.3E-10 48.9 3.3 23 36-58 8-30 (194)
268 1cke_A CK, MSSA, protein (cyti 97.8 2E-05 6.9E-10 49.8 3.9 24 35-58 6-29 (227)
269 2bdt_A BH3686; alpha-beta prot 97.8 1E-05 3.6E-10 50.0 2.5 22 35-56 3-24 (189)
270 2ce7_A Cell division protein F 97.8 1.8E-05 6.1E-10 56.2 3.9 24 35-58 50-73 (476)
271 2pez_A Bifunctional 3'-phospho 97.8 4.1E-05 1.4E-09 47.0 5.0 26 34-59 5-30 (179)
272 2r2a_A Uncharacterized protein 97.8 2E-05 6.9E-10 49.9 3.7 23 36-58 7-29 (199)
273 1ak2_A Adenylate kinase isoenz 97.8 1.9E-05 6.4E-10 50.6 3.6 24 35-58 17-40 (233)
274 3tlx_A Adenylate kinase 2; str 97.8 1.8E-05 6.3E-10 51.2 3.6 24 35-58 30-53 (243)
275 2pt5_A Shikimate kinase, SK; a 97.8 2E-05 7E-10 47.6 3.6 23 36-58 2-24 (168)
276 1ex7_A Guanylate kinase; subst 97.8 2.2E-05 7.6E-10 49.3 3.8 24 35-58 2-25 (186)
277 1j8m_F SRP54, signal recogniti 97.8 6.5E-05 2.2E-09 50.2 6.3 35 36-77 100-134 (297)
278 1tf7_A KAIC; homohexamer, hexa 97.8 5.9E-05 2E-09 53.8 6.4 52 33-92 280-331 (525)
279 1z6g_A Guanylate kinase; struc 97.8 2E-05 6.8E-10 50.3 3.6 26 33-58 22-47 (218)
280 1gvn_B Zeta; postsegregational 97.8 1.4E-05 4.7E-10 53.2 2.9 23 36-58 35-57 (287)
281 4ag6_A VIRB4 ATPase, type IV s 97.8 4.6E-05 1.6E-09 52.3 5.7 41 33-80 34-74 (392)
282 1e4v_A Adenylate kinase; trans 97.8 1.8E-05 6.1E-10 50.0 3.3 23 36-58 2-24 (214)
283 2qen_A Walker-type ATPase; unk 97.8 7.6E-05 2.6E-09 49.6 6.4 43 15-57 11-54 (350)
284 1m7g_A Adenylylsulfate kinase; 97.8 6E-05 2E-09 47.5 5.6 38 21-59 13-50 (211)
285 2oap_1 GSPE-2, type II secreti 97.8 3.4E-05 1.2E-09 55.2 4.9 39 20-58 245-284 (511)
286 1g5t_A COB(I)alamin adenosyltr 97.7 6.2E-05 2.1E-09 47.8 5.5 38 34-78 28-65 (196)
287 1rz3_A Hypothetical protein rb 97.7 4.1E-05 1.4E-09 48.0 4.7 27 35-61 23-49 (201)
288 1qvr_A CLPB protein; coiled co 97.7 0.00016 5.5E-09 54.3 8.6 41 20-60 174-217 (854)
289 1a5t_A Delta prime, HOLB; zinc 97.7 4E-05 1.4E-09 51.7 4.9 26 36-61 26-51 (334)
290 2xb4_A Adenylate kinase; ATP-b 97.7 2.4E-05 8E-10 49.9 3.6 23 36-58 2-24 (223)
291 2v54_A DTMP kinase, thymidylat 97.7 1.6E-05 5.4E-10 49.5 2.7 25 34-58 4-28 (204)
292 2vli_A Antibiotic resistance p 97.7 1.3E-05 4.3E-10 49.1 2.2 25 34-58 5-29 (183)
293 1zd8_A GTP:AMP phosphotransfer 97.7 1.7E-05 5.9E-10 50.5 2.9 25 34-58 7-31 (227)
294 3cf2_A TER ATPase, transitiona 97.7 2.6E-05 9E-10 58.5 4.2 24 35-58 512-535 (806)
295 3be4_A Adenylate kinase; malar 97.7 2.6E-05 9.1E-10 49.4 3.7 24 35-58 6-29 (217)
296 2yhs_A FTSY, cell division pro 97.7 4.2E-05 1.4E-09 54.7 5.1 35 35-76 294-328 (503)
297 3ney_A 55 kDa erythrocyte memb 97.7 2.7E-05 9.4E-10 49.4 3.7 26 33-58 18-43 (197)
298 1g41_A Heat shock protein HSLU 97.7 2.2E-05 7.5E-10 55.4 3.5 24 35-58 51-74 (444)
299 2i1q_A DNA repair and recombin 97.7 2.2E-05 7.6E-10 52.6 3.4 25 34-58 98-122 (322)
300 3pxi_A Negative regulator of g 97.7 3.8E-05 1.3E-09 56.9 4.9 26 36-61 523-548 (758)
301 1s96_A Guanylate kinase, GMP k 97.7 2.9E-05 1E-09 49.8 3.7 26 33-58 15-40 (219)
302 2j37_W Signal recognition part 97.7 0.00012 4E-09 52.4 7.1 35 36-77 103-137 (504)
303 2qm8_A GTPase/ATPase; G protei 97.7 5.1E-05 1.8E-09 51.5 5.1 28 34-61 55-82 (337)
304 2i3b_A HCR-ntpase, human cance 97.7 3.5E-05 1.2E-09 48.4 4.0 25 35-59 2-26 (189)
305 4gp7_A Metallophosphoesterase; 97.7 1.5E-05 5.3E-10 48.9 2.3 21 33-53 8-28 (171)
306 1np6_A Molybdopterin-guanine d 97.7 7.6E-05 2.6E-09 46.3 5.4 27 35-61 7-33 (174)
307 1ukz_A Uridylate kinase; trans 97.7 2.1E-05 7.1E-10 49.1 2.9 22 36-57 17-38 (203)
308 4a74_A DNA repair and recombin 97.7 1.9E-05 6.5E-10 49.8 2.7 27 34-60 25-51 (231)
309 3hu3_A Transitional endoplasmi 97.7 2.7E-05 9.2E-10 55.4 3.7 24 35-58 239-262 (489)
310 3asz_A Uridine kinase; cytidin 97.7 2.4E-05 8.2E-10 49.1 3.1 25 34-58 6-30 (211)
311 1e9r_A Conjugal transfer prote 97.7 6.8E-05 2.3E-09 52.1 5.5 43 34-83 53-95 (437)
312 1r6b_X CLPA protein; AAA+, N-t 97.7 9E-05 3.1E-09 54.8 6.4 40 21-60 191-233 (758)
313 3nwj_A ATSK2; P loop, shikimat 97.7 4.3E-05 1.5E-09 50.0 4.2 25 34-58 48-72 (250)
314 3p32_A Probable GTPase RV1496/ 97.7 6.4E-05 2.2E-09 51.2 5.2 35 36-77 81-115 (355)
315 2dhr_A FTSH; AAA+ protein, hex 97.7 2.3E-05 7.8E-10 56.0 3.0 23 36-58 66-88 (499)
316 2p5t_B PEZT; postsegregational 97.7 1.7E-05 5.7E-10 51.6 2.1 23 36-58 34-56 (253)
317 2j9r_A Thymidine kinase; TK1, 97.7 8.6E-05 3E-09 47.7 5.3 39 35-80 29-67 (214)
318 3lnc_A Guanylate kinase, GMP k 97.6 2E-05 6.9E-10 50.3 2.1 25 34-58 27-52 (231)
319 3io5_A Recombination and repai 97.6 3.9E-05 1.3E-09 52.2 3.5 26 36-61 30-55 (333)
320 3k1j_A LON protease, ATP-depen 97.6 6.7E-05 2.3E-09 54.4 5.0 34 25-58 50-84 (604)
321 1jjv_A Dephospho-COA kinase; P 97.6 3.6E-05 1.2E-09 48.1 3.0 21 36-56 4-24 (206)
322 2www_A Methylmalonic aciduria 97.6 9E-05 3.1E-09 50.5 5.2 27 35-61 75-101 (349)
323 3cf2_A TER ATPase, transitiona 97.6 2E-05 6.9E-10 59.1 2.1 24 35-58 239-262 (806)
324 3bs4_A Uncharacterized protein 97.6 6.1E-05 2.1E-09 49.7 4.1 53 35-95 22-74 (260)
325 2v9p_A Replication protein E1; 97.6 5.1E-05 1.8E-09 51.1 3.8 26 33-58 125-150 (305)
326 1ls1_A Signal recognition part 97.6 9E-05 3.1E-09 49.4 4.9 36 35-77 99-134 (295)
327 2if2_A Dephospho-COA kinase; a 97.6 3.8E-05 1.3E-09 47.9 3.0 21 36-56 3-23 (204)
328 1htw_A HI0065; nucleotide-bind 97.6 3.7E-05 1.3E-09 47.0 2.8 26 33-58 32-57 (158)
329 4e22_A Cytidylate kinase; P-lo 97.6 4.5E-05 1.5E-09 49.6 3.4 23 34-56 27-49 (252)
330 1ypw_A Transitional endoplasmi 97.6 4.2E-05 1.4E-09 57.3 3.5 24 35-58 512-535 (806)
331 4edh_A DTMP kinase, thymidylat 97.6 0.00015 5.2E-09 46.3 5.7 29 33-61 5-33 (213)
332 2xxa_A Signal recognition part 97.6 0.00012 4E-09 51.5 5.5 36 36-77 102-137 (433)
333 1qvr_A CLPB protein; coiled co 97.6 7.7E-05 2.6E-09 56.0 4.7 26 36-61 590-615 (854)
334 2gza_A Type IV secretion syste 97.6 5.3E-05 1.8E-09 51.9 3.5 26 33-58 174-199 (361)
335 1yrb_A ATP(GTP)binding protein 97.6 0.0001 3.5E-09 47.5 4.7 34 35-76 15-48 (262)
336 4eaq_A DTMP kinase, thymidylat 97.6 5.6E-05 1.9E-09 48.6 3.4 26 34-59 26-51 (229)
337 3tif_A Uncharacterized ABC tra 97.5 4.5E-05 1.5E-09 49.3 2.8 25 33-57 30-54 (235)
338 3crm_A TRNA delta(2)-isopenten 97.5 4.5E-05 1.6E-09 51.7 2.9 23 36-58 7-29 (323)
339 1gtv_A TMK, thymidylate kinase 97.5 2.2E-05 7.6E-10 49.2 1.2 25 36-60 2-26 (214)
340 3cmu_A Protein RECA, recombina 97.5 0.00011 3.9E-09 59.5 5.4 39 33-78 1080-1118(2050)
341 3a8t_A Adenylate isopentenyltr 97.5 2.7E-05 9.2E-10 53.2 1.6 24 35-58 41-64 (339)
342 3r20_A Cytidylate kinase; stru 97.5 7.4E-05 2.5E-09 48.5 3.6 25 34-58 9-33 (233)
343 2pt7_A CAG-ALFA; ATPase, prote 97.5 3.3E-05 1.1E-09 52.4 2.0 26 33-58 170-195 (330)
344 1svm_A Large T antigen; AAA+ f 97.5 8E-05 2.7E-09 51.5 3.9 25 34-58 169-193 (377)
345 3ake_A Cytidylate kinase; CMP 97.5 7.9E-05 2.7E-09 46.3 3.6 23 36-58 4-26 (208)
346 3aez_A Pantothenate kinase; tr 97.5 7E-05 2.4E-09 50.4 3.4 27 34-60 90-116 (312)
347 2jeo_A Uridine-cytidine kinase 97.5 7E-05 2.4E-09 48.3 3.3 25 34-58 25-49 (245)
348 2ffh_A Protein (FFH); SRP54, s 97.5 0.00014 4.7E-09 51.0 5.0 35 36-77 100-134 (425)
349 2pcj_A ABC transporter, lipopr 97.5 5.1E-05 1.8E-09 48.7 2.6 25 33-57 29-53 (224)
350 1ypw_A Transitional endoplasmi 97.5 4.5E-05 1.5E-09 57.1 2.6 24 35-58 239-262 (806)
351 1tf7_A KAIC; homohexamer, hexa 97.5 0.00025 8.7E-09 50.6 6.4 28 33-60 38-66 (525)
352 1uj2_A Uridine-cytidine kinase 97.5 6.6E-05 2.3E-09 48.6 3.0 23 36-58 24-46 (252)
353 1ltq_A Polynucleotide kinase; 97.5 7.3E-05 2.5E-09 49.3 3.3 22 36-57 4-25 (301)
354 2cbz_A Multidrug resistance-as 97.5 6.2E-05 2.1E-09 48.7 2.8 26 33-58 30-55 (237)
355 1sq5_A Pantothenate kinase; P- 97.5 0.00013 4.4E-09 48.8 4.4 24 35-58 81-104 (308)
356 1b0u_A Histidine permease; ABC 97.5 6.6E-05 2.3E-09 49.3 2.9 25 33-57 31-55 (262)
357 3lv8_A DTMP kinase, thymidylat 97.5 0.00032 1.1E-08 45.6 6.1 29 33-61 26-54 (236)
358 1sgw_A Putative ABC transporte 97.5 7.2E-05 2.5E-09 47.9 3.0 26 33-58 34-59 (214)
359 3exa_A TRNA delta(2)-isopenten 97.5 5.2E-05 1.8E-09 51.5 2.4 24 35-58 4-27 (322)
360 2qt1_A Nicotinamide riboside k 97.5 6E-05 2.1E-09 47.2 2.6 24 35-58 22-45 (207)
361 1r6b_X CLPA protein; AAA+, N-t 97.5 8.2E-05 2.8E-09 55.0 3.6 23 36-58 490-512 (758)
362 3gfo_A Cobalt import ATP-bindi 97.5 6.8E-05 2.3E-09 49.7 2.8 25 33-57 33-57 (275)
363 1w4r_A Thymidine kinase; type 97.5 0.00019 6.6E-09 45.5 4.8 38 34-78 20-57 (195)
364 2d2e_A SUFC protein; ABC-ATPas 97.5 9E-05 3.1E-09 48.3 3.3 25 33-57 28-52 (250)
365 2qmh_A HPR kinase/phosphorylas 97.5 6.8E-05 2.3E-09 47.8 2.7 25 34-58 34-58 (205)
366 1g6h_A High-affinity branched- 97.4 7.2E-05 2.4E-09 48.9 2.8 25 33-57 32-56 (257)
367 1uf9_A TT1252 protein; P-loop, 97.4 8.1E-05 2.8E-09 46.1 3.0 22 35-56 9-30 (203)
368 2zu0_C Probable ATP-dependent 97.4 9.7E-05 3.3E-09 48.6 3.4 25 33-57 45-69 (267)
369 2pze_A Cystic fibrosis transme 97.4 8E-05 2.7E-09 47.9 2.9 26 33-58 33-58 (229)
370 3lda_A DNA repair protein RAD5 97.4 0.00014 4.7E-09 50.6 4.2 27 34-60 178-204 (400)
371 1ji0_A ABC transporter; ATP bi 97.4 7.8E-05 2.7E-09 48.3 2.8 25 33-57 31-55 (240)
372 4tmk_A Protein (thymidylate ki 97.4 0.0004 1.4E-08 44.3 6.1 28 34-61 3-30 (213)
373 2ff7_A Alpha-hemolysin translo 97.4 7.9E-05 2.7E-09 48.5 2.8 25 33-57 34-58 (247)
374 2p67_A LAO/AO transport system 97.4 0.00019 6.5E-09 48.6 4.8 28 34-61 56-83 (341)
375 2axn_A 6-phosphofructo-2-kinas 97.4 0.00042 1.4E-08 49.6 6.7 25 35-59 36-60 (520)
376 2olj_A Amino acid ABC transpor 97.4 8.2E-05 2.8E-09 49.0 2.9 24 34-57 50-73 (263)
377 4g1u_C Hemin import ATP-bindin 97.4 8.2E-05 2.8E-09 49.0 2.9 25 33-57 36-60 (266)
378 3d3q_A TRNA delta(2)-isopenten 97.4 8.8E-05 3E-09 50.7 3.0 24 35-58 8-31 (340)
379 3fvq_A Fe(3+) IONS import ATP- 97.4 9E-05 3.1E-09 50.9 3.1 26 33-58 29-54 (359)
380 1c9k_A COBU, adenosylcobinamid 97.4 6.7E-05 2.3E-09 47.0 2.2 45 37-92 2-46 (180)
381 1q3t_A Cytidylate kinase; nucl 97.4 0.00013 4.4E-09 46.7 3.7 26 33-58 15-40 (236)
382 3cmw_A Protein RECA, recombina 97.4 0.00021 7.3E-09 57.3 5.5 36 34-76 732-767 (1706)
383 2grj_A Dephospho-COA kinase; T 97.4 0.00013 4.4E-09 45.9 3.6 23 35-57 13-35 (192)
384 3kta_A Chromosome segregation 97.4 0.0001 3.5E-09 45.1 3.0 25 34-58 26-50 (182)
385 1vpl_A ABC transporter, ATP-bi 97.4 9.1E-05 3.1E-09 48.6 2.9 25 33-57 40-64 (256)
386 2ghi_A Transport protein; mult 97.4 8.9E-05 3E-09 48.6 2.8 26 33-58 45-70 (260)
387 3cmw_A Protein RECA, recombina 97.4 0.00022 7.6E-09 57.2 5.5 38 34-78 34-71 (1706)
388 2qi9_C Vitamin B12 import ATP- 97.4 9.3E-05 3.2E-09 48.3 2.9 26 33-58 25-50 (249)
389 1nij_A Hypothetical protein YJ 97.4 8.6E-05 2.9E-09 49.9 2.8 23 35-57 5-27 (318)
390 3foz_A TRNA delta(2)-isopenten 97.4 9.4E-05 3.2E-09 50.1 2.9 24 35-58 11-34 (316)
391 3tqc_A Pantothenate kinase; bi 97.4 0.00028 9.5E-09 47.8 5.3 23 36-58 94-116 (321)
392 2ixe_A Antigen peptide transpo 97.4 9.1E-05 3.1E-09 48.9 2.8 25 33-57 44-68 (271)
393 1mv5_A LMRA, multidrug resista 97.4 7.6E-05 2.6E-09 48.4 2.4 26 33-58 27-52 (243)
394 2ihy_A ABC transporter, ATP-bi 97.4 9.6E-05 3.3E-09 49.0 2.9 26 33-58 46-71 (279)
395 1z47_A CYSA, putative ABC-tran 97.4 0.00012 3.9E-09 50.3 3.3 26 33-58 40-65 (355)
396 3hjh_A Transcription-repair-co 97.4 0.00052 1.8E-08 48.8 6.8 51 34-94 14-64 (483)
397 1odf_A YGR205W, hypothetical 3 97.4 0.00013 4.4E-09 48.6 3.4 25 36-60 33-57 (290)
398 2onk_A Molybdate/tungstate ABC 97.4 0.00012 4.2E-09 47.5 3.2 24 35-58 25-48 (240)
399 1vht_A Dephospho-COA kinase; s 97.4 0.00013 4.5E-09 46.0 3.3 22 35-56 5-26 (218)
400 3rlf_A Maltose/maltodextrin im 97.4 0.00013 4.3E-09 50.6 3.4 26 33-58 28-53 (381)
401 3f9v_A Minichromosome maintena 97.4 6.4E-05 2.2E-09 54.6 2.0 23 36-58 329-351 (595)
402 2yyz_A Sugar ABC transporter, 97.4 0.00013 4.3E-09 50.2 3.3 26 33-58 28-53 (359)
403 2it1_A 362AA long hypothetical 97.4 0.00013 4.4E-09 50.2 3.4 26 33-58 28-53 (362)
404 2yz2_A Putative ABC transporte 97.4 0.00011 3.7E-09 48.4 2.8 25 33-57 32-56 (266)
405 1v43_A Sugar-binding transport 97.4 0.00014 4.7E-09 50.2 3.4 25 33-57 36-60 (372)
406 1g29_1 MALK, maltose transport 97.3 0.00014 4.6E-09 50.2 3.3 25 33-57 28-52 (372)
407 1z6t_A APAF-1, apoptotic prote 97.3 0.00054 1.9E-08 49.0 6.6 42 16-57 124-170 (591)
408 2nq2_C Hypothetical ABC transp 97.3 0.00012 3.9E-09 47.9 2.8 26 33-58 30-55 (253)
409 2f1r_A Molybdopterin-guanine d 97.3 7.6E-05 2.6E-09 46.2 1.7 27 35-61 3-29 (171)
410 2npi_A Protein CLP1; CLP1-PCF1 97.3 0.00014 4.6E-09 51.5 3.2 29 33-61 137-165 (460)
411 3sop_A Neuronal-specific septi 97.3 0.00017 5.7E-09 47.6 3.2 25 36-60 4-28 (270)
412 3d31_A Sulfate/molybdate ABC t 97.3 0.00011 3.9E-09 50.2 2.4 25 33-57 25-49 (348)
413 2ga8_A Hypothetical 39.9 kDa p 97.3 0.0002 6.8E-09 49.3 3.6 25 36-60 26-50 (359)
414 2rcn_A Probable GTPase ENGC; Y 97.3 0.00032 1.1E-08 48.2 4.7 31 28-58 209-239 (358)
415 3v9p_A DTMP kinase, thymidylat 97.3 0.00051 1.7E-08 44.3 5.3 28 33-60 24-51 (227)
416 3ice_A Transcription terminati 97.3 0.00082 2.8E-08 47.0 6.6 40 22-61 159-201 (422)
417 2pjz_A Hypothetical protein ST 97.3 0.00015 5.1E-09 47.7 2.8 25 34-58 30-54 (263)
418 2yv5_A YJEQ protein; hydrolase 97.3 0.00034 1.2E-08 46.7 4.5 28 28-55 159-186 (302)
419 1a7j_A Phosphoribulokinase; tr 97.3 0.00025 8.6E-09 47.1 3.8 25 35-59 6-30 (290)
420 3eph_A TRNA isopentenyltransfe 97.3 0.00019 6.4E-09 50.2 3.3 23 36-58 4-26 (409)
421 1ihu_A Arsenical pump-driving 97.3 0.00048 1.7E-08 49.6 5.6 37 34-77 8-44 (589)
422 3zvl_A Bifunctional polynucleo 97.3 0.00011 3.8E-09 51.1 2.2 22 35-56 259-280 (416)
423 1pzn_A RAD51, DNA repair and r 97.3 0.00013 4.5E-09 49.7 2.5 25 34-58 131-155 (349)
424 1f2t_A RAD50 ABC-ATPase; DNA d 97.3 0.00023 8E-09 42.9 3.3 26 34-59 23-48 (149)
425 3gd7_A Fusion complex of cysti 97.3 0.00017 5.9E-09 50.0 3.1 25 33-57 46-70 (390)
426 3cr8_A Sulfate adenylyltranfer 97.3 0.00022 7.4E-09 51.5 3.7 29 33-61 368-396 (552)
427 1lw7_A Transcriptional regulat 97.2 0.00014 4.7E-09 49.6 2.5 25 34-58 170-194 (365)
428 3ug7_A Arsenical pump-driving 97.2 0.00048 1.6E-08 46.9 5.1 34 36-76 28-61 (349)
429 3zq6_A Putative arsenical pump 97.2 0.00046 1.6E-08 46.4 4.9 35 36-77 16-50 (324)
430 2f6r_A COA synthase, bifunctio 97.2 0.00019 6.4E-09 47.5 2.8 20 36-55 77-96 (281)
431 2bbs_A Cystic fibrosis transme 97.2 0.00017 5.8E-09 48.1 2.5 25 34-58 64-88 (290)
432 3ld9_A DTMP kinase, thymidylat 97.2 0.00054 1.8E-08 44.1 4.8 27 34-60 21-47 (223)
433 2h92_A Cytidylate kinase; ross 97.2 0.00029 1E-08 44.3 3.5 23 35-57 4-26 (219)
434 1oxx_K GLCV, glucose, ABC tran 97.2 0.00012 4E-09 50.2 1.7 25 33-57 30-54 (353)
435 2f9l_A RAB11B, member RAS onco 97.2 0.00027 9.2E-09 43.8 3.2 22 36-57 7-28 (199)
436 1sky_E F1-ATPase, F1-ATP synth 97.2 0.00082 2.8E-08 47.8 6.0 29 33-61 150-178 (473)
437 3bfv_A CAPA1, CAPB2, membrane 97.2 0.00073 2.5E-08 44.5 5.3 35 35-76 83-118 (271)
438 3tui_C Methionine import ATP-b 97.2 0.00028 9.4E-09 48.7 3.4 24 33-56 53-76 (366)
439 2gno_A DNA polymerase III, gam 97.2 0.00044 1.5E-08 46.3 4.3 24 35-58 19-42 (305)
440 3hjn_A DTMP kinase, thymidylat 97.2 0.0014 4.8E-08 41.1 6.4 33 37-76 3-35 (197)
441 1u0l_A Probable GTPase ENGC; p 97.2 0.00048 1.6E-08 45.9 4.4 27 30-56 165-191 (301)
442 3cio_A ETK, tyrosine-protein k 97.2 0.00069 2.4E-08 45.2 5.1 35 35-76 105-140 (299)
443 1oix_A RAS-related protein RAB 97.1 0.00029 9.8E-09 43.5 3.0 23 36-58 31-53 (191)
444 2wsm_A Hydrogenase expression/ 97.1 0.00069 2.4E-08 42.4 4.8 25 34-58 30-54 (221)
445 3gmt_A Adenylate kinase; ssgci 97.1 0.00039 1.3E-08 45.1 3.6 24 35-58 9-32 (230)
446 3tmk_A Thymidylate kinase; pho 97.1 0.0004 1.4E-08 44.5 3.6 25 34-58 5-29 (216)
447 3kjh_A CO dehydrogenase/acetyl 97.1 0.00043 1.5E-08 44.0 3.6 33 37-76 3-35 (254)
448 3nh6_A ATP-binding cassette SU 97.1 0.00018 6E-09 48.4 1.9 25 34-58 80-104 (306)
449 2orv_A Thymidine kinase; TP4A 97.1 0.00078 2.7E-08 43.8 4.8 38 34-78 19-56 (234)
450 1x6v_B Bifunctional 3'-phospho 97.1 0.00069 2.4E-08 49.7 5.0 26 36-61 54-79 (630)
451 4hlc_A DTMP kinase, thymidylat 97.1 0.001 3.5E-08 42.1 5.3 24 35-58 3-26 (205)
452 2obl_A ESCN; ATPase, hydrolase 97.1 0.00038 1.3E-08 47.5 3.5 33 26-58 60-95 (347)
453 1bif_A 6-phosphofructo-2-kinas 97.1 0.0016 5.6E-08 45.8 6.7 25 36-60 41-65 (469)
454 2woo_A ATPase GET3; tail-ancho 97.1 0.00087 3E-08 45.2 5.2 36 34-76 19-54 (329)
455 2dyk_A GTP-binding protein; GT 97.1 0.00043 1.5E-08 40.9 3.3 22 36-57 3-24 (161)
456 1tq4_A IIGP1, interferon-induc 97.1 0.00061 2.1E-08 47.6 4.4 22 36-57 71-92 (413)
457 3end_A Light-independent proto 97.1 0.00085 2.9E-08 44.4 5.0 35 35-76 42-76 (307)
458 3iqw_A Tail-anchored protein t 97.1 0.0008 2.7E-08 45.7 4.9 36 35-77 17-52 (334)
459 3tqf_A HPR(Ser) kinase; transf 97.1 0.00037 1.3E-08 43.6 2.9 23 34-56 16-38 (181)
460 3qf7_A RAD50; ABC-ATPase, ATPa 97.1 0.0005 1.7E-08 47.1 3.8 27 34-60 23-49 (365)
461 2hf9_A Probable hydrogenase ni 97.1 0.00084 2.9E-08 42.2 4.6 26 35-60 39-64 (226)
462 2ocp_A DGK, deoxyguanosine kin 97.1 0.00028 9.4E-09 45.3 2.4 24 35-58 3-26 (241)
463 3l0o_A Transcription terminati 97.1 0.0017 5.8E-08 45.5 6.4 40 22-61 160-202 (427)
464 3e2i_A Thymidine kinase; Zn-bi 97.0 0.001 3.4E-08 42.9 4.8 40 34-80 28-67 (219)
465 1kao_A RAP2A; GTP-binding prot 97.0 0.0005 1.7E-08 40.6 3.3 22 36-57 5-26 (167)
466 2wji_A Ferrous iron transport 97.0 0.00044 1.5E-08 41.5 3.0 22 35-56 4-25 (165)
467 1z2a_A RAS-related protein RAB 97.0 0.0005 1.7E-08 40.8 3.2 22 36-57 7-28 (168)
468 3qks_A DNA double-strand break 97.0 0.0005 1.7E-08 43.3 3.3 27 34-60 23-49 (203)
469 2gks_A Bifunctional SAT/APS ki 97.0 0.0015 5.1E-08 47.1 6.1 27 35-61 373-399 (546)
470 1nrj_B SR-beta, signal recogni 97.0 0.00058 2E-08 42.6 3.5 25 34-58 12-36 (218)
471 2ce2_X GTPase HRAS; signaling 97.0 0.00049 1.7E-08 40.5 2.9 22 36-57 5-26 (166)
472 3io3_A DEHA2D07832P; chaperone 97.0 0.0011 3.9E-08 45.2 5.0 37 35-77 19-56 (348)
473 2dpy_A FLII, flagellum-specifi 97.0 0.00053 1.8E-08 48.2 3.5 33 26-58 146-181 (438)
474 2ged_A SR-beta, signal recogni 97.0 0.00056 1.9E-08 41.8 3.3 23 35-57 49-71 (193)
475 1wms_A RAB-9, RAB9, RAS-relate 97.0 0.00061 2.1E-08 40.9 3.3 21 36-56 9-29 (177)
476 1ek0_A Protein (GTP-binding pr 97.0 0.0006 2.1E-08 40.4 3.2 22 36-57 5-26 (170)
477 2zej_A Dardarin, leucine-rich 97.0 0.00043 1.5E-08 42.3 2.6 21 36-56 4-24 (184)
478 2oze_A ORF delta'; para, walke 97.0 0.003 1E-07 41.5 6.8 35 34-75 34-71 (298)
479 3b5x_A Lipid A export ATP-bind 97.0 0.00043 1.5E-08 50.0 2.8 26 33-58 368-393 (582)
480 1u8z_A RAS-related protein RAL 97.0 0.00064 2.2E-08 40.2 3.2 21 36-56 6-26 (168)
481 1ky3_A GTP-binding protein YPT 97.0 0.00065 2.2E-08 40.8 3.3 23 35-57 9-31 (182)
482 1z0j_A RAB-22, RAS-related pro 96.9 0.00068 2.3E-08 40.3 3.3 22 36-57 8-29 (170)
483 1cp2_A CP2, nitrogenase iron p 96.9 0.0013 4.5E-08 42.5 4.8 32 37-75 4-35 (269)
484 2ius_A DNA translocase FTSK; n 96.9 0.0017 5.8E-08 46.6 5.7 28 34-61 167-194 (512)
485 2afh_E Nitrogenase iron protei 96.9 0.0014 4.9E-08 42.9 5.0 32 37-75 5-36 (289)
486 1g16_A RAS-related protein SEC 96.9 0.00061 2.1E-08 40.5 2.9 21 36-56 5-25 (170)
487 2nzj_A GTP-binding protein REM 96.9 0.00066 2.2E-08 40.6 3.1 21 36-56 6-26 (175)
488 1byi_A Dethiobiotin synthase; 96.9 0.0018 6.1E-08 40.7 5.2 34 37-77 4-38 (224)
489 1z08_A RAS-related protein RAB 96.9 0.00073 2.5E-08 40.2 3.3 22 36-57 8-29 (170)
490 2erx_A GTP-binding protein DI- 96.9 0.00067 2.3E-08 40.3 3.1 21 36-56 5-25 (172)
491 2ck3_D ATP synthase subunit be 96.9 0.0041 1.4E-07 44.3 7.4 62 26-92 142-207 (482)
492 2wjg_A FEOB, ferrous iron tran 96.9 0.00066 2.2E-08 41.3 3.0 22 35-56 8-29 (188)
493 3qkt_A DNA double-strand break 96.9 0.00075 2.6E-08 45.6 3.5 27 34-60 23-49 (339)
494 2lkc_A Translation initiation 96.9 0.00085 2.9E-08 40.3 3.4 23 34-56 8-30 (178)
495 3q85_A GTP-binding protein REM 96.9 0.00072 2.5E-08 40.2 3.0 20 36-55 4-23 (169)
496 1r2q_A RAS-related protein RAB 96.9 0.0008 2.7E-08 39.9 3.2 21 36-56 8-28 (170)
497 1c1y_A RAS-related protein RAP 96.9 0.00082 2.8E-08 39.8 3.2 21 36-56 5-25 (167)
498 4dzz_A Plasmid partitioning pr 96.9 0.0015 5.2E-08 40.3 4.5 31 39-76 7-37 (206)
499 1m8p_A Sulfate adenylyltransfe 96.9 0.0015 5.2E-08 47.3 5.1 26 36-61 398-423 (573)
500 2woj_A ATPase GET3; tail-ancho 96.9 0.0015 5.2E-08 44.5 4.8 36 35-77 19-56 (354)
No 1
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=99.74 E-value=8.7e-18 Score=122.24 Aligned_cols=71 Identities=39% Similarity=0.481 Sum_probs=64.2
Q ss_pred CCCCHHHHHHHHHHhc-CCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhhccC
Q psy16285 18 LGLNTIQFEAYKAALT-REFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKYTQN 95 (97)
Q Consensus 18 ~~l~~~Q~~~i~~~~~-~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~~~~ 95 (97)
..||+.|++|+..++. .+..+|+||||||||+++..++.+++.. +.+||+++|||.|++++.++|...+.+
T Consensus 188 ~~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~-------~~~ILv~a~TN~AvD~i~erL~~~~~~ 259 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQ-------GLKVLCCAPSNIAVDNLVERLALCKQR 259 (646)
T ss_dssp TTCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHT-------TCCEEEEESSHHHHHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhC-------CCeEEEEcCchHHHHHHHHHHHhcCCc
Confidence 4689999999999886 4688999999999999999999999887 789999999999999999999877654
No 2
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=99.62 E-value=3.3e-15 Score=108.51 Aligned_cols=71 Identities=38% Similarity=0.537 Sum_probs=64.0
Q ss_pred CCCCCHHHHHHHHHHhcCCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhhc
Q psy16285 17 ELGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKYT 93 (97)
Q Consensus 17 ~~~l~~~Q~~~i~~~~~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~~ 93 (97)
...+++.|.+++..+..++..+|+||||||||+++..++..+... .+.+|++++|||.|++++.+++.+.+
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~l~~~------~~~~ilv~a~tn~A~~~l~~~l~~~~ 248 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ------GNGPVLVCAPSNIAVDQLTEKIHQTG 248 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHHHHTS------SSCCEEEEESSHHHHHHHHHHHHTTT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHHHHHHc------CCCeEEEEeCcHHHHHHHHHHHHhcC
Confidence 346899999999998888899999999999999999999988874 37899999999999999999998764
No 3
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.59 E-value=7.5e-15 Score=109.27 Aligned_cols=71 Identities=34% Similarity=0.419 Sum_probs=63.9
Q ss_pred CCCCCHHHHHHHHHHhcCCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhhc
Q psy16285 17 ELGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKYT 93 (97)
Q Consensus 17 ~~~l~~~Q~~~i~~~~~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~~ 93 (97)
...|++.|++|+..+..++..+|+||||||||+++..++..+... .+.+||+++|||.|++++.+++.+.+
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~------~~~~ILv~a~tn~A~d~l~~rL~~~g 428 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKI------HKDRILVCAPSNVAVDHLAAKLRDLG 428 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHH------HCCCEEEEESSHHHHHHHHHHHHHTT
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhC------CCCeEEEEcCcHHHHHHHHHHHHhhC
Confidence 346899999999999888889999999999999999999888774 37899999999999999999998764
No 4
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=99.58 E-value=1.3e-14 Score=107.95 Aligned_cols=72 Identities=38% Similarity=0.522 Sum_probs=64.5
Q ss_pred CCCCCHHHHHHHHHHhcCCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhhcc
Q psy16285 17 ELGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKYTQ 94 (97)
Q Consensus 17 ~~~l~~~Q~~~i~~~~~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~~~ 94 (97)
...+++.|.+++..+..++..+|+||||||||+++..++..+... .+.+|++++|||.|++++.+++.+.+.
T Consensus 354 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~~l~~~------~~~~ilv~a~tn~A~~~l~~~l~~~g~ 425 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ------GNGPVLVCAPSNIAVDQLTEKIHQTGL 425 (800)
T ss_dssp SCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHHHHHTT------CSSCEEEEESSHHHHHHHHHHHHTTTC
T ss_pred ccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHHHHHHc------CCCcEEEEcCcHHHHHHHHHHHHHhCc
Confidence 456899999999999888899999999999999999999988874 378999999999999999999987653
No 5
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=99.45 E-value=5.1e-13 Score=96.42 Aligned_cols=66 Identities=18% Similarity=0.180 Sum_probs=60.0
Q ss_pred CCCCCHHHHHHHHHHhcCCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHH
Q psy16285 17 ELGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGV 89 (97)
Q Consensus 17 ~~~l~~~Q~~~i~~~~~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l 89 (97)
.+.+++.|++++..+..++.++|+||||||||+++..++..+... +.+|++++||+.++.++.+.+
T Consensus 187 ~~~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~~~l~~~-------g~~Vl~~ApT~~Aa~~L~e~~ 252 (574)
T 3e1s_A 187 RKGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLAESL-------GLEVGLCAPTGKAARRLGEVT 252 (574)
T ss_dssp TTTCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHHHHHHHHHT-------TCCEEEEESSHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHHHHHHHHhc-------CCeEEEecCcHHHHHHhHhhh
Confidence 567899999999999999999999999999999999999888765 789999999999999998754
No 6
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.42 E-value=1e-12 Score=82.99 Aligned_cols=79 Identities=29% Similarity=0.379 Sum_probs=64.1
Q ss_pred cccCCCCCHHHHHHHHHHhcCCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHH-HHHHHHhh
Q psy16285 14 VQEELGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQ-FVEGVLKY 92 (97)
Q Consensus 14 ~~~~~~l~~~Q~~~i~~~~~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~-~~~~l~~~ 92 (97)
....+.+++.|.+++..+.+++++++.+|+|+|||.++...+..++...... ....++++++|+..++.| +.+.+.++
T Consensus 28 ~~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~-~~~~~~lil~p~~~L~~q~~~~~~~~~ 106 (216)
T 3b6e_A 28 PEPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKA-SEPGKVIVLVNKVLLVEQLFRKEFQPF 106 (216)
T ss_dssp CSCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHT-TCCCCEEEEESSHHHHHHHHHHTHHHH
T ss_pred ccCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccc-cCCCcEEEEECHHHHHHHHHHHHHHHH
Confidence 3456789999999999999889999999999999999888777665542211 136799999999999999 77777776
Q ss_pred c
Q psy16285 93 T 93 (97)
Q Consensus 93 ~ 93 (97)
.
T Consensus 107 ~ 107 (216)
T 3b6e_A 107 L 107 (216)
T ss_dssp H
T ss_pred h
Confidence 4
No 7
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=99.41 E-value=1.5e-12 Score=91.48 Aligned_cols=69 Identities=22% Similarity=0.257 Sum_probs=58.6
Q ss_pred ccCCCCCHHHHHHHHHHhc-----CCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHH
Q psy16285 15 QEELGLNTIQFEAYKAALT-----REFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGV 89 (97)
Q Consensus 15 ~~~~~l~~~Q~~~i~~~~~-----~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l 89 (97)
...-.|++.|++++..+.. .+.++|.||||||||+++..++..+... ...++++++||+.++.++.+++
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~------~~~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALIST------GETGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHT------TCCCEEEEESSHHHHHHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhc------CCceEEEecCcHHHHHHHHhhh
Confidence 3445689999999997653 3489999999999999999999999887 2458999999999999998776
No 8
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.41 E-value=1.3e-12 Score=86.41 Aligned_cols=71 Identities=21% Similarity=0.316 Sum_probs=62.5
Q ss_pred CCCCHHHHHHHHHHhcCCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhhcc
Q psy16285 18 LGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKYTQ 94 (97)
Q Consensus 18 ~~l~~~Q~~~i~~~~~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~~~ 94 (97)
+.+++.|.+++..+..++..++.+|+|+|||.++..++...+.. ...++++++|++.++.|+.+++.+++.
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~------~~~~~lil~Pt~~L~~q~~~~l~~~~~ 182 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN------YEGKILIIVPTTALTTQMADDFVDYRL 182 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHH------CSSEEEEECSSHHHHHHHHHHHHHHTS
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHc------CCCeEEEEECCHHHHHHHHHHHHHhcc
Confidence 58999999999998888888999999999999988887776655 345899999999999999999999864
No 9
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=99.40 E-value=7.4e-13 Score=95.69 Aligned_cols=70 Identities=23% Similarity=0.258 Sum_probs=59.9
Q ss_pred CCCHHHHHHHHHHhcCCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhhc
Q psy16285 19 GLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKYT 93 (97)
Q Consensus 19 ~l~~~Q~~~i~~~~~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~~ 93 (97)
.|++.|++++. ...+.++|.|+||||||+++...+.+++..... ++.+||++++|+.+++++.+++.+..
T Consensus 9 ~Ln~~Q~~av~--~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~---~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 9 SLNDKQREAVA--APRSNLLVLAGAGSGKTRVLVHRIAWLMSVENC---SPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TCCHHHHHHHT--CCSSCEEEEECTTSCHHHHHHHHHHHHHHTSCC---CGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHh--CCCCCEEEEECCCCCHHHHHHHHHHHHHHhCCC---ChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 68999999987 346789999999999999999988888876322 35799999999999999999998763
No 10
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.39 E-value=4.8e-12 Score=81.42 Aligned_cols=78 Identities=22% Similarity=0.119 Sum_probs=60.9
Q ss_pred cCCCCCHHHHHHHHHHhcCCceEEeCCCCCchHHHHHHHH-HHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhhcc
Q psy16285 16 EELGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIV-EGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKYTQ 94 (97)
Q Consensus 16 ~~~~l~~~Q~~~i~~~~~~~~~~v~Gp~GtGKT~~~~~~~-~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~~~ 94 (97)
+...+++.|.+++..+.+++.+++.+|+|+|||......+ ..+.+.. .....+.++++++|+++++.|+.+.+.+++.
T Consensus 44 ~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~-~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 122 (236)
T 2pl3_A 44 QYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQ-WTSTDGLGVLIISPTRELAYQTFEVLRKVGK 122 (236)
T ss_dssp TCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTT-CCGGGCCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhc-ccccCCceEEEEeCCHHHHHHHHHHHHHHhC
Confidence 3456899999999999999999999999999998755443 3333311 0011367899999999999999999998864
No 11
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.38 E-value=5.4e-12 Score=79.43 Aligned_cols=78 Identities=22% Similarity=0.072 Sum_probs=60.9
Q ss_pred cCCCCCHHHHHHHHHHhcCCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhhcc
Q psy16285 16 EELGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKYTQ 94 (97)
Q Consensus 16 ~~~~l~~~Q~~~i~~~~~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~~~ 94 (97)
+...+++.|.+++..+.+++++++.+|+|+|||..+...+...+.... ....+.++++++|+++++.|+.+.+.++..
T Consensus 20 ~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~-~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 97 (207)
T 2gxq_A 20 GLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQ-ERGRKPRALVLTPTRELALQVASELTAVAP 97 (207)
T ss_dssp TCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCC-CTTCCCSEEEECSSHHHHHHHHHHHHHHCT
T ss_pred CCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhcc-ccCCCCcEEEEECCHHHHHHHHHHHHHHhh
Confidence 345789999999999999999999999999999875544443332110 001367899999999999999999998864
No 12
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.37 E-value=5.9e-12 Score=80.18 Aligned_cols=72 Identities=19% Similarity=0.187 Sum_probs=59.7
Q ss_pred CCCHHHHHHHHHHhcCCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhhcc
Q psy16285 19 GLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKYTQ 94 (97)
Q Consensus 19 ~l~~~Q~~~i~~~~~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~~~ 94 (97)
.+++.|.+++..+.++..+++.+|+|+|||..+...+...+.... ...++++++|+++++.|+.+.++++..
T Consensus 36 ~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~----~~~~~lil~Pt~~L~~q~~~~~~~~~~ 107 (220)
T 1t6n_A 36 HPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVT----GQVSVLVMCHTRELAFQISKEYERFSK 107 (220)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCT----TCCCEEEECSCHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccC----CCEEEEEEeCCHHHHHHHHHHHHHHHh
Confidence 489999999999999999999999999999876665555444321 245899999999999999999998853
No 13
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.37 E-value=5.2e-12 Score=82.11 Aligned_cols=69 Identities=30% Similarity=0.340 Sum_probs=60.0
Q ss_pred ccCCCCCHHHHHHHHHHhcCCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhhc
Q psy16285 15 QEELGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKYT 93 (97)
Q Consensus 15 ~~~~~l~~~Q~~~i~~~~~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~~ 93 (97)
...+.+++.|.+++..+.+++.+++.||+|+|||.++..++..+ +.++++++|+..++.|+.+.+.+++
T Consensus 89 ~~~~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~----------~~~~liv~P~~~L~~q~~~~~~~~~ 157 (237)
T 2fz4_A 89 DAEISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL----------STPTLIVVPTLALAEQWKERLGIFG 157 (237)
T ss_dssp CCCCCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS----------CSCEEEEESSHHHHHHHHHHHGGGC
T ss_pred cCCCCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc----------CCCEEEEeCCHHHHHHHHHHHHhCC
Confidence 44578999999999998888889999999999999987776543 5689999999999999999998854
No 14
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.37 E-value=7.4e-12 Score=79.83 Aligned_cols=73 Identities=18% Similarity=0.084 Sum_probs=59.2
Q ss_pred CCCCCHHHHHHHHHHhcCCceEEeCCCCCchHHHH-HHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhhcc
Q psy16285 17 ELGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVA-LRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKYTQ 94 (97)
Q Consensus 17 ~~~l~~~Q~~~i~~~~~~~~~~v~Gp~GtGKT~~~-~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~~~ 94 (97)
...+++.|.+++..+.++.++++.+|+|+|||... ..++..+.... .+.++++++|+++++.|+.+.+.++..
T Consensus 34 ~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~-----~~~~~lil~Pt~~L~~q~~~~~~~~~~ 107 (224)
T 1qde_A 34 FEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSV-----KAPQALMLAPTRELALQIQKVVMALAF 107 (224)
T ss_dssp CCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTC-----CSCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred CCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccC-----CCceEEEEECCHHHHHHHHHHHHHHhc
Confidence 34689999999999999999999999999999874 33344332221 357999999999999999999988753
No 15
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.36 E-value=7.6e-12 Score=78.79 Aligned_cols=74 Identities=19% Similarity=0.069 Sum_probs=59.1
Q ss_pred CCCCCHHHHHHHHHHhcCCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhhcc
Q psy16285 17 ELGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKYTQ 94 (97)
Q Consensus 17 ~~~l~~~Q~~~i~~~~~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~~~ 94 (97)
...+++.|.+++..+.+++++++.+|+|+|||..+...+........ .+.++++++|+++++.|+.+.+.++..
T Consensus 23 ~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~----~~~~~lil~Pt~~L~~q~~~~~~~~~~ 96 (206)
T 1vec_A 23 WEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKK----DNIQAMVIVPTRELALQVSQICIQVSK 96 (206)
T ss_dssp CCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTS----CSCCEEEECSCHHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccC----CCeeEEEEeCcHHHHHHHHHHHHHHHh
Confidence 34689999999999999999999999999999765544333322211 356899999999999999999988764
No 16
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.36 E-value=6.9e-12 Score=82.37 Aligned_cols=76 Identities=16% Similarity=0.127 Sum_probs=59.4
Q ss_pred CCCHHHHHHHHHHhcCCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhhcc
Q psy16285 19 GLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKYTQ 94 (97)
Q Consensus 19 ~l~~~Q~~~i~~~~~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~~~ 94 (97)
.+++.|.+++..+..++++++.+|+|+|||..+...+...+.........+.++++++|+++++.|+.+.++++..
T Consensus 76 ~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~ 151 (262)
T 3ly5_A 76 NMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMT 151 (262)
T ss_dssp BCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHh
Confidence 3899999999999999999999999999998755444333322111111377899999999999999999998764
No 17
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.35 E-value=1.1e-11 Score=80.11 Aligned_cols=75 Identities=21% Similarity=0.146 Sum_probs=59.3
Q ss_pred CCCCCHHHHHHHHHHhcCCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhhcc
Q psy16285 17 ELGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKYTQ 94 (97)
Q Consensus 17 ~~~l~~~Q~~~i~~~~~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~~~ 94 (97)
...+++.|.+++..+.+++.+++.+|+|+|||..+...+...+.... ..+.++++++|+++++.|+.+.+.++..
T Consensus 49 ~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~---~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 123 (245)
T 3dkp_A 49 FQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPA---NKGFRALIISPTRELASQIHRELIKISE 123 (245)
T ss_dssp CCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCC---SSSCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcc---cCCceEEEEeCCHHHHHHHHHHHHHHhc
Confidence 34589999999999999999999999999999875444333332210 1356899999999999999999998854
No 18
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.35 E-value=5.9e-12 Score=80.29 Aligned_cols=75 Identities=25% Similarity=0.153 Sum_probs=60.2
Q ss_pred cCCCCCHHHHHHHHHHhcCCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhhcc
Q psy16285 16 EELGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKYTQ 94 (97)
Q Consensus 16 ~~~~l~~~Q~~~i~~~~~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~~~ 94 (97)
+...+++.|.+++..+.+++++++.+|+|+|||......+...+.... .+.+++|++|+++++.|+.+.++++..
T Consensus 23 g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~----~~~~~lil~Pt~~L~~q~~~~~~~~~~ 97 (219)
T 1q0u_A 23 RFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPER----AEVQAVITAPTRELATQIYHETLKITK 97 (219)
T ss_dssp TCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTS----CSCCEEEECSSHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCc----CCceEEEEcCcHHHHHHHHHHHHHHhh
Confidence 445689999999999999999999999999999875444433333211 357899999999999999999988764
No 19
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=99.34 E-value=3.3e-12 Score=92.66 Aligned_cols=69 Identities=28% Similarity=0.316 Sum_probs=58.6
Q ss_pred CHHHHHHHHHHhcCCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhh
Q psy16285 21 NTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKY 92 (97)
Q Consensus 21 ~~~Q~~~i~~~~~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~ 92 (97)
.+.|++++..+..++.++|+||||||||+++..++..+..... ..+.++++++||+.++.++.+.+...
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~---~~~~~vll~APTg~AA~~L~e~~~~~ 219 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD---GERCRIRLAAPTGKAAARLTESLGKA 219 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS---SCCCCEEEEBSSHHHHHHHHHHHTHH
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh---cCCCeEEEEeCChhHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999888875310 03569999999999999999887653
No 20
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.34 E-value=5.9e-12 Score=81.36 Aligned_cols=73 Identities=21% Similarity=0.097 Sum_probs=59.1
Q ss_pred CCCCHHHHHHHHHHhcCCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhhcc
Q psy16285 18 LGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKYTQ 94 (97)
Q Consensus 18 ~~l~~~Q~~~i~~~~~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~~~ 94 (97)
..+++.|.+++..+.++.++++.+|+|+|||..+...+...+.... .+.+++|++|+++++.|+.+.+++++.
T Consensus 51 ~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~----~~~~~lil~Pt~~L~~q~~~~~~~~~~ 123 (237)
T 3bor_A 51 EKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEF----KETQALVLAPTRELAQQIQKVILALGD 123 (237)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTS----CSCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcC----CCceEEEEECcHHHHHHHHHHHHHHhh
Confidence 3489999999999999999999999999999875444443333211 357899999999999999999998864
No 21
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.33 E-value=1.6e-11 Score=80.15 Aligned_cols=73 Identities=22% Similarity=0.065 Sum_probs=59.3
Q ss_pred CCCCCHHHHHHHHHHhcCCceEEeCCCCCchHHHHHHHH-HHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhhcc
Q psy16285 17 ELGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIV-EGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKYTQ 94 (97)
Q Consensus 17 ~~~l~~~Q~~~i~~~~~~~~~~v~Gp~GtGKT~~~~~~~-~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~~~ 94 (97)
...+++.|.+++..+.+++.+++.+|+|+|||..+...+ ..+.... .+.+++|++|+++++.|+.+.++++..
T Consensus 63 ~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~-----~~~~~lil~Ptr~L~~q~~~~~~~~~~ 136 (249)
T 3ber_A 63 WTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP-----QRLFALVLTPTRELAFQISEQFEALGS 136 (249)
T ss_dssp CCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSC-----CSSCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred CCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCC-----CCceEEEEeCCHHHHHHHHHHHHHHhc
Confidence 347899999999999999999999999999998754443 3443331 256799999999999999999988753
No 22
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.33 E-value=9.9e-12 Score=85.59 Aligned_cols=71 Identities=18% Similarity=0.098 Sum_probs=60.2
Q ss_pred CCCCCHHHHHHHHHHhcCCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhhcc
Q psy16285 17 ELGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKYTQ 94 (97)
Q Consensus 17 ~~~l~~~Q~~~i~~~~~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~~~ 94 (97)
.+.+++.|.+++..+.++.++++.+|||+|||......+..... .+.+++|++|+++++.|+.+++.++..
T Consensus 19 ~~~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~-------~~~~~lil~Pt~~L~~q~~~~~~~~~~ 89 (414)
T 3oiy_A 19 GKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR-------KGKKSALVFPTVTLVKQTLERLQKLAD 89 (414)
T ss_dssp SSCCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHT-------TTCCEEEEESSHHHHHHHHHHHHHHCC
T ss_pred CCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhc-------CCCEEEEEECCHHHHHHHHHHHHHHcc
Confidence 45788999999999999999999999999999965555444432 378999999999999999999999753
No 23
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.33 E-value=1.9e-11 Score=78.25 Aligned_cols=77 Identities=22% Similarity=0.143 Sum_probs=58.7
Q ss_pred CCCCCHHHHHHHHHHhcCCceEEeCCCCCchHHHHHHHHHHHHhchhh--hhcCCCCEEEEeCChHHHHHHHHHHHhhc
Q psy16285 17 ELGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKEL--ARYMSGPILIVCYTNHALDQFVEGVLKYT 93 (97)
Q Consensus 17 ~~~l~~~Q~~~i~~~~~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~--~~~~~~~ilv~~~~~~~~~~~~~~l~~~~ 93 (97)
...+++.|.+++..+.+++++++.+|+|+|||..+...+...+..... ....+.++++++|+++++.|+.+.++++.
T Consensus 40 ~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 118 (228)
T 3iuy_A 40 ILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYS 118 (228)
T ss_dssp CCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHhc
Confidence 347899999999999999999999999999998754443332221100 01146789999999999999999999874
No 24
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.33 E-value=1.5e-11 Score=79.07 Aligned_cols=71 Identities=23% Similarity=0.198 Sum_probs=58.5
Q ss_pred CCCHHHHHHHHHHhcCCceEEeCCCCCchHHHHHH-HHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhhcc
Q psy16285 19 GLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALR-IVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKYTQ 94 (97)
Q Consensus 19 ~l~~~Q~~~i~~~~~~~~~~v~Gp~GtGKT~~~~~-~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~~~ 94 (97)
.+++.|.+++..+.++.++++.+|+|+|||..... ++..+.... .+.+++|++|+++++.|+.+.++++..
T Consensus 46 ~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~-----~~~~~lil~Pt~~L~~q~~~~~~~~~~ 117 (230)
T 2oxc_A 46 RPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLEN-----LSTQILILAPTREIAVQIHSVITAIGI 117 (230)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTS-----CSCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcC-----CCceEEEEeCCHHHHHHHHHHHHHHhc
Confidence 48999999999999999999999999999987433 344433321 367999999999999999999998864
No 25
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.32 E-value=4e-11 Score=77.89 Aligned_cols=78 Identities=22% Similarity=0.149 Sum_probs=59.7
Q ss_pred CCCCCHHHHHHHHHHhcCCceEEeCCCCCchHHHHHHHHHHHHhchhh-----hhcCCCCEEEEeCChHHHHHHHHHHHh
Q psy16285 17 ELGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKEL-----ARYMSGPILIVCYTNHALDQFVEGVLK 91 (97)
Q Consensus 17 ~~~l~~~Q~~~i~~~~~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~-----~~~~~~~ilv~~~~~~~~~~~~~~l~~ 91 (97)
...+++.|.+++..+.+++.+++.+|+|+|||..+...+...+..... ....+.+++|++|+++++.|+.+.+.+
T Consensus 43 ~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 122 (253)
T 1wrb_A 43 YQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQK 122 (253)
T ss_dssp CCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHHHH
Confidence 346899999999999999999999999999998755444333322110 001246899999999999999999998
Q ss_pred hcc
Q psy16285 92 YTQ 94 (97)
Q Consensus 92 ~~~ 94 (97)
+..
T Consensus 123 ~~~ 125 (253)
T 1wrb_A 123 FSL 125 (253)
T ss_dssp HHT
T ss_pred Hhc
Confidence 764
No 26
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.32 E-value=6.4e-12 Score=88.64 Aligned_cols=71 Identities=21% Similarity=0.325 Sum_probs=63.1
Q ss_pred CCCCCHHHHHHHHHHhcCCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhhc
Q psy16285 17 ELGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKYT 93 (97)
Q Consensus 17 ~~~l~~~Q~~~i~~~~~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~~ 93 (97)
.+.+++.|.+++..+..+...++.+|+|+|||.++..++...+.. ...+++|++|+..++.|+.+++.++.
T Consensus 111 ~~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~------~~~~vlvl~P~~~L~~Q~~~~~~~~~ 181 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN------YEGKILIIVPTTALTTQMADDFVDYR 181 (510)
T ss_dssp EECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHH------CSSEEEEEESSHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhC------CCCeEEEEECcHHHHHHHHHHHHHhh
Confidence 458999999999999988899999999999999988887777665 34599999999999999999999873
No 27
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.30 E-value=1.4e-11 Score=84.76 Aligned_cols=72 Identities=24% Similarity=0.259 Sum_probs=64.0
Q ss_pred ccCCCCCHHHHHHHHHHhcCCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhhc
Q psy16285 15 QEELGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKYT 93 (97)
Q Consensus 15 ~~~~~l~~~Q~~~i~~~~~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~~ 93 (97)
+..+.++++|.+++..+..+ ++++.+|+|+|||..+...+...+.. .+.+++|++|+..++.|+.+.+.++.
T Consensus 5 ~~~~~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~------~~~~~liv~P~~~L~~q~~~~~~~~~ 76 (494)
T 1wp9_A 5 RDLIQPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK------YGGKVLMLAPTKPLVLQHAESFRRLF 76 (494)
T ss_dssp HHHHCCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH------SCSCEEEECSSHHHHHHHHHHHHHHB
T ss_pred cCCCCccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc------CCCeEEEEECCHHHHHHHHHHHHHHh
Confidence 34578999999999999888 89999999999999988887777663 47899999999999999999999986
No 28
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.30 E-value=2.7e-11 Score=85.32 Aligned_cols=76 Identities=26% Similarity=0.281 Sum_probs=63.3
Q ss_pred CCCCCHHHHHHHHHHhcCCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhhcc
Q psy16285 17 ELGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKYTQ 94 (97)
Q Consensus 17 ~~~l~~~Q~~~i~~~~~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~~~ 94 (97)
.+.++++|.+++..+..+.++++.+|+|+|||..+...+...+..... ..+.+++|++|++.++.|+.+.+.+++.
T Consensus 2 ~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~--~~~~~~lil~P~~~L~~q~~~~~~~~~~ 77 (555)
T 3tbk_A 2 PLKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPC--GQKGKVVFFANQIPVYEQQATVFSRYFE 77 (555)
T ss_dssp CCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS--SCCCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhccc--CCCCEEEEEeCCHHHHHHHHHHHHHHhc
Confidence 467899999999999999999999999999999877776666554210 0167899999999999999999998854
No 29
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.30 E-value=2e-11 Score=81.95 Aligned_cols=74 Identities=15% Similarity=0.042 Sum_probs=61.5
Q ss_pred cCCCCCHHHHHHHHHHhcC-CceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhhcc
Q psy16285 16 EELGLNTIQFEAYKAALTR-EFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKYTQ 94 (97)
Q Consensus 16 ~~~~l~~~Q~~~i~~~~~~-~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~~~ 94 (97)
+...+++.|.+++..+.++ .++++.+|+|+|||..+...+....... ++.++++++|++.++.|+.+++.++..
T Consensus 25 g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~-----~~~~~lil~P~~~L~~q~~~~~~~~~~ 99 (367)
T 1hv8_A 25 GFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN-----NGIEAIILTPTRELAIQVADEIESLKG 99 (367)
T ss_dssp TCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS-----SSCCEEEECSCHHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhccc-----CCCcEEEEcCCHHHHHHHHHHHHHHhC
Confidence 3447899999999998877 6899999999999998766665554432 467999999999999999999998753
No 30
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.30 E-value=2.6e-11 Score=78.43 Aligned_cols=77 Identities=19% Similarity=0.099 Sum_probs=59.1
Q ss_pred CCCCCHHHHHHHHHHhcCCceEEeCCCCCchHHHHHHH-HHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhhc
Q psy16285 17 ELGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRI-VEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKYT 93 (97)
Q Consensus 17 ~~~l~~~Q~~~i~~~~~~~~~~v~Gp~GtGKT~~~~~~-~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~~ 93 (97)
...+++.|.+++..+.+++++++.+|+|+|||...... +..+..........+.+++|++|+++++.|+.+.++++.
T Consensus 49 ~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~ 126 (242)
T 3fe2_A 49 FTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYC 126 (242)
T ss_dssp CCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHH
Confidence 34589999999999999999999999999999875444 334332211111136789999999999999999988874
No 31
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.29 E-value=4e-11 Score=79.81 Aligned_cols=69 Identities=14% Similarity=0.087 Sum_probs=58.2
Q ss_pred cCCCCCHHHHHHHHHHhcCCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhhcc
Q psy16285 16 EELGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKYTQ 94 (97)
Q Consensus 16 ~~~~l~~~Q~~~i~~~~~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~~~ 94 (97)
+...+++.|.+++..+.+++++++.+|||+|||..+...+.. . +.++++++|++.++.|+.+.+.++..
T Consensus 13 g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~---~-------~~~~liv~P~~~L~~q~~~~~~~~~~ 81 (337)
T 2z0m_A 13 GFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILE---L-------GMKSLVVTPTRELTRQVASHIRDIGR 81 (337)
T ss_dssp TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHH---H-------TCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHh---h-------cCCEEEEeCCHHHHHHHHHHHHHHhh
Confidence 344689999999999999999999999999999875544332 2 67899999999999999999998753
No 32
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=99.28 E-value=8.6e-12 Score=91.00 Aligned_cols=70 Identities=23% Similarity=0.216 Sum_probs=59.6
Q ss_pred CCCHHHHHHHHHHhcCCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhhc
Q psy16285 19 GLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKYT 93 (97)
Q Consensus 19 ~l~~~Q~~~i~~~~~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~~ 93 (97)
.|++.|++++.. ..+.++|.|+||||||+++...+.+++..... ++.+||++++|+.++.++.+++.+..
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~---~~~~IL~lTfT~~Aa~em~~Rl~~~l 71 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGY---QARHIAAVTFTNKAAREMKERVGQTL 71 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCC---CGGGEEEEESSHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCC---CHHHeEEEeccHHHHHHHHHHHHHHc
Confidence 589999999884 36789999999999999998888888765322 46799999999999999999998764
No 33
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.28 E-value=3.4e-11 Score=81.54 Aligned_cols=74 Identities=20% Similarity=0.087 Sum_probs=60.7
Q ss_pred cCCCCCHHHHHHHHHHhcC--CceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhhc
Q psy16285 16 EELGLNTIQFEAYKAALTR--EFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKYT 93 (97)
Q Consensus 16 ~~~~l~~~Q~~~i~~~~~~--~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~~ 93 (97)
+...+++.|.+++..+..+ +++++.+|+|+|||..+...+...+.... .+.++++++|+..++.|+.+.+.++.
T Consensus 24 ~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~----~~~~~lil~P~~~L~~q~~~~~~~~~ 99 (395)
T 3pey_A 24 KFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPED----ASPQAICLAPSRELARQTLEVVQEMG 99 (395)
T ss_dssp TCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTC----CSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCC----CCccEEEECCCHHHHHHHHHHHHHHh
Confidence 4567899999999999887 89999999999999876655544433211 36789999999999999999999876
No 34
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.28 E-value=3.2e-11 Score=85.15 Aligned_cols=77 Identities=21% Similarity=0.247 Sum_probs=61.3
Q ss_pred cCCCCCHHHHHHHHHHhcCCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhhcc
Q psy16285 16 EELGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKYTQ 94 (97)
Q Consensus 16 ~~~~l~~~Q~~~i~~~~~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~~~ 94 (97)
..+.++++|.+++..+..+.++++.+|+|+|||..+...+...+..... ..+.+++|++|+..++.|+.+.+.+++.
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~--~~~~~~lil~P~~~L~~q~~~~~~~~~~ 80 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA--GRKAKVVFLATKVPVYEQQKNVFKHHFE 80 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS--SCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcc--cCCCeEEEEeCCHHHHHHHHHHHHHHhc
Confidence 4578899999999999999999999999999999877776666554210 0167899999999999999999998854
No 35
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.28 E-value=3.1e-11 Score=82.36 Aligned_cols=73 Identities=25% Similarity=0.063 Sum_probs=60.1
Q ss_pred CCCCHHHHHHHHHHhcCCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhhcc
Q psy16285 18 LGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKYTQ 94 (97)
Q Consensus 18 ~~l~~~Q~~~i~~~~~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~~~ 94 (97)
..+++.|.+++..+.++..+++.+|+|+|||..+...+...+.... .+.++++++|+..++.|+.+.++++..
T Consensus 42 ~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~----~~~~~lil~P~~~L~~q~~~~~~~~~~ 114 (400)
T 1s2m_A 42 EKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKL----NKIQALIMVPTRELALQTSQVVRTLGK 114 (400)
T ss_dssp CSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTS----CSCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhcc----CCccEEEEcCCHHHHHHHHHHHHHHhc
Confidence 3589999999999999999999999999999876555544443311 356899999999999999999998764
No 36
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.27 E-value=2.4e-11 Score=84.98 Aligned_cols=69 Identities=30% Similarity=0.344 Sum_probs=60.5
Q ss_pred cCCCCCHHHHHHHHHHhcCCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhhcc
Q psy16285 16 EELGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKYTQ 94 (97)
Q Consensus 16 ~~~~l~~~Q~~~i~~~~~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~~~ 94 (97)
..+.++++|.+++..+..++.+++.+|+|+|||.++...+... +.+++|++|+..++.|+.+++.+++.
T Consensus 90 ~~~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~----------~~~~Lvl~P~~~L~~Q~~~~~~~~~~ 158 (472)
T 2fwr_A 90 AEISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL----------STPTLIVVPTLALAEQWKERLGIFGE 158 (472)
T ss_dssp CCCCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH----------CSCEEEEESSHHHHHHHHHHGGGGCG
T ss_pred CCCCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc----------CCCEEEEECCHHHHHHHHHHHHhCCC
Confidence 4568999999999999888889999999999999877776654 56899999999999999999998643
No 37
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.27 E-value=3.8e-11 Score=81.52 Aligned_cols=72 Identities=19% Similarity=0.167 Sum_probs=59.5
Q ss_pred CCCCHHHHHHHHHHhcCCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhhc
Q psy16285 18 LGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKYT 93 (97)
Q Consensus 18 ~~l~~~Q~~~i~~~~~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~~ 93 (97)
..+++.|.+++..+..+..+++.+|+|+|||..+...+...+.... ...++++++|++.++.|+.+.+.++.
T Consensus 29 ~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~----~~~~~lil~P~~~L~~q~~~~~~~~~ 100 (391)
T 1xti_A 29 EHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVT----GQVSVLVMCHTRELAFQISKEYERFS 100 (391)
T ss_dssp CSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCT----TCCCEEEECSCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccC----CCeeEEEECCCHHHHHHHHHHHHHHH
Confidence 3489999999999999999999999999999876555554443311 35689999999999999999998875
No 38
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.26 E-value=3.6e-11 Score=82.36 Aligned_cols=73 Identities=26% Similarity=0.164 Sum_probs=60.0
Q ss_pred CCCCHHHHHHHHHHhcCCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhhcc
Q psy16285 18 LGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKYTQ 94 (97)
Q Consensus 18 ~~l~~~Q~~~i~~~~~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~~~ 94 (97)
..+++.|.+++..+.+++.+++.+|+|+|||......+...+.... .+.++++++|+++++.|+.+.+.+++.
T Consensus 58 ~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~----~~~~~lil~Pt~~L~~q~~~~~~~~~~ 130 (410)
T 2j0s_A 58 EKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQV----RETQALILAPTRELAVQIQKGLLALGD 130 (410)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTS----CSCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhcc----CCceEEEEcCcHHHHHHHHHHHHHHhc
Confidence 3489999999999999999999999999999876655544433211 367999999999999999999998763
No 39
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=99.26 E-value=1.7e-11 Score=90.31 Aligned_cols=70 Identities=29% Similarity=0.305 Sum_probs=59.6
Q ss_pred CCCHHHHHHHHHHhcCCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhhc
Q psy16285 19 GLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKYT 93 (97)
Q Consensus 19 ~l~~~Q~~~i~~~~~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~~ 93 (97)
.|++.|++++.. ..+.++|.|+||||||+++...+.+++..... ++.+||++++||.|+.++.+++.+..
T Consensus 11 ~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~---~p~~IL~vTFTnkAA~Em~~Rl~~~l 80 (724)
T 1pjr_A 11 HLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHV---APWNILAITFTNKAAREMRERVQSLL 80 (724)
T ss_dssp TSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCC---CGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCC---CHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 589999999875 35789999999999999999988888875322 46789999999999999999998763
No 40
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.25 E-value=5.2e-11 Score=81.39 Aligned_cols=75 Identities=19% Similarity=0.069 Sum_probs=61.1
Q ss_pred cCCCCCHHHHHHHHHHhcCCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhhcc
Q psy16285 16 EELGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKYTQ 94 (97)
Q Consensus 16 ~~~~l~~~Q~~~i~~~~~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~~~ 94 (97)
+...+++.|.+++..+.++..+++.+|+|+|||..+...+...+.... ...++++++|++.++.|+.+.+.+++.
T Consensus 59 ~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~----~~~~~lil~P~~~L~~q~~~~~~~~~~ 133 (414)
T 3eiq_A 59 GFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDL----KATQALVLAPTRELAQQIQKVVMALGD 133 (414)
T ss_dssp TCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTS----CSCCEEEECSSHHHHHHHHHHHHHHGG
T ss_pred CCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcC----CceeEEEEeChHHHHHHHHHHHHHHhc
Confidence 345689999999999999999999999999999875555444433311 367899999999999999999998863
No 41
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.23 E-value=5.3e-11 Score=80.77 Aligned_cols=74 Identities=18% Similarity=0.036 Sum_probs=59.7
Q ss_pred CCCCCHHHHHHHHHHhcCCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhhcc
Q psy16285 17 ELGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKYTQ 94 (97)
Q Consensus 17 ~~~l~~~Q~~~i~~~~~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~~~ 94 (97)
...+++.|.+++..+.++..+++.+|+|+|||..+...+...+.... .+.++++++|++.++.|+.+.+.++..
T Consensus 41 ~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~----~~~~~lil~P~~~L~~q~~~~~~~~~~ 114 (394)
T 1fuu_A 41 FEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSV----KAPQALMLAPTRELALQIQKVVMALAF 114 (394)
T ss_dssp CCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTC----CSCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccC----CCCCEEEEcCCHHHHHHHHHHHHHHhc
Confidence 45789999999999999999999999999999875444433333211 367999999999999999999988753
No 42
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.22 E-value=9.4e-11 Score=89.82 Aligned_cols=73 Identities=19% Similarity=0.116 Sum_probs=64.5
Q ss_pred ccCCCCCHHHHHHHHHHhcCCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhhcc
Q psy16285 15 QEELGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKYTQ 94 (97)
Q Consensus 15 ~~~~~l~~~Q~~~i~~~~~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~~~ 94 (97)
...+.+++.|.+++..+..+..++|.||||+|||.++...+...+.. +.+++|++|++.++.|+.+++.+++.
T Consensus 180 ~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~-------g~rvlvl~PtraLa~Q~~~~l~~~~~ 252 (1108)
T 3l9o_A 180 TYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN-------KQRVIYTSPIKALSNQKYRELLAEFG 252 (1108)
T ss_dssp CCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHT-------TCEEEEEESSHHHHHHHHHHHHHHTS
T ss_pred hCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhc-------CCeEEEEcCcHHHHHHHHHHHHHHhC
Confidence 45678999999999999999999999999999999877776666654 78999999999999999999998764
No 43
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.22 E-value=1.5e-10 Score=88.13 Aligned_cols=72 Identities=19% Similarity=0.117 Sum_probs=63.0
Q ss_pred cCCCCCHHHHHHHHHHhcCCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhhcc
Q psy16285 16 EELGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKYTQ 94 (97)
Q Consensus 16 ~~~~l~~~Q~~~i~~~~~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~~~ 94 (97)
-.+.+++.|.+++..+.++.+++|.+|||+|||.++...+...+.. +.++++++|++.++.|+.+++.+++.
T Consensus 83 ~~f~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~-------g~rvL~l~PtkaLa~Q~~~~l~~~~~ 154 (1010)
T 2xgj_A 83 YPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN-------KQRVIYTSPIKALSNQKYRELLAEFG 154 (1010)
T ss_dssp CSSCCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHT-------TCEEEEEESSHHHHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhcc-------CCeEEEECChHHHHHHHHHHHHHHhC
Confidence 4577999999999999999999999999999999876666655544 68999999999999999999998764
No 44
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.22 E-value=1.1e-10 Score=79.71 Aligned_cols=75 Identities=19% Similarity=0.026 Sum_probs=59.1
Q ss_pred cCCCCCHHHHHHHHHHhcC--CceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhhc
Q psy16285 16 EELGLNTIQFEAYKAALTR--EFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKYT 93 (97)
Q Consensus 16 ~~~~l~~~Q~~~i~~~~~~--~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~~ 93 (97)
+...+++.|.+++..+..+ .++++.+|+|+|||..+...+...+.... ...++++++|+++++.|+.+.+.++.
T Consensus 44 g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~----~~~~~lil~P~~~L~~q~~~~~~~~~ 119 (412)
T 3fht_A 44 GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN----KYPQCLCLSPTYELALQTGKVIEQMG 119 (412)
T ss_dssp TCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTS----CSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcC----CCCCEEEECCCHHHHHHHHHHHHHHH
Confidence 3457899999999999876 89999999999999876444433333211 35589999999999999998888875
Q ss_pred c
Q psy16285 94 Q 94 (97)
Q Consensus 94 ~ 94 (97)
.
T Consensus 120 ~ 120 (412)
T 3fht_A 120 K 120 (412)
T ss_dssp T
T ss_pred h
Confidence 3
No 45
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.21 E-value=1.8e-10 Score=83.84 Aligned_cols=78 Identities=26% Similarity=0.273 Sum_probs=62.7
Q ss_pred ccCCCCCHHHHHHHHHHhcCCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhhcc
Q psy16285 15 QEELGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKYTQ 94 (97)
Q Consensus 15 ~~~~~l~~~Q~~~i~~~~~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~~~ 94 (97)
.+...++++|.+++..+..+.++++.+|+|+|||..+...+...+..... ..+.+++|++|+..++.|+.+.+.++..
T Consensus 9 ~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~--~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~ 86 (696)
T 2ykg_A 9 YSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQ--GQKGKVVFFANQIPVYEQNKSVFSKYFE 86 (696)
T ss_dssp TC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCT--TCCCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred cCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCcc--CCCCeEEEEECCHHHHHHHHHHHHHHhc
Confidence 35567899999999999999999999999999999877777665544210 0127899999999999999999998863
No 46
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.20 E-value=3.6e-11 Score=87.49 Aligned_cols=79 Identities=25% Similarity=0.318 Sum_probs=63.6
Q ss_pred ccCCCCCHHHHHHHHHHhcCCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHH-HHHHHhhc
Q psy16285 15 QEELGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQF-VEGVLKYT 93 (97)
Q Consensus 15 ~~~~~l~~~Q~~~i~~~~~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~-~~~l~~~~ 93 (97)
...+.++++|.+++..+..+.+++|.+|+|+|||..+...+..++..... ...+.+++|++|+..++.|+ .+.+++++
T Consensus 3 ~~~~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~-~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~ 81 (699)
T 4gl2_A 3 GAMLQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKK-ASEPGKVIVLVNKVLLVEQLFRKEFQPFL 81 (699)
T ss_dssp ----CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHH-HTCCCCBCCEESCSHHHHHHHHHTHHHHH
T ss_pred CCCCCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccc-cCCCCeEEEEECCHHHHHHHHHHHHHHHc
Confidence 35678999999999999999999999999999999888887766655321 11237899999999999999 99999887
Q ss_pred c
Q psy16285 94 Q 94 (97)
Q Consensus 94 ~ 94 (97)
.
T Consensus 82 ~ 82 (699)
T 4gl2_A 82 K 82 (699)
T ss_dssp T
T ss_pred C
Confidence 5
No 47
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.20 E-value=1.9e-10 Score=80.17 Aligned_cols=78 Identities=18% Similarity=0.087 Sum_probs=60.9
Q ss_pred CCCCCHHHHHHHHHHhcCCceEEeCCCCCchHHHHH-HHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhhcc
Q psy16285 17 ELGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVAL-RIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKYTQ 94 (97)
Q Consensus 17 ~~~l~~~Q~~~i~~~~~~~~~~v~Gp~GtGKT~~~~-~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~~~ 94 (97)
...+++.|.+++..+.+++.+++.+|+|+|||.... .++..+..........+.+++|++|+++++.|+.+.++++..
T Consensus 76 ~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~ 154 (434)
T 2db3_A 76 YKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAF 154 (434)
T ss_dssp CCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHHhc
Confidence 345899999999999999999999999999998543 345555543211111356899999999999999999998764
No 48
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.19 E-value=9.2e-11 Score=89.10 Aligned_cols=73 Identities=16% Similarity=0.049 Sum_probs=63.2
Q ss_pred ccCCCCCHHHHHHHHHHhcCCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhhcc
Q psy16285 15 QEELGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKYTQ 94 (97)
Q Consensus 15 ~~~~~l~~~Q~~~i~~~~~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~~~ 94 (97)
.-.+.+++.|.+++..+.+++.+++.+|||+|||.++...+..+... +.+++|++|+..++.|+.+++.+++.
T Consensus 35 ~~~f~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~-------g~~vlvl~PtraLa~Q~~~~l~~~~~ 107 (997)
T 4a4z_A 35 SWPFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRN-------MTKTIYTSPIKALSNQKFRDFKETFD 107 (997)
T ss_dssp CCSSCCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHT-------TCEEEEEESCGGGHHHHHHHHHTTC-
T ss_pred hCCCCCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhc-------CCeEEEEeCCHHHHHHHHHHHHHHcC
Confidence 45678999999999999999999999999999999876666665544 67899999999999999999998753
No 49
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.19 E-value=1.6e-10 Score=85.72 Aligned_cols=77 Identities=21% Similarity=0.247 Sum_probs=62.6
Q ss_pred cCCCCCHHHHHHHHHHhcCCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhhcc
Q psy16285 16 EELGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKYTQ 94 (97)
Q Consensus 16 ~~~~l~~~Q~~~i~~~~~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~~~ 94 (97)
....++++|.+++..+..+.++++.+|+|+|||.++...+...+..... ..+.+++|++|+..++.|+.+.+.+++.
T Consensus 245 g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~--~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~ 321 (797)
T 4a2q_A 245 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA--GRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (797)
T ss_dssp ---CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS--SCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred CCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccc--cCCCeEEEEeCCHHHHHHHHHHHHHhcc
Confidence 3678999999999999999999999999999999877777666554210 0167899999999999999999998864
No 50
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.18 E-value=2.3e-10 Score=78.35 Aligned_cols=79 Identities=18% Similarity=0.091 Sum_probs=59.6
Q ss_pred cCCCCCHHHHHHHHHHhcCCceEEeCCCCCchHHHHH-HHHHHHHhchhh-------------hhcCCCCEEEEeCChHH
Q psy16285 16 EELGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVAL-RIVEGFLKNKEL-------------ARYMSGPILIVCYTNHA 81 (97)
Q Consensus 16 ~~~~l~~~Q~~~i~~~~~~~~~~v~Gp~GtGKT~~~~-~~~~~~~~~~~~-------------~~~~~~~ilv~~~~~~~ 81 (97)
+...+++.|.+++..+..++.+++.+|||+|||.... .++..+...... ......++++++|++++
T Consensus 34 ~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 113 (417)
T 2i4i_A 34 RYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTREL 113 (417)
T ss_dssp TCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSHHH
T ss_pred CCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcHHH
Confidence 3457899999999999999999999999999998543 344444432100 00013579999999999
Q ss_pred HHHHHHHHHhhcc
Q psy16285 82 LDQFVEGVLKYTQ 94 (97)
Q Consensus 82 ~~~~~~~l~~~~~ 94 (97)
+.|+.+.+.++..
T Consensus 114 ~~q~~~~~~~~~~ 126 (417)
T 2i4i_A 114 AVQIYEEARKFSY 126 (417)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC
Confidence 9999999988753
No 51
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.17 E-value=2.5e-10 Score=76.39 Aligned_cols=73 Identities=19% Similarity=0.048 Sum_probs=57.4
Q ss_pred CCCCCHHHHHHHHHHhcC--CceEEeCCCCCchHHHHH-HHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhhc
Q psy16285 17 ELGLNTIQFEAYKAALTR--EFAIIQGPPGTGKTYVAL-RIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKYT 93 (97)
Q Consensus 17 ~~~l~~~Q~~~i~~~~~~--~~~~v~Gp~GtGKT~~~~-~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~~ 93 (97)
...+++.|.+++..+..+ .++++.+|+|||||.... .++..+.... ...+++|++|+++++.|+.+.+.++.
T Consensus 112 ~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~-----~~~~~lil~PtreLa~Q~~~~~~~l~ 186 (300)
T 3fmo_B 112 FNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN-----KYPQCLCLSPTYELALQTGKVIEQMG 186 (300)
T ss_dssp CCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTS-----CSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccC-----CCceEEEEcCcHHHHHHHHHHHHHHH
Confidence 346788899999999876 799999999999998643 4444443321 34589999999999999999988876
Q ss_pred c
Q psy16285 94 Q 94 (97)
Q Consensus 94 ~ 94 (97)
.
T Consensus 187 ~ 187 (300)
T 3fmo_B 187 K 187 (300)
T ss_dssp T
T ss_pred h
Confidence 4
No 52
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.16 E-value=2.3e-10 Score=81.55 Aligned_cols=77 Identities=26% Similarity=0.201 Sum_probs=57.8
Q ss_pred CCCCCHHHHHHHHHHh--cCCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhhc
Q psy16285 17 ELGLNTIQFEAYKAAL--TREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKYT 93 (97)
Q Consensus 17 ~~~l~~~Q~~~i~~~~--~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~~ 93 (97)
...+++.|.+++..+. .+..+++.+|||+|||......+...+...........+++|++|+.+++.|+.+.+.++.
T Consensus 92 ~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~~~ 170 (563)
T 3i5x_A 92 FPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIH 170 (563)
T ss_dssp CSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHHHH
Confidence 3458999999999988 5678999999999999865544433333321111123589999999999999999998863
No 53
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.15 E-value=2.9e-10 Score=81.60 Aligned_cols=77 Identities=26% Similarity=0.201 Sum_probs=58.2
Q ss_pred CCCCCHHHHHHHHHHh--cCCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhhc
Q psy16285 17 ELGLNTIQFEAYKAAL--TREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKYT 93 (97)
Q Consensus 17 ~~~l~~~Q~~~i~~~~--~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~~ 93 (97)
...+++.|.+++..+. .+..+++.+|||+|||......+...+...........+++|++|+.+++.|+.+.+.++.
T Consensus 41 ~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~ 119 (579)
T 3sqw_A 41 FPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIH 119 (579)
T ss_dssp CSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHHHH
Confidence 3458999999999998 5678999999999999865544433333321111124589999999999999999999864
No 54
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.13 E-value=7e-11 Score=84.88 Aligned_cols=79 Identities=22% Similarity=0.195 Sum_probs=50.6
Q ss_pred cCCCCCHHHHHHHHHHhc-----CCceEEeCCCCCchHHHHHHHHHHHHhchhh--hhcCCCCEEEEeCChHHHHHHH-H
Q psy16285 16 EELGLNTIQFEAYKAALT-----REFAIIQGPPGTGKTYVALRIVEGFLKNKEL--ARYMSGPILIVCYTNHALDQFV-E 87 (97)
Q Consensus 16 ~~~~l~~~Q~~~i~~~~~-----~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~--~~~~~~~ilv~~~~~~~~~~~~-~ 87 (97)
....++++|.+++..+.. .+.+++.+|+|+|||.++..++..+....+. ......++||++|++.++.|+. +
T Consensus 175 ~~~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~ 254 (590)
T 3h1t_A 175 SGYSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDK 254 (590)
T ss_dssp ----CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------
T ss_pred CCCCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHH
Confidence 456899999999998875 4678999999999999998888888775310 0003689999999999999999 7
Q ss_pred HHHhhcc
Q psy16285 88 GVLKYTQ 94 (97)
Q Consensus 88 ~l~~~~~ 94 (97)
.++.++.
T Consensus 255 ~~~~~~~ 261 (590)
T 3h1t_A 255 TFTPFGD 261 (590)
T ss_dssp CCTTTCS
T ss_pred HHHhcch
Confidence 7766653
No 55
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.13 E-value=3.2e-10 Score=73.19 Aligned_cols=74 Identities=20% Similarity=0.210 Sum_probs=57.1
Q ss_pred CCCCCHHHHHHHHHHhcCCceEEeCCCCCchHHHHHHHHHH-HHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhhc
Q psy16285 17 ELGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEG-FLKNKELARYMSGPILIVCYTNHALDQFVEGVLKYT 93 (97)
Q Consensus 17 ~~~l~~~Q~~~i~~~~~~~~~~v~Gp~GtGKT~~~~~~~~~-~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~~ 93 (97)
.+++.+.|.+++..+.+++.+++.||+|||||+++...+.. ...... ....++++++|++.++.++.+++.+..
T Consensus 59 ~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~---~~~~~~l~~~p~~~la~q~~~~~~~~~ 133 (235)
T 3llm_A 59 LLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR---AAECNIVVTQPRRISAVSVAERVAFER 133 (235)
T ss_dssp TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC---GGGCEEEEEESSHHHHHHHHHHHHHTT
T ss_pred cCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC---CCceEEEEeccchHHHHHHHHHHHHHh
Confidence 45678889999999999999999999999999865555433 333211 023489999999999999999887654
No 56
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.13 E-value=3e-10 Score=84.57 Aligned_cols=72 Identities=18% Similarity=0.065 Sum_probs=61.6
Q ss_pred cCCCCCHHHHHHHHHHhcC------CceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHH
Q psy16285 16 EELGLNTIQFEAYKAALTR------EFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGV 89 (97)
Q Consensus 16 ~~~~l~~~Q~~~i~~~~~~------~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l 89 (97)
..+.+++.|.+++..+..+ .+.+++||+|+|||.++...+...+.. +.++++++|+..++.|+.+.+
T Consensus 365 lpf~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~-------g~qvlvlaPtr~La~Q~~~~l 437 (780)
T 1gm5_A 365 LPFKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA-------GFQTAFMVPTSILAIQHYRRT 437 (780)
T ss_dssp SSSCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH-------TSCEEEECSCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc-------CCeEEEEeCcHHHHHHHHHHH
Confidence 4568999999999988753 488999999999999877776666655 679999999999999999999
Q ss_pred Hhhcc
Q psy16285 90 LKYTQ 94 (97)
Q Consensus 90 ~~~~~ 94 (97)
.+++.
T Consensus 438 ~~~~~ 442 (780)
T 1gm5_A 438 VESFS 442 (780)
T ss_dssp HHHHT
T ss_pred HHHhh
Confidence 98864
No 57
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.13 E-value=5.7e-11 Score=84.30 Aligned_cols=72 Identities=18% Similarity=0.095 Sum_probs=58.9
Q ss_pred CCCHHHHHHHHHHhcC--CceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhhcc
Q psy16285 19 GLNTIQFEAYKAALTR--EFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKYTQ 94 (97)
Q Consensus 19 ~l~~~Q~~~i~~~~~~--~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~~~ 94 (97)
.+++.|.+++..+.++ +++++.+|+|+|||.++...+...+.... ...++++++|++.++.|+.+++.+++.
T Consensus 141 ~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~----~~~~vLvl~P~~~L~~Q~~~~~~~~~~ 214 (508)
T 3fho_A 141 XXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASV----PKPQAICLAPSRELARQIMDVVTEMGK 214 (508)
T ss_dssp ECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTC----CSCCEEEECSCHHHHHHHHHHHHHHST
T ss_pred CcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCC----CCceEEEEECcHHHHHHHHHHHHHhCC
Confidence 4788899999999887 89999999999999986555554443321 356899999999999999999999864
No 58
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.12 E-value=2.8e-10 Score=85.94 Aligned_cols=77 Identities=21% Similarity=0.247 Sum_probs=61.7
Q ss_pred cCCCCCHHHHHHHHHHhcCCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhhcc
Q psy16285 16 EELGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKYTQ 94 (97)
Q Consensus 16 ~~~~l~~~Q~~~i~~~~~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~~~ 94 (97)
..+.++++|.+++..+..+.++++.+|+|+|||..+...+...+..... ..+.+++|++|+..++.|+.+.+.+++.
T Consensus 245 ~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~--~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~ 321 (936)
T 4a2w_A 245 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA--GRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (936)
T ss_dssp ---CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCS--SCCCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccc--cCCCeEEEEeCCHHHHHHHHHHHHHHhc
Confidence 4778999999999999999999999999999998877766655544210 0167899999999999999999998864
No 59
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.12 E-value=4.1e-10 Score=86.31 Aligned_cols=71 Identities=18% Similarity=0.086 Sum_probs=61.5
Q ss_pred cCCCCCHHHHHHHHHHhcCCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhhc
Q psy16285 16 EELGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKYT 93 (97)
Q Consensus 16 ~~~~l~~~Q~~~i~~~~~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~~ 93 (97)
..+.+++.|.+++..+..+..+++.+|||+|||..+...+...... +.+++|++|+++++.|+.+++.++.
T Consensus 75 ~gf~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~~-------~~~~Lil~PtreLa~Q~~~~l~~l~ 145 (1104)
T 4ddu_A 75 FGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARK-------GKKSALVFPTVTLVKQTLERLQKLA 145 (1104)
T ss_dssp SSSCCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHTT-------TCCEEEEESSHHHHHHHHHHHHTTS
T ss_pred cCCCCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHhc-------CCeEEEEechHHHHHHHHHHHHHhh
Confidence 3567899999999999999999999999999999666655555533 7899999999999999999999965
No 60
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.11 E-value=3.4e-10 Score=82.96 Aligned_cols=70 Identities=24% Similarity=0.234 Sum_probs=57.3
Q ss_pred CCCCHHHHHHHHH-HhcCCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhhc
Q psy16285 18 LGLNTIQFEAYKA-ALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKYT 93 (97)
Q Consensus 18 ~~l~~~Q~~~i~~-~~~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~~ 93 (97)
..+++.|.+++.. +.++++++|.||||+|||+.+...+...+.. .+.++++++|++.++.++.++++++.
T Consensus 29 ~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~------~~~~il~i~P~r~La~q~~~~~~~~~ 99 (715)
T 2va8_A 29 KKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK------NGGKAIYVTPLRALTNEKYLTFKDWE 99 (715)
T ss_dssp CBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHH------SCSEEEEECSCHHHHHHHHHHHGGGG
T ss_pred CCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHH------CCCeEEEEeCcHHHHHHHHHHHHHhh
Confidence 3789999999998 5678899999999999999875554433332 26799999999999999999996543
No 61
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.09 E-value=4.1e-10 Score=78.94 Aligned_cols=72 Identities=19% Similarity=0.041 Sum_probs=54.6
Q ss_pred CCCCHHHHHHHHHHhcC--CceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhhc
Q psy16285 18 LGLNTIQFEAYKAALTR--EFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKYT 93 (97)
Q Consensus 18 ~~l~~~Q~~~i~~~~~~--~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~~ 93 (97)
..+++.|.+++..+..+ .++++.||+|+|||......+...+.... ...+++|++|+++++.|+.+.+.++.
T Consensus 113 ~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~----~~~~~lil~Pt~~La~Q~~~~~~~~~ 186 (479)
T 3fmp_B 113 NRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN----KYPQCLCLSPTYELALQTGKVIEQMG 186 (479)
T ss_dssp CSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTS----CSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcC----CCCcEEEEeChHHHHHHHHHHHHHHH
Confidence 34666799999999876 79999999999999874443333322211 24489999999999999988877765
No 62
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.05 E-value=2.7e-10 Score=83.67 Aligned_cols=69 Identities=22% Similarity=0.293 Sum_probs=57.8
Q ss_pred CCCCHHHHHHHHH-HhcCCceEEeCCCCCchHHHH-HHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhhc
Q psy16285 18 LGLNTIQFEAYKA-ALTREFAIIQGPPGTGKTYVA-LRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKYT 93 (97)
Q Consensus 18 ~~l~~~Q~~~i~~-~~~~~~~~v~Gp~GtGKT~~~-~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~~ 93 (97)
..+++.|.+++.. +.+++++++.||||+|||..+ ..++..+... +.++++++|++.++.++.++++++.
T Consensus 22 ~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-------~~~~l~i~P~raLa~q~~~~~~~l~ 92 (720)
T 2zj8_A 22 ESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ-------GGKAVYIVPLKALAEEKFQEFQDWE 92 (720)
T ss_dssp CBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH-------CSEEEEECSSGGGHHHHHHHTGGGG
T ss_pred CCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC-------CCEEEEEcCcHHHHHHHHHHHHHHH
Confidence 3789999999998 678899999999999999987 4444454434 6799999999999999999997553
No 63
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.05 E-value=2.2e-10 Score=83.93 Aligned_cols=69 Identities=20% Similarity=0.124 Sum_probs=57.2
Q ss_pred CCCCHHHHHHHHHHhcCCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhhc
Q psy16285 18 LGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKYT 93 (97)
Q Consensus 18 ~~l~~~Q~~~i~~~~~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~~ 93 (97)
..+++.|.+++..+.+++++++.+|||+|||+.+...+...+.. +.++++++|++.++.++.++++++.
T Consensus 24 ~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~-------~~~~l~i~P~r~La~q~~~~~~~~~ 92 (702)
T 2p6r_A 24 EELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK-------GGKSLYVVPLRALAGEKYESFKKWE 92 (702)
T ss_dssp -CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT-------TCCEEEEESSHHHHHHHHHHHTTTT
T ss_pred CCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh-------CCcEEEEeCcHHHHHHHHHHHHHHH
Confidence 37889999999998889999999999999999875544443333 5799999999999999999996543
No 64
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.05 E-value=9.4e-10 Score=84.01 Aligned_cols=70 Identities=23% Similarity=0.151 Sum_probs=59.3
Q ss_pred CCCCCHHHHHHHHHHhcCCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhhcc
Q psy16285 17 ELGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKYTQ 94 (97)
Q Consensus 17 ~~~l~~~Q~~~i~~~~~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~~~ 94 (97)
++.+ +.|.+++..+..++++++.+|+|+|||..+.-++..+... +.++++++|+++++.|+.+.+.+++.
T Consensus 55 g~~p-~iQ~~ai~~il~g~dvlv~apTGSGKTl~~lp~l~~~~~~-------~~~~lil~PtreLa~Q~~~~l~~l~~ 124 (1054)
T 1gku_B 55 GEPR-AIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFLALK-------GKRCYVIFPTSLLVIQAAETIRKYAE 124 (1054)
T ss_dssp CSCC-HHHHHHHHHHHTTCCEECCCCBTSCSHHHHHHHHHHHHTT-------SCCEEEEESCHHHHHHHHHHHHHHHT
T ss_pred CCCH-HHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHHhhc-------CCeEEEEeccHHHHHHHHHHHHHHHh
Confidence 4457 9999999999999999999999999997555555555443 67999999999999999999998864
No 65
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.04 E-value=1.4e-09 Score=83.77 Aligned_cols=72 Identities=21% Similarity=0.124 Sum_probs=59.8
Q ss_pred cCCCCCHHHHHHHHHHhc----CC--ceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHH
Q psy16285 16 EELGLNTIQFEAYKAALT----RE--FAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGV 89 (97)
Q Consensus 16 ~~~~l~~~Q~~~i~~~~~----~~--~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l 89 (97)
-.+.+++.|.+++..+.. +. ..++.||+|+|||.++...+..+... +.+++|++||..++.|+.+.+
T Consensus 600 f~~~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~-------g~~vlvlvPt~~La~Q~~~~~ 672 (1151)
T 2eyq_A 600 FPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN-------HKQVAVLVPTTLLAQQHYDNF 672 (1151)
T ss_dssp CCSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT-------TCEEEEECSSHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh-------CCeEEEEechHHHHHHHHHHH
Confidence 356779999999998875 43 78999999999999877665555444 679999999999999999999
Q ss_pred Hhhcc
Q psy16285 90 LKYTQ 94 (97)
Q Consensus 90 ~~~~~ 94 (97)
.+++.
T Consensus 673 ~~~~~ 677 (1151)
T 2eyq_A 673 RDRFA 677 (1151)
T ss_dssp HHHST
T ss_pred HHHhh
Confidence 87654
No 66
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=99.04 E-value=6.1e-10 Score=86.04 Aligned_cols=75 Identities=17% Similarity=0.206 Sum_probs=58.5
Q ss_pred ccCCCCCHHHHHHHHHHhcCCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhh
Q psy16285 15 QEELGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKY 92 (97)
Q Consensus 15 ~~~~~l~~~Q~~~i~~~~~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~ 92 (97)
+....+++.|.++|.. .+++++|.|++|||||+++...+..++..... .....+|+++++|+.++.++.+++.+.
T Consensus 6 ~~~~~~t~eQ~~~i~~--~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~-~~~~~~il~~Tft~~aa~e~~~ri~~~ 80 (1232)
T 3u4q_A 6 PADSTWTDDQWNAIVS--TGQDILVAAAAGSGKTAVLVERMIRKITAEEN-PIDVDRLLVVTFTNASAAEMKHRIAEA 80 (1232)
T ss_dssp ----CCCHHHHHHHHC--CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSS-CCCGGGEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCC-CCCccceEEEeccHHHHHHHHHHHHHH
Confidence 3567899999999885 37799999999999999988877777665210 013568999999999999999999874
No 67
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=98.97 E-value=6.2e-09 Score=73.21 Aligned_cols=73 Identities=18% Similarity=0.238 Sum_probs=59.7
Q ss_pred cCCCCCHHHHHHHHHHh----cCCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHh
Q psy16285 16 EELGLNTIQFEAYKAAL----TREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLK 91 (97)
Q Consensus 16 ~~~~l~~~Q~~~i~~~~----~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~ 91 (97)
-...++++|.+++..+. .+...++..++|+|||..+..++..+.... ...++||+||+. ++.||.+.+.+
T Consensus 34 ~~~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~-----~~~~~LIv~P~~-l~~qw~~e~~~ 107 (500)
T 1z63_A 34 IKANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKEN-----ELTPSLVICPLS-VLKNWEEELSK 107 (500)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTT-----CCSSEEEEECST-THHHHHHHHHH
T ss_pred hhccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcC-----CCCCEEEEccHH-HHHHHHHHHHH
Confidence 45579999999988763 356788999999999999888888776542 357899999954 78999999999
Q ss_pred hcc
Q psy16285 92 YTQ 94 (97)
Q Consensus 92 ~~~ 94 (97)
+..
T Consensus 108 ~~~ 110 (500)
T 1z63_A 108 FAP 110 (500)
T ss_dssp HCT
T ss_pred HCC
Confidence 864
No 68
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=98.91 E-value=7.2e-09 Score=78.60 Aligned_cols=72 Identities=19% Similarity=0.165 Sum_probs=61.2
Q ss_pred cCCCCCHHHHHHHHHHhcC--CceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhhc
Q psy16285 16 EELGLNTIQFEAYKAALTR--EFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKYT 93 (97)
Q Consensus 16 ~~~~l~~~Q~~~i~~~~~~--~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~~ 93 (97)
..+.++++|.+++..+... ..+++.+++|+|||.++..++..+...+ ...++||+||+ .++.||.+.+.+.+
T Consensus 150 ~~~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g-----~~~rvLIVvP~-sLl~Qw~~E~~~~f 223 (968)
T 3dmq_A 150 QRTSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSG-----AAERVLIIVPE-TLQHQWLVEMLRRF 223 (968)
T ss_dssp CSSCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTS-----SCCCEEEECCT-TTHHHHHHHHHHHS
T ss_pred CCCCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhC-----CCCeEEEEeCH-HHHHHHHHHHHHHh
Confidence 4678999999999988763 4789999999999999998888887663 35689999999 88999999996654
No 69
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.90 E-value=1.7e-08 Score=62.45 Aligned_cols=50 Identities=20% Similarity=0.149 Sum_probs=38.3
Q ss_pred CHHHHHHHHHHh---------cCCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEe
Q psy16285 21 NTIQFEAYKAAL---------TREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVC 76 (97)
Q Consensus 21 ~~~Q~~~i~~~~---------~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~ 76 (97)
++.|.+++..+. .+..+++.|||||||||++..++..+... .+..++++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~------~g~~~~~~~ 74 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEK------KGIRGYFFD 74 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHH------SCCCCCEEE
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHH------cCCeEEEEE
Confidence 567777777664 25689999999999999999999988744 255666655
No 70
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=98.88 E-value=4.6e-09 Score=76.08 Aligned_cols=68 Identities=13% Similarity=0.191 Sum_probs=56.1
Q ss_pred CCCCCHHHHHHHHHHhcCCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhhcc
Q psy16285 17 ELGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKYTQ 94 (97)
Q Consensus 17 ~~~l~~~Q~~~i~~~~~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~~~ 94 (97)
...+++.|.+++..+..++.+++.+|||+|||......+ +. . ..+++|++|+..++.+..+.+.+++.
T Consensus 42 ~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpa--l~-~-------~g~~lVisP~~~L~~q~~~~l~~~gi 109 (591)
T 2v1x_A 42 LEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPA--LC-S-------DGFTLVICPLISLMEDQLMVLKQLGI 109 (591)
T ss_dssp CCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHH--HT-S-------SSEEEEECSCHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHH--HH-c-------CCcEEEEeCHHHHHHHHHHHHHhcCC
Confidence 446889999999999999999999999999997533222 22 2 45899999999999999999998753
No 71
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=98.84 E-value=1.7e-08 Score=73.51 Aligned_cols=69 Identities=20% Similarity=0.205 Sum_probs=52.1
Q ss_pred CCCCHHHHHHHHHHh----cCCceEEeCCCCCchHHHHHHH-HHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhh
Q psy16285 18 LGLNTIQFEAYKAAL----TREFAIIQGPPGTGKTYVALRI-VEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKY 92 (97)
Q Consensus 18 ~~l~~~Q~~~i~~~~----~~~~~~v~Gp~GtGKT~~~~~~-~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~ 92 (97)
+..++.|.+.+..+. +++.+++.+|||||||...... +..+... +.+++|++||+....|+.+.+..+
T Consensus 2 ~~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~-------~~kvli~t~T~~l~~Qi~~el~~l 74 (620)
T 4a15_A 2 YENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER-------KLKVLYLVRTNSQEEQVIKELRSL 74 (620)
T ss_dssp ---CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH-------TCEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc-------CCeEEEECCCHHHHHHHHHHHHHH
Confidence 356889998887543 5789999999999999754433 3333332 678999999999999999998876
Q ss_pred c
Q psy16285 93 T 93 (97)
Q Consensus 93 ~ 93 (97)
.
T Consensus 75 ~ 75 (620)
T 4a15_A 75 S 75 (620)
T ss_dssp H
T ss_pred h
Confidence 5
No 72
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=98.83 E-value=2.3e-08 Score=79.50 Aligned_cols=72 Identities=17% Similarity=0.166 Sum_probs=57.8
Q ss_pred CCCCCHHHHHHHHHHhc-CCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhhc
Q psy16285 17 ELGLNTIQFEAYKAALT-REFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKYT 93 (97)
Q Consensus 17 ~~~l~~~Q~~~i~~~~~-~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~~ 93 (97)
...+++.|.+++..+.. +.+++|.+|||+|||.++...+...+.+. ++.++++++|+++++.+..+++.+.+
T Consensus 924 f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~-----~~~kavyi~P~raLa~q~~~~~~~~f 996 (1724)
T 4f92_B 924 FPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQS-----SEGRCVYITPMEALAEQVYMDWYEKF 996 (1724)
T ss_dssp CSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHC-----TTCCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhC-----CCCEEEEEcChHHHHHHHHHHHHHHh
Confidence 34589999999999875 56899999999999998765554444332 46789999999999999999987643
No 73
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=98.83 E-value=3.6e-09 Score=80.79 Aligned_cols=73 Identities=15% Similarity=0.115 Sum_probs=58.5
Q ss_pred CCCCCHHHHHHHHHHhc--------------CCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHH
Q psy16285 17 ELGLNTIQFEAYKAALT--------------REFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHAL 82 (97)
Q Consensus 17 ~~~l~~~Q~~~i~~~~~--------------~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~ 82 (97)
...+++.|..++..+.. +...+++.++|||||.++..++..+.... ...++||++|+++++
T Consensus 269 ~~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~~ll~~~~-----~~~rvLvlvpr~eL~ 343 (1038)
T 2w00_A 269 LLVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAARLATELD-----FIDKVFFVVDRKDLD 343 (1038)
T ss_dssp EEECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHHHHHTTCT-----TCCEEEEEECGGGCC
T ss_pred cccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHHHHHHhcC-----CCceEEEEeCcHHHH
Confidence 35689999999998764 24689999999999999877664433221 246899999999999
Q ss_pred HHHHHHHHhhcc
Q psy16285 83 DQFVEGVLKYTQ 94 (97)
Q Consensus 83 ~~~~~~l~~~~~ 94 (97)
.|+.+.+.++..
T Consensus 344 ~Q~~~~f~~f~~ 355 (1038)
T 2w00_A 344 YQTMKEYQRFSP 355 (1038)
T ss_dssp HHHHHHHHTTST
T ss_pred HHHHHHHHHhcc
Confidence 999999988764
No 74
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=98.80 E-value=2.8e-08 Score=73.99 Aligned_cols=73 Identities=16% Similarity=0.247 Sum_probs=60.6
Q ss_pred CCCCCHHHHHHHHHHh----cCCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhh
Q psy16285 17 ELGLNTIQFEAYKAAL----TREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKY 92 (97)
Q Consensus 17 ~~~l~~~Q~~~i~~~~----~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~ 92 (97)
...|+++|.+++..+. .+.+.+|.-++|.|||..+..++..+..... ...++||+|| ...+.||.+.+.++
T Consensus 234 ~~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~----~~~~~LIV~P-~sll~qW~~E~~~~ 308 (800)
T 3mwy_W 234 GGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARR----QNGPHIIVVP-LSTMPAWLDTFEKW 308 (800)
T ss_dssp SSCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHS----CCSCEEEECC-TTTHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcC----CCCCEEEEEC-chHHHHHHHHHHHH
Confidence 5689999999998665 5678999999999999998888887765432 3678999999 56799999999998
Q ss_pred cc
Q psy16285 93 TQ 94 (97)
Q Consensus 93 ~~ 94 (97)
..
T Consensus 309 ~p 310 (800)
T 3mwy_W 309 AP 310 (800)
T ss_dssp ST
T ss_pred CC
Confidence 74
No 75
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=98.80 E-value=8.7e-09 Score=73.55 Aligned_cols=67 Identities=16% Similarity=0.138 Sum_probs=54.8
Q ss_pred CCCCHHHHHHHHHHhcCCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhhcc
Q psy16285 18 LGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKYTQ 94 (97)
Q Consensus 18 ~~l~~~Q~~~i~~~~~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~~~ 94 (97)
..+++.|.+++..+.+++.+++.+|||+|||..... -.+. . ...+++++|+..++.++.+++.+++.
T Consensus 24 ~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~l--p~l~-~-------~g~~lvi~P~~aL~~q~~~~l~~~gi 90 (523)
T 1oyw_A 24 QQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQI--PALL-L-------NGLTVVVSPLISLMKDQVDQLQANGV 90 (523)
T ss_dssp SSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHH--HHHH-S-------SSEEEEECSCHHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHH--HHHH-h-------CCCEEEECChHHHHHHHHHHHHHcCC
Confidence 467889999999999999999999999999965432 2222 2 45799999999999999999988753
No 76
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=98.74 E-value=4.7e-08 Score=70.03 Aligned_cols=67 Identities=22% Similarity=0.260 Sum_probs=49.1
Q ss_pred CCCCCHHHHHHHHHHh----cCCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhh
Q psy16285 17 ELGLNTIQFEAYKAAL----TREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKY 92 (97)
Q Consensus 17 ~~~l~~~Q~~~i~~~~----~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~ 92 (97)
.+.+++.|.+++..+. .++.+++.+|||||||......+ + .. ..++++++||+.+.+|+.+.+.++
T Consensus 5 ~~~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~--~-~~-------~~~~~~~~~t~~l~~q~~~~~~~l 74 (540)
T 2vl7_A 5 KLQLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLG--M-QL-------KKKVLIFTRTHSQLDSIYKNAKLL 74 (540)
T ss_dssp ----CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHH--H-HH-------TCEEEEEESCHHHHHHHHHHHGGG
T ss_pred CCCCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHH--H-hC-------CCcEEEEcCCHHHHHHHHHHHHhc
Confidence 3577889999876543 56799999999999996433222 2 22 578999999999999999998875
Q ss_pred c
Q psy16285 93 T 93 (97)
Q Consensus 93 ~ 93 (97)
.
T Consensus 75 ~ 75 (540)
T 2vl7_A 75 G 75 (540)
T ss_dssp T
T ss_pred C
Confidence 3
No 77
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=98.72 E-value=4.8e-08 Score=70.06 Aligned_cols=66 Identities=18% Similarity=0.240 Sum_probs=51.9
Q ss_pred CCCCHHHHHHHHHHh----cCCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhhc
Q psy16285 18 LGLNTIQFEAYKAAL----TREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKYT 93 (97)
Q Consensus 18 ~~l~~~Q~~~i~~~~----~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~~ 93 (97)
+.+++.|.+.+..+. .++.+++.+|||||||......+.. . ..++++++||++...|+.+.+..+.
T Consensus 2 ~~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~---~-------~~~v~i~~pt~~l~~q~~~~~~~l~ 71 (551)
T 3crv_A 2 VKLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE---V-------KPKVLFVVRTHNEFYPIYRDLTKIR 71 (551)
T ss_dssp CSCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH---H-------CSEEEEEESSGGGHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh---C-------CCeEEEEcCCHHHHHHHHHHHHHHh
Confidence 567899999777544 4678999999999998654332222 2 6789999999999999999888764
No 78
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=98.72 E-value=8.2e-08 Score=70.02 Aligned_cols=76 Identities=18% Similarity=0.151 Sum_probs=59.7
Q ss_pred CCCCHHHHHHHHHHh---------cCCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHH
Q psy16285 18 LGLNTIQFEAYKAAL---------TREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEG 88 (97)
Q Consensus 18 ~~l~~~Q~~~i~~~~---------~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~ 88 (97)
..|+++|.+++..+. .+...++.-++|+|||..+..++..+........+...++||+||+ .++.||.+.
T Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E 132 (644)
T 1z3i_X 54 KVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNE 132 (644)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHH
Confidence 468999999999874 2346788889999999999999888877632211124579999997 789999999
Q ss_pred HHhhcc
Q psy16285 89 VLKYTQ 94 (97)
Q Consensus 89 l~~~~~ 94 (97)
+.++..
T Consensus 133 ~~~~~~ 138 (644)
T 1z3i_X 133 VGKWLG 138 (644)
T ss_dssp HHHHHG
T ss_pred HHHHcC
Confidence 999854
No 79
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=98.69 E-value=2.4e-08 Score=69.74 Aligned_cols=50 Identities=24% Similarity=0.329 Sum_probs=41.6
Q ss_pred CCceEEeCCCCCchHHHH-HHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHH
Q psy16285 34 REFAIIQGPPGTGKTYVA-LRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVL 90 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~-~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~ 90 (97)
++++++.||+|+|||..+ ..++..+... +.++++++|+..++.|+.+.+.
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~~~~~-------g~~~lvl~Pt~~La~Q~~~~~~ 52 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVREAVKK-------RLRTVILAPTRVVASEMYEALR 52 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHHHHHT-------TCCEEEEESSHHHHHHHHHHTT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHhC-------CCCEEEECcHHHHHHHHHHHhC
Confidence 578999999999999985 5555555544 6799999999999999988775
No 80
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.69 E-value=1.2e-07 Score=63.75 Aligned_cols=36 Identities=17% Similarity=0.271 Sum_probs=30.6
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHHH-hchhhhhcCCCCEEEEe
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGFL-KNKELARYMSGPILIVC 76 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~~-~~~~~~~~~~~~ilv~~ 76 (97)
..++++.||||||||+++.+++..+. .. +.+++++.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~-------g~~v~~~~ 188 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKK-------GVSTTLLH 188 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHS-------CCCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhc-------CCcEEEEE
Confidence 46899999999999999999999988 55 66777665
No 81
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.69 E-value=1.6e-07 Score=58.79 Aligned_cols=35 Identities=31% Similarity=0.405 Sum_probs=28.8
Q ss_pred CceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEe
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVC 76 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~ 76 (97)
..+++.||||||||+++..++..+... +.+++++.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~-------~~~~~~~~ 89 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR-------NVSSLIVY 89 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT-------TCCEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc-------CCeEEEEE
Confidence 679999999999999999999888655 55666554
No 82
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=98.69 E-value=1.2e-08 Score=71.69 Aligned_cols=54 Identities=17% Similarity=0.260 Sum_probs=44.3
Q ss_pred hcCCceEEeCCCCCchHHH-HHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhh
Q psy16285 32 LTREFAIIQGPPGTGKTYV-ALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKY 92 (97)
Q Consensus 32 ~~~~~~~v~Gp~GtGKT~~-~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~ 92 (97)
.+++++++.+|||||||.. +..++..+... +.+++|++|+++++.|+.+++..+
T Consensus 19 ~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~-------~~~~lvl~Ptr~La~Q~~~~l~g~ 73 (459)
T 2z83_A 19 RKRQMTVLDLHPGSGKTRKILPQIIKDAIQQ-------RLRTAVLAPTRVVAAEMAEALRGL 73 (459)
T ss_dssp STTCEEEECCCTTSCTTTTHHHHHHHHHHHT-------TCCEEEEECSHHHHHHHHHHTTTS
T ss_pred hcCCcEEEECCCCCCHHHHHHHHHHHHHHhC-------CCcEEEECchHHHHHHHHHHhcCc
Confidence 3567899999999999997 56666666544 689999999999999999988643
No 83
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=98.67 E-value=2.1e-08 Score=70.20 Aligned_cols=55 Identities=18% Similarity=0.175 Sum_probs=44.2
Q ss_pred hcCCceEEeCCCCCchHHHH-HHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhhc
Q psy16285 32 LTREFAIIQGPPGTGKTYVA-LRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKYT 93 (97)
Q Consensus 32 ~~~~~~~v~Gp~GtGKT~~~-~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~~ 93 (97)
.+++++++.||+|||||..+ ..++..+... +.++++++|+++++.|+.+.+..+.
T Consensus 6 ~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~-------~~~~lil~Ptr~La~Q~~~~l~~~~ 61 (440)
T 1yks_A 6 KKGMTTVLDFHPGAGKTRRFLPQILAECARR-------RLRTLVLAPTRVVLSEMKEAFHGLD 61 (440)
T ss_dssp STTCEEEECCCTTSSTTTTHHHHHHHHHHHT-------TCCEEEEESSHHHHHHHHHHTTTSC
T ss_pred hCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc-------CCeEEEEcchHHHHHHHHHHHhcCC
Confidence 35789999999999999975 4455545443 6799999999999999999887543
No 84
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=98.65 E-value=1.2e-07 Score=75.45 Aligned_cols=78 Identities=27% Similarity=0.269 Sum_probs=58.8
Q ss_pred CCCCCHHHHHHHHHHhc-CCceEEeCCCCCchHHHHHHHH-HHHHhchhh---hhcCCCCEEEEeCChHHHHHHHHHHHh
Q psy16285 17 ELGLNTIQFEAYKAALT-REFAIIQGPPGTGKTYVALRIV-EGFLKNKEL---ARYMSGPILIVCYTNHALDQFVEGVLK 91 (97)
Q Consensus 17 ~~~l~~~Q~~~i~~~~~-~~~~~v~Gp~GtGKT~~~~~~~-~~~~~~~~~---~~~~~~~ilv~~~~~~~~~~~~~~l~~ 91 (97)
...+++.|.+++..+.. +++++|.+|||+|||.++...+ ..+.+.... ....+.++++++|+++++.+..+.+.+
T Consensus 77 ~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~~ 156 (1724)
T 4f92_B 77 FKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGK 156 (1724)
T ss_dssp CSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHHH
Confidence 44689999999998875 6799999999999999865544 444332110 011356899999999999999999877
Q ss_pred hcc
Q psy16285 92 YTQ 94 (97)
Q Consensus 92 ~~~ 94 (97)
.+.
T Consensus 157 ~~~ 159 (1724)
T 4f92_B 157 RLA 159 (1724)
T ss_dssp HHT
T ss_pred HHh
Confidence 553
No 85
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=98.62 E-value=1.8e-08 Score=74.07 Aligned_cols=61 Identities=18% Similarity=0.266 Sum_probs=47.0
Q ss_pred HHHHHHh------cCCceEEeCCCCCchHHHH-HHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhhc
Q psy16285 26 EAYKAAL------TREFAIIQGPPGTGKTYVA-LRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKYT 93 (97)
Q Consensus 26 ~~i~~~~------~~~~~~v~Gp~GtGKT~~~-~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~~ 93 (97)
+++..+. +++++++.||+|+|||..+ ..++..+... +.++++++|+++++.|+.+.+..+.
T Consensus 227 ~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~-------~~~~lilaPTr~La~Q~~~~l~~~~ 294 (673)
T 2wv9_A 227 EPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQK-------RLRTAVLAPTRVVAAEMAEALRGLP 294 (673)
T ss_dssp ---CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHT-------TCCEEEEESSHHHHHHHHHHTTTSC
T ss_pred cchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhC-------CCcEEEEccHHHHHHHHHHHHhcCC
Confidence 6666555 6789999999999999974 5555555443 6799999999999999999887653
No 86
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.61 E-value=1.6e-07 Score=69.90 Aligned_cols=67 Identities=13% Similarity=0.040 Sum_probs=46.9
Q ss_pred HHHHHHHHHh-cCCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhhc
Q psy16285 23 IQFEAYKAAL-TREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKYT 93 (97)
Q Consensus 23 ~Q~~~i~~~~-~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~~ 93 (97)
.|++++..+. .++.++|.||+|+|||+++..++....... ..+.++++++|++.++.++.+++.+..
T Consensus 97 ~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~----~~g~~ilvl~P~r~La~q~~~~l~~~~ 164 (773)
T 2xau_A 97 AQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPH----LENTQVACTQPRRVAAMSVAQRVAEEM 164 (773)
T ss_dssp GGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGG----GGTCEEEEEESCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhcccc----CCCceEEecCchHHHHHHHHHHHHHHh
Confidence 4555555555 567899999999999996555433221111 025579999999999999998886654
No 87
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.57 E-value=6.8e-07 Score=56.66 Aligned_cols=40 Identities=18% Similarity=0.113 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhc---CCceEEeCCCCCchHHHHHHHHHHHHhc
Q psy16285 22 TIQFEAYKAALT---REFAIIQGPPGTGKTYVALRIVEGFLKN 61 (97)
Q Consensus 22 ~~Q~~~i~~~~~---~~~~~v~Gp~GtGKT~~~~~~~~~~~~~ 61 (97)
....+.+..+.. +..++|.||||||||+++..++..+...
T Consensus 37 ~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~ 79 (242)
T 3bos_A 37 DELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL 79 (242)
T ss_dssp HHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 445555555443 4689999999999999999998887654
No 88
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=98.53 E-value=3.7e-08 Score=69.04 Aligned_cols=59 Identities=22% Similarity=0.214 Sum_probs=45.5
Q ss_pred HHHHHhcC-CceEEeCCCCCchHHH-HHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhh
Q psy16285 27 AYKAALTR-EFAIIQGPPGTGKTYV-ALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKY 92 (97)
Q Consensus 27 ~i~~~~~~-~~~~v~Gp~GtGKT~~-~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~ 92 (97)
++..+.++ ..+++.+|||+|||.. +..++..+... +.++++++|+++++.|+.+.+..+
T Consensus 11 ~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~-------~~~~lvl~Ptr~La~Q~~~~l~g~ 71 (451)
T 2jlq_A 11 VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLR-------RLRTLILAPTRVVAAEMEEALRGL 71 (451)
T ss_dssp CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHT-------TCCEEEEESSHHHHHHHHHHTTTS
T ss_pred HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhc-------CCcEEEECCCHHHHHHHHHHhcCc
Confidence 45555555 4559999999999994 66666666554 689999999999999999887543
No 89
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=98.53 E-value=7.3e-08 Score=70.20 Aligned_cols=58 Identities=24% Similarity=0.208 Sum_probs=47.8
Q ss_pred HHHHHhcCCceEEeCCCCCchHHH-HHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHh
Q psy16285 27 AYKAALTREFAIIQGPPGTGKTYV-ALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLK 91 (97)
Q Consensus 27 ~i~~~~~~~~~~v~Gp~GtGKT~~-~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~ 91 (97)
++..+.+++.+++.+|||||||.. +..++..+... +.++++++|+++++.|+.+.+..
T Consensus 179 ~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~-------~~~vLvl~PtreLa~Qi~~~l~~ 237 (618)
T 2whx_A 179 DEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKR-------RLRTLILAPTRVVAAEMEEALRG 237 (618)
T ss_dssp CGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT-------TCCEEEEESSHHHHHHHHHHTTT
T ss_pred CHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhC-------CCeEEEEcChHHHHHHHHHHhcC
Confidence 466666789999999999999996 46666666554 67999999999999999988753
No 90
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.52 E-value=1.8e-07 Score=56.74 Aligned_cols=41 Identities=20% Similarity=0.214 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHHhcCCceEEeCCCCCchHHHHHHHHHHHHhc
Q psy16285 20 LNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKN 61 (97)
Q Consensus 20 l~~~Q~~~i~~~~~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~ 61 (97)
.+.....++..+ .++.+++.||+|+|||+++..++..+...
T Consensus 23 ~n~~~~~~l~~~-~g~~~~l~G~~G~GKTtL~~~i~~~~~~~ 63 (149)
T 2kjq_A 23 ENAELVYVLRHK-HGQFIYVWGEEGAGKSHLLQAWVAQALEA 63 (149)
T ss_dssp CTHHHHHHCCCC-CCSEEEEESSSTTTTCHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHhc-CCCEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 455555555554 67789999999999999999998887653
No 91
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.51 E-value=2.4e-07 Score=59.25 Aligned_cols=53 Identities=25% Similarity=0.359 Sum_probs=39.6
Q ss_pred cCCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhhc
Q psy16285 33 TREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKYT 93 (97)
Q Consensus 33 ~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~~ 93 (97)
.+..++|.||||+|||+++..++..+... +.++++++... ...++.+++.+++
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~-------~~~v~~~~~e~-~~~~~~~~~~~~g 74 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKM-------GEPGIYVALEE-HPVQVRQNMAQFG 74 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHT-------TCCEEEEESSS-CHHHHHHHHHTTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhc-------CCeEEEEEccC-CHHHHHHHHHHcC
Confidence 35688999999999999999998887665 66788877433 3466666665443
No 92
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=98.50 E-value=7.4e-07 Score=65.38 Aligned_cols=68 Identities=21% Similarity=0.264 Sum_probs=55.1
Q ss_pred CCCCCHHHHHHHHHHhc----CC-ceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHh
Q psy16285 17 ELGLNTIQFEAYKAALT----RE-FAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLK 91 (97)
Q Consensus 17 ~~~l~~~Q~~~i~~~~~----~~-~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~ 91 (97)
.+.++..|.+++..+.. +. ..++.|.+|+|||+++..++... ++++||++|+...+.++.+.++.
T Consensus 6 ~~~~~~~q~~ai~~l~~~~~~~~~~~~l~g~tgs~kt~~~a~~~~~~----------~~~~lvv~~~~~~A~ql~~el~~ 75 (664)
T 1c4o_A 6 GPSPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVIEAL----------GRPALVLAPNKILAAQLAAEFRE 75 (664)
T ss_dssp SCCCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHH----------TCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCCCCChHHHHHHHHHHhcCCCcEEEEcCCCcHHHHHHHHHHHHh----------CCCEEEEecCHHHHHHHHHHHHH
Confidence 45777888888876543 22 46799999999999988776554 45799999999999999999999
Q ss_pred hcc
Q psy16285 92 YTQ 94 (97)
Q Consensus 92 ~~~ 94 (97)
|+.
T Consensus 76 ~~~ 78 (664)
T 1c4o_A 76 LFP 78 (664)
T ss_dssp HCT
T ss_pred HCC
Confidence 974
No 93
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.48 E-value=1.8e-07 Score=63.32 Aligned_cols=43 Identities=7% Similarity=0.105 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHHHhc-------CCceEEeCCCCCchHHHHHHHHHHHHhc
Q psy16285 19 GLNTIQFEAYKAALT-------REFAIIQGPPGTGKTYVALRIVEGFLKN 61 (97)
Q Consensus 19 ~l~~~Q~~~i~~~~~-------~~~~~v~Gp~GtGKT~~~~~~~~~~~~~ 61 (97)
.-++.|.+.+...+. +++++|.||||||||+++..++..+...
T Consensus 23 ~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~ 72 (318)
T 3te6_A 23 KSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITS 72 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 345666666654432 4589999999999999999999998764
No 94
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.48 E-value=1.2e-06 Score=58.53 Aligned_cols=35 Identities=23% Similarity=0.167 Sum_probs=28.8
Q ss_pred CceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEe
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVC 76 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~ 76 (97)
..++|.||||||||+++..++..+... +.+++.+.
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~-------~~~~~~i~ 72 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKR-------GYRVIYSS 72 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHT-------TCCEEEEE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHC-------CCEEEEEE
Confidence 479999999999999999999888665 45666665
No 95
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=98.42 E-value=5.4e-07 Score=69.57 Aligned_cols=59 Identities=19% Similarity=0.234 Sum_probs=45.2
Q ss_pred CceEEeCCCCCchHHHHHHHHHHHHhchh-----hhhcCCCCEEEEeCChHHHHHHHHHHHhhc
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGFLKNKE-----LARYMSGPILIVCYTNHALDQFVEGVLKYT 93 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~-----~~~~~~~~ilv~~~~~~~~~~~~~~l~~~~ 93 (97)
+..+|.+++|||||+++...+..++.... .......+||++++|+.|+.+|.+|+++..
T Consensus 17 g~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L 80 (1180)
T 1w36_B 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNI 80 (1180)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHH
Confidence 45699999999999987777777664210 000136789999999999999999998753
No 96
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.42 E-value=2e-06 Score=53.55 Aligned_cols=45 Identities=27% Similarity=0.440 Sum_probs=33.6
Q ss_pred CCCCCHHHHHHHHHHhcC---CceEEeCCCCCchHHHHHHHHHHHHhc
Q psy16285 17 ELGLNTIQFEAYKAALTR---EFAIIQGPPGTGKTYVALRIVEGFLKN 61 (97)
Q Consensus 17 ~~~l~~~Q~~~i~~~~~~---~~~~v~Gp~GtGKT~~~~~~~~~~~~~ 61 (97)
.+.-++...+.+..+... +.++|.||||+|||+++..++..+...
T Consensus 18 ~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~ 65 (226)
T 2chg_A 18 EVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGE 65 (226)
T ss_dssp GCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGG
T ss_pred HHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 344456666677666543 369999999999999999998887544
No 97
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=98.41 E-value=4.9e-07 Score=57.83 Aligned_cols=53 Identities=17% Similarity=0.236 Sum_probs=39.3
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhhc
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKYT 93 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~~ 93 (97)
+..++|.|+||+|||+++..++.....+ .+.++++++.. ...+++.+++.+++
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~------~~~~v~~~s~E-~~~~~~~~~~~~~~ 82 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEE------YGEPGVFVTLE-ERARDLRREMASFG 82 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHH------HCCCEEEEESS-SCHHHHHHHHHTTT
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHh------cCCCceeeccc-CCHHHHHHHHHHcC
Confidence 4688999999999999999988765544 26778887743 34667777766554
No 98
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.41 E-value=2.2e-07 Score=55.80 Aligned_cols=28 Identities=25% Similarity=0.154 Sum_probs=23.1
Q ss_pred cCCceEEeCCCCCchHHHHHHHHHHHHh
Q psy16285 33 TREFAIIQGPPGTGKTYVALRIVEGFLK 60 (97)
Q Consensus 33 ~~~~~~v~Gp~GtGKT~~~~~~~~~~~~ 60 (97)
.+.++++.||||||||+++..+......
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~~~ 50 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFGRN 50 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSSTT
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhCCc
Confidence 3568999999999999999988765533
No 99
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.39 E-value=1.1e-06 Score=55.50 Aligned_cols=51 Identities=25% Similarity=0.445 Sum_probs=36.3
Q ss_pred cCCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHh
Q psy16285 33 TREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLK 91 (97)
Q Consensus 33 ~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~ 91 (97)
.+..++|.||+|+|||+++..++..+... +.+++++.... ...++..++..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~-------~~~v~~~~~~~-~~~~~~~~~~~ 72 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRD-------GDPCIYVTTEE-SRDSIIRQAKQ 72 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHH-------TCCEEEEESSS-CHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHC-------CCeEEEEEccc-CHHHHHHHHHH
Confidence 35688999999999999999998777655 56777776433 23444444443
No 100
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=98.39 E-value=2.6e-06 Score=62.43 Aligned_cols=73 Identities=15% Similarity=0.247 Sum_probs=58.6
Q ss_pred cccccCCCCCHHHHHHHHHHhc----CC-ceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHH
Q psy16285 12 ANVQEELGLNTIQFEAYKAALT----RE-FAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFV 86 (97)
Q Consensus 12 ~~~~~~~~l~~~Q~~~i~~~~~----~~-~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~ 86 (97)
+.....+.++.+|..++..+.. +. ...+.|.+|+|||+++..++... .+++||++|+...+.++.
T Consensus 5 ~~~~~~~~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~a~~~~~~----------~~~~lvv~~~~~~A~~l~ 74 (661)
T 2d7d_A 5 FELVSKYQPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNLIKEV----------NKPTLVIAHNKTLAGQLY 74 (661)
T ss_dssp CCCCCSCCCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHH----------CCCEEEECSSHHHHHHHH
T ss_pred ceeecCCCCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHHHHHHHHh----------CCCEEEEECCHHHHHHHH
Confidence 4445667888889888886543 22 46789999999999987776554 457999999999999999
Q ss_pred HHHHhhcc
Q psy16285 87 EGVLKYTQ 94 (97)
Q Consensus 87 ~~l~~~~~ 94 (97)
+.++.|+.
T Consensus 75 ~el~~~~~ 82 (661)
T 2d7d_A 75 SEFKEFFP 82 (661)
T ss_dssp HHHHHHCT
T ss_pred HHHHHHcC
Confidence 99999964
No 101
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.38 E-value=1.2e-06 Score=53.41 Aligned_cols=43 Identities=16% Similarity=0.278 Sum_probs=32.5
Q ss_pred CCCCHHHHHHHHHHhc---CCceEEeCCCCCchHHHHHHHHHHHHh
Q psy16285 18 LGLNTIQFEAYKAALT---REFAIIQGPPGTGKTYVALRIVEGFLK 60 (97)
Q Consensus 18 ~~l~~~Q~~~i~~~~~---~~~~~v~Gp~GtGKT~~~~~~~~~~~~ 60 (97)
+.-++.+.+.+..... ...++|.||||||||+++..++..+..
T Consensus 24 ~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 24 VIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp CCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3445666666655543 357899999999999999999988865
No 102
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=98.36 E-value=4.3e-07 Score=63.98 Aligned_cols=46 Identities=24% Similarity=0.257 Sum_probs=38.1
Q ss_pred CceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhh
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKY 92 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~ 92 (97)
+..+|.|+||||||+++...+. ..++++++||++++++|.+++.+.
T Consensus 162 ~v~~I~G~aGsGKTt~I~~~~~------------~~~~lVlTpT~~aa~~l~~kl~~~ 207 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEILSRVN------------FEEDLILVPGRQAAEMIRRRANAS 207 (446)
T ss_dssp EEEEEEECTTSCHHHHHHHHCC------------TTTCEEEESCHHHHHHHHHHHTTT
T ss_pred cEEEEEcCCCCCHHHHHHHHhc------------cCCeEEEeCCHHHHHHHHHHhhhc
Confidence 3668999999999999766542 246899999999999999999643
No 103
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=98.36 E-value=7.7e-08 Score=70.66 Aligned_cols=62 Identities=16% Similarity=0.110 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhcCCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhhc
Q psy16285 22 TIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKYT 93 (97)
Q Consensus 22 ~~Q~~~i~~~~~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~~ 93 (97)
..|.+++..+.+++.+++.||+|+|||+.+.. .+++. +.++++++|+++++.|+.+++.+..
T Consensus 220 ~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l---~ll~~-------g~~vLVl~PTReLA~Qia~~l~~~~ 281 (666)
T 3o8b_A 220 TDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPA---AYAAQ-------GYKVLVLNPSVAATLGFGAYMSKAH 281 (666)
T ss_dssp CCCCSCCCCCSSCEEEEEECCTTSCTTTHHHH---HHHHT-------TCCEEEEESCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCeEEEEeCCchhHHHHHHH---HHHHC-------CCeEEEEcchHHHHHHHHHHHHHHh
Confidence 33444444434567899999999999965443 23333 6699999999999999999887654
No 104
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.36 E-value=1.4e-06 Score=58.84 Aligned_cols=46 Identities=24% Similarity=0.283 Sum_probs=35.8
Q ss_pred cCCCCCHHHHHHHHHHh-------cCCceEEeCCCCCchHHHHHHHHHHHHhc
Q psy16285 16 EELGLNTIQFEAYKAAL-------TREFAIIQGPPGTGKTYVALRIVEGFLKN 61 (97)
Q Consensus 16 ~~~~l~~~Q~~~i~~~~-------~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~ 61 (97)
..+.-++.+.+.+..+. ....++|.||||||||+++..++..+...
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~ 71 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEAR 71 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 45556777877777655 23579999999999999999998887554
No 105
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.35 E-value=8.6e-07 Score=62.32 Aligned_cols=24 Identities=42% Similarity=0.589 Sum_probs=21.9
Q ss_pred CceEEeCCCCCchHHHHHHHHHHH
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
..+++.||||||||.++.+++..+
T Consensus 216 rGvLLyGPPGTGKTllAkAiA~e~ 239 (434)
T 4b4t_M 216 KGALMYGPPGTGKTLLARACAAQT 239 (434)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CeeEEECcCCCCHHHHHHHHHHHh
Confidence 468999999999999999998877
No 106
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.35 E-value=9e-07 Score=61.71 Aligned_cols=24 Identities=42% Similarity=0.636 Sum_probs=22.0
Q ss_pred CceEEeCCCCCchHHHHHHHHHHH
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
..+++.||||||||.++.+++..+
T Consensus 183 rGvLL~GPPGTGKTllAkAiA~e~ 206 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLARAVAHHT 206 (405)
T ss_dssp CCEEEESCSSSSHHHHHHHHHHHH
T ss_pred CceEEeCCCCCCHHHHHHHHHHhh
Confidence 468999999999999999999887
No 107
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.34 E-value=1e-06 Score=61.88 Aligned_cols=24 Identities=33% Similarity=0.607 Sum_probs=21.7
Q ss_pred CceEEeCCCCCchHHHHHHHHHHH
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
+-+++.||||||||.++.+++..+
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999999887
No 108
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=98.32 E-value=5.5e-06 Score=62.24 Aligned_cols=68 Identities=16% Similarity=0.003 Sum_probs=53.2
Q ss_pred CCCCCHHHHHHHHHHhcCCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhhc
Q psy16285 17 ELGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKYT 93 (97)
Q Consensus 17 ~~~l~~~Q~~~i~~~~~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~~ 93 (97)
.+.+.+.|..++..+..+. +...+||+|||..+..-+. +..- .+..++|++||+.++.|..+.+..+.
T Consensus 81 G~~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~-l~aL------~g~~vlVltptreLA~qd~e~~~~l~ 148 (844)
T 1tf5_A 81 GMFPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVY-LNAL------TGKGVHVVTVNEYLASRDAEQMGKIF 148 (844)
T ss_dssp SCCCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHH-HHHT------TSSCEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHH-HHHH------cCCCEEEEeCCHHHHHHHHHHHHHHH
Confidence 4578899999999888777 8999999999975443332 1111 36789999999999999988887765
No 109
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.32 E-value=1.9e-06 Score=55.61 Aligned_cols=24 Identities=38% Similarity=0.613 Sum_probs=21.3
Q ss_pred CceEEeCCCCCchHHHHHHHHHHH
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
..+++.||||||||+++..++..+
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998865
No 110
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=98.31 E-value=4e-06 Score=62.98 Aligned_cols=69 Identities=14% Similarity=-0.028 Sum_probs=52.9
Q ss_pred CCCCCHHHHHHHHHHhcCCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhhcc
Q psy16285 17 ELGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKYTQ 94 (97)
Q Consensus 17 ~~~l~~~Q~~~i~~~~~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~~~ 94 (97)
++...+.|..++..+..+. +...++|+|||..+..-+... .. .+.+++|++||+.++.|..+.+..+..
T Consensus 72 g~~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~-~l------~g~~vlVltPTreLA~Q~~e~~~~l~~ 140 (853)
T 2fsf_A 72 GMRHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLN-AL------TGKGVHVVTVNDYLAQRDAENNRPLFE 140 (853)
T ss_dssp SCCCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHH-HT------TSSCCEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHH-HH------cCCcEEEEcCCHHHHHHHHHHHHHHHH
Confidence 3577899999999887776 899999999997644333211 11 266899999999999999888877653
No 111
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.31 E-value=2.7e-06 Score=59.79 Aligned_cols=24 Identities=38% Similarity=0.549 Sum_probs=21.9
Q ss_pred CceEEeCCCCCchHHHHHHHHHHH
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
.-+++.||||||||.++.+++..+
T Consensus 217 rGvLLyGPPGTGKTlLAkAiA~e~ 240 (437)
T 4b4t_I 217 KGVILYGAPGTGKTLLAKAVANQT 240 (437)
T ss_dssp SEEEEESSTTTTHHHHHHHHHHHH
T ss_pred CCCceECCCCchHHHHHHHHHHHh
Confidence 468999999999999999999887
No 112
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.31 E-value=1.3e-06 Score=53.16 Aligned_cols=43 Identities=19% Similarity=0.268 Sum_probs=31.8
Q ss_pred CCCCHHHHHHHHHHhc---CCceEEeCCCCCchHHHHHHHHHHHHh
Q psy16285 18 LGLNTIQFEAYKAALT---REFAIIQGPPGTGKTYVALRIVEGFLK 60 (97)
Q Consensus 18 ~~l~~~Q~~~i~~~~~---~~~~~v~Gp~GtGKT~~~~~~~~~~~~ 60 (97)
+.-++.+.+.+..... ...++|.||||||||+++..++..+..
T Consensus 24 ~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 24 VIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp CCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred hhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3345555555555443 357899999999999999999988765
No 113
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=98.28 E-value=1.8e-06 Score=63.55 Aligned_cols=52 Identities=17% Similarity=0.243 Sum_probs=39.6
Q ss_pred hcCCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhhcc
Q psy16285 32 LTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKYTQ 94 (97)
Q Consensus 32 ~~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~~~ 94 (97)
.+++.+++.||||+|||+.+ +..+... .+.++++|+++++.|+.+++.+.+.
T Consensus 153 l~rk~vlv~apTGSGKT~~a---l~~l~~~--------~~gl~l~PtR~LA~Qi~~~l~~~g~ 204 (677)
T 3rc3_A 153 MQRKIIFHSGPTNSGKTYHA---IQKYFSA--------KSGVYCGPLKLLAHEIFEKSNAAGV 204 (677)
T ss_dssp SCCEEEEEECCTTSSHHHHH---HHHHHHS--------SSEEEEESSHHHHHHHHHHHHHTTC
T ss_pred cCCCEEEEEcCCCCCHHHHH---HHHHHhc--------CCeEEEeCHHHHHHHHHHHHHhcCC
Confidence 34678999999999999843 2333332 3458899999999999999988653
No 114
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.28 E-value=4.6e-06 Score=58.47 Aligned_cols=37 Identities=22% Similarity=0.211 Sum_probs=29.3
Q ss_pred CceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEe
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVC 76 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~ 76 (97)
..+++.||||+|||+++..++..+.... ++.+++++.
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~~-----~~~~v~~v~ 167 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNE-----PDLRVMYIT 167 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHHC-----CSSCEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhC-----CCCeEEEee
Confidence 4789999999999999999998886652 255666665
No 115
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.26 E-value=1.1e-06 Score=61.79 Aligned_cols=24 Identities=38% Similarity=0.664 Sum_probs=22.0
Q ss_pred CceEEeCCCCCchHHHHHHHHHHH
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
.-+++.||||||||.++.+++..+
T Consensus 216 rGvLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 468999999999999999999887
No 116
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.25 E-value=1.5e-06 Score=57.43 Aligned_cols=26 Identities=38% Similarity=0.525 Sum_probs=23.4
Q ss_pred ceEEeCCCCCchHHHHHHHHHHHHhc
Q psy16285 36 FAIIQGPPGTGKTYVALRIVEGFLKN 61 (97)
Q Consensus 36 ~~~v~Gp~GtGKT~~~~~~~~~~~~~ 61 (97)
++++.||||||||+++..++..+...
T Consensus 69 ~vll~G~~GtGKT~la~~la~~l~~~ 94 (309)
T 3syl_A 69 HMSFTGNPGTGKTTVALKMAGLLHRL 94 (309)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 68999999999999999999888664
No 117
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.25 E-value=2.5e-06 Score=53.61 Aligned_cols=44 Identities=20% Similarity=0.252 Sum_probs=32.9
Q ss_pred CCCCCHHHHHHHHHHhc-C---CceEEeCCCCCchHHHHHHHHHHHHh
Q psy16285 17 ELGLNTIQFEAYKAALT-R---EFAIIQGPPGTGKTYVALRIVEGFLK 60 (97)
Q Consensus 17 ~~~l~~~Q~~~i~~~~~-~---~~~~v~Gp~GtGKT~~~~~~~~~~~~ 60 (97)
.+.-++...+.+..+.. + ..++|.||||+|||+++..++..+..
T Consensus 24 ~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 24 DVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp GCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred HHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 34556667677766553 2 26899999999999999999887743
No 118
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.24 E-value=2.5e-06 Score=55.88 Aligned_cols=24 Identities=38% Similarity=0.610 Sum_probs=21.2
Q ss_pred CceEEeCCCCCchHHHHHHHHHHH
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
..+++.||||||||+++..++..+
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 578999999999999999987665
No 119
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=98.24 E-value=1.6e-06 Score=54.25 Aligned_cols=38 Identities=24% Similarity=0.289 Sum_probs=30.7
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCC
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYT 78 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~ 78 (97)
+...++.||+|+||||++..++..+... +.+++++.|.
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~-------g~~v~~~~~~ 40 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLG-------KKKVAVFKPK 40 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT-------TCEEEEEEEC
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHC-------CCeEEEEeec
Confidence 4567899999999999998888877655 5677777665
No 120
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.23 E-value=2.5e-06 Score=57.62 Aligned_cols=24 Identities=38% Similarity=0.708 Sum_probs=22.0
Q ss_pred CceEEeCCCCCchHHHHHHHHHHH
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
..+++.||||+||||++..++..+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 578999999999999999998877
No 121
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=98.23 E-value=2.6e-06 Score=57.23 Aligned_cols=50 Identities=20% Similarity=0.343 Sum_probs=38.0
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHh
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLK 91 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~ 91 (97)
+..++|.|+||+|||+++..++..+..+ +.++++++.. ....++..++..
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~-------g~~vl~~slE-~s~~~l~~R~~~ 117 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDN-------DDVVNLHSLE-MGKKENIKRLIV 117 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTT-------TCEEEEEESS-SCHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHc-------CCeEEEEECC-CCHHHHHHHHHH
Confidence 5688999999999999999998887665 4678888853 445555555543
No 122
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.22 E-value=8.6e-06 Score=55.12 Aligned_cols=46 Identities=22% Similarity=0.270 Sum_probs=34.3
Q ss_pred cCCCCCHHHHHHHHHHhc-------CCceEEeCCCCCchHHHHHHHHHHHHhc
Q psy16285 16 EELGLNTIQFEAYKAALT-------REFAIIQGPPGTGKTYVALRIVEGFLKN 61 (97)
Q Consensus 16 ~~~~l~~~Q~~~i~~~~~-------~~~~~v~Gp~GtGKT~~~~~~~~~~~~~ 61 (97)
..+.-++.+.+.+..... ...++|.||||||||+++..++..+...
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~ 72 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEV 72 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 455557777766654432 3479999999999999999998887554
No 123
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.22 E-value=6.7e-06 Score=55.60 Aligned_cols=45 Identities=27% Similarity=0.330 Sum_probs=33.2
Q ss_pred cCCCCCHHHHHHHHHHhcC-------C--ceEEeCCCCCchHHHHHHHHHHHHh
Q psy16285 16 EELGLNTIQFEAYKAALTR-------E--FAIIQGPPGTGKTYVALRIVEGFLK 60 (97)
Q Consensus 16 ~~~~l~~~Q~~~i~~~~~~-------~--~~~v~Gp~GtGKT~~~~~~~~~~~~ 60 (97)
..+.-++.+.+.+..+... . .++|.||||||||+++..++..+..
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~ 70 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKD 70 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4455577776666655431 4 6999999999999999988877643
No 124
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.21 E-value=2e-06 Score=55.93 Aligned_cols=26 Identities=31% Similarity=0.296 Sum_probs=22.5
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHHH
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGFL 59 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~~ 59 (97)
...++|.||||||||+++..+...+.
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 56899999999999999988877653
No 125
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.21 E-value=9.2e-07 Score=57.54 Aligned_cols=24 Identities=38% Similarity=0.614 Sum_probs=21.4
Q ss_pred CceEEeCCCCCchHHHHHHHHHHH
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
..+++.||||||||+++.+++..+
T Consensus 45 ~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHHh
Confidence 468999999999999999998875
No 126
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.20 E-value=2.4e-06 Score=60.50 Aligned_cols=24 Identities=38% Similarity=0.595 Sum_probs=21.9
Q ss_pred CceEEeCCCCCchHHHHHHHHHHH
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
+.+++.||||||||.++.+++..+
T Consensus 244 rGILLyGPPGTGKTlLAkAiA~e~ 267 (467)
T 4b4t_H 244 KGILLYGPPGTGKTLCARAVANRT 267 (467)
T ss_dssp SEEEECSCTTSSHHHHHHHHHHHH
T ss_pred CceEeeCCCCCcHHHHHHHHHhcc
Confidence 468999999999999999999877
No 127
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=98.20 E-value=2.1e-06 Score=58.38 Aligned_cols=25 Identities=28% Similarity=0.527 Sum_probs=22.0
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHH
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
...+++.||||||||+++..++..+
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999998765
No 128
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=98.20 E-value=8.8e-07 Score=58.95 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=20.6
Q ss_pred ceEEeCCCCCchHHHHHHHHHHH
Q psy16285 36 FAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 36 ~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
.+++.||||||||+++.+++..+
T Consensus 38 ~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 38 ILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 56788999999999999998877
No 129
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.20 E-value=3.6e-06 Score=54.98 Aligned_cols=24 Identities=38% Similarity=0.618 Sum_probs=21.3
Q ss_pred CceEEeCCCCCchHHHHHHHHHHH
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
..+++.||||||||+++..++..+
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHh
Confidence 478999999999999999998874
No 130
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=98.20 E-value=9.7e-06 Score=61.28 Aligned_cols=68 Identities=13% Similarity=0.012 Sum_probs=52.0
Q ss_pred CCCCCHHHHHHHHHHhcCCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhhc
Q psy16285 17 ELGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKYT 93 (97)
Q Consensus 17 ~~~l~~~Q~~~i~~~~~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~~ 93 (97)
++...+.|..++..+..+. +...+||+|||.++..-+. +..- .+..++|++||..++.+..+.+..+.
T Consensus 109 G~rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~-l~aL------~g~~v~VvTpTreLA~Qdae~m~~l~ 176 (922)
T 1nkt_A 109 DQRPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAY-LNAL------AGNGVHIVTVNDYLAKRDSEWMGRVH 176 (922)
T ss_dssp SCCCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHH-HHHT------TTSCEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHH-HHHH------hCCCeEEEeCCHHHHHHHHHHHHHHH
Confidence 4578899999999877766 8999999999976443332 1111 25689999999999998888877765
No 131
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.20 E-value=2.5e-06 Score=56.21 Aligned_cols=25 Identities=32% Similarity=0.551 Sum_probs=21.8
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHH
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
...+++.||||||||+++..++..+
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHh
Confidence 3578999999999999999987765
No 132
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.19 E-value=2.8e-06 Score=60.54 Aligned_cols=43 Identities=28% Similarity=0.366 Sum_probs=32.5
Q ss_pred cCCCCCHHHHHHHHHHhcC--------------------CceEEeCCCCCchHHHHHHHHHHH
Q psy16285 16 EELGLNTIQFEAYKAALTR--------------------EFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 16 ~~~~l~~~Q~~~i~~~~~~--------------------~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
..+.-++.+.+.+..+... ..+++.||||||||+++..++..+
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3445566677776666532 578999999999999999988766
No 133
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.19 E-value=3.3e-06 Score=56.64 Aligned_cols=24 Identities=38% Similarity=0.689 Sum_probs=21.2
Q ss_pred CceEEeCCCCCchHHHHHHHHHHH
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
..+++.||||||||+++.+++..+
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Confidence 468999999999999999998765
No 134
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.19 E-value=4.2e-06 Score=55.57 Aligned_cols=42 Identities=29% Similarity=0.322 Sum_probs=29.6
Q ss_pred CCCCCHHHHHHHHHHhc--------CCceEEeCCCCCchHHHHHHHHHHH
Q psy16285 17 ELGLNTIQFEAYKAALT--------REFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 17 ~~~l~~~Q~~~i~~~~~--------~~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
.+.-.+...+.+..+.. ...++|.||||||||+++..+...+
T Consensus 13 ~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 13 EYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred HhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh
Confidence 34445555555444332 2579999999999999999998766
No 135
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=98.18 E-value=9.4e-06 Score=61.58 Aligned_cols=70 Identities=16% Similarity=0.024 Sum_probs=54.5
Q ss_pred cCCCCCHHHHHHHHHHhcCCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhhcc
Q psy16285 16 EELGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKYTQ 94 (97)
Q Consensus 16 ~~~~l~~~Q~~~i~~~~~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~~~ 94 (97)
..+...+.|..++..+.++. +....||+|||.++...+. +..- .+..++|++||..++.|..+.+..+..
T Consensus 76 lG~~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~-L~aL------~G~qv~VvTPTreLA~Qdae~m~~l~~ 145 (997)
T 2ipc_A 76 LGMRHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVA-LNAL------TGKGVHVVTVNDYLARRDAEWMGPVYR 145 (997)
T ss_dssp TCCCCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHH-HHHT------TCSCCEEEESSHHHHHHHHHHHHHHHH
T ss_pred hCCCCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHH-HHHH------hCCCEEEEeCCHHHHHHHHHHHHHHHH
Confidence 35577899999999888777 8899999999976443332 1111 267899999999999999998887753
No 136
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.18 E-value=8.5e-06 Score=53.90 Aligned_cols=43 Identities=23% Similarity=0.352 Sum_probs=32.0
Q ss_pred CCCCHHHHHHHHHHhc-C--CceEEeCCCCCchHHHHHHHHHHHHh
Q psy16285 18 LGLNTIQFEAYKAALT-R--EFAIIQGPPGTGKTYVALRIVEGFLK 60 (97)
Q Consensus 18 ~~l~~~Q~~~i~~~~~-~--~~~~v~Gp~GtGKT~~~~~~~~~~~~ 60 (97)
+.-.+...+.+..+.. + +.+++.||||+|||+++..++..+..
T Consensus 27 ~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~ 72 (327)
T 1iqp_A 27 IVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFG 72 (327)
T ss_dssp CCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHG
T ss_pred hhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcC
Confidence 3345666666666553 2 36999999999999999999888754
No 137
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.17 E-value=1.1e-06 Score=56.39 Aligned_cols=24 Identities=25% Similarity=0.530 Sum_probs=21.6
Q ss_pred ceEEeCCCCCchHHHHHHHHHHHH
Q psy16285 36 FAIIQGPPGTGKTYVALRIVEGFL 59 (97)
Q Consensus 36 ~~~v~Gp~GtGKT~~~~~~~~~~~ 59 (97)
.+++.||||||||+++.+++..+.
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999988773
No 138
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.17 E-value=4.3e-06 Score=58.48 Aligned_cols=45 Identities=16% Similarity=0.431 Sum_probs=34.6
Q ss_pred cCCCCCHHHHHHHHHHhc--CCceEEeCCCCCchHHHHHHHHHHHHh
Q psy16285 16 EELGLNTIQFEAYKAALT--REFAIIQGPPGTGKTYVALRIVEGFLK 60 (97)
Q Consensus 16 ~~~~l~~~Q~~~i~~~~~--~~~~~v~Gp~GtGKT~~~~~~~~~~~~ 60 (97)
..+.+...+...+..+.. ++.++|.||+|+||||++..++..+..
T Consensus 147 ~~Lg~~~~~~~~L~~l~~~~ggii~I~GpnGSGKTTlL~allg~l~~ 193 (418)
T 1p9r_A 147 HSLGMTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQELNS 193 (418)
T ss_dssp GGSCCCHHHHHHHHHHHTSSSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred HHcCCCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHhhcCC
Confidence 445567777777776653 457899999999999999988887643
No 139
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.17 E-value=5.1e-06 Score=55.68 Aligned_cols=42 Identities=19% Similarity=0.184 Sum_probs=29.7
Q ss_pred CCCCCHHHHHHHHHHhc-----C---CceEEeCCCCCchHHHHHHHHHHH
Q psy16285 17 ELGLNTIQFEAYKAALT-----R---EFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 17 ~~~l~~~Q~~~i~~~~~-----~---~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
.+.-.+...+.+..+.. + ..++|.||||||||+++..++..+
T Consensus 30 ~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 30 GYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp GCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT
T ss_pred HhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 34445555555555442 1 479999999999999999986654
No 140
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.17 E-value=4.4e-06 Score=53.43 Aligned_cols=28 Identities=25% Similarity=0.255 Sum_probs=23.5
Q ss_pred hcCCceEEeCCCCCchHHHHHHHHHHHH
Q psy16285 32 LTREFAIIQGPPGTGKTYVALRIVEGFL 59 (97)
Q Consensus 32 ~~~~~~~v~Gp~GtGKT~~~~~~~~~~~ 59 (97)
..+..+.|.||+|+||||++..++....
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~~~~~ 55 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGA 55 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3567899999999999999998886554
No 141
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=98.16 E-value=2.8e-06 Score=54.85 Aligned_cols=38 Identities=21% Similarity=0.136 Sum_probs=31.2
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCC
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYT 78 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~ 78 (97)
+...++.||+|+||||.+..++..+... +.+++++.|.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~-------g~kVli~~~~ 49 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYA-------DVKYLVFKPK 49 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHT-------TCCEEEEEEC
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhc-------CCEEEEEEec
Confidence 4577889999999999999998888766 6778887653
No 142
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.16 E-value=6.4e-06 Score=54.47 Aligned_cols=39 Identities=13% Similarity=0.152 Sum_probs=31.3
Q ss_pred cCCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeC
Q psy16285 33 TREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCY 77 (97)
Q Consensus 33 ~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~ 77 (97)
.+..++|.||||+|||+++..++..+... .+.+++++..
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~------~G~~v~~~~~ 72 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTA------MGKKVGLAML 72 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHT------SCCCEEEEES
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHH------cCCeEEEEeC
Confidence 46789999999999999999988877655 2557877764
No 143
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=98.16 E-value=1.5e-06 Score=58.29 Aligned_cols=37 Identities=16% Similarity=0.236 Sum_probs=27.3
Q ss_pred HHHHHHHHH-HhcCCceEEeCCCCCchHHHHHHHHHHH
Q psy16285 22 TIQFEAYKA-ALTREFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 22 ~~Q~~~i~~-~~~~~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
+...+.+.. +..+..+++.||||||||+++..++..+
T Consensus 33 ~~~~~~l~~~l~~~~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 33 KYMINRLLIGICTGGHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp HHHHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 333344333 3357799999999999999999988755
No 144
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.15 E-value=2.7e-06 Score=55.97 Aligned_cols=25 Identities=32% Similarity=0.477 Sum_probs=22.3
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHH
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
...+++.||||||||+++..++..+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998876
No 145
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.14 E-value=4.1e-06 Score=56.41 Aligned_cols=46 Identities=28% Similarity=0.291 Sum_probs=35.9
Q ss_pred cCCCCCHHHHHHHHHHhc-------CCceEEeCCCCCchHHHHHHHHHHHHhc
Q psy16285 16 EELGLNTIQFEAYKAALT-------REFAIIQGPPGTGKTYVALRIVEGFLKN 61 (97)
Q Consensus 16 ~~~~l~~~Q~~~i~~~~~-------~~~~~v~Gp~GtGKT~~~~~~~~~~~~~ 61 (97)
..+.-++.+.+.+..+.. +..++|.||+|+|||+++..++..+...
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 455667778777776554 3579999999999999999988877543
No 146
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.14 E-value=7.6e-06 Score=54.58 Aligned_cols=43 Identities=28% Similarity=0.405 Sum_probs=31.0
Q ss_pred cCCCCCHHHHHHHHHHhcC----CceEEeCCCCCchHHHHHHHHHHH
Q psy16285 16 EELGLNTIQFEAYKAALTR----EFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 16 ~~~~l~~~Q~~~i~~~~~~----~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
..+...+...+.+..+... ..+++.||||||||+++..++..+
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l 72 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV 72 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 4455566777777776643 245667779999999999987765
No 147
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.14 E-value=5.3e-06 Score=53.73 Aligned_cols=24 Identities=42% Similarity=0.623 Sum_probs=21.3
Q ss_pred CceEEeCCCCCchHHHHHHHHHHH
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
..+++.||||||||+++..++..+
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHHc
Confidence 468999999999999999998765
No 148
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=98.12 E-value=4.3e-06 Score=54.23 Aligned_cols=34 Identities=24% Similarity=0.419 Sum_probs=28.9
Q ss_pred ceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEe
Q psy16285 36 FAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVC 76 (97)
Q Consensus 36 ~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~ 76 (97)
++++.|+||+||||++..++..+... +.++++..
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~-------G~~V~v~d 41 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQ-------GVRVMAGV 41 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHT-------TCCEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHC-------CCCEEEEE
Confidence 57899999999999999999999876 66776554
No 149
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.12 E-value=4.5e-06 Score=56.15 Aligned_cols=56 Identities=21% Similarity=0.287 Sum_probs=37.2
Q ss_pred cccccccCCcccccCCCCCHHHHHHHHHHh-cC---CceEEeCCCCCchHHHHHHHHHHHHh
Q psy16285 3 SILDAYDLSANVQEELGLNTIQFEAYKAAL-TR---EFAIIQGPPGTGKTYVALRIVEGFLK 60 (97)
Q Consensus 3 ~~~~~~~~~~~~~~~~~l~~~Q~~~i~~~~-~~---~~~~v~Gp~GtGKT~~~~~~~~~~~~ 60 (97)
.|.+.|.+. ....+.-++...+.+..+. .. +.+++.||+|+|||+++..++..+..
T Consensus 3 ~w~~kyrP~--~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~ 62 (354)
T 1sxj_E 3 LWVDKYRPK--SLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFG 62 (354)
T ss_dssp -CTTTTCCC--SGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSC
T ss_pred cchhccCCC--CHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcC
Confidence 345555432 1233445666667777665 32 35899999999999999999887644
No 150
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.12 E-value=1.5e-06 Score=52.07 Aligned_cols=24 Identities=17% Similarity=0.134 Sum_probs=20.4
Q ss_pred cCCceEEeCCCCCchHHHHHHHHH
Q psy16285 33 TREFAIIQGPPGTGKTYVALRIVE 56 (97)
Q Consensus 33 ~~~~~~v~Gp~GtGKT~~~~~~~~ 56 (97)
...++++.||||||||+++..+..
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~i~~ 49 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARYFHK 49 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGGGCC
T ss_pred CCCcEEEECCCCccHHHHHHHHHH
Confidence 356899999999999999887754
No 151
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=98.11 E-value=4.6e-06 Score=53.19 Aligned_cols=37 Identities=30% Similarity=0.292 Sum_probs=31.8
Q ss_pred CHHHHHHHHHHhcCCceEEeCCCCCchHHHHHHHHHH
Q psy16285 21 NTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEG 57 (97)
Q Consensus 21 ~~~Q~~~i~~~~~~~~~~v~Gp~GtGKT~~~~~~~~~ 57 (97)
+..|..+++.+..++.+.|.||+|+||||++..++..
T Consensus 9 ~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 9 TLGQKHYVDAIDTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SHHHHHHHHHHHHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CHhHHHHHHhccCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4557778888888899999999999999998888766
No 152
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.11 E-value=7.9e-06 Score=55.04 Aligned_cols=39 Identities=21% Similarity=0.389 Sum_probs=28.7
Q ss_pred CHHHHHHHHHHhc-CC--ceEEeCCCCCchHHHHHHHHHHHH
Q psy16285 21 NTIQFEAYKAALT-RE--FAIIQGPPGTGKTYVALRIVEGFL 59 (97)
Q Consensus 21 ~~~Q~~~i~~~~~-~~--~~~v~Gp~GtGKT~~~~~~~~~~~ 59 (97)
.+...+.+..... ++ .+++.||||||||+++..++..+.
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 3445555555544 33 389999999999999999988874
No 153
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.11 E-value=4.1e-06 Score=55.34 Aligned_cols=27 Identities=26% Similarity=0.439 Sum_probs=23.5
Q ss_pred CceEEeCCCCCchHHHHHHHHHHHHhc
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGFLKN 61 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~~~~ 61 (97)
..+++.||||||||+++..++..+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~ 74 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDT 74 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSC
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCC
Confidence 368999999999999999999887554
No 154
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.10 E-value=1.8e-06 Score=57.52 Aligned_cols=24 Identities=38% Similarity=0.602 Sum_probs=21.0
Q ss_pred CceEEeCCCCCchHHHHHHHHHHH
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
..+++.||||||||+++.+++..+
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHT
T ss_pred ceEEEECCCCcCHHHHHHHHHHHh
Confidence 468999999999999999887654
No 155
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.09 E-value=1.9e-06 Score=58.04 Aligned_cols=24 Identities=38% Similarity=0.679 Sum_probs=21.6
Q ss_pred CceEEeCCCCCchHHHHHHHHHHH
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
..+++.||||||||+++.+++..+
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT
T ss_pred ceEEEECCCCccHHHHHHHHHHHc
Confidence 468999999999999999998876
No 156
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.09 E-value=3.1e-06 Score=53.08 Aligned_cols=26 Identities=19% Similarity=0.226 Sum_probs=22.4
Q ss_pred cCCceEEeCCCCCchHHHHHHHHHHH
Q psy16285 33 TREFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 33 ~~~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
....++|.||||+||||++..++..+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999887654
No 157
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.08 E-value=7.8e-06 Score=53.89 Aligned_cols=43 Identities=26% Similarity=0.425 Sum_probs=32.1
Q ss_pred CCCCHHHHHHHHHHhcC---CceEEeCCCCCchHHHHHHHHHHHHh
Q psy16285 18 LGLNTIQFEAYKAALTR---EFAIIQGPPGTGKTYVALRIVEGFLK 60 (97)
Q Consensus 18 ~~l~~~Q~~~i~~~~~~---~~~~v~Gp~GtGKT~~~~~~~~~~~~ 60 (97)
+.-.+...+.+..+... +.+++.||||||||+++..++..+..
T Consensus 19 ~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~ 64 (319)
T 2chq_A 19 VVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFG 64 (319)
T ss_dssp SCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHT
T ss_pred HhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcC
Confidence 44456666666665532 35899999999999999999888743
No 158
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.08 E-value=1e-05 Score=53.11 Aligned_cols=59 Identities=15% Similarity=0.293 Sum_probs=35.9
Q ss_pred cCCceEEeCCCCCchHHHHHHHHHHHHhchhhhhc---CCCCEEEEeCChHHHHHHHHHHHhh
Q psy16285 33 TREFAIIQGPPGTGKTYVALRIVEGFLKNKELARY---MSGPILIVCYTNHALDQFVEGVLKY 92 (97)
Q Consensus 33 ~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~---~~~~ilv~~~~~~~~~~~~~~l~~~ 92 (97)
.+..++|.||+|+|||+++..++..+.......+. ...++++++.... .+++..++..+
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~-~~~~~~r~~~~ 90 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDP-PTAIHHRLHAL 90 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSC-HHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCC-HHHHHHHHHHH
Confidence 46789999999999999999998865431000000 1356777764332 34444444433
No 159
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.08 E-value=5.1e-06 Score=55.67 Aligned_cols=38 Identities=29% Similarity=0.469 Sum_probs=28.5
Q ss_pred HHHHHHHHHhc-C--CceEEeCCCCCchHHHHHHHHHHHHh
Q psy16285 23 IQFEAYKAALT-R--EFAIIQGPPGTGKTYVALRIVEGFLK 60 (97)
Q Consensus 23 ~Q~~~i~~~~~-~--~~~~v~Gp~GtGKT~~~~~~~~~~~~ 60 (97)
...+.+..+.. + +.+++.||||||||+++..++..+..
T Consensus 44 ~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~ 84 (353)
T 1sxj_D 44 HAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYG 84 (353)
T ss_dssp TTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34445555543 3 46899999999999999999888753
No 160
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.08 E-value=2.4e-06 Score=57.78 Aligned_cols=25 Identities=36% Similarity=0.636 Sum_probs=22.5
Q ss_pred CceEEeCCCCCchHHHHHHHHHHHH
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGFL 59 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~~ 59 (97)
..+++.||||||||+++..++..+.
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3789999999999999999998874
No 161
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=98.07 E-value=3.1e-06 Score=51.24 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.0
Q ss_pred ceEEeCCCCCchHHHHHHHHHHH
Q psy16285 36 FAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 36 ~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
.++|.||||+||||++..+...+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999887664
No 162
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.06 E-value=3.7e-06 Score=57.75 Aligned_cols=37 Identities=24% Similarity=0.242 Sum_probs=29.1
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeC
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCY 77 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~ 77 (97)
+..+.|.||||+|||+++..++..+... +.+++++..
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~-------gg~VlyId~ 97 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKM-------GGVAAFIDA 97 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHT-------TCCEEEEES
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc-------CCeEEEEec
Confidence 3478999999999999999999887654 455655554
No 163
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.06 E-value=3.3e-06 Score=57.61 Aligned_cols=24 Identities=38% Similarity=0.689 Sum_probs=21.4
Q ss_pred CceEEeCCCCCchHHHHHHHHHHH
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
..+++.||||||||+++.+++..+
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHHh
Confidence 368999999999999999998776
No 164
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=98.06 E-value=3.7e-06 Score=51.77 Aligned_cols=25 Identities=24% Similarity=0.192 Sum_probs=21.6
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHH
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
...+++.||||+||||++..++..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999887665
No 165
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=98.05 E-value=2.8e-06 Score=51.98 Aligned_cols=24 Identities=17% Similarity=0.299 Sum_probs=20.9
Q ss_pred CceEEeCCCCCchHHHHHHHHHHH
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
..++|.|+||+||||++..+...+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 468999999999999999887754
No 166
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.05 E-value=1.3e-05 Score=55.09 Aligned_cols=24 Identities=33% Similarity=0.544 Sum_probs=21.1
Q ss_pred CceEEeCCCCCchHHHHHHHHHHH
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
..++|.||||||||+++.+++..+
T Consensus 149 ~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHhh
Confidence 579999999999999999887654
No 167
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.04 E-value=3.4e-06 Score=59.22 Aligned_cols=24 Identities=46% Similarity=0.822 Sum_probs=22.1
Q ss_pred CceEEeCCCCCchHHHHHHHHHHH
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
..+++.||||||||+++.+++..+
T Consensus 64 ~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHHh
Confidence 479999999999999999999886
No 168
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.04 E-value=3.5e-06 Score=51.32 Aligned_cols=25 Identities=20% Similarity=0.513 Sum_probs=20.9
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHH
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
+..+.|.||+|+||||++..+...+
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999988876653
No 169
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=98.04 E-value=5e-05 Score=54.96 Aligned_cols=74 Identities=12% Similarity=0.108 Sum_probs=58.4
Q ss_pred cCCCCCHHHHHHHHHHhcCCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhhcc
Q psy16285 16 EELGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKYTQ 94 (97)
Q Consensus 16 ~~~~l~~~Q~~~i~~~~~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~~~ 94 (97)
..+.+.+.|...+..+...+..++.+|-|+|||+++...+...+... ++.++++++++...+..+++.++.+..
T Consensus 160 ~~~~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~-----~~~~i~~va~t~~qA~~~~~~i~~~i~ 233 (592)
T 3cpe_A 160 IKVQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN-----KDKAVGILAHKGSMSAEVLDRTKQAIE 233 (592)
T ss_dssp BBCCCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTS-----SSCEEEEEESSHHHHHHHHHHHHHHHT
T ss_pred ccCcCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhC-----CCCeEEEEECCHHHHHHHHHHHHHHHH
Confidence 45789999999998765567889999999999998776655444331 356899999999999999888876643
No 170
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.04 E-value=5.9e-06 Score=58.16 Aligned_cols=24 Identities=46% Similarity=0.555 Sum_probs=21.2
Q ss_pred CceEEeCCCCCchHHHHHHHHHHH
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
.++++.||||||||+++..++..+
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Confidence 368999999999999999888765
No 171
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.03 E-value=8e-06 Score=54.62 Aligned_cols=38 Identities=16% Similarity=0.282 Sum_probs=30.5
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeC
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCY 77 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~ 77 (97)
+..+++.||+|+||||++..++..+... .+.+++++..
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~------~G~~V~lv~~ 142 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLE------KHKKIAFITT 142 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHT------TCCCEEEEEC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHh------cCCEEEEEec
Confidence 3478899999999999999999888653 2667777763
No 172
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.03 E-value=7.7e-06 Score=55.88 Aligned_cols=37 Identities=30% Similarity=0.310 Sum_probs=29.8
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeC
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCY 77 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~ 77 (97)
+..++|.||||+|||+++..++..+... +.+++++..
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~-------g~~vlyi~~ 97 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAA-------GGIAAFIDA 97 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT-------TCCEEEEES
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC-------CCeEEEEEC
Confidence 4578999999999999999999887665 556666653
No 173
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=98.02 E-value=1.1e-05 Score=56.39 Aligned_cols=49 Identities=22% Similarity=0.197 Sum_probs=36.9
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHH
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGV 89 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l 89 (97)
+..++|.|+||+|||+++..++..+... .+.++++++.. ....++..++
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~------~g~~vl~~slE-~~~~~l~~R~ 248 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALK------EGVGVGIYSLE-MPAAQLTLRM 248 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHT------TCCCEEEEESS-SCHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHh------CCCeEEEEECC-CCHHHHHHHH
Confidence 4678999999999999999999888764 36788888753 2344555554
No 174
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.02 E-value=9.8e-06 Score=56.88 Aligned_cols=49 Identities=22% Similarity=0.348 Sum_probs=36.7
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHH
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGV 89 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l 89 (97)
+..++|.|+||+|||+++..++..+... .+.++++++... ...++..++
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~------~g~~Vl~~s~E~-s~~~l~~r~ 251 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATK------TNENVAIFSLEM-SAQQLVMRM 251 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHH------SSCCEEEEESSS-CHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHh------CCCcEEEEECCC-CHHHHHHHH
Confidence 5688999999999999999999888764 366888888532 234444443
No 175
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.02 E-value=9.3e-06 Score=55.40 Aligned_cols=49 Identities=18% Similarity=0.298 Sum_probs=37.7
Q ss_pred cCCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHH
Q psy16285 33 TREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGV 89 (97)
Q Consensus 33 ~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l 89 (97)
.+..++|.|+||+|||+++..++..+... +.++++++.. ....++..++
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~~-------g~~Vl~fSlE-ms~~ql~~Rl 93 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALND-------DRGVAVFSLE-MSAEQLALRA 93 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHT-------TCEEEEEESS-SCHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHc-------CCeEEEEeCC-CCHHHHHHHH
Confidence 35689999999999999999999888765 6788888852 3345555554
No 176
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=98.01 E-value=8.1e-06 Score=50.20 Aligned_cols=25 Identities=32% Similarity=0.523 Sum_probs=21.6
Q ss_pred ceEEeCCCCCchHHHHHHHHHHHHh
Q psy16285 36 FAIIQGPPGTGKTYVALRIVEGFLK 60 (97)
Q Consensus 36 ~~~v~Gp~GtGKT~~~~~~~~~~~~ 60 (97)
.++|.|+||+||||++..+...+-.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4789999999999999998887743
No 177
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.01 E-value=2.1e-05 Score=53.89 Aligned_cols=29 Identities=21% Similarity=0.508 Sum_probs=24.7
Q ss_pred cCCceEEeCCCCCchHHHHHHHHHHHHhc
Q psy16285 33 TREFAIIQGPPGTGKTYVALRIVEGFLKN 61 (97)
Q Consensus 33 ~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~ 61 (97)
.++.++|.||+|+||||++..++..+...
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~ 150 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNT 150 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCC
Confidence 45689999999999999999888877554
No 178
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.01 E-value=3.4e-06 Score=54.53 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=20.1
Q ss_pred ceEEeCCCCCchHHHHHHHHHHH
Q psy16285 36 FAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 36 ~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
.+++.||||||||+++..++..+
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999887654
No 179
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=98.00 E-value=9.7e-06 Score=50.09 Aligned_cols=28 Identities=32% Similarity=0.507 Sum_probs=23.6
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHHHhc
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGFLKN 61 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~~~~ 61 (97)
+..+++.|++|+||||++..++..+...
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~ 40 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQKE 40 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 3478899999999999999988887543
No 180
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.00 E-value=3.4e-06 Score=55.72 Aligned_cols=23 Identities=35% Similarity=0.616 Sum_probs=20.2
Q ss_pred ceEEeCCCCCchHHHHHHHHHHH
Q psy16285 36 FAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 36 ~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
.+++.||||||||+++..++..+
T Consensus 46 GvlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCcHHHHHHHHHHHc
Confidence 48999999999999999887754
No 181
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=98.00 E-value=1.1e-05 Score=55.40 Aligned_cols=37 Identities=19% Similarity=0.328 Sum_probs=30.5
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeC
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCY 77 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~ 77 (97)
+..++|.||||+|||+++..++..+... +.+++++..
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~-------g~~vlyid~ 99 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQRE-------GKTCAFIDA 99 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT-------TCCEEEEES
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC-------CCeEEEEeC
Confidence 4578999999999999999999888765 556777664
No 182
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.00 E-value=7.3e-06 Score=52.22 Aligned_cols=27 Identities=19% Similarity=0.117 Sum_probs=22.8
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHHHh
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGFLK 60 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~~~ 60 (97)
+..+.|.||||+|||+++..++.....
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~ 50 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQL 50 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTS
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhC
Confidence 568899999999999999998876433
No 183
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.00 E-value=5.7e-06 Score=51.85 Aligned_cols=26 Identities=23% Similarity=0.446 Sum_probs=22.3
Q ss_pred cCCceEEeCCCCCchHHHHHHHHHHH
Q psy16285 33 TREFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 33 ~~~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
.+..++|.||+|+||||++..+...+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 35689999999999999998887665
No 184
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.99 E-value=5.9e-06 Score=50.82 Aligned_cols=26 Identities=19% Similarity=0.440 Sum_probs=22.3
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHHH
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGFL 59 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~~ 59 (97)
+..++|.|+||+||||++..+...+-
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35789999999999999998888764
No 185
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.99 E-value=7.6e-06 Score=57.51 Aligned_cols=34 Identities=24% Similarity=0.301 Sum_probs=28.7
Q ss_pred ceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEe
Q psy16285 36 FAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVC 76 (97)
Q Consensus 36 ~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~ 76 (97)
.+++.||+|+||||++..++..+... +.++++++
T Consensus 99 vI~lvG~~GsGKTTt~~kLA~~l~~~-------G~kVllv~ 132 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAGKLAYFYKKR-------GYKVGLVA 132 (433)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHHHT-------TCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc-------CCeEEEEe
Confidence 67889999999999999999888655 67777766
No 186
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.99 E-value=6.4e-06 Score=50.60 Aligned_cols=25 Identities=24% Similarity=0.403 Sum_probs=21.6
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHH
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
...+++.|+||+||||++..+...+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999887654
No 187
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=97.99 E-value=6.6e-06 Score=57.85 Aligned_cols=48 Identities=21% Similarity=0.350 Sum_probs=36.0
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHH
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGV 89 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l 89 (97)
+..++|.|+||+|||+++..++..+..+ +.++++++.. ...+++..++
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~-------g~~vl~fSlE-ms~~ql~~R~ 244 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDN-------DDVVNLHSLE-MGKKENIKRL 244 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHT-------TCEEEEECSS-SCTTHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHc-------CCEEEEEECC-CCHHHHHHHH
Confidence 4688999999999999999999888776 5678888753 2233444443
No 188
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.98 E-value=4.5e-06 Score=56.98 Aligned_cols=25 Identities=28% Similarity=0.591 Sum_probs=22.0
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHH
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
...+++.||||||||+++..++..+
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999988766
No 189
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.98 E-value=1.2e-05 Score=54.76 Aligned_cols=45 Identities=27% Similarity=0.190 Sum_probs=32.1
Q ss_pred cCCCCCHHHHHHHHHHh----------cCCceEE--eCCCCCchHHHHHHHHHHHHh
Q psy16285 16 EELGLNTIQFEAYKAAL----------TREFAII--QGPPGTGKTYVALRIVEGFLK 60 (97)
Q Consensus 16 ~~~~l~~~Q~~~i~~~~----------~~~~~~v--~Gp~GtGKT~~~~~~~~~~~~ 60 (97)
..+.-++.+.+.+.... ....++| .||+|+|||+++..++..+..
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~ 78 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSE 78 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHH
Confidence 34444666666666554 1236788 899999999999999887654
No 190
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=97.98 E-value=5e-06 Score=59.37 Aligned_cols=28 Identities=39% Similarity=0.663 Sum_probs=24.1
Q ss_pred HhcCCceEEeCCCCCchHHHHHHHHHHH
Q psy16285 31 ALTREFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 31 ~~~~~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
+..+.++++.||||||||+++.+++..+
T Consensus 38 l~~~~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 38 ALSGESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp HHHTCEEEEECCSSSSHHHHHHHGGGGB
T ss_pred HhcCCeeEeecCchHHHHHHHHHHHHHH
Confidence 3467899999999999999999987755
No 191
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.98 E-value=1.1e-05 Score=54.36 Aligned_cols=35 Identities=20% Similarity=0.377 Sum_probs=28.4
Q ss_pred CceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEe
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVC 76 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~ 76 (97)
..+++.||+|+||||++..++..+... +.++++..
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~~l~~~-------g~kV~lv~ 139 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAKMFVDE-------GKSVVLAA 139 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHT-------TCCEEEEE
T ss_pred eEEEEEcCCCChHHHHHHHHHHHHHhc-------CCEEEEEc
Confidence 367899999999999999998887554 56777665
No 192
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.97 E-value=3.6e-06 Score=52.04 Aligned_cols=25 Identities=24% Similarity=0.488 Sum_probs=21.3
Q ss_pred cCCceEEeCCCCCchHHHHHHHHHH
Q psy16285 33 TREFAIIQGPPGTGKTYVALRIVEG 57 (97)
Q Consensus 33 ~~~~~~v~Gp~GtGKT~~~~~~~~~ 57 (97)
.+..++|.||+|+||||++..++..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4568899999999999998888664
No 193
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.97 E-value=1.9e-05 Score=53.25 Aligned_cols=42 Identities=21% Similarity=0.264 Sum_probs=30.7
Q ss_pred CCCCHHHHHHHHHHhc-C---CceEEeCCCCCchHHHHHHHHHHHH
Q psy16285 18 LGLNTIQFEAYKAALT-R---EFAIIQGPPGTGKTYVALRIVEGFL 59 (97)
Q Consensus 18 ~~l~~~Q~~~i~~~~~-~---~~~~v~Gp~GtGKT~~~~~~~~~~~ 59 (97)
+.-++...+.+..... + ..+++.||+|+|||+++..++..+.
T Consensus 18 ~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp SCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred ccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4445666666666553 2 2478999999999999999988774
No 194
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=97.97 E-value=7.3e-06 Score=54.89 Aligned_cols=26 Identities=19% Similarity=0.183 Sum_probs=22.9
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHHH
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGFL 59 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~~ 59 (97)
...+++.||||||||+++..++..+.
T Consensus 45 ~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp GCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CceEEEECCCCccHHHHHHHHHHhCc
Confidence 45799999999999999999988764
No 195
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.96 E-value=6.8e-06 Score=50.32 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=20.4
Q ss_pred ceEEeCCCCCchHHHHHHHHHHH
Q psy16285 36 FAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 36 ~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
.++|.|+||+||||++..++..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58899999999999999887765
No 196
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.96 E-value=1.3e-05 Score=54.56 Aligned_cols=24 Identities=38% Similarity=0.573 Sum_probs=21.1
Q ss_pred CceEEeCCCCCchHHHHHHHHHHH
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
..+++.||||||||+++.+++..+
T Consensus 118 ~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 118 KGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999987654
No 197
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.96 E-value=7e-06 Score=50.73 Aligned_cols=26 Identities=15% Similarity=0.381 Sum_probs=22.0
Q ss_pred cCCceEEeCCCCCchHHHHHHHHHHH
Q psy16285 33 TREFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 33 ~~~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
.+..++|.||+|+||||++..+....
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45678999999999999988887654
No 198
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.95 E-value=1.3e-05 Score=50.50 Aligned_cols=39 Identities=18% Similarity=0.099 Sum_probs=32.2
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCCh
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTN 79 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~ 79 (97)
+...++.||.|+|||+.+..++..+... +.+++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~-------g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIA-------KQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHT-------TCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHC-------CCEEEEEEecc
Confidence 3467899999999999999998888655 78899988754
No 199
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.95 E-value=1e-05 Score=50.77 Aligned_cols=34 Identities=24% Similarity=0.224 Sum_probs=27.0
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeC
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCY 77 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~ 77 (97)
+..++|.||||+|||+++..++. .. +.+++++..
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~---~~-------~~~v~~i~~ 53 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL---LS-------GKKVAYVDT 53 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH---HH-------CSEEEEEES
T ss_pred CEEEEEECCCCCCHHHHHHHHHH---Hc-------CCcEEEEEC
Confidence 46889999999999999998887 22 556777664
No 200
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.95 E-value=1.9e-05 Score=55.73 Aligned_cols=43 Identities=21% Similarity=0.357 Sum_probs=31.9
Q ss_pred CCCHHHHHHHHHHhc---CCceEEeCCCCCchHHHHHHHHHHHHhc
Q psy16285 19 GLNTIQFEAYKAALT---REFAIIQGPPGTGKTYVALRIVEGFLKN 61 (97)
Q Consensus 19 ~l~~~Q~~~i~~~~~---~~~~~v~Gp~GtGKT~~~~~~~~~~~~~ 61 (97)
.-++...+.+..+.. ..++++.||||||||+++..++..+...
T Consensus 183 iGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~ 228 (468)
T 3pxg_A 183 IGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINN 228 (468)
T ss_dssp CCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSS
T ss_pred cCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhC
Confidence 335555555555542 3588999999999999999999887553
No 201
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.95 E-value=1e-05 Score=56.97 Aligned_cols=34 Identities=26% Similarity=0.473 Sum_probs=28.9
Q ss_pred ceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEe
Q psy16285 36 FAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVC 76 (97)
Q Consensus 36 ~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~ 76 (97)
.+++.|++|+||||++..++.++.+. +.++++++
T Consensus 102 vIlivG~~G~GKTTt~~kLA~~l~~~-------G~kVllv~ 135 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLARYFQKR-------GYKVGVVC 135 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTT-------TCCEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHHHHHHHC-------CCeEEEEe
Confidence 67899999999999999999888665 66777766
No 202
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.95 E-value=6.7e-06 Score=55.97 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=21.0
Q ss_pred CCceEEeCCCCCchHHHHHHHHHH
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEG 57 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~ 57 (97)
+..++|.||||+|||+++..++..
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 456799999999999999999876
No 203
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.94 E-value=7.4e-06 Score=51.04 Aligned_cols=26 Identities=31% Similarity=0.557 Sum_probs=21.9
Q ss_pred cCCceEEeCCCCCchHHHHHHHHHHH
Q psy16285 33 TREFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 33 ~~~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
.+..+.|.||+|+||||++..++..+
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 45688999999999999988887653
No 204
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.94 E-value=2.1e-05 Score=63.64 Aligned_cols=39 Identities=18% Similarity=0.305 Sum_probs=32.6
Q ss_pred cCCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCC
Q psy16285 33 TREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYT 78 (97)
Q Consensus 33 ~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~ 78 (97)
++.++++.||||||||+++.+++...+.+ +.+++|+...
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~-------G~~v~Fi~~e 1464 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQRE-------GKTCAFIDAE 1464 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT-------TCCEEEECTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-------CCcEEEEEcc
Confidence 35689999999999999999999988776 6677777754
No 205
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.94 E-value=2.7e-05 Score=51.36 Aligned_cols=43 Identities=23% Similarity=0.281 Sum_probs=31.8
Q ss_pred CCCCHHHHHHHHHHhcC---CceEEeCCCCCchHHHHHHHHHHHHh
Q psy16285 18 LGLNTIQFEAYKAALTR---EFAIIQGPPGTGKTYVALRIVEGFLK 60 (97)
Q Consensus 18 ~~l~~~Q~~~i~~~~~~---~~~~v~Gp~GtGKT~~~~~~~~~~~~ 60 (97)
+.-++...+.+..+... +.+++.||||+|||+++..++..+..
T Consensus 23 ~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~ 68 (323)
T 1sxj_B 23 IVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLG 68 (323)
T ss_dssp CCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHG
T ss_pred HHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcC
Confidence 33455566666665543 35899999999999999999988754
No 206
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.94 E-value=9.3e-05 Score=51.30 Aligned_cols=73 Identities=12% Similarity=0.102 Sum_probs=57.7
Q ss_pred cCCCCCHHHHHHHHHHhcCCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhhc
Q psy16285 16 EELGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKYT 93 (97)
Q Consensus 16 ~~~~l~~~Q~~~i~~~~~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~~ 93 (97)
..+.+.++|...+..+...+..++..+-+.|||+++..++....... ++.++++++++...+..+++.+..+.
T Consensus 160 ~p~~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~-----~g~~v~~vA~t~~qA~~vf~~i~~mi 232 (385)
T 2o0j_A 160 IKVQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN-----KDKAVGILAHKGSMSAEVLDRTKQAI 232 (385)
T ss_dssp EECCCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSS-----SSCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhC-----CCCeEEEEeCCHHHHHHHHHHHHHHH
Confidence 45789999999998765567789999999999998777765533321 46789999999999888888777654
No 207
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.93 E-value=6.6e-06 Score=51.57 Aligned_cols=27 Identities=19% Similarity=0.271 Sum_probs=23.4
Q ss_pred cCCceEEeCCCCCchHHHHHHHHHHHH
Q psy16285 33 TREFAIIQGPPGTGKTYVALRIVEGFL 59 (97)
Q Consensus 33 ~~~~~~v~Gp~GtGKT~~~~~~~~~~~ 59 (97)
.+..+.|.||+|+||||++..++..+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 356889999999999999999888775
No 208
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.93 E-value=1.5e-05 Score=53.52 Aligned_cols=37 Identities=14% Similarity=0.226 Sum_probs=28.7
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeC
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCY 77 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~ 77 (97)
+..+.+.||+|+||||++..++..+-.. +.+|++...
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~-------~g~V~l~g~ 138 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNL-------GKKVMFCAG 138 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTT-------TCCEEEECC
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhc-------CCEEEEEee
Confidence 4578899999999999988888776543 556766653
No 209
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.93 E-value=6.7e-06 Score=50.11 Aligned_cols=21 Identities=29% Similarity=0.496 Sum_probs=18.8
Q ss_pred ceEEeCCCCCchHHHHHHHHH
Q psy16285 36 FAIIQGPPGTGKTYVALRIVE 56 (97)
Q Consensus 36 ~~~v~Gp~GtGKT~~~~~~~~ 56 (97)
.+++.|+||+||||++..+..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 578999999999999888876
No 210
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.92 E-value=9.7e-06 Score=49.88 Aligned_cols=24 Identities=29% Similarity=0.627 Sum_probs=20.7
Q ss_pred CceEEeCCCCCchHHHHHHHHHHH
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
..++|.|+||+||||++..+...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468899999999999998887654
No 211
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.92 E-value=1.1e-05 Score=54.40 Aligned_cols=44 Identities=20% Similarity=0.214 Sum_probs=30.1
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCC
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYT 78 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~ 78 (97)
+..++|.||||+|||+++..++..+..... ++..+.++++++..
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~-~gg~~~~vlyi~~e 150 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPE-KGGLSGKAVYIDTE 150 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGG-GTCCSCEEEEEESS
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccc-cCCCCCeEEEEECC
Confidence 457899999999999999999877543310 11114567777654
No 212
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.92 E-value=6e-06 Score=54.20 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=20.1
Q ss_pred ceEEeCCCCCchHHHHHHHHHHH
Q psy16285 36 FAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 36 ~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
.++|.||||||||+++..++..+
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCcChHHHHHHHHHHHc
Confidence 47999999999999999887654
No 213
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.92 E-value=1.5e-05 Score=52.80 Aligned_cols=23 Identities=35% Similarity=0.404 Sum_probs=20.5
Q ss_pred ceEEeCCCCCchHHHHHHHHHHH
Q psy16285 36 FAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 36 ~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
.+++.||||||||+++.+++..+
T Consensus 106 ~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 106 TIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhh
Confidence 58999999999999999988753
No 214
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.92 E-value=9.3e-06 Score=49.33 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=21.3
Q ss_pred CceEEeCCCCCchHHHHHHHHHHH
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
.+++|.|++||||||++..+...+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999998887765
No 215
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.92 E-value=7.9e-06 Score=51.50 Aligned_cols=23 Identities=35% Similarity=0.598 Sum_probs=19.5
Q ss_pred ceEEeCCCCCchHHHHHHHHHHH
Q psy16285 36 FAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 36 ~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
.++|.||||+||||++..++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999988886654
No 216
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=97.92 E-value=1.2e-05 Score=57.08 Aligned_cols=50 Identities=8% Similarity=0.100 Sum_probs=37.2
Q ss_pred cCCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHH
Q psy16285 33 TREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGV 89 (97)
Q Consensus 33 ~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l 89 (97)
.+..++|.|+||+|||+++..++..+..+ .+.++++++... ...++..++
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~------~g~~vl~~s~E~-s~~~l~~r~ 290 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTA------MGKKVGLAMLEE-SVEETAEDL 290 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTT------SCCCEEEEESSS-CHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHh------cCCcEEEEeccC-CHHHHHHHH
Confidence 35678999999999999999999888664 266888888532 344555554
No 217
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.91 E-value=5.8e-06 Score=57.95 Aligned_cols=24 Identities=38% Similarity=0.679 Sum_probs=21.6
Q ss_pred CceEEeCCCCCchHHHHHHHHHHH
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
..+++.||||||||+++.+++..+
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998876
No 218
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.91 E-value=9.1e-06 Score=50.55 Aligned_cols=23 Identities=48% Similarity=0.712 Sum_probs=20.1
Q ss_pred ceEEeCCCCCchHHHHHHHHHHH
Q psy16285 36 FAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 36 ~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
.+.|.||+|+||||++..++..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999999988887766
No 219
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.91 E-value=1.6e-05 Score=53.31 Aligned_cols=36 Identities=19% Similarity=0.270 Sum_probs=28.5
Q ss_pred CceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeC
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCY 77 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~ 77 (97)
..+.+.||+|+||||++..++..+... +.+|++...
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~l~~~-------~g~V~l~g~ 136 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHRLKNE-------GTKVLMAAG 136 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHT-------TCCEEEECC
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHc-------CCeEEEEee
Confidence 467899999999999998888777544 567777653
No 220
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.90 E-value=2.7e-05 Score=48.27 Aligned_cols=37 Identities=16% Similarity=0.078 Sum_probs=29.0
Q ss_pred CceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCC
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYT 78 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~ 78 (97)
..+.|.|++|+||||++..++..+... +.++.++.+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~-------g~~v~~ik~~ 41 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVRE-------GWRVGTVKHH 41 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHT-------TCCEEEEECC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhc-------CCeeeEEEeC
Confidence 467899999999999999999887654 5566666643
No 221
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.90 E-value=8.1e-06 Score=49.86 Aligned_cols=25 Identities=24% Similarity=0.478 Sum_probs=21.0
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHH
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
+..++|.||+|+||||++..+...+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 3578999999999999988887654
No 222
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.90 E-value=8.7e-06 Score=53.10 Aligned_cols=23 Identities=35% Similarity=0.590 Sum_probs=20.3
Q ss_pred ceEEeCCCCCchHHHHHHHHHHH
Q psy16285 36 FAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 36 ~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
.++|.|||||||||++..++..+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 46899999999999999998765
No 223
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.90 E-value=6.9e-06 Score=49.53 Aligned_cols=19 Identities=37% Similarity=0.625 Sum_probs=17.2
Q ss_pred ceEEeCCCCCchHHHHHHH
Q psy16285 36 FAIIQGPPGTGKTYVALRI 54 (97)
Q Consensus 36 ~~~v~Gp~GtGKT~~~~~~ 54 (97)
.++|.||||+||||++..+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999998877
No 224
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.90 E-value=8.1e-06 Score=50.35 Aligned_cols=24 Identities=33% Similarity=0.652 Sum_probs=20.5
Q ss_pred CceEEeCCCCCchHHHHHHHHHHH
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
..+++.|+||+||||++..+...+
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999998887654
No 225
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.90 E-value=9.7e-06 Score=49.84 Aligned_cols=24 Identities=38% Similarity=0.667 Sum_probs=20.5
Q ss_pred CceEEeCCCCCchHHHHHHHHHHH
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
..+++.|+||+||||++..+...+
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999988887654
No 226
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.89 E-value=2e-05 Score=51.43 Aligned_cols=27 Identities=30% Similarity=0.492 Sum_probs=22.8
Q ss_pred CceEEeCCCCCchHHHHHHHHHHHHhc
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGFLKN 61 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~~~~ 61 (97)
..+++.|+||+||||++..+...+...
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~ 31 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKN 31 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhC
Confidence 468899999999999999998876543
No 227
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=97.89 E-value=1.8e-05 Score=61.05 Aligned_cols=51 Identities=18% Similarity=0.310 Sum_probs=39.2
Q ss_pred eEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhh
Q psy16285 37 AIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKY 92 (97)
Q Consensus 37 ~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~ 92 (97)
-+|.|+||||||+++...+.+++.+.. .+.++++++|+..+.. +.+++.+.
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~~~----~~~~il~lVP~q~TFt-~~~rl~~~ 54 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRRAP----FGKPIIFLVPDQMTFL-MEYELAKT 54 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHCT----TSSCEEEECCGGGHHH-HHHHHTCC
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCC----CCCcEEEEecCcccHH-HHHHHHHh
Confidence 479999999999999998888887632 3689999988776554 55666543
No 228
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.89 E-value=8e-06 Score=51.31 Aligned_cols=26 Identities=23% Similarity=0.470 Sum_probs=22.4
Q ss_pred cCCceEEeCCCCCchHHHHHHHHHHH
Q psy16285 33 TREFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 33 ~~~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
.+..++|.||||+||||++..+...+
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 35688999999999999998887765
No 229
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.89 E-value=9.5e-06 Score=51.28 Aligned_cols=26 Identities=23% Similarity=0.404 Sum_probs=21.9
Q ss_pred cCCceEEeCCCCCchHHHHHHHHHHH
Q psy16285 33 TREFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 33 ~~~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
.+..++|.||+|+||||++..++..+
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 35678999999999999988887654
No 230
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.89 E-value=1.8e-05 Score=53.73 Aligned_cols=36 Identities=17% Similarity=0.239 Sum_probs=28.5
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEe
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVC 76 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~ 76 (97)
+..+.+.||+|+||||++..++..+... +.+|++..
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~l~~~-------~g~V~l~g 164 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANWLKNH-------GFSVVIAA 164 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHHT-------TCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc-------CCEEEEEe
Confidence 3478999999999999999888776544 56677665
No 231
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.89 E-value=1e-05 Score=50.64 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=20.9
Q ss_pred CceEEeCCCCCchHHHHHHHHHHH
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
..++|.|++|+||||++..+...+
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999998887665
No 232
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.89 E-value=2.1e-05 Score=48.61 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=21.8
Q ss_pred ceEEeCCCCCchHHHHHHHHHHHHhc
Q psy16285 36 FAIIQGPPGTGKTYVALRIVEGFLKN 61 (97)
Q Consensus 36 ~~~v~Gp~GtGKT~~~~~~~~~~~~~ 61 (97)
.++|.|++|+||||++..+...+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~ 27 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKR 27 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 36899999999999999888877443
No 233
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.89 E-value=1e-05 Score=50.04 Aligned_cols=26 Identities=27% Similarity=0.553 Sum_probs=22.0
Q ss_pred cCCceEEeCCCCCchHHHHHHHHHHH
Q psy16285 33 TREFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 33 ~~~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
+...++|.|+||+||||++..+...+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 45678999999999999988887654
No 234
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.89 E-value=9.1e-06 Score=50.73 Aligned_cols=26 Identities=19% Similarity=0.212 Sum_probs=22.1
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHHH
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGFL 59 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~~ 59 (97)
+..++|.|+||+||||++..+...+-
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 34688999999999999999888763
No 235
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.89 E-value=1.2e-05 Score=56.46 Aligned_cols=34 Identities=21% Similarity=0.294 Sum_probs=28.9
Q ss_pred ceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEe
Q psy16285 36 FAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVC 76 (97)
Q Consensus 36 ~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~ 76 (97)
.+++.|++|+||||++..++..+... +.+++++.
T Consensus 101 vI~ivG~~GvGKTTla~~La~~l~~~-------G~kVllv~ 134 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAKLARYIQKR-------GLKPALIA 134 (432)
T ss_dssp CEEEECCSSSSTTHHHHHHHHHHHHH-------HCCEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc-------CCeEEEEe
Confidence 68899999999999999999988765 56777665
No 236
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.89 E-value=1.2e-05 Score=54.57 Aligned_cols=45 Identities=20% Similarity=0.162 Sum_probs=30.0
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCCh
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTN 79 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~ 79 (97)
+..++|.||||+|||+++..++........ .+..+.++++++...
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~~~-~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLPGA-GGYPGGKIIFIDTEN 166 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSCBT-TTBCCCEEEEEESSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcccc-cCCCCCeEEEEECCC
Confidence 347899999999999999998877543210 001245677776543
No 237
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.88 E-value=1.1e-05 Score=50.02 Aligned_cols=24 Identities=42% Similarity=0.498 Sum_probs=21.1
Q ss_pred CCceEEeCCCCCchHHHHHHHHHH
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEG 57 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~ 57 (97)
+..++|+|+|||||||++..+...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 457899999999999999888776
No 238
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.88 E-value=1.6e-05 Score=49.19 Aligned_cols=26 Identities=31% Similarity=0.547 Sum_probs=22.2
Q ss_pred cCCceEEeCCCCCchHHHHHHHHHHH
Q psy16285 33 TREFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 33 ~~~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
....++|.|+||+||||++..+...+
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 45678999999999999998887664
No 239
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.88 E-value=2e-05 Score=54.19 Aligned_cols=37 Identities=32% Similarity=0.366 Sum_probs=29.7
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeC
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCY 77 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~ 77 (97)
+..++|.||||+|||+++..++..+... +.+++++..
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~-------g~~vlyi~~ 110 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKA-------GGTCAFIDA 110 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT-------TCCEEEEES
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHC-------CCeEEEEEC
Confidence 4578999999999999999999888665 456666654
No 240
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.88 E-value=1.9e-05 Score=52.75 Aligned_cols=26 Identities=31% Similarity=0.367 Sum_probs=22.3
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHHH
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGFL 59 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~~ 59 (97)
...++|.||||||||+++..+.....
T Consensus 25 ~~~vLi~Ge~GtGKt~lAr~i~~~~~ 50 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELVARALHACSA 50 (304)
T ss_dssp TSCEEEESCTTSCHHHHHHHHHHHSS
T ss_pred CCcEEEECCCCchHHHHHHHHHHhCc
Confidence 46899999999999999988877653
No 241
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.87 E-value=7.6e-06 Score=51.63 Aligned_cols=22 Identities=41% Similarity=0.566 Sum_probs=18.7
Q ss_pred ceEEeCCCCCchHHHHHHHHHH
Q psy16285 36 FAIIQGPPGTGKTYVALRIVEG 57 (97)
Q Consensus 36 ~~~v~Gp~GtGKT~~~~~~~~~ 57 (97)
+++|.||||+||||++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999998888654
No 242
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.87 E-value=1.7e-05 Score=52.14 Aligned_cols=29 Identities=17% Similarity=0.414 Sum_probs=24.1
Q ss_pred hcCCceEEeCCCCCchHHHHHHHHHHHHh
Q psy16285 32 LTREFAIIQGPPGTGKTYVALRIVEGFLK 60 (97)
Q Consensus 32 ~~~~~~~v~Gp~GtGKT~~~~~~~~~~~~ 60 (97)
..++.+.|.||+|+||||++..++..+..
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~ 51 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQ 51 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCC
Confidence 35678999999999999998888876643
No 243
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.87 E-value=1.2e-05 Score=49.54 Aligned_cols=24 Identities=38% Similarity=0.612 Sum_probs=20.2
Q ss_pred CceEEeCCCCCchHHHHHHHHHHH
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
..++|.|+||+||||++..+...+
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999988886654
No 244
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.87 E-value=3.6e-05 Score=51.19 Aligned_cols=43 Identities=16% Similarity=0.213 Sum_probs=34.9
Q ss_pred ccCCCCCHHHHHHHHHHhcCCceEEeCCCCCchHHHHHHHHHHH
Q psy16285 15 QEELGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 15 ~~~~~l~~~Q~~~i~~~~~~~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
...+.-++.+.+.+.. ...+.++|.||+|+|||+++..++..+
T Consensus 12 ~~~~~gR~~el~~L~~-l~~~~v~i~G~~G~GKT~L~~~~~~~~ 54 (357)
T 2fna_A 12 RKDFFDREKEIEKLKG-LRAPITLVLGLRRTGKSSIIKIGINEL 54 (357)
T ss_dssp GGGSCCCHHHHHHHHH-TCSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHhcChHHHHHHHHH-hcCCcEEEECCCCCCHHHHHHHHHHhc
Confidence 3456667888888887 765789999999999999998887764
No 245
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=97.86 E-value=2.1e-05 Score=57.96 Aligned_cols=61 Identities=16% Similarity=0.216 Sum_probs=49.5
Q ss_pred CCCHHHHHHHHHHhc--CCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHH
Q psy16285 19 GLNTIQFEAYKAALT--REFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGV 89 (97)
Q Consensus 19 ~l~~~Q~~~i~~~~~--~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l 89 (97)
.++..|.+++..... .+..+|+|+.|.|||+++-..+..+. .+++|++|+..++..+.+-.
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~----------~~~~vtAP~~~a~~~l~~~~ 237 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIA----------GRAIVTAPAKASTDVLAQFA 237 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSS----------SCEEEECSSCCSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHH----------hCcEEECCCHHHHHHHHHHh
Confidence 568899999998776 56789999999999988777776652 34799999999998877654
No 246
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.86 E-value=1e-05 Score=50.43 Aligned_cols=26 Identities=35% Similarity=0.526 Sum_probs=22.0
Q ss_pred cCCceEEeCCCCCchHHHHHHHHHHH
Q psy16285 33 TREFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 33 ~~~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
.+..+.|.||+|+||||++..+...+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 45688999999999999988877655
No 247
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.86 E-value=1.2e-05 Score=51.28 Aligned_cols=23 Identities=35% Similarity=0.603 Sum_probs=19.3
Q ss_pred ceEEeCCCCCchHHHHHHHHHHH
Q psy16285 36 FAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 36 ~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
.+++.||||+||+|.+..++..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36889999999999988886554
No 248
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.86 E-value=1.4e-05 Score=48.44 Aligned_cols=24 Identities=25% Similarity=0.374 Sum_probs=20.6
Q ss_pred CceEEeCCCCCchHHHHHHHHHHH
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
..++|.|+||+||||++..+...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368899999999999998887654
No 249
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.85 E-value=1.4e-05 Score=50.22 Aligned_cols=25 Identities=20% Similarity=0.507 Sum_probs=21.1
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHH
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
+..+.|.||+|+||||++..+....
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 5678999999999999988887754
No 250
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.85 E-value=1e-05 Score=51.00 Aligned_cols=26 Identities=23% Similarity=0.577 Sum_probs=22.1
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHHH
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGFL 59 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~~ 59 (97)
+..+.|.||+|+||||++..+...+-
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 35788999999999999888877764
No 251
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.85 E-value=2.3e-05 Score=52.94 Aligned_cols=35 Identities=23% Similarity=0.337 Sum_probs=28.7
Q ss_pred CceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEe
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVC 76 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~ 76 (97)
..+++.||+|+||||++..++..+... +.+++++.
T Consensus 106 ~vI~ivG~~G~GKTT~~~~LA~~l~~~-------g~kVllid 140 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSLAKMANYYAEL-------GYKVLIAA 140 (320)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHT-------TCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHC-------CCeEEEEe
Confidence 467899999999999999998887654 66777765
No 252
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.85 E-value=1.3e-05 Score=49.75 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.3
Q ss_pred ceEEeCCCCCchHHHHHHHHHHH
Q psy16285 36 FAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 36 ~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
.++|.|++|+||||++..+...+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 47899999999999999888765
No 253
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.85 E-value=1.5e-05 Score=50.54 Aligned_cols=25 Identities=36% Similarity=0.571 Sum_probs=21.1
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHH
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
+..+++.|+||+||||++..++..+
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3468999999999999998887654
No 254
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.85 E-value=1.4e-05 Score=49.55 Aligned_cols=24 Identities=29% Similarity=0.620 Sum_probs=20.5
Q ss_pred CceEEeCCCCCchHHHHHHHHHHH
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
+.+.|.||+|+||||++..++..+
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 467899999999999988887655
No 255
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.84 E-value=1.3e-05 Score=50.06 Aligned_cols=24 Identities=33% Similarity=0.660 Sum_probs=20.6
Q ss_pred CceEEeCCCCCchHHHHHHHHHHH
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
..++|.|+||+||||++..+...+
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 368899999999999988887654
No 256
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.84 E-value=1.5e-05 Score=51.40 Aligned_cols=25 Identities=48% Similarity=0.755 Sum_probs=21.2
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHH
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
...++|.||+|+||||++..++..+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999998887443
No 257
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.83 E-value=1.2e-05 Score=51.62 Aligned_cols=24 Identities=29% Similarity=0.601 Sum_probs=20.0
Q ss_pred CceEEeCCCCCchHHHHHHHHHHH
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
+.++|.||||+||+|.+..++..+
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 467889999999999988886554
No 258
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.83 E-value=1.4e-05 Score=50.05 Aligned_cols=27 Identities=22% Similarity=0.341 Sum_probs=22.8
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHHHh
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGFLK 60 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~~~ 60 (97)
+..++|.|++|+||||++..+...+-.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 457899999999999999988877643
No 259
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.83 E-value=3.2e-05 Score=48.38 Aligned_cols=28 Identities=18% Similarity=0.372 Sum_probs=23.5
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHHHhc
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGFLKN 61 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~~~~ 61 (97)
+..++|.|++|+||||++..+...+-..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4578999999999999999988877443
No 260
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.82 E-value=3.4e-05 Score=47.42 Aligned_cols=25 Identities=28% Similarity=0.389 Sum_probs=21.3
Q ss_pred ceEEeCCCCCchHHHHHHHHHHHHh
Q psy16285 36 FAIIQGPPGTGKTYVALRIVEGFLK 60 (97)
Q Consensus 36 ~~~v~Gp~GtGKT~~~~~~~~~~~~ 60 (97)
.++|.|++|+||||++..+...+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQ 26 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4689999999999999988887643
No 261
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.81 E-value=1.4e-05 Score=50.70 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=21.1
Q ss_pred CceEEeCCCCCchHHHHHHHHHHH
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
..++|.||||+||||++..++..+
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999887765
No 262
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.81 E-value=1.7e-05 Score=49.96 Aligned_cols=28 Identities=25% Similarity=0.417 Sum_probs=22.8
Q ss_pred HhcCCceEEeCCCCCchHHHHHHHHHHH
Q psy16285 31 ALTREFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 31 ~~~~~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
+..++.+.|.||+|+||||++..++..+
T Consensus 17 i~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 17 AAVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3567899999999999999988887665
No 263
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.80 E-value=2.8e-05 Score=53.39 Aligned_cols=36 Identities=19% Similarity=0.270 Sum_probs=28.6
Q ss_pred CceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeC
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCY 77 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~ 77 (97)
..+.+.||+|+||||++..++..+... +.+|++...
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag~l~~~-------~G~V~l~g~ 193 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAHRLKNE-------GTKVLMAAG 193 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHT-------TCCEEEECC
T ss_pred eEEEEEcCCCChHHHHHHHHHhhcccc-------CCEEEEecc
Confidence 467899999999999998888877544 567777653
No 264
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.80 E-value=2.3e-05 Score=53.87 Aligned_cols=29 Identities=17% Similarity=0.445 Sum_probs=24.3
Q ss_pred cCCceEEeCCCCCchHHHHHHHHHHHHhc
Q psy16285 33 TREFAIIQGPPGTGKTYVALRIVEGFLKN 61 (97)
Q Consensus 33 ~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~ 61 (97)
.++.++|.||+|+||||++..++..+...
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~ 163 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQT 163 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcC
Confidence 45689999999999999999988876543
No 265
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.80 E-value=1.6e-05 Score=57.17 Aligned_cols=25 Identities=36% Similarity=0.643 Sum_probs=22.4
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHH
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
+..+++.||||||||+++..++..+
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999998877
No 266
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.79 E-value=4.6e-05 Score=56.46 Aligned_cols=43 Identities=19% Similarity=0.342 Sum_probs=32.2
Q ss_pred CCCCHHHHHHHHHHhc---CCceEEeCCCCCchHHHHHHHHHHHHh
Q psy16285 18 LGLNTIQFEAYKAALT---REFAIIQGPPGTGKTYVALRIVEGFLK 60 (97)
Q Consensus 18 ~~l~~~Q~~~i~~~~~---~~~~~v~Gp~GtGKT~~~~~~~~~~~~ 60 (97)
+.-++...+.+..+.. ..++++.||||||||+++..++..+..
T Consensus 182 iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~ 227 (758)
T 3pxi_A 182 VIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIIN 227 (758)
T ss_dssp CCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred ccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhc
Confidence 3345556655555542 358999999999999999999988754
No 267
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.79 E-value=1.5e-05 Score=48.92 Aligned_cols=23 Identities=35% Similarity=0.627 Sum_probs=19.9
Q ss_pred ceEEeCCCCCchHHHHHHHHHHH
Q psy16285 36 FAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 36 ~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
.++|.|+||+||||++..+...+
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 67899999999999988887654
No 268
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.79 E-value=2e-05 Score=49.85 Aligned_cols=24 Identities=29% Similarity=0.556 Sum_probs=20.6
Q ss_pred CceEEeCCCCCchHHHHHHHHHHH
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
..+.|.||+|+||||++..+...+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999988887654
No 269
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.79 E-value=1e-05 Score=49.99 Aligned_cols=22 Identities=36% Similarity=0.690 Sum_probs=19.0
Q ss_pred CceEEeCCCCCchHHHHHHHHH
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVE 56 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~ 56 (97)
..++|.||+|+||||++..++.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 3578999999999999888865
No 270
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.78 E-value=1.8e-05 Score=56.22 Aligned_cols=24 Identities=38% Similarity=0.600 Sum_probs=21.0
Q ss_pred CceEEeCCCCCchHHHHHHHHHHH
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
..+++.||||||||+++.+++..+
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 358999999999999999998765
No 271
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.78 E-value=4.1e-05 Score=46.96 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=22.1
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHHH
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGFL 59 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~~ 59 (97)
+..+++.|++|+||||++..+...+.
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45788999999999999988887763
No 272
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.78 E-value=2e-05 Score=49.94 Aligned_cols=23 Identities=30% Similarity=0.612 Sum_probs=18.9
Q ss_pred ceEEeCCCCCchHHHHHHHHHHH
Q psy16285 36 FAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 36 ~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
..+++|+||||||+.+..++...
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 56899999999999987765554
No 273
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.78 E-value=1.9e-05 Score=50.63 Aligned_cols=24 Identities=38% Similarity=0.697 Sum_probs=21.0
Q ss_pred CceEEeCCCCCchHHHHHHHHHHH
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
.++++.|+||+||||++..++..+
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999887665
No 274
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.78 E-value=1.8e-05 Score=51.18 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=20.5
Q ss_pred CceEEeCCCCCchHHHHHHHHHHH
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
..++|.||||+||||++..+...+
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999998887654
No 275
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.78 E-value=2e-05 Score=47.61 Aligned_cols=23 Identities=17% Similarity=0.143 Sum_probs=19.8
Q ss_pred ceEEeCCCCCchHHHHHHHHHHH
Q psy16285 36 FAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 36 ~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
.++|.|+||+||||++..+...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999988887654
No 276
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.78 E-value=2.2e-05 Score=49.32 Aligned_cols=24 Identities=29% Similarity=0.620 Sum_probs=20.2
Q ss_pred CceEEeCCCCCchHHHHHHHHHHH
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
+.++|.||+|+|||+++..++...
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 468999999999999988776654
No 277
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.77 E-value=6.5e-05 Score=50.25 Aligned_cols=35 Identities=26% Similarity=0.242 Sum_probs=28.7
Q ss_pred ceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeC
Q psy16285 36 FAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCY 77 (97)
Q Consensus 36 ~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~ 77 (97)
.+++.|++|+||||++..++..+... +.+++++..
T Consensus 100 vi~i~G~~G~GKTT~~~~la~~~~~~-------g~~v~l~~~ 134 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAGKLAYFYKKK-------GFKVGLVGA 134 (297)
T ss_dssp EEEEECSSCSSTTHHHHHHHHHHHHT-------TCCEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-------CCeEEEEec
Confidence 56789999999999999998887654 667777664
No 278
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.77 E-value=5.9e-05 Score=53.83 Aligned_cols=52 Identities=23% Similarity=0.414 Sum_probs=36.0
Q ss_pred cCCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhh
Q psy16285 33 TREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKY 92 (97)
Q Consensus 33 ~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~ 92 (97)
.+..++|.||+|+|||+++..++...... +.+++++++... ..++..+..++
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-------G~~vi~~~~ee~-~~~l~~~~~~~ 331 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENACAN-------KERAILFAYEES-RAQLLRNAYSW 331 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHHTT-------TCCEEEEESSSC-HHHHHHHHHTT
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhC-------CCCEEEEEEeCC-HHHHHHHHHHc
Confidence 35688999999999999999888776543 556766665432 34555555443
No 279
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.77 E-value=2e-05 Score=50.25 Aligned_cols=26 Identities=27% Similarity=0.468 Sum_probs=22.5
Q ss_pred cCCceEEeCCCCCchHHHHHHHHHHH
Q psy16285 33 TREFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 33 ~~~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
.+..+.|.||+|+||||++..++...
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 46789999999999999988887754
No 280
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.77 E-value=1.4e-05 Score=53.16 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=19.9
Q ss_pred ceEEeCCCCCchHHHHHHHHHHH
Q psy16285 36 FAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 36 ~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
.++|.||||+||||++..+...+
T Consensus 35 livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999988887654
No 281
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=97.77 E-value=4.6e-05 Score=52.32 Aligned_cols=41 Identities=20% Similarity=0.255 Sum_probs=33.0
Q ss_pred cCCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChH
Q psy16285 33 TREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNH 80 (97)
Q Consensus 33 ~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~ 80 (97)
.+++++|.||+|+|||+++..++..+... +.+++++=|.++
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~-------~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQ-------GSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTT-------TCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHC-------CCEEEEEeCCcC
Confidence 46789999999999999999998887654 567777766543
No 282
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.76 E-value=1.8e-05 Score=50.00 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=19.8
Q ss_pred ceEEeCCCCCchHHHHHHHHHHH
Q psy16285 36 FAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 36 ~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
+++|.|+||+||||++..+...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999998887654
No 283
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.76 E-value=7.6e-05 Score=49.57 Aligned_cols=43 Identities=12% Similarity=0.161 Sum_probs=33.7
Q ss_pred ccCCCCCHHHHHHHHHHhc-CCceEEeCCCCCchHHHHHHHHHH
Q psy16285 15 QEELGLNTIQFEAYKAALT-REFAIIQGPPGTGKTYVALRIVEG 57 (97)
Q Consensus 15 ~~~~~l~~~Q~~~i~~~~~-~~~~~v~Gp~GtGKT~~~~~~~~~ 57 (97)
...+.-++.+.+.+..+.. ++.++|.||+|+|||+++..++..
T Consensus 11 ~~~~~gR~~el~~L~~~l~~~~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 11 REDIFDREEESRKLEESLENYPLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred hHhcCChHHHHHHHHHHHhcCCeEEEECCCcCCHHHHHHHHHHH
Confidence 3456667888888777664 578999999999999998887654
No 284
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.75 E-value=6e-05 Score=47.51 Aligned_cols=38 Identities=11% Similarity=0.163 Sum_probs=27.7
Q ss_pred CHHHHHHHHHHhcCCceEEeCCCCCchHHHHHHHHHHHH
Q psy16285 21 NTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFL 59 (97)
Q Consensus 21 ~~~Q~~~i~~~~~~~~~~v~Gp~GtGKT~~~~~~~~~~~ 59 (97)
...++.... ...+..+++.|++|+||||++..+...+-
T Consensus 13 ~~~~r~~~~-~~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 13 TRSERTELR-NQRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp CHHHHHHHH-TSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CHHHhhccc-CCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 444444422 23456788999999999999998888775
No 285
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.75 E-value=3.4e-05 Score=55.17 Aligned_cols=39 Identities=21% Similarity=0.118 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHHh-cCCceEEeCCCCCchHHHHHHHHHHH
Q psy16285 20 LNTIQFEAYKAAL-TREFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 20 l~~~Q~~~i~~~~-~~~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
++......+.... .+.+++|.||+|+||||++..++..+
T Consensus 245 ~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 245 VPSGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4555556666544 45689999999999999988877655
No 286
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.74 E-value=6.2e-05 Score=47.77 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=33.9
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCC
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYT 78 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~ 78 (97)
.+.++|.+++|.||||.+..++..+... +.+|+|+.+-
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~-------G~rV~~vQF~ 65 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGH-------GKNVGVVQFI 65 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHT-------TCCEEEEESS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHC-------CCeEEEEEee
Confidence 5789999999999999999999999887 8899999653
No 287
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.74 E-value=4.1e-05 Score=48.04 Aligned_cols=27 Identities=22% Similarity=0.235 Sum_probs=22.2
Q ss_pred CceEEeCCCCCchHHHHHHHHHHHHhc
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGFLKN 61 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~~~~ 61 (97)
..+.|.||+|+||||++..+...+...
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~~~~~ 49 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQTLREQ 49 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 468899999999999988887766443
No 288
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.74 E-value=0.00016 Score=54.31 Aligned_cols=41 Identities=20% Similarity=0.314 Sum_probs=30.2
Q ss_pred CCHHHHHHHHHHhc---CCceEEeCCCCCchHHHHHHHHHHHHh
Q psy16285 20 LNTIQFEAYKAALT---REFAIIQGPPGTGKTYVALRIVEGFLK 60 (97)
Q Consensus 20 l~~~Q~~~i~~~~~---~~~~~v~Gp~GtGKT~~~~~~~~~~~~ 60 (97)
-++.....+..+.. ..++++.||||||||+++..++..+..
T Consensus 174 Gr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~ 217 (854)
T 1qvr_A 174 GRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVK 217 (854)
T ss_dssp SCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 34445444444442 347899999999999999999998865
No 289
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.74 E-value=4e-05 Score=51.68 Aligned_cols=26 Identities=23% Similarity=0.324 Sum_probs=23.1
Q ss_pred ceEEeCCCCCchHHHHHHHHHHHHhc
Q psy16285 36 FAIIQGPPGTGKTYVALRIVEGFLKN 61 (97)
Q Consensus 36 ~~~v~Gp~GtGKT~~~~~~~~~~~~~ 61 (97)
.+++.||+|+|||+++..++..+...
T Consensus 26 a~L~~G~~G~GKt~~a~~la~~l~~~ 51 (334)
T 1a5t_A 26 ALLIQALPGMGDDALIYALSRYLLCQ 51 (334)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCS
T ss_pred eEEEECCCCchHHHHHHHHHHHHhCC
Confidence 48999999999999999999988654
No 290
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.74 E-value=2.4e-05 Score=49.93 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=19.9
Q ss_pred ceEEeCCCCCchHHHHHHHHHHH
Q psy16285 36 FAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 36 ~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
.++|.|+||+||||++..+...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999988887665
No 291
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.74 E-value=1.6e-05 Score=49.50 Aligned_cols=25 Identities=24% Similarity=0.442 Sum_probs=21.4
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHH
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
+..++|.|++|+||||++..+...+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4578999999999999988887765
No 292
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.74 E-value=1.3e-05 Score=49.15 Aligned_cols=25 Identities=36% Similarity=0.470 Sum_probs=16.8
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHH
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
...++|.|+||+||||++..+...+
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3468899999999999988886654
No 293
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.74 E-value=1.7e-05 Score=50.49 Aligned_cols=25 Identities=44% Similarity=0.618 Sum_probs=20.9
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHH
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
...++|.|+||+||||++..++..+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3578999999999999988887543
No 294
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.73 E-value=2.6e-05 Score=58.48 Aligned_cols=24 Identities=38% Similarity=0.602 Sum_probs=20.9
Q ss_pred CceEEeCCCCCchHHHHHHHHHHH
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
..+++.||||||||.++.+++..+
T Consensus 512 ~gvLl~GPPGtGKT~lAkaiA~e~ 535 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp SCCEEESSTTSSHHHHHHHHHHTT
T ss_pred ceEEEecCCCCCchHHHHHHHHHh
Confidence 358999999999999999997765
No 295
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.73 E-value=2.6e-05 Score=49.40 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=20.7
Q ss_pred CceEEeCCCCCchHHHHHHHHHHH
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
..++|.|+||+||||++..++..+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999998887655
No 296
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.73 E-value=4.2e-05 Score=54.69 Aligned_cols=35 Identities=17% Similarity=0.338 Sum_probs=28.0
Q ss_pred CceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEe
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVC 76 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~ 76 (97)
..+.|.||+|+||||++..++..+... +.+|++..
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAgll~~~-------~G~V~l~g 328 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLARQFEQQ-------GKSVMLAA 328 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHT-------TCCEEEEC
T ss_pred eEEEEECCCcccHHHHHHHHHHHhhhc-------CCeEEEec
Confidence 468899999999999988888776443 67788763
No 297
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.73 E-value=2.7e-05 Score=49.37 Aligned_cols=26 Identities=15% Similarity=0.356 Sum_probs=22.2
Q ss_pred cCCceEEeCCCCCchHHHHHHHHHHH
Q psy16285 33 TREFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 33 ~~~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
.+..++|.||+|+|||+++..++...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 46788999999999999988887654
No 298
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.72 E-value=2.2e-05 Score=55.36 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=21.7
Q ss_pred CceEEeCCCCCchHHHHHHHHHHH
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
.++++.||||||||+++..++..+
T Consensus 51 ~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHc
Confidence 579999999999999999988776
No 299
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.72 E-value=2.2e-05 Score=52.58 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=21.6
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHH
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
+..++|.||||+|||+++..++...
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999988764
No 300
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.72 E-value=3.8e-05 Score=56.85 Aligned_cols=26 Identities=35% Similarity=0.529 Sum_probs=23.1
Q ss_pred ceEEeCCCCCchHHHHHHHHHHHHhc
Q psy16285 36 FAIIQGPPGTGKTYVALRIVEGFLKN 61 (97)
Q Consensus 36 ~~~v~Gp~GtGKT~~~~~~~~~~~~~ 61 (97)
++++.||||||||+++.+++..+...
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~ 548 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGD 548 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 59999999999999999999888543
No 301
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.72 E-value=2.9e-05 Score=49.78 Aligned_cols=26 Identities=19% Similarity=0.411 Sum_probs=22.1
Q ss_pred cCCceEEeCCCCCchHHHHHHHHHHH
Q psy16285 33 TREFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 33 ~~~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
.+..++|.||+|+||||++..++...
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 46789999999999999988877654
No 302
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.71 E-value=0.00012 Score=52.43 Aligned_cols=35 Identities=17% Similarity=0.355 Sum_probs=29.0
Q ss_pred ceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeC
Q psy16285 36 FAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCY 77 (97)
Q Consensus 36 ~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~ 77 (97)
.+++.|+||+||||++..++..+... +.++++++.
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~~~-------G~kVllVd~ 137 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQRK-------GWKTCLICA 137 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHT-------TCCEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhC-------CCeEEEEec
Confidence 57889999999999999999888655 667777664
No 303
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.71 E-value=5.1e-05 Score=51.50 Aligned_cols=28 Identities=21% Similarity=0.138 Sum_probs=23.5
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHHHhc
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGFLKN 61 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~~~~ 61 (97)
+..+.|.||||+||||++..++..+...
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~g~~~~~ 82 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALGSLLTAA 82 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhhhC
Confidence 4578999999999999999888776543
No 304
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.71 E-value=3.5e-05 Score=48.38 Aligned_cols=25 Identities=32% Similarity=0.577 Sum_probs=21.9
Q ss_pred CceEEeCCCCCchHHHHHHHHHHHH
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGFL 59 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~~ 59 (97)
+.+.+.||+|+||||++..++..+.
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 5688999999999999888887765
No 305
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.71 E-value=1.5e-05 Score=48.88 Aligned_cols=21 Identities=24% Similarity=0.509 Sum_probs=18.2
Q ss_pred cCCceEEeCCCCCchHHHHHH
Q psy16285 33 TREFAIIQGPPGTGKTYVALR 53 (97)
Q Consensus 33 ~~~~~~v~Gp~GtGKT~~~~~ 53 (97)
.++.+.+.||+|+||||++..
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 356789999999999999883
No 306
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.70 E-value=7.6e-05 Score=46.35 Aligned_cols=27 Identities=19% Similarity=0.288 Sum_probs=22.9
Q ss_pred CceEEeCCCCCchHHHHHHHHHHHHhc
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGFLKN 61 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~~~~ 61 (97)
+.++|.|++|+||||++..++..+...
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~ 33 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCAR 33 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcccc
Confidence 568899999999999999998876543
No 307
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.70 E-value=2.1e-05 Score=49.08 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=19.1
Q ss_pred ceEEeCCCCCchHHHHHHHHHH
Q psy16285 36 FAIIQGPPGTGKTYVALRIVEG 57 (97)
Q Consensus 36 ~~~v~Gp~GtGKT~~~~~~~~~ 57 (97)
.++|.|++|+||||++..+...
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999998888654
No 308
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.70 E-value=1.9e-05 Score=49.84 Aligned_cols=27 Identities=22% Similarity=0.223 Sum_probs=22.8
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHHHh
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGFLK 60 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~~~ 60 (97)
++.+.|.||+|+||||++..++..+..
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~ 51 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQL 51 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 568899999999999999888875543
No 309
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.70 E-value=2.7e-05 Score=55.40 Aligned_cols=24 Identities=38% Similarity=0.629 Sum_probs=20.7
Q ss_pred CceEEeCCCCCchHHHHHHHHHHH
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
..++|.||||||||+++.+++..+
T Consensus 239 ~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 239 RGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CcEEEECcCCCCHHHHHHHHHHHh
Confidence 468999999999999999886653
No 310
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.69 E-value=2.4e-05 Score=49.08 Aligned_cols=25 Identities=24% Similarity=0.235 Sum_probs=21.1
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHH
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
+..+.|.||+|+||||++..+...+
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578899999999999988887765
No 311
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=97.69 E-value=6.8e-05 Score=52.06 Aligned_cols=43 Identities=21% Similarity=0.281 Sum_probs=35.3
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHH
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALD 83 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~ 83 (97)
..+++|.|+||+|||+++..++..++.. +.+++|+=|..+...
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~li~~~~~~-------g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELAYTGLLR-------GDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHHHT-------TCEEEEEEETTHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHHHHC-------CCcEEEEeCCCchhH
Confidence 3578999999999999988888888776 667888888777654
No 312
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.69 E-value=9e-05 Score=54.79 Aligned_cols=40 Identities=20% Similarity=0.298 Sum_probs=30.5
Q ss_pred CHHHHHHHHHHhc---CCceEEeCCCCCchHHHHHHHHHHHHh
Q psy16285 21 NTIQFEAYKAALT---REFAIIQGPPGTGKTYVALRIVEGFLK 60 (97)
Q Consensus 21 ~~~Q~~~i~~~~~---~~~~~v~Gp~GtGKT~~~~~~~~~~~~ 60 (97)
++.+.+.+..+.. ..++++.||||||||+++..++..+..
T Consensus 191 r~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~ 233 (758)
T 1r6b_X 191 REKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQ 233 (758)
T ss_dssp CHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHh
Confidence 5555555555443 358999999999999999999988754
No 313
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.69 E-value=4.3e-05 Score=50.03 Aligned_cols=25 Identities=24% Similarity=0.289 Sum_probs=22.0
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHH
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
+..++|.|++|+||||++..++..+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 7899999999999999988887644
No 314
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.68 E-value=6.4e-05 Score=51.21 Aligned_cols=35 Identities=17% Similarity=0.263 Sum_probs=28.5
Q ss_pred ceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeC
Q psy16285 36 FAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCY 77 (97)
Q Consensus 36 ~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~ 77 (97)
.+.|.|+||+|||+++..++..+... +.+++++..
T Consensus 81 ~I~i~G~~G~GKSTl~~~L~~~l~~~-------g~kV~vi~~ 115 (355)
T 3p32_A 81 RVGITGVPGVGKSTAIEALGMHLIER-------GHRVAVLAV 115 (355)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTT-------TCCEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhC-------CCceEEEec
Confidence 68899999999999999999887655 566666653
No 315
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.67 E-value=2.3e-05 Score=55.97 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=20.3
Q ss_pred ceEEeCCCCCchHHHHHHHHHHH
Q psy16285 36 FAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 36 ~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
.++|.||||||||+++.+++..+
T Consensus 66 GvLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999987654
No 316
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.67 E-value=1.7e-05 Score=51.60 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=20.3
Q ss_pred ceEEeCCCCCchHHHHHHHHHHH
Q psy16285 36 FAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 36 ~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
.+++.|+||+||||++..+...+
T Consensus 34 ~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 34 AILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp EEEEESCGGGTTHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 67899999999999998887765
No 317
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.66 E-value=8.6e-05 Score=47.70 Aligned_cols=39 Identities=15% Similarity=0.026 Sum_probs=31.8
Q ss_pred CceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChH
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNH 80 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~ 80 (97)
...+++||.|+|||+.+..++..+... +++++++.|...
T Consensus 29 ~l~vitG~MgsGKTT~lL~~a~r~~~~-------g~kVli~k~~~d 67 (214)
T 2j9r_A 29 WIEVICGSMFSGKSEELIRRVRRTQFA-------KQHAIVFKPCID 67 (214)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHT-------TCCEEEEECC--
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHC-------CCEEEEEEeccC
Confidence 456789999999999999998888666 789999987543
No 318
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.64 E-value=2e-05 Score=50.31 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=15.8
Q ss_pred CCceEEeCCCCCchHHHHHHHH-HHH
Q psy16285 34 REFAIIQGPPGTGKTYVALRIV-EGF 58 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~-~~~ 58 (97)
+..+.|.||+|+||||++..++ ..+
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 5678999999999999988887 543
No 319
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.63 E-value=3.9e-05 Score=52.22 Aligned_cols=26 Identities=23% Similarity=0.548 Sum_probs=22.9
Q ss_pred ceEEeCCCCCchHHHHHHHHHHHHhc
Q psy16285 36 FAIIQGPPGTGKTYVALRIVEGFLKN 61 (97)
Q Consensus 36 ~~~v~Gp~GtGKT~~~~~~~~~~~~~ 61 (97)
.+.|.||||+|||+++..++..+.+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~ 55 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQ 55 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 67999999999999999998887654
No 320
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.63 E-value=6.7e-05 Score=54.40 Aligned_cols=34 Identities=29% Similarity=0.517 Sum_probs=26.2
Q ss_pred HHHHHHHh-cCCceEEeCCCCCchHHHHHHHHHHH
Q psy16285 25 FEAYKAAL-TREFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 25 ~~~i~~~~-~~~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
.+.+.... .+..+++.||||||||+++..++..+
T Consensus 50 l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 50 VEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTS
T ss_pred HhhccccccCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 33444433 46799999999999999999888765
No 321
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.62 E-value=3.6e-05 Score=48.15 Aligned_cols=21 Identities=29% Similarity=0.387 Sum_probs=18.1
Q ss_pred ceEEeCCCCCchHHHHHHHHH
Q psy16285 36 FAIIQGPPGTGKTYVALRIVE 56 (97)
Q Consensus 36 ~~~v~Gp~GtGKT~~~~~~~~ 56 (97)
.+.|.||+|+||||++..+..
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999888754
No 322
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.61 E-value=9e-05 Score=50.49 Aligned_cols=27 Identities=22% Similarity=0.276 Sum_probs=22.9
Q ss_pred CceEEeCCCCCchHHHHHHHHHHHHhc
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGFLKN 61 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~~~~ 61 (97)
..+.|.|+||+||||++..++..+...
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~~~~~ 101 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKMLTER 101 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhhhc
Confidence 468899999999999999998876544
No 323
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.61 E-value=2e-05 Score=59.11 Aligned_cols=24 Identities=38% Similarity=0.629 Sum_probs=20.5
Q ss_pred CceEEeCCCCCchHHHHHHHHHHH
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
..+++.||||||||+++.+++..+
T Consensus 239 ~GILL~GPPGTGKT~LAraiA~el 262 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp CEEEEECCTTSCHHHHHHHHHTTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999887554
No 324
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=97.61 E-value=6.1e-05 Score=49.69 Aligned_cols=53 Identities=9% Similarity=0.109 Sum_probs=42.4
Q ss_pred CceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhhccC
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKYTQN 95 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~~~~ 95 (97)
..++|.|+||+|||+++...+...+++ +.++++++. .+...++.++.+.++-+
T Consensus 22 s~~li~g~p~~~~~~l~~qfl~~g~~~-------Ge~~~~~~~-~e~~~~l~~~~~~~G~d 74 (260)
T 3bs4_A 22 LILIHEEDASSRGKDILFYILSRKLKS-------DNLVGMFSI-SYPLQLIIRILSRFGVD 74 (260)
T ss_dssp EEEEEECSGGGCHHHHHHHHHHHHHHT-------TCEEEEEEC-SSCHHHHHHHHHHTTCC
T ss_pred cEEEEEeCCCccHHHHHHHHHHHHHHC-------CCcEEEEEE-eCCHHHHHHHHHHcCCC
Confidence 467888999999999999998888877 778888885 55577888888777643
No 325
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.60 E-value=5.1e-05 Score=51.08 Aligned_cols=26 Identities=23% Similarity=0.488 Sum_probs=22.6
Q ss_pred cCCceEEeCCCCCchHHHHHHHHHHH
Q psy16285 33 TREFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 33 ~~~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
.++.+.|.||+|+||||++..++..+
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 36788999999999999988887765
No 326
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.60 E-value=9e-05 Score=49.45 Aligned_cols=36 Identities=22% Similarity=0.291 Sum_probs=28.6
Q ss_pred CceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeC
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCY 77 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~ 77 (97)
..+.+.|++|+||||++..++..+... +.++++...
T Consensus 99 ~~i~i~g~~G~GKTT~~~~la~~~~~~-------~~~v~l~~~ 134 (295)
T 1ls1_A 99 NLWFLVGLQGSGKTTTAAKLALYYKGK-------GRRPLLVAA 134 (295)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHHHHT-------TCCEEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc-------CCeEEEecC
Confidence 467788999999999999998887554 667777653
No 327
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.60 E-value=3.8e-05 Score=47.91 Aligned_cols=21 Identities=33% Similarity=0.287 Sum_probs=18.5
Q ss_pred ceEEeCCCCCchHHHHHHHHH
Q psy16285 36 FAIIQGPPGTGKTYVALRIVE 56 (97)
Q Consensus 36 ~~~v~Gp~GtGKT~~~~~~~~ 56 (97)
.+.|.|++|+||||++..+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 478999999999999888765
No 328
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.60 E-value=3.7e-05 Score=47.00 Aligned_cols=26 Identities=23% Similarity=0.454 Sum_probs=22.8
Q ss_pred cCCceEEeCCCCCchHHHHHHHHHHH
Q psy16285 33 TREFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 33 ~~~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
.+..+.+.||.|+||||++..++..+
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 35688999999999999999888877
No 329
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.60 E-value=4.5e-05 Score=49.58 Aligned_cols=23 Identities=26% Similarity=0.527 Sum_probs=20.2
Q ss_pred CCceEEeCCCCCchHHHHHHHHH
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVE 56 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~ 56 (97)
+..+.|.||+|+||||++..++.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999988873
No 330
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.59 E-value=4.2e-05 Score=57.27 Aligned_cols=24 Identities=38% Similarity=0.602 Sum_probs=21.8
Q ss_pred CceEEeCCCCCchHHHHHHHHHHH
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
..+++.||||||||+++.+++..+
T Consensus 512 ~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 512 KGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp CCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred ceeEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998876
No 331
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=97.59 E-value=0.00015 Score=46.26 Aligned_cols=29 Identities=28% Similarity=0.440 Sum_probs=24.4
Q ss_pred cCCceEEeCCCCCchHHHHHHHHHHHHhc
Q psy16285 33 TREFAIIQGPPGTGKTYVALRIVEGFLKN 61 (97)
Q Consensus 33 ~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~ 61 (97)
++..+++.|++|+||||.+..+...+...
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 45578899999999999999988887554
No 332
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.58 E-value=0.00012 Score=51.47 Aligned_cols=36 Identities=19% Similarity=0.282 Sum_probs=29.3
Q ss_pred ceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeC
Q psy16285 36 FAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCY 77 (97)
Q Consensus 36 ~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~ 77 (97)
.+++.|++|+||||++..++..+... .+.+++++..
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~~l~~~------~G~kVllvd~ 137 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGKFLREK------HKKKVLVVSA 137 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHT------SCCCEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHh------cCCeEEEEec
Confidence 56778999999999999999888664 2677877664
No 333
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.57 E-value=7.7e-05 Score=56.02 Aligned_cols=26 Identities=27% Similarity=0.466 Sum_probs=23.3
Q ss_pred ceEEeCCCCCchHHHHHHHHHHHHhc
Q psy16285 36 FAIIQGPPGTGKTYVALRIVEGFLKN 61 (97)
Q Consensus 36 ~~~v~Gp~GtGKT~~~~~~~~~~~~~ 61 (97)
.+++.||||||||+++..+...+...
T Consensus 590 ~vLl~Gp~GtGKT~lA~~la~~~~~~ 615 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELAKTLAATLFDT 615 (854)
T ss_dssp EEEEBSCSSSSHHHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 68999999999999999999888654
No 334
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.57 E-value=5.3e-05 Score=51.86 Aligned_cols=26 Identities=19% Similarity=0.440 Sum_probs=22.6
Q ss_pred cCCceEEeCCCCCchHHHHHHHHHHH
Q psy16285 33 TREFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 33 ~~~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
.+..++|.||+|+||||++..++..+
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 46799999999999999988887654
No 335
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=97.56 E-value=0.0001 Score=47.50 Aligned_cols=34 Identities=18% Similarity=0.200 Sum_probs=28.3
Q ss_pred CceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEe
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVC 76 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~ 76 (97)
..+++.|.+|+||||++..++..+. . +.+++++.
T Consensus 15 ~i~~~~GkgGvGKTTl~~~La~~l~-~-------g~~v~vvd 48 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLTGEFGRYLE-D-------NYKVAYVN 48 (262)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT-T-------TSCEEEEE
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHH-C-------CCeEEEEe
Confidence 4678899999999999999998886 5 56777665
No 336
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.56 E-value=5.6e-05 Score=48.62 Aligned_cols=26 Identities=31% Similarity=0.584 Sum_probs=22.3
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHHH
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGFL 59 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~~ 59 (97)
+..+++.||+|+||||++..+...+-
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 45788999999999999988888763
No 337
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.55 E-value=4.5e-05 Score=49.34 Aligned_cols=25 Identities=36% Similarity=0.417 Sum_probs=20.8
Q ss_pred cCCceEEeCCCCCchHHHHHHHHHH
Q psy16285 33 TREFAIIQGPPGTGKTYVALRIVEG 57 (97)
Q Consensus 33 ~~~~~~v~Gp~GtGKT~~~~~~~~~ 57 (97)
.++.+.|.||+|+||||++..++..
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3678999999999999998777543
No 338
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.54 E-value=4.5e-05 Score=51.75 Aligned_cols=23 Identities=26% Similarity=0.567 Sum_probs=20.7
Q ss_pred ceEEeCCCCCchHHHHHHHHHHH
Q psy16285 36 FAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 36 ~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
.++|.||||+|||+++..++..+
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68899999999999999998765
No 339
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.54 E-value=2.2e-05 Score=49.16 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=21.5
Q ss_pred ceEEeCCCCCchHHHHHHHHHHHHh
Q psy16285 36 FAIIQGPPGTGKTYVALRIVEGFLK 60 (97)
Q Consensus 36 ~~~v~Gp~GtGKT~~~~~~~~~~~~ 60 (97)
.++|.|++|+||||++..+...+-.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4689999999999999998887743
No 340
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.53 E-value=0.00011 Score=59.53 Aligned_cols=39 Identities=18% Similarity=0.305 Sum_probs=33.5
Q ss_pred cCCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCC
Q psy16285 33 TREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYT 78 (97)
Q Consensus 33 ~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~ 78 (97)
.+.++++.||||||||+++..++...++. +.++++++..
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~k~-------Ge~~~Fit~e 1118 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQRE-------GKTCAFIDAE 1118 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT-------TCCEEEECTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHc-------CCeEEEEEcc
Confidence 45789999999999999999999999877 6778887743
No 341
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=97.53 E-value=2.7e-05 Score=53.19 Aligned_cols=24 Identities=25% Similarity=0.645 Sum_probs=21.6
Q ss_pred CceEEeCCCCCchHHHHHHHHHHH
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
..++|.||+|+|||+++..++..+
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHC
Confidence 478999999999999999998776
No 342
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.52 E-value=7.4e-05 Score=48.51 Aligned_cols=25 Identities=28% Similarity=0.541 Sum_probs=20.9
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHH
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
...+.|.||+|+||||++..++..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3478999999999999998887554
No 343
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.52 E-value=3.3e-05 Score=52.35 Aligned_cols=26 Identities=31% Similarity=0.331 Sum_probs=22.4
Q ss_pred cCCceEEeCCCCCchHHHHHHHHHHH
Q psy16285 33 TREFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 33 ~~~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
.++.+.|.||+|+||||++..++..+
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999988877654
No 344
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.52 E-value=8e-05 Score=51.47 Aligned_cols=25 Identities=28% Similarity=0.519 Sum_probs=21.5
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHH
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
+..++|.||||+||||++..++...
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4688999999999999998888653
No 345
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.51 E-value=7.9e-05 Score=46.33 Aligned_cols=23 Identities=35% Similarity=0.658 Sum_probs=19.8
Q ss_pred ceEEeCCCCCchHHHHHHHHHHH
Q psy16285 36 FAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 36 ~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
.+.|.|++|+||||++..+...+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 67899999999999988886643
No 346
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.50 E-value=7e-05 Score=50.41 Aligned_cols=27 Identities=15% Similarity=0.095 Sum_probs=21.9
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHHHh
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGFLK 60 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~~~ 60 (97)
+..+.|.||+|+||||++..+...+-.
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCchHHHHHHHHHhhccc
Confidence 447889999999999998877766643
No 347
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.50 E-value=7e-05 Score=48.29 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=21.1
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHH
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
+..+.|.||+|+||||++..+...+
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4478899999999999988877655
No 348
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.50 E-value=0.00014 Score=51.05 Aligned_cols=35 Identities=23% Similarity=0.291 Sum_probs=28.4
Q ss_pred ceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeC
Q psy16285 36 FAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCY 77 (97)
Q Consensus 36 ~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~ 77 (97)
.+++.|++|+||||++..++..+... +.+++++..
T Consensus 100 vi~i~G~~GsGKTT~~~~LA~~l~~~-------g~~Vllvd~ 134 (425)
T 2ffh_A 100 LWFLVGLQGSGKTTTAAKLALYYKGK-------GRRPLLVAA 134 (425)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTT-------TCCEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc-------CCeEEEeec
Confidence 57788999999999999998888654 667777663
No 349
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.50 E-value=5.1e-05 Score=48.69 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=20.7
Q ss_pred cCCceEEeCCCCCchHHHHHHHHHH
Q psy16285 33 TREFAIIQGPPGTGKTYVALRIVEG 57 (97)
Q Consensus 33 ~~~~~~v~Gp~GtGKT~~~~~~~~~ 57 (97)
.++.+.|.||+|+||||++..++..
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3678899999999999998777543
No 350
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.50 E-value=4.5e-05 Score=57.11 Aligned_cols=24 Identities=38% Similarity=0.629 Sum_probs=20.7
Q ss_pred CceEEeCCCCCchHHHHHHHHHHH
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
..++|.||||||||+++..++..+
T Consensus 239 ~~vLL~Gp~GtGKTtLarala~~l 262 (806)
T 1ypw_A 239 RGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp CEEEECSCTTSSHHHHHHHHHHTT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHc
Confidence 478999999999999998886653
No 351
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.49 E-value=0.00025 Score=50.56 Aligned_cols=28 Identities=25% Similarity=0.585 Sum_probs=22.5
Q ss_pred cCCceEEeCCCCCchHHHHHHH-HHHHHh
Q psy16285 33 TREFAIIQGPPGTGKTYVALRI-VEGFLK 60 (97)
Q Consensus 33 ~~~~~~v~Gp~GtGKT~~~~~~-~~~~~~ 60 (97)
.+..+.|.||+|+||||++..+ +..+..
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~ 66 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQFLYNGIIE 66 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 4678999999999999998886 345544
No 352
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.49 E-value=6.6e-05 Score=48.62 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=20.0
Q ss_pred ceEEeCCCCCchHHHHHHHHHHH
Q psy16285 36 FAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 36 ~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
.+.|.|++||||||++..+...+
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999988887754
No 353
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=97.48 E-value=7.3e-05 Score=49.28 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=19.2
Q ss_pred ceEEeCCCCCchHHHHHHHHHH
Q psy16285 36 FAIIQGPPGTGKTYVALRIVEG 57 (97)
Q Consensus 36 ~~~v~Gp~GtGKT~~~~~~~~~ 57 (97)
.+++.|+||+||||++..+...
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5789999999999998888763
No 354
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.48 E-value=6.2e-05 Score=48.71 Aligned_cols=26 Identities=15% Similarity=0.325 Sum_probs=21.6
Q ss_pred cCCceEEeCCCCCchHHHHHHHHHHH
Q psy16285 33 TREFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 33 ~~~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
.++.+.|.||+|+||||++..++..+
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 36789999999999999988776544
No 355
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.48 E-value=0.00013 Score=48.79 Aligned_cols=24 Identities=21% Similarity=0.165 Sum_probs=20.4
Q ss_pred CceEEeCCCCCchHHHHHHHHHHH
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
..+.|.||+|+||||++..+...+
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 477899999999999988777665
No 356
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.47 E-value=6.6e-05 Score=49.30 Aligned_cols=25 Identities=24% Similarity=0.199 Sum_probs=20.9
Q ss_pred cCCceEEeCCCCCchHHHHHHHHHH
Q psy16285 33 TREFAIIQGPPGTGKTYVALRIVEG 57 (97)
Q Consensus 33 ~~~~~~v~Gp~GtGKT~~~~~~~~~ 57 (97)
.++.+.|.||+|+||||++..++..
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3678899999999999998877544
No 357
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=97.47 E-value=0.00032 Score=45.55 Aligned_cols=29 Identities=31% Similarity=0.540 Sum_probs=24.9
Q ss_pred cCCceEEeCCCCCchHHHHHHHHHHHHhc
Q psy16285 33 TREFAIIQGPPGTGKTYVALRIVEGFLKN 61 (97)
Q Consensus 33 ~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~ 61 (97)
++..+++.|++|+||||.+..+...+...
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~ 54 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQN 54 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 45678999999999999999998888655
No 358
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.47 E-value=7.2e-05 Score=47.86 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=21.5
Q ss_pred cCCceEEeCCCCCchHHHHHHHHHHH
Q psy16285 33 TREFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 33 ~~~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
.++.+.|.||+|+||||++..++..+
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 46789999999999999988775543
No 359
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.47 E-value=5.2e-05 Score=51.45 Aligned_cols=24 Identities=25% Similarity=0.505 Sum_probs=21.0
Q ss_pred CceEEeCCCCCchHHHHHHHHHHH
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
..++|.||+|+|||+++..++..+
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhC
Confidence 467899999999999999998765
No 360
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.46 E-value=6e-05 Score=47.20 Aligned_cols=24 Identities=25% Similarity=0.261 Sum_probs=20.1
Q ss_pred CceEEeCCCCCchHHHHHHHHHHH
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
..+.|.|++|+||||++..+...+
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 467899999999999988877643
No 361
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.46 E-value=8.2e-05 Score=54.99 Aligned_cols=23 Identities=30% Similarity=0.606 Sum_probs=21.2
Q ss_pred ceEEeCCCCCchHHHHHHHHHHH
Q psy16285 36 FAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 36 ~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
++++.||||||||+++..++..+
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHh
Confidence 68999999999999999998877
No 362
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.46 E-value=6.8e-05 Score=49.70 Aligned_cols=25 Identities=24% Similarity=0.222 Sum_probs=21.0
Q ss_pred cCCceEEeCCCCCchHHHHHHHHHH
Q psy16285 33 TREFAIIQGPPGTGKTYVALRIVEG 57 (97)
Q Consensus 33 ~~~~~~v~Gp~GtGKT~~~~~~~~~ 57 (97)
.++.+.|.||+|+||||++..++..
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcC
Confidence 3678999999999999998877543
No 363
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=97.46 E-value=0.00019 Score=45.46 Aligned_cols=38 Identities=26% Similarity=0.375 Sum_probs=29.3
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCC
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYT 78 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~ 78 (97)
+...++.||.|+|||+-+...+...... +++++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~-------~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIA-------QYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHT-------TCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHc-------CCeEEEEccc
Confidence 4578999999999997666666666555 6789988875
No 364
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.45 E-value=9e-05 Score=48.27 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=21.5
Q ss_pred cCCceEEeCCCCCchHHHHHHHHHH
Q psy16285 33 TREFAIIQGPPGTGKTYVALRIVEG 57 (97)
Q Consensus 33 ~~~~~~v~Gp~GtGKT~~~~~~~~~ 57 (97)
.++.+.|.||+|+||||++..++..
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3678999999999999998887764
No 365
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=97.45 E-value=6.8e-05 Score=47.85 Aligned_cols=25 Identities=32% Similarity=0.373 Sum_probs=20.8
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHH
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
+..++|.||||+|||+++..++...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3467999999999999998887654
No 366
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.45 E-value=7.2e-05 Score=48.94 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=21.0
Q ss_pred cCCceEEeCCCCCchHHHHHHHHHH
Q psy16285 33 TREFAIIQGPPGTGKTYVALRIVEG 57 (97)
Q Consensus 33 ~~~~~~v~Gp~GtGKT~~~~~~~~~ 57 (97)
.++.+.|.||+|+||||++..++..
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3678999999999999998877544
No 367
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.45 E-value=8.1e-05 Score=46.11 Aligned_cols=22 Identities=32% Similarity=0.320 Sum_probs=18.8
Q ss_pred CceEEeCCCCCchHHHHHHHHH
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVE 56 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~ 56 (97)
..+.|.|++||||||++..+..
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999999888764
No 368
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.44 E-value=9.7e-05 Score=48.63 Aligned_cols=25 Identities=28% Similarity=0.502 Sum_probs=21.5
Q ss_pred cCCceEEeCCCCCchHHHHHHHHHH
Q psy16285 33 TREFAIIQGPPGTGKTYVALRIVEG 57 (97)
Q Consensus 33 ~~~~~~v~Gp~GtGKT~~~~~~~~~ 57 (97)
.++.+.|.||+|+||||++..++..
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3678999999999999998887765
No 369
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.43 E-value=8e-05 Score=47.94 Aligned_cols=26 Identities=23% Similarity=0.460 Sum_probs=21.6
Q ss_pred cCCceEEeCCCCCchHHHHHHHHHHH
Q psy16285 33 TREFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 33 ~~~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
.++.+.|.||.|+||||++..++..+
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 36789999999999999988776544
No 370
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.43 E-value=0.00014 Score=50.63 Aligned_cols=27 Identities=15% Similarity=0.092 Sum_probs=21.9
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHHHh
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGFLK 60 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~~~ 60 (97)
+..+.|.||||+|||+++..++.....
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~ 204 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQI 204 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhcc
Confidence 468899999999999999877655443
No 371
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.43 E-value=7.8e-05 Score=48.30 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=21.0
Q ss_pred cCCceEEeCCCCCchHHHHHHHHHH
Q psy16285 33 TREFAIIQGPPGTGKTYVALRIVEG 57 (97)
Q Consensus 33 ~~~~~~v~Gp~GtGKT~~~~~~~~~ 57 (97)
.++.+.|.||+|+||||++..++..
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3678999999999999998877544
No 372
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=97.43 E-value=0.0004 Score=44.34 Aligned_cols=28 Identities=29% Similarity=0.438 Sum_probs=24.1
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHHHhc
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGFLKN 61 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~~~~ 61 (97)
+..+++.|++|+||||.+..+...+...
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~ 30 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQL 30 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4578899999999999999998888655
No 373
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.43 E-value=7.9e-05 Score=48.54 Aligned_cols=25 Identities=28% Similarity=0.259 Sum_probs=21.1
Q ss_pred cCCceEEeCCCCCchHHHHHHHHHH
Q psy16285 33 TREFAIIQGPPGTGKTYVALRIVEG 57 (97)
Q Consensus 33 ~~~~~~v~Gp~GtGKT~~~~~~~~~ 57 (97)
.++.+.|.||+|+||||++..++..
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3678999999999999998877554
No 374
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.43 E-value=0.00019 Score=48.64 Aligned_cols=28 Identities=18% Similarity=0.208 Sum_probs=23.1
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHHHhc
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGFLKN 61 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~~~~ 61 (97)
...+.+.|+||+||||++..++..+...
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~l~~~~~~~ 83 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFGMLLIRE 83 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 3478899999999999999988776543
No 375
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=97.43 E-value=0.00042 Score=49.65 Aligned_cols=25 Identities=24% Similarity=0.515 Sum_probs=21.7
Q ss_pred CceEEeCCCCCchHHHHHHHHHHHH
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGFL 59 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~~ 59 (97)
..+++.|.||+||||++..++..+-
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRYLN 60 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3678999999999999999987763
No 376
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.42 E-value=8.2e-05 Score=49.00 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=20.6
Q ss_pred CCceEEeCCCCCchHHHHHHHHHH
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEG 57 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~ 57 (97)
++.+.|.||+|+||||++..++..
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcC
Confidence 678899999999999998877544
No 377
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.42 E-value=8.2e-05 Score=49.00 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=21.1
Q ss_pred cCCceEEeCCCCCchHHHHHHHHHH
Q psy16285 33 TREFAIIQGPPGTGKTYVALRIVEG 57 (97)
Q Consensus 33 ~~~~~~v~Gp~GtGKT~~~~~~~~~ 57 (97)
.++.+.|.||+|+||||++..++..
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3678999999999999998877543
No 378
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.42 E-value=8.8e-05 Score=50.68 Aligned_cols=24 Identities=29% Similarity=0.628 Sum_probs=21.2
Q ss_pred CceEEeCCCCCchHHHHHHHHHHH
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
..++|.||+|+|||+++..++..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 367899999999999999998876
No 379
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.41 E-value=9e-05 Score=50.95 Aligned_cols=26 Identities=27% Similarity=0.240 Sum_probs=21.4
Q ss_pred cCCceEEeCCCCCchHHHHHHHHHHH
Q psy16285 33 TREFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 33 ~~~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
.++.+.|.||+|+||||++..++...
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 36789999999999999987776543
No 380
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=97.41 E-value=6.7e-05 Score=47.00 Aligned_cols=45 Identities=13% Similarity=0.237 Sum_probs=27.7
Q ss_pred eEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhh
Q psy16285 37 AIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKY 92 (97)
Q Consensus 37 ~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~ 92 (97)
++|+|++|||||+.+..++.. +.++++++.....-+++.+++..+
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-----------~~~~~yiaT~~~~d~e~~~rI~~h 46 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-----------APQVLYIATSQILDDEMAARIQHH 46 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-----------CSSEEEEECCCC------CHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHhc-----------CCCeEEEecCCCCCHHHHHHHHHH
Confidence 689999999999998877533 235667775443345666666554
No 381
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.41 E-value=0.00013 Score=46.73 Aligned_cols=26 Identities=35% Similarity=0.480 Sum_probs=21.2
Q ss_pred cCCceEEeCCCCCchHHHHHHHHHHH
Q psy16285 33 TREFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 33 ~~~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
.+..+.|.|++|+||||++..+...+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34578999999999999988876543
No 382
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.41 E-value=0.00021 Score=57.26 Aligned_cols=36 Identities=19% Similarity=0.357 Sum_probs=29.5
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEe
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVC 76 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~ 76 (97)
+..++|.||||+|||+++..++..+... +.++++++
T Consensus 732 G~lVlI~G~PG~GKTtLal~lA~~aa~~-------g~~VlyiS 767 (1706)
T 3cmw_A 732 GRIVEIYGPESSGKTTLTLQVIAAAQRE-------GKTCAFID 767 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT-------TCCEEEEC
T ss_pred CceEEEECCCCCCcHHHHHHHHHHHHHc-------CCCeEEEe
Confidence 4578999999999999999999988765 45666655
No 383
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.41 E-value=0.00013 Score=45.88 Aligned_cols=23 Identities=26% Similarity=0.254 Sum_probs=19.9
Q ss_pred CceEEeCCCCCchHHHHHHHHHH
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEG 57 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~ 57 (97)
..+.|+|++||||||++..+...
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46789999999999998888765
No 384
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.40 E-value=0.0001 Score=45.15 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=21.0
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHH
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
.+..+|.||+|+|||+++.++...+
T Consensus 26 ~g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 26 KGFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SSEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999988876654
No 385
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.40 E-value=9.1e-05 Score=48.57 Aligned_cols=25 Identities=32% Similarity=0.284 Sum_probs=21.0
Q ss_pred cCCceEEeCCCCCchHHHHHHHHHH
Q psy16285 33 TREFAIIQGPPGTGKTYVALRIVEG 57 (97)
Q Consensus 33 ~~~~~~v~Gp~GtGKT~~~~~~~~~ 57 (97)
.++.+.|.||+|+||||++..++..
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3678999999999999998877544
No 386
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.40 E-value=8.9e-05 Score=48.63 Aligned_cols=26 Identities=19% Similarity=0.328 Sum_probs=21.7
Q ss_pred cCCceEEeCCCCCchHHHHHHHHHHH
Q psy16285 33 TREFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 33 ~~~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
.++.+.|.||+|+||||++..++..+
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 36789999999999999988876543
No 387
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.40 E-value=0.00022 Score=57.16 Aligned_cols=38 Identities=18% Similarity=0.318 Sum_probs=31.9
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCC
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYT 78 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~ 78 (97)
+..++|.||||||||+++..++...+.. +.++++++..
T Consensus 34 G~i~lI~G~pGsGKT~LAlqla~~~~~~-------G~~vlYI~te 71 (1706)
T 3cmw_A 34 GRIVEIYGPESSGKTTLTLQVIAAAQRE-------GKTCAFIDAE 71 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT-------TCCEEEECTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhC-------CCceEEEEec
Confidence 5689999999999999999999888766 6677777753
No 388
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.40 E-value=9.3e-05 Score=48.34 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=21.4
Q ss_pred cCCceEEeCCCCCchHHHHHHHHHHH
Q psy16285 33 TREFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 33 ~~~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
.++.+.|.||+|+||||++..++..+
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 36788999999999999988776543
No 389
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.40 E-value=8.6e-05 Score=49.90 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=19.6
Q ss_pred CceEEeCCCCCchHHHHHHHHHH
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEG 57 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~ 57 (97)
+.++|+|+.|+||||++..+...
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHS
T ss_pred cEEEEEecCCCCHHHHHHHHHhh
Confidence 46789999999999998887764
No 390
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.39 E-value=9.4e-05 Score=50.08 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=20.9
Q ss_pred CceEEeCCCCCchHHHHHHHHHHH
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
..++|.||+|+|||+++..++..+
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCccCHHHHHHHHHHhC
Confidence 357899999999999999998765
No 391
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.39 E-value=0.00028 Score=47.80 Aligned_cols=23 Identities=17% Similarity=0.150 Sum_probs=19.4
Q ss_pred ceEEeCCCCCchHHHHHHHHHHH
Q psy16285 36 FAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 36 ~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
.+.|.||+|+||||++..+...+
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57889999999999987776655
No 392
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.39 E-value=9.1e-05 Score=48.88 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=21.0
Q ss_pred cCCceEEeCCCCCchHHHHHHHHHH
Q psy16285 33 TREFAIIQGPPGTGKTYVALRIVEG 57 (97)
Q Consensus 33 ~~~~~~v~Gp~GtGKT~~~~~~~~~ 57 (97)
.++.+.|.||+|+||||++..++..
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3678999999999999998877544
No 393
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.39 E-value=7.6e-05 Score=48.41 Aligned_cols=26 Identities=19% Similarity=0.360 Sum_probs=21.3
Q ss_pred cCCceEEeCCCCCchHHHHHHHHHHH
Q psy16285 33 TREFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 33 ~~~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
.++.+.|.||+|+||||++..++..+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 35688999999999999988776543
No 394
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.39 E-value=9.6e-05 Score=49.03 Aligned_cols=26 Identities=23% Similarity=0.116 Sum_probs=21.4
Q ss_pred cCCceEEeCCCCCchHHHHHHHHHHH
Q psy16285 33 TREFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 33 ~~~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
.++.+.|.||+|+||||++..++..+
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 36788999999999999988775443
No 395
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.39 E-value=0.00012 Score=50.32 Aligned_cols=26 Identities=31% Similarity=0.341 Sum_probs=21.5
Q ss_pred cCCceEEeCCCCCchHHHHHHHHHHH
Q psy16285 33 TREFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 33 ~~~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
.++.+.|.||+|+||||++..++...
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 36789999999999999988776443
No 396
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=97.38 E-value=0.00052 Score=48.85 Aligned_cols=51 Identities=14% Similarity=0.287 Sum_probs=43.5
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChHHHHHHHHHHHhhcc
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKYTQ 94 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~~~l~~~~~ 94 (97)
+....+.|.+|+|||.++..++... ++++++++++...+.++.+.++.|..
T Consensus 14 ~~~~~l~g~~gs~ka~~~a~l~~~~----------~~p~lvv~~~~~~A~~l~~~l~~~~~ 64 (483)
T 3hjh_A 14 GEQRLLGELTGAACATLVAEIAERH----------AGPVVLIAPDMQNALRLHDEISQFTD 64 (483)
T ss_dssp TCEEEEECCCTTHHHHHHHHHHHHS----------SSCEEEEESSHHHHHHHHHHHHHTCS
T ss_pred CCeEEEeCCCchHHHHHHHHHHHHh----------CCCEEEEeCCHHHHHHHHHHHHhhCC
Confidence 4578999999999999977776432 66899999999999999999998864
No 397
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.37 E-value=0.00013 Score=48.63 Aligned_cols=25 Identities=28% Similarity=0.809 Sum_probs=21.3
Q ss_pred ceEEeCCCCCchHHHHHHHHHHHHh
Q psy16285 36 FAIIQGPPGTGKTYVALRIVEGFLK 60 (97)
Q Consensus 36 ~~~v~Gp~GtGKT~~~~~~~~~~~~ 60 (97)
.+.|.||+|+||||++..+...+-.
T Consensus 33 ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 5789999999999998888777754
No 398
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.37 E-value=0.00012 Score=47.50 Aligned_cols=24 Identities=25% Similarity=0.516 Sum_probs=20.2
Q ss_pred CceEEeCCCCCchHHHHHHHHHHH
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
+.+.|.||+|+||||++..++..+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 678899999999999988776543
No 399
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.37 E-value=0.00013 Score=45.99 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=18.8
Q ss_pred CceEEeCCCCCchHHHHHHHHH
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVE 56 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~ 56 (97)
..+.|.|++|+||||++..+..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999999888754
No 400
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.37 E-value=0.00013 Score=50.59 Aligned_cols=26 Identities=31% Similarity=0.437 Sum_probs=21.5
Q ss_pred cCCceEEeCCCCCchHHHHHHHHHHH
Q psy16285 33 TREFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 33 ~~~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
.++.+.|.||+|+||||++..++...
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 36789999999999999987776543
No 401
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=97.37 E-value=6.4e-05 Score=54.59 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=20.5
Q ss_pred ceEEeCCCCCchHHHHHHHHHHH
Q psy16285 36 FAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 36 ~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
++++.||||||||+++..++..+
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTC
T ss_pred ceEEECCCchHHHHHHHHHHHhC
Confidence 79999999999999998887654
No 402
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.37 E-value=0.00013 Score=50.20 Aligned_cols=26 Identities=35% Similarity=0.578 Sum_probs=21.4
Q ss_pred cCCceEEeCCCCCchHHHHHHHHHHH
Q psy16285 33 TREFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 33 ~~~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
.++.+.|.||+|+||||++..++...
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 36789999999999999987776543
No 403
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.37 E-value=0.00013 Score=50.19 Aligned_cols=26 Identities=31% Similarity=0.586 Sum_probs=21.4
Q ss_pred cCCceEEeCCCCCchHHHHHHHHHHH
Q psy16285 33 TREFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 33 ~~~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
.++.+.|.||+|+||||++..++...
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 36788999999999999988776543
No 404
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.36 E-value=0.00011 Score=48.35 Aligned_cols=25 Identities=20% Similarity=0.323 Sum_probs=20.9
Q ss_pred cCCceEEeCCCCCchHHHHHHHHHH
Q psy16285 33 TREFAIIQGPPGTGKTYVALRIVEG 57 (97)
Q Consensus 33 ~~~~~~v~Gp~GtGKT~~~~~~~~~ 57 (97)
.++.+.|.||+|+||||++..++..
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3678899999999999998877544
No 405
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.35 E-value=0.00014 Score=50.24 Aligned_cols=25 Identities=36% Similarity=0.502 Sum_probs=21.0
Q ss_pred cCCceEEeCCCCCchHHHHHHHHHH
Q psy16285 33 TREFAIIQGPPGTGKTYVALRIVEG 57 (97)
Q Consensus 33 ~~~~~~v~Gp~GtGKT~~~~~~~~~ 57 (97)
.++.+.|.||+|+||||++..++..
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCChHHHHHHHHHcC
Confidence 3678999999999999998777644
No 406
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.35 E-value=0.00014 Score=50.21 Aligned_cols=25 Identities=40% Similarity=0.521 Sum_probs=21.1
Q ss_pred cCCceEEeCCCCCchHHHHHHHHHH
Q psy16285 33 TREFAIIQGPPGTGKTYVALRIVEG 57 (97)
Q Consensus 33 ~~~~~~v~Gp~GtGKT~~~~~~~~~ 57 (97)
.++.+.|.||+|+||||++..++..
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcC
Confidence 3678999999999999998777644
No 407
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.34 E-value=0.00054 Score=48.97 Aligned_cols=42 Identities=21% Similarity=0.266 Sum_probs=32.7
Q ss_pred cCCCCCHHHHHHHHHHhc-----CCceEEeCCCCCchHHHHHHHHHH
Q psy16285 16 EELGLNTIQFEAYKAALT-----REFAIIQGPPGTGKTYVALRIVEG 57 (97)
Q Consensus 16 ~~~~l~~~Q~~~i~~~~~-----~~~~~v~Gp~GtGKT~~~~~~~~~ 57 (97)
..+.-++...+.+..... .+.+.|.||+|.|||+++..++..
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 170 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRD 170 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCC
T ss_pred CeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhc
Confidence 445567888888887764 347899999999999999887654
No 408
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.34 E-value=0.00012 Score=47.94 Aligned_cols=26 Identities=15% Similarity=0.218 Sum_probs=21.4
Q ss_pred cCCceEEeCCCCCchHHHHHHHHHHH
Q psy16285 33 TREFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 33 ~~~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
.++.+.|.||+|+||||++..++..+
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 36788999999999999987776543
No 409
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.33 E-value=7.6e-05 Score=46.20 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=22.3
Q ss_pred CceEEeCCCCCchHHHHHHHHHHHHhc
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGFLKN 61 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~~~~ 61 (97)
+.+.|.|++|+||||++..++..+-..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 457899999999999988888776543
No 410
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=97.33 E-value=0.00014 Score=51.49 Aligned_cols=29 Identities=28% Similarity=0.226 Sum_probs=24.1
Q ss_pred cCCceEEeCCCCCchHHHHHHHHHHHHhc
Q psy16285 33 TREFAIIQGPPGTGKTYVALRIVEGFLKN 61 (97)
Q Consensus 33 ~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~ 61 (97)
.++.+.|.||+|+||||++..++..+...
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~ 165 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYALKF 165 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTTHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCccccc
Confidence 46799999999999999988887766444
No 411
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.29 E-value=0.00017 Score=47.59 Aligned_cols=25 Identities=16% Similarity=0.324 Sum_probs=20.4
Q ss_pred ceEEeCCCCCchHHHHHHHHHHHHh
Q psy16285 36 FAIIQGPPGTGKTYVALRIVEGFLK 60 (97)
Q Consensus 36 ~~~v~Gp~GtGKT~~~~~~~~~~~~ 60 (97)
++.|.||+|+||||++..++.....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~ 28 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVS 28 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4689999999999998888766533
No 412
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.29 E-value=0.00011 Score=50.22 Aligned_cols=25 Identities=36% Similarity=0.510 Sum_probs=21.0
Q ss_pred cCCceEEeCCCCCchHHHHHHHHHH
Q psy16285 33 TREFAIIQGPPGTGKTYVALRIVEG 57 (97)
Q Consensus 33 ~~~~~~v~Gp~GtGKT~~~~~~~~~ 57 (97)
.++.+.|.||+|+||||++..++..
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTS
T ss_pred CCCEEEEECCCCccHHHHHHHHHcC
Confidence 3678999999999999998777644
No 413
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.29 E-value=0.0002 Score=49.27 Aligned_cols=25 Identities=28% Similarity=0.521 Sum_probs=21.2
Q ss_pred ceEEeCCCCCchHHHHHHHHHHHHh
Q psy16285 36 FAIIQGPPGTGKTYVALRIVEGFLK 60 (97)
Q Consensus 36 ~~~v~Gp~GtGKT~~~~~~~~~~~~ 60 (97)
++++.||+|+|||+++..++..+-.
T Consensus 26 ~i~l~G~~G~GKTTl~~~la~~l~~ 50 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELCQIINE 50 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCC
Confidence 4899999999999999888776643
No 414
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.29 E-value=0.00032 Score=48.17 Aligned_cols=31 Identities=26% Similarity=0.356 Sum_probs=24.3
Q ss_pred HHHHhcCCceEEeCCCCCchHHHHHHHHHHH
Q psy16285 28 YKAALTREFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 28 i~~~~~~~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
+.....+..+.|.||+|+||||++..++...
T Consensus 209 L~~~~~G~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 209 LEEALTGRISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp HHHHHTTSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred HHHhcCCCEEEEECCCCccHHHHHHHHhccc
Confidence 3344567789999999999999988876543
No 415
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=97.28 E-value=0.00051 Score=44.32 Aligned_cols=28 Identities=21% Similarity=0.324 Sum_probs=20.7
Q ss_pred cCCceEEeCCCCCchHHHHHHHHHHHHh
Q psy16285 33 TREFAIIQGPPGTGKTYVALRIVEGFLK 60 (97)
Q Consensus 33 ~~~~~~v~Gp~GtGKT~~~~~~~~~~~~ 60 (97)
++..+++.||+|+||||.+..+...+..
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~ 51 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQE 51 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4567899999999999999988887744
No 416
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.28 E-value=0.00082 Score=47.02 Aligned_cols=40 Identities=23% Similarity=0.318 Sum_probs=30.7
Q ss_pred HHHHHHHHHHh---cCCceEEeCCCCCchHHHHHHHHHHHHhc
Q psy16285 22 TIQFEAYKAAL---TREFAIIQGPPGTGKTYVALRIVEGFLKN 61 (97)
Q Consensus 22 ~~Q~~~i~~~~---~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~ 61 (97)
+.-..+|+... +++...|.||+|+|||+++..++..+.++
T Consensus 159 ~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~ 201 (422)
T 3ice_A 159 DLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYN 201 (422)
T ss_dssp HHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHH
T ss_pred cccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhc
Confidence 44455666544 47899999999999999998888777654
No 417
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.27 E-value=0.00015 Score=47.75 Aligned_cols=25 Identities=40% Similarity=0.470 Sum_probs=21.6
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHH
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
++.+.|.||+|+||||++..++..+
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 5688999999999999988887655
No 418
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.26 E-value=0.00034 Score=46.70 Aligned_cols=28 Identities=29% Similarity=0.487 Sum_probs=22.5
Q ss_pred HHHHhcCCceEEeCCCCCchHHHHHHHH
Q psy16285 28 YKAALTREFAIIQGPPGTGKTYVALRIV 55 (97)
Q Consensus 28 i~~~~~~~~~~v~Gp~GtGKT~~~~~~~ 55 (97)
+.....+....+.||+|+||||++..+.
T Consensus 159 L~~~l~G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 159 LVDYLEGFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HHHHTTTCEEEEECSTTSSHHHHHHHHH
T ss_pred HHhhccCcEEEEECCCCCCHHHHHHHHH
Confidence 3333456788999999999999988887
No 419
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.26 E-value=0.00025 Score=47.15 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=18.2
Q ss_pred CceEEeCCCCCchHHHHHHHHHHHH
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGFL 59 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~~ 59 (97)
..+.|.||+|+||||++..+...+-
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4678999999999999988877654
No 420
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=97.26 E-value=0.00019 Score=50.17 Aligned_cols=23 Identities=26% Similarity=0.680 Sum_probs=20.8
Q ss_pred ceEEeCCCCCchHHHHHHHHHHH
Q psy16285 36 FAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 36 ~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
.++|.||+|+|||+++..++..+
T Consensus 4 ~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHH
T ss_pred EEEEECcchhhHHHHHHHHHHHC
Confidence 57899999999999999998876
No 421
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=97.26 E-value=0.00048 Score=49.65 Aligned_cols=37 Identities=19% Similarity=0.329 Sum_probs=30.8
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeC
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCY 77 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~ 77 (97)
...+++.|.+|+||||++..++..+.+. +++++++..
T Consensus 8 ~~i~~~sgkGGvGKTT~a~~lA~~lA~~-------G~rVLlvd~ 44 (589)
T 1ihu_A 8 PPYLFFTGKGGVGKTSISCATAIRLAEQ-------GKRVLLVST 44 (589)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHT-------TCCEEEEEC
T ss_pred CEEEEEeCCCcCHHHHHHHHHHHHHHHC-------CCcEEEEEC
Confidence 3567889999999999999999998776 678888653
No 422
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.26 E-value=0.00011 Score=51.10 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=19.0
Q ss_pred CceEEeCCCCCchHHHHHHHHH
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVE 56 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~ 56 (97)
..+++.|+||+||||++..++.
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTG
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999988753
No 423
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.26 E-value=0.00013 Score=49.69 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=21.7
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHH
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
+..+.|.||||+|||+++..++..+
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999988887765
No 424
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.26 E-value=0.00023 Score=42.85 Aligned_cols=26 Identities=27% Similarity=0.471 Sum_probs=21.7
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHHH
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGFL 59 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~~ 59 (97)
.+..+|.||+|+|||+++.++...+.
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l~ 48 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGLY 48 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 45789999999999999888876653
No 425
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.26 E-value=0.00017 Score=50.02 Aligned_cols=25 Identities=16% Similarity=0.194 Sum_probs=21.4
Q ss_pred cCCceEEeCCCCCchHHHHHHHHHH
Q psy16285 33 TREFAIIQGPPGTGKTYVALRIVEG 57 (97)
Q Consensus 33 ~~~~~~v~Gp~GtGKT~~~~~~~~~ 57 (97)
.++.+.|.||+|+||||++..++..
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCChHHHHHHHHhCC
Confidence 3678999999999999998877654
No 426
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.26 E-value=0.00022 Score=51.53 Aligned_cols=29 Identities=17% Similarity=0.271 Sum_probs=24.0
Q ss_pred cCCceEEeCCCCCchHHHHHHHHHHHHhc
Q psy16285 33 TREFAIIQGPPGTGKTYVALRIVEGFLKN 61 (97)
Q Consensus 33 ~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~ 61 (97)
++..+.|.|++|+||||++..++..+...
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~ 396 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLMEM 396 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHTT
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhccc
Confidence 35678999999999999999888877543
No 427
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.25 E-value=0.00014 Score=49.62 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=21.4
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHH
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
+..+.|.||+|+||||++..++..+
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999988887664
No 428
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=97.24 E-value=0.00048 Score=46.87 Aligned_cols=34 Identities=21% Similarity=0.295 Sum_probs=28.9
Q ss_pred ceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEe
Q psy16285 36 FAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVC 76 (97)
Q Consensus 36 ~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~ 76 (97)
.+++.|..|+||||++..++..+.+. +++++++.
T Consensus 28 i~v~sgKGGvGKTTvA~~LA~~lA~~-------G~rVLlvD 61 (349)
T 3ug7_A 28 YIMFGGKGGVGKTTMSAATGVYLAEK-------GLKVVIVS 61 (349)
T ss_dssp EEEEECSSSTTHHHHHHHHHHHHHHS-------SCCEEEEE
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHHC-------CCeEEEEe
Confidence 56778999999999999999988766 77888777
No 429
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=97.23 E-value=0.00046 Score=46.39 Aligned_cols=35 Identities=23% Similarity=0.364 Sum_probs=29.4
Q ss_pred ceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeC
Q psy16285 36 FAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCY 77 (97)
Q Consensus 36 ~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~ 77 (97)
.+++.|..|+||||++..++..+.+. +++++++..
T Consensus 16 i~v~sgKGGvGKTTvA~~LA~~lA~~-------G~rVLlvD~ 50 (324)
T 3zq6_A 16 FVFIGGKGGVGKTTISAATALWMARS-------GKKTLVIST 50 (324)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT-------TCCEEEEEC
T ss_pred EEEEeCCCCchHHHHHHHHHHHHHHC-------CCcEEEEeC
Confidence 56778999999999999999988766 778887764
No 430
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=97.21 E-value=0.00019 Score=47.45 Aligned_cols=20 Identities=35% Similarity=0.486 Sum_probs=18.0
Q ss_pred ceEEeCCCCCchHHHHHHHH
Q psy16285 36 FAIIQGPPGTGKTYVALRIV 55 (97)
Q Consensus 36 ~~~v~Gp~GtGKT~~~~~~~ 55 (97)
.+.|.|++|+||||++..+.
T Consensus 77 iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999988876
No 431
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.21 E-value=0.00017 Score=48.12 Aligned_cols=25 Identities=24% Similarity=0.481 Sum_probs=20.8
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHH
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
++.+.|.||.|+||||++..++..+
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 5678999999999999988776544
No 432
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=97.20 E-value=0.00054 Score=44.14 Aligned_cols=27 Identities=26% Similarity=0.335 Sum_probs=23.7
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHHHh
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGFLK 60 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~~~ 60 (97)
+..+++.|++|+||||++..+...+..
T Consensus 21 ~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 447788999999999999999988866
No 433
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=97.20 E-value=0.00029 Score=44.27 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=19.6
Q ss_pred CceEEeCCCCCchHHHHHHHHHH
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEG 57 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~ 57 (97)
..+.|.|++|+|||+++..+...
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~ 26 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASE 26 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46889999999999998887654
No 434
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.19 E-value=0.00012 Score=50.21 Aligned_cols=25 Identities=36% Similarity=0.287 Sum_probs=21.0
Q ss_pred cCCceEEeCCCCCchHHHHHHHHHH
Q psy16285 33 TREFAIIQGPPGTGKTYVALRIVEG 57 (97)
Q Consensus 33 ~~~~~~v~Gp~GtGKT~~~~~~~~~ 57 (97)
.++.+.|.||+|+||||++..++..
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3678999999999999998877654
No 435
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.19 E-value=0.00027 Score=43.76 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=19.1
Q ss_pred ceEEeCCCCCchHHHHHHHHHH
Q psy16285 36 FAIIQGPPGTGKTYVALRIVEG 57 (97)
Q Consensus 36 ~~~v~Gp~GtGKT~~~~~~~~~ 57 (97)
.++|.|++|+|||+++..++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5789999999999998888764
No 436
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=97.19 E-value=0.00082 Score=47.78 Aligned_cols=29 Identities=17% Similarity=0.251 Sum_probs=25.1
Q ss_pred cCCceEEeCCCCCchHHHHHHHHHHHHhc
Q psy16285 33 TREFAIIQGPPGTGKTYVALRIVEGFLKN 61 (97)
Q Consensus 33 ~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~ 61 (97)
+++..++.||+|+|||+++..++.....+
T Consensus 150 kGq~~~i~G~sGvGKTtL~~~l~~~~~~~ 178 (473)
T 1sky_E 150 KGGKIGLFGGAGVGKTVLIQELIHNIAQE 178 (473)
T ss_dssp TTCEEEEECCSSSCHHHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCccHHHHHHHhhhhhc
Confidence 57899999999999999999988776554
No 437
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=97.18 E-value=0.00073 Score=44.45 Aligned_cols=35 Identities=26% Similarity=0.419 Sum_probs=27.7
Q ss_pred CceEEeCC-CCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEe
Q psy16285 35 EFAIIQGP-PGTGKTYVALRIVEGFLKNKELARYMSGPILIVC 76 (97)
Q Consensus 35 ~~~~v~Gp-~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~ 76 (97)
+.++|.++ +|.|||+++..++..+.+. +++++++-
T Consensus 83 kvI~vts~kgG~GKTt~a~nLA~~lA~~-------G~rVLLID 118 (271)
T 3bfv_A 83 QSIVITSEAPGAGKSTIAANLAVAYAQA-------GYKTLIVD 118 (271)
T ss_dssp CEEEEECSSTTSSHHHHHHHHHHHHHHT-------TCCEEEEE
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhC-------CCeEEEEe
Confidence 35667765 7999999999999988765 77888764
No 438
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.18 E-value=0.00028 Score=48.67 Aligned_cols=24 Identities=17% Similarity=0.216 Sum_probs=20.3
Q ss_pred cCCceEEeCCCCCchHHHHHHHHH
Q psy16285 33 TREFAIIQGPPGTGKTYVALRIVE 56 (97)
Q Consensus 33 ~~~~~~v~Gp~GtGKT~~~~~~~~ 56 (97)
.++.+.|.||+|+||||++..+..
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEEcCCCchHHHHHHHHhc
Confidence 367899999999999999777654
No 439
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.17 E-value=0.00044 Score=46.35 Aligned_cols=24 Identities=21% Similarity=0.083 Sum_probs=20.9
Q ss_pred CceEEeCCCCCchHHHHHHHHHHH
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
+.+++.||||+|||+++..++..+
T Consensus 19 ~~~Lf~Gp~G~GKtt~a~~la~~~ 42 (305)
T 2gno_A 19 ISILINGEDLSYPREVSLELPEYV 42 (305)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHhC
Confidence 468999999999999999988753
No 440
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=97.17 E-value=0.0014 Score=41.14 Aligned_cols=33 Identities=15% Similarity=0.232 Sum_probs=26.3
Q ss_pred eEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEe
Q psy16285 37 AIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVC 76 (97)
Q Consensus 37 ~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~ 76 (97)
+++.|+-|+||||.+..+...+... +.+++++.
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~-------g~~v~~tr 35 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKR-------GKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHT-------TCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC-------CCcEEEEE
Confidence 5688999999999999888888665 55665554
No 441
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.16 E-value=0.00048 Score=45.91 Aligned_cols=27 Identities=22% Similarity=0.309 Sum_probs=22.0
Q ss_pred HHhcCCceEEeCCCCCchHHHHHHHHH
Q psy16285 30 AALTREFAIIQGPPGTGKTYVALRIVE 56 (97)
Q Consensus 30 ~~~~~~~~~v~Gp~GtGKT~~~~~~~~ 56 (97)
.+..+..+.+.||+|+||||++..++.
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHST
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhcc
Confidence 334577889999999999999887754
No 442
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=97.16 E-value=0.00069 Score=45.15 Aligned_cols=35 Identities=23% Similarity=0.492 Sum_probs=28.2
Q ss_pred CceEEeCC-CCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEe
Q psy16285 35 EFAIIQGP-PGTGKTYVALRIVEGFLKNKELARYMSGPILIVC 76 (97)
Q Consensus 35 ~~~~v~Gp-~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~ 76 (97)
+.++|+++ +|.|||+++..++..+.+. +++|+++-
T Consensus 105 kvI~vts~kgG~GKTtva~nLA~~lA~~-------G~rVLLID 140 (299)
T 3cio_A 105 NILMITGATPDSGKTFVSSTLAAVIAQS-------DQKVLFID 140 (299)
T ss_dssp CEEEEEESSSSSCHHHHHHHHHHHHHHT-------TCCEEEEE
T ss_pred eEEEEECCCCCCChHHHHHHHHHHHHhC-------CCcEEEEE
Confidence 45667776 7999999999999988765 77888874
No 443
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.14 E-value=0.00029 Score=43.52 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=19.7
Q ss_pred ceEEeCCCCCchHHHHHHHHHHH
Q psy16285 36 FAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 36 ~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
.++|.|++|+|||+++..++...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 57899999999999988887643
No 444
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.14 E-value=0.00069 Score=42.42 Aligned_cols=25 Identities=32% Similarity=0.396 Sum_probs=21.9
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHH
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
...+++.|++|+|||+++..++..+
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999888775
No 445
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=97.13 E-value=0.00039 Score=45.07 Aligned_cols=24 Identities=42% Similarity=0.470 Sum_probs=20.1
Q ss_pred CceEEeCCCCCchHHHHHHHHHHH
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
-.+-|.||||+||||.+..++..+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 467899999999999988886644
No 446
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=97.12 E-value=0.0004 Score=44.49 Aligned_cols=25 Identities=24% Similarity=0.306 Sum_probs=22.3
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHH
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
+..+++.|++|+||||.+..+...+
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l 29 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKL 29 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5678999999999999999988877
No 447
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=97.11 E-value=0.00043 Score=43.98 Aligned_cols=33 Identities=27% Similarity=0.327 Sum_probs=27.2
Q ss_pred eEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEe
Q psy16285 37 AIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVC 76 (97)
Q Consensus 37 ~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~ 76 (97)
+.|.|..|+||||++..++..+.+. +.+++++-
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~-------g~~VlliD 35 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASD-------YDKIYAVD 35 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTT-------CSCEEEEE
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHC-------CCeEEEEe
Confidence 4458999999999999999988765 67887764
No 448
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.11 E-value=0.00018 Score=48.43 Aligned_cols=25 Identities=20% Similarity=0.397 Sum_probs=20.8
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHH
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
++.+.|.||+|+||||++..++..+
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCEEEEECCCCchHHHHHHHHHcCC
Confidence 6789999999999999987775443
No 449
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=97.10 E-value=0.00078 Score=43.79 Aligned_cols=38 Identities=26% Similarity=0.375 Sum_probs=31.3
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCC
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYT 78 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~ 78 (97)
+...+++||.|+|||+.+..++...... +++++++.|.
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~-------g~kvli~kp~ 56 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIA-------QYKCLVIKYA 56 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTT-------TCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHC-------CCeEEEEeec
Confidence 4567889999999999988888877655 7888888874
No 450
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=97.10 E-value=0.00069 Score=49.69 Aligned_cols=26 Identities=27% Similarity=0.394 Sum_probs=22.6
Q ss_pred ceEEeCCCCCchHHHHHHHHHHHHhc
Q psy16285 36 FAIIQGPPGTGKTYVALRIVEGFLKN 61 (97)
Q Consensus 36 ~~~v~Gp~GtGKT~~~~~~~~~~~~~ 61 (97)
.+++.|.+|+||||++..+...+...
T Consensus 54 lIvLtGlsGSGKSTlAr~La~~L~~~ 79 (630)
T 1x6v_B 54 TVWLTGLSGAGKTTVSMALEEYLVCH 79 (630)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 58899999999999999998887543
No 451
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=97.10 E-value=0.001 Score=42.10 Aligned_cols=24 Identities=33% Similarity=0.610 Sum_probs=20.9
Q ss_pred CceEEeCCCCCchHHHHHHHHHHH
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
..+++.|+.|+||||.+..+...+
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L 26 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRL 26 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHHH
Confidence 457889999999999988888877
No 452
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.10 E-value=0.00038 Score=47.50 Aligned_cols=33 Identities=24% Similarity=0.183 Sum_probs=25.9
Q ss_pred HHHHHHh---cCCceEEeCCCCCchHHHHHHHHHHH
Q psy16285 26 EAYKAAL---TREFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 26 ~~i~~~~---~~~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
.+++..+ +++.+.|.||+|+||||++..++...
T Consensus 60 ~ald~ll~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 60 RAIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp HHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEeeeeecCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4566554 47899999999999999977776654
No 453
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.09 E-value=0.0016 Score=45.78 Aligned_cols=25 Identities=24% Similarity=0.498 Sum_probs=21.9
Q ss_pred ceEEeCCCCCchHHHHHHHHHHHHh
Q psy16285 36 FAIIQGPPGTGKTYVALRIVEGFLK 60 (97)
Q Consensus 36 ~~~v~Gp~GtGKT~~~~~~~~~~~~ 60 (97)
.+++.|.||+||||++..++..+..
T Consensus 41 ~IvlvGlpGsGKSTia~~La~~l~~ 65 (469)
T 1bif_A 41 LIVMVGLPARGKTYISKKLTRYLNF 65 (469)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhc
Confidence 6789999999999999999887653
No 454
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=97.09 E-value=0.00087 Score=45.19 Aligned_cols=36 Identities=19% Similarity=0.363 Sum_probs=29.4
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEe
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVC 76 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~ 76 (97)
...+++.|..|.||||++..++..+.+. +++++++.
T Consensus 19 ~~i~v~sgkGGvGKTTva~~LA~~lA~~-------G~rVllvD 54 (329)
T 2woo_A 19 LKWIFVGGKGGVGKTTTSCSLAIQMSKV-------RSSVLLIS 54 (329)
T ss_dssp CCEEEEECSSSSSHHHHHHHHHHHHHTS-------SSCEEEEE
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHC-------CCeEEEEE
Confidence 3466788999999999999999888765 67787764
No 455
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=97.09 E-value=0.00043 Score=40.87 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=18.8
Q ss_pred ceEEeCCCCCchHHHHHHHHHH
Q psy16285 36 FAIIQGPPGTGKTYVALRIVEG 57 (97)
Q Consensus 36 ~~~v~Gp~GtGKT~~~~~~~~~ 57 (97)
.+++.|++|+|||+++..+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999998887643
No 456
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.08 E-value=0.00061 Score=47.62 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=19.4
Q ss_pred ceEEeCCCCCchHHHHHHHHHH
Q psy16285 36 FAIIQGPPGTGKTYVALRIVEG 57 (97)
Q Consensus 36 ~~~v~Gp~GtGKT~~~~~~~~~ 57 (97)
.+.|.||+|+||||++..++..
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 7899999999999998887653
No 457
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=97.08 E-value=0.00085 Score=44.40 Aligned_cols=35 Identities=17% Similarity=0.245 Sum_probs=28.6
Q ss_pred CceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEe
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVC 76 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~ 76 (97)
+.+.|.|-.|+||||++..++..+.+. +++|+++-
T Consensus 42 ~vI~v~~KGGvGKTT~a~nLA~~La~~-------G~~VlliD 76 (307)
T 3end_A 42 KVFAVYGKGGIGKSTTSSNLSAAFSIL-------GKRVLQIG 76 (307)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHT-------TCCEEEEE
T ss_pred eEEEEECCCCccHHHHHHHHHHHHHHC-------CCeEEEEe
Confidence 356666999999999999999998776 67777764
No 458
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=97.08 E-value=0.0008 Score=45.69 Aligned_cols=36 Identities=19% Similarity=0.346 Sum_probs=30.0
Q ss_pred CceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeC
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCY 77 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~ 77 (97)
..+++.|..|+||||++..++..+.+. +++++++..
T Consensus 17 ~i~~~sgkGGvGKTt~a~~lA~~la~~-------g~~vllid~ 52 (334)
T 3iqw_A 17 RWIFVGGKGGVGKTTTSCSLAIQLAKV-------RRSVLLLST 52 (334)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHTTS-------SSCEEEEEC
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHhC-------CCcEEEEEC
Confidence 567889999999999999999888665 677877764
No 459
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=97.06 E-value=0.00037 Score=43.60 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=19.8
Q ss_pred CCceEEeCCCCCchHHHHHHHHH
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVE 56 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~ 56 (97)
+.-+++.|++|+|||+++..++.
T Consensus 16 G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 34679999999999999888876
No 460
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=97.06 E-value=0.0005 Score=47.07 Aligned_cols=27 Identities=22% Similarity=0.458 Sum_probs=22.1
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHHHh
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGFLK 60 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~~~ 60 (97)
.+..+|.||+|+|||+++-++...+..
T Consensus 23 ~g~~~i~G~NGaGKTTll~ai~~al~g 49 (365)
T 3qf7_A 23 SGITVVEGPNGAGKSSLFEAISFALFG 49 (365)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHS
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 347789999999999998888766653
No 461
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.06 E-value=0.00084 Score=42.18 Aligned_cols=26 Identities=19% Similarity=0.318 Sum_probs=22.2
Q ss_pred CceEEeCCCCCchHHHHHHHHHHHHh
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGFLK 60 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~~~ 60 (97)
..++|.|.+|+|||+++..++.....
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~~~ 64 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNLKD 64 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 46789999999999999999887643
No 462
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=97.06 E-value=0.00028 Score=45.28 Aligned_cols=24 Identities=17% Similarity=0.235 Sum_probs=20.9
Q ss_pred CceEEeCCCCCchHHHHHHHHHHH
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
..+++.|++|+||||++..+...+
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHc
Confidence 357899999999999998888776
No 463
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=97.05 E-value=0.0017 Score=45.46 Aligned_cols=40 Identities=23% Similarity=0.304 Sum_probs=31.1
Q ss_pred HHHHHHHHHHh---cCCceEEeCCCCCchHHHHHHHHHHHHhc
Q psy16285 22 TIQFEAYKAAL---TREFAIIQGPPGTGKTYVALRIVEGFLKN 61 (97)
Q Consensus 22 ~~Q~~~i~~~~---~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~ 61 (97)
+.-..+|+... +++...|.||+|+|||+++..++..+..+
T Consensus 160 ~tGiraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~ 202 (427)
T 3l0o_A 160 IYSTRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAEN 202 (427)
T ss_dssp CHHHHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred hccchhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhc
Confidence 34455666655 47899999999999999998888877653
No 464
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=97.04 E-value=0.001 Score=42.88 Aligned_cols=40 Identities=13% Similarity=0.047 Sum_probs=30.5
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeCChH
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNH 80 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~~~~ 80 (97)
+...+++||-|+|||+.+...+..+... +.+++++.|...
T Consensus 28 G~I~vitG~M~sGKTT~Llr~~~r~~~~-------g~kvli~kp~~D 67 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRRLRRGIYA-------KQKVVVFKPAID 67 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHT-------TCCEEEEEEC--
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHc-------CCceEEEEeccC
Confidence 4577999999999999777777666554 678999988543
No 465
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.04 E-value=0.0005 Score=40.59 Aligned_cols=22 Identities=27% Similarity=0.593 Sum_probs=18.6
Q ss_pred ceEEeCCCCCchHHHHHHHHHH
Q psy16285 36 FAIIQGPPGTGKTYVALRIVEG 57 (97)
Q Consensus 36 ~~~v~Gp~GtGKT~~~~~~~~~ 57 (97)
.+++.|++|+|||+++..+...
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5799999999999998777643
No 466
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.04 E-value=0.00044 Score=41.52 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=18.8
Q ss_pred CceEEeCCCCCchHHHHHHHHH
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVE 56 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~ 56 (97)
..+++.|++|+|||+++..+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 3578999999999999888764
No 467
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.03 E-value=0.0005 Score=40.80 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=19.1
Q ss_pred ceEEeCCCCCchHHHHHHHHHH
Q psy16285 36 FAIIQGPPGTGKTYVALRIVEG 57 (97)
Q Consensus 36 ~~~v~Gp~GtGKT~~~~~~~~~ 57 (97)
.+++.|++|+|||+++..+...
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6789999999999998887653
No 468
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.03 E-value=0.0005 Score=43.34 Aligned_cols=27 Identities=26% Similarity=0.411 Sum_probs=22.4
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHHHh
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGFLK 60 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~~~ 60 (97)
.+..+|.||.|+|||+++-++...+..
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 457899999999999998888766654
No 469
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=97.02 E-value=0.0015 Score=47.07 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=22.6
Q ss_pred CceEEeCCCCCchHHHHHHHHHHHHhc
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGFLKN 61 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~~~~ 61 (97)
..+++.|++|+||||++..+...+...
T Consensus 373 ~~I~l~G~~GsGKSTia~~La~~L~~~ 399 (546)
T 2gks_A 373 FCVWLTGLPCAGKSTIAEILATMLQAR 399 (546)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred eEEEccCCCCCCHHHHHHHHHHHhhhc
Confidence 367889999999999999988877554
No 470
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.02 E-value=0.00058 Score=42.64 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=20.7
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHH
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
...+++.|++|+|||+++..+....
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3578999999999999988876543
No 471
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.99 E-value=0.00049 Score=40.52 Aligned_cols=22 Identities=18% Similarity=0.545 Sum_probs=18.8
Q ss_pred ceEEeCCCCCchHHHHHHHHHH
Q psy16285 36 FAIIQGPPGTGKTYVALRIVEG 57 (97)
Q Consensus 36 ~~~v~Gp~GtGKT~~~~~~~~~ 57 (97)
.+++.|++|+|||+++..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5789999999999998877643
No 472
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=96.99 E-value=0.0011 Score=45.19 Aligned_cols=37 Identities=16% Similarity=0.304 Sum_probs=30.1
Q ss_pred CceEEeCCCCCchHHHHHHHHHHHHh-chhhhhcCCCCEEEEeC
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGFLK-NKELARYMSGPILIVCY 77 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~~~-~~~~~~~~~~~ilv~~~ 77 (97)
..+++.|..|+||||++..++..+.. . .+++++++..
T Consensus 19 ~i~~~~gkGGvGKTt~a~~lA~~la~~~------~g~~vllid~ 56 (348)
T 3io3_A 19 KWIFVGGKGGVGKTTTSSSVAVQLALAQ------PNEQFLLIST 56 (348)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHHC------TTSCEEEEEC
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhc------CCCeEEEEEC
Confidence 57788999999999999999988872 3 2778877764
No 473
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.99 E-value=0.00053 Score=48.19 Aligned_cols=33 Identities=18% Similarity=0.081 Sum_probs=25.3
Q ss_pred HHHHHHh---cCCceEEeCCCCCchHHHHHHHHHHH
Q psy16285 26 EAYKAAL---TREFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 26 ~~i~~~~---~~~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
.+++.++ +++.+.|.||+|+||||++..++...
T Consensus 146 ~vld~vl~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 146 RAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp HHHHHHSCCBTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred eEEeeeEEecCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 3555544 46799999999999999977776654
No 474
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.99 E-value=0.00056 Score=41.78 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=19.5
Q ss_pred CceEEeCCCCCchHHHHHHHHHH
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEG 57 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~ 57 (97)
..+++.|++|+|||+++..+...
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 37899999999999998887643
No 475
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.97 E-value=0.00061 Score=40.88 Aligned_cols=21 Identities=33% Similarity=0.441 Sum_probs=18.5
Q ss_pred ceEEeCCCCCchHHHHHHHHH
Q psy16285 36 FAIIQGPPGTGKTYVALRIVE 56 (97)
Q Consensus 36 ~~~v~Gp~GtGKT~~~~~~~~ 56 (97)
.+++.|++|+|||+++..+..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999888764
No 476
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.97 E-value=0.0006 Score=40.44 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=18.7
Q ss_pred ceEEeCCCCCchHHHHHHHHHH
Q psy16285 36 FAIIQGPPGTGKTYVALRIVEG 57 (97)
Q Consensus 36 ~~~v~Gp~GtGKT~~~~~~~~~ 57 (97)
.+++.|++|+|||+++..+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999998877643
No 477
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.97 E-value=0.00043 Score=42.31 Aligned_cols=21 Identities=29% Similarity=0.491 Sum_probs=18.5
Q ss_pred ceEEeCCCCCchHHHHHHHHH
Q psy16285 36 FAIIQGPPGTGKTYVALRIVE 56 (97)
Q Consensus 36 ~~~v~Gp~GtGKT~~~~~~~~ 56 (97)
.++|.|++|+|||+++..++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999888765
No 478
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=96.96 E-value=0.003 Score=41.47 Aligned_cols=35 Identities=20% Similarity=0.109 Sum_probs=27.0
Q ss_pred CCceEEe---CCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEE
Q psy16285 34 REFAIIQ---GPPGTGKTYVALRIVEGFLKNKELARYMSGPILIV 75 (97)
Q Consensus 34 ~~~~~v~---Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~ 75 (97)
++.+.|. +..|+||||++..++..+.+. +.+++++
T Consensus 34 ~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~-------G~rVlli 71 (298)
T 2oze_A 34 NEAIVILNNYFKGGVGKSKLSTMFAYLTDKL-------NLKVLMI 71 (298)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHHHHHT-------TCCEEEE
T ss_pred CcEEEEEeccCCCCchHHHHHHHHHHHHHhC-------CCeEEEE
Confidence 4555555 488999999999999888655 6788775
No 479
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.96 E-value=0.00043 Score=50.00 Aligned_cols=26 Identities=19% Similarity=0.307 Sum_probs=21.7
Q ss_pred cCCceEEeCCCCCchHHHHHHHHHHH
Q psy16285 33 TREFAIIQGPPGTGKTYVALRIVEGF 58 (97)
Q Consensus 33 ~~~~~~v~Gp~GtGKT~~~~~~~~~~ 58 (97)
.++.+.|.||+|+||||++..+....
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 36789999999999999988776544
No 480
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.95 E-value=0.00064 Score=40.15 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=18.3
Q ss_pred ceEEeCCCCCchHHHHHHHHH
Q psy16285 36 FAIIQGPPGTGKTYVALRIVE 56 (97)
Q Consensus 36 ~~~v~Gp~GtGKT~~~~~~~~ 56 (97)
.+++.|++|+|||+++..+..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 678999999999999877764
No 481
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.95 E-value=0.00065 Score=40.80 Aligned_cols=23 Identities=39% Similarity=0.455 Sum_probs=19.4
Q ss_pred CceEEeCCCCCchHHHHHHHHHH
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEG 57 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~ 57 (97)
-.++|.|++|+|||+++..+...
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999998877653
No 482
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.94 E-value=0.00068 Score=40.26 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=19.0
Q ss_pred ceEEeCCCCCchHHHHHHHHHH
Q psy16285 36 FAIIQGPPGTGKTYVALRIVEG 57 (97)
Q Consensus 36 ~~~v~Gp~GtGKT~~~~~~~~~ 57 (97)
.+++.|++|+|||+++..+...
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999998887654
No 483
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=96.94 E-value=0.0013 Score=42.50 Aligned_cols=32 Identities=25% Similarity=0.423 Sum_probs=26.1
Q ss_pred eEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEE
Q psy16285 37 AIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIV 75 (97)
Q Consensus 37 ~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~ 75 (97)
+.|.|..|+||||++..++..+.+. +.+++++
T Consensus 4 I~vs~KGGvGKTT~a~nLA~~la~~-------G~~Vlli 35 (269)
T 1cp2_A 4 VAIYGKGGIGKSTTTQNLTSGLHAM-------GKTIMVV 35 (269)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHTT-------TCCEEEE
T ss_pred EEEecCCCCcHHHHHHHHHHHHHHC-------CCcEEEE
Confidence 4457899999999999999988765 6777775
No 484
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.94 E-value=0.0017 Score=46.57 Aligned_cols=28 Identities=14% Similarity=0.292 Sum_probs=24.2
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHHHhc
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGFLKN 61 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~~~~ 61 (97)
.+.++|.|+||+|||+++..++..++..
T Consensus 167 ~pHlLIaG~TGSGKSt~L~~li~sLl~~ 194 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGVNAMILSMLYK 194 (512)
T ss_dssp SCSEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 4789999999999999999998776654
No 485
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=96.93 E-value=0.0014 Score=42.95 Aligned_cols=32 Identities=25% Similarity=0.414 Sum_probs=26.2
Q ss_pred eEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEE
Q psy16285 37 AIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIV 75 (97)
Q Consensus 37 ~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~ 75 (97)
+.|.|..|+||||++..++..+.+. +.+++++
T Consensus 5 Iavs~KGGvGKTT~a~nLA~~La~~-------G~rVlli 36 (289)
T 2afh_E 5 CAIYGKGGIGKSTTTQNLVAALAEM-------GKKVMIV 36 (289)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHT-------TCCEEEE
T ss_pred EEEeCCCcCcHHHHHHHHHHHHHHC-------CCeEEEE
Confidence 4457899999999999999988765 6677765
No 486
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.92 E-value=0.00061 Score=40.49 Aligned_cols=21 Identities=33% Similarity=0.610 Sum_probs=18.2
Q ss_pred ceEEeCCCCCchHHHHHHHHH
Q psy16285 36 FAIIQGPPGTGKTYVALRIVE 56 (97)
Q Consensus 36 ~~~v~Gp~GtGKT~~~~~~~~ 56 (97)
.++|.|++|+|||+++..+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 578999999999999887763
No 487
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.92 E-value=0.00066 Score=40.59 Aligned_cols=21 Identities=33% Similarity=0.507 Sum_probs=18.3
Q ss_pred ceEEeCCCCCchHHHHHHHHH
Q psy16285 36 FAIIQGPPGTGKTYVALRIVE 56 (97)
Q Consensus 36 ~~~v~Gp~GtGKT~~~~~~~~ 56 (97)
.+++.|++|+|||+++..+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCccHHHHHHHHhc
Confidence 689999999999999887753
No 488
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=96.92 E-value=0.0018 Score=40.70 Aligned_cols=34 Identities=12% Similarity=0.015 Sum_probs=26.4
Q ss_pred eEEeC-CCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEeC
Q psy16285 37 AIIQG-PPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCY 77 (97)
Q Consensus 37 ~~v~G-p~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~~ 77 (97)
+.|.+ -+|+|||+++..++..+.+. +.+++++=|
T Consensus 4 I~v~s~kgGvGKTt~a~nLa~~la~~-------G~rVll~dp 38 (224)
T 1byi_A 4 YFVTGTDTEVGKTVASCALLQAAKAA-------GYRTAGYKP 38 (224)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHHHHT-------TCCEEEECS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-------CCCEEEEcc
Confidence 44444 58999999999999988766 678887643
No 489
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.92 E-value=0.00073 Score=40.20 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=18.8
Q ss_pred ceEEeCCCCCchHHHHHHHHHH
Q psy16285 36 FAIIQGPPGTGKTYVALRIVEG 57 (97)
Q Consensus 36 ~~~v~Gp~GtGKT~~~~~~~~~ 57 (97)
.++|.|++|+|||+++..+...
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999998777643
No 490
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.92 E-value=0.00067 Score=40.29 Aligned_cols=21 Identities=33% Similarity=0.542 Sum_probs=18.3
Q ss_pred ceEEeCCCCCchHHHHHHHHH
Q psy16285 36 FAIIQGPPGTGKTYVALRIVE 56 (97)
Q Consensus 36 ~~~v~Gp~GtGKT~~~~~~~~ 56 (97)
.+++.|++|+|||+++..+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 578999999999999877764
No 491
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=96.91 E-value=0.0041 Score=44.33 Aligned_cols=62 Identities=10% Similarity=0.106 Sum_probs=41.4
Q ss_pred HHHHHHh---cCCceEEeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEe-CChHHHHHHHHHHHhh
Q psy16285 26 EAYKAAL---TREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVC-YTNHALDQFVEGVLKY 92 (97)
Q Consensus 26 ~~i~~~~---~~~~~~v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~-~~~~~~~~~~~~l~~~ 92 (97)
.+|+... +++...|.|++|+|||+++..++....+.. ....|++.+ .....+.++.+.+.+.
T Consensus 142 r~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~~~~-----~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 142 KVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAH-----GGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTTTTC-----SSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEEecccccccCCeeeeecCCCCChHHHHHHHHHhhHhhC-----CCEEEEEECCCcchHHHHHHHHhhhc
Confidence 4555544 578999999999999999988888764431 122233222 3566677777777654
No 492
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.91 E-value=0.00066 Score=41.25 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=19.0
Q ss_pred CceEEeCCCCCchHHHHHHHHH
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVE 56 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~ 56 (97)
..+++.|++|+|||+++..+..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 3689999999999999888764
No 493
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=96.90 E-value=0.00075 Score=45.60 Aligned_cols=27 Identities=26% Similarity=0.411 Sum_probs=22.3
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHHHh
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVEGFLK 60 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~~~~~ 60 (97)
.+..+|.||+|+|||+++-++...+..
T Consensus 23 ~~~~~i~G~NGsGKS~lleAi~~~l~~ 49 (339)
T 3qkt_A 23 EGINLIIGQNGSGKSSLLDAILVGLYW 49 (339)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 457799999999999999888766653
No 494
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.89 E-value=0.00085 Score=40.25 Aligned_cols=23 Identities=26% Similarity=0.198 Sum_probs=19.5
Q ss_pred CCceEEeCCCCCchHHHHHHHHH
Q psy16285 34 REFAIIQGPPGTGKTYVALRIVE 56 (97)
Q Consensus 34 ~~~~~v~Gp~GtGKT~~~~~~~~ 56 (97)
...+++.|++|+|||+++..+..
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45789999999999999877754
No 495
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.89 E-value=0.00072 Score=40.24 Aligned_cols=20 Identities=25% Similarity=0.341 Sum_probs=17.5
Q ss_pred ceEEeCCCCCchHHHHHHHH
Q psy16285 36 FAIIQGPPGTGKTYVALRIV 55 (97)
Q Consensus 36 ~~~v~Gp~GtGKT~~~~~~~ 55 (97)
.+++.|++|+|||+++..+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999988774
No 496
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.88 E-value=0.0008 Score=39.89 Aligned_cols=21 Identities=29% Similarity=0.515 Sum_probs=18.5
Q ss_pred ceEEeCCCCCchHHHHHHHHH
Q psy16285 36 FAIIQGPPGTGKTYVALRIVE 56 (97)
Q Consensus 36 ~~~v~Gp~GtGKT~~~~~~~~ 56 (97)
.+++.|++|+|||+++..+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 678999999999999887764
No 497
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.87 E-value=0.00082 Score=39.78 Aligned_cols=21 Identities=24% Similarity=0.525 Sum_probs=18.4
Q ss_pred ceEEeCCCCCchHHHHHHHHH
Q psy16285 36 FAIIQGPPGTGKTYVALRIVE 56 (97)
Q Consensus 36 ~~~v~Gp~GtGKT~~~~~~~~ 56 (97)
.+++.|++|+|||+++..+..
T Consensus 5 ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 578999999999999887765
No 498
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.87 E-value=0.0015 Score=40.33 Aligned_cols=31 Identities=23% Similarity=0.336 Sum_probs=24.8
Q ss_pred EeCCCCCchHHHHHHHHHHHHhchhhhhcCCCCEEEEe
Q psy16285 39 IQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVC 76 (97)
Q Consensus 39 v~Gp~GtGKT~~~~~~~~~~~~~~~~~~~~~~~ilv~~ 76 (97)
..+-.|+|||+++..++..+.+. +.+++++-
T Consensus 7 ~s~kgG~GKTt~a~~la~~la~~-------g~~vlliD 37 (206)
T 4dzz_A 7 LNPKGGSGKTTAVINIATALSRS-------GYNIAVVD 37 (206)
T ss_dssp CCSSTTSSHHHHHHHHHHHHHHT-------TCCEEEEE
T ss_pred EeCCCCccHHHHHHHHHHHHHHC-------CCeEEEEE
Confidence 34677999999999999988765 66777765
No 499
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=96.87 E-value=0.0015 Score=47.31 Aligned_cols=26 Identities=15% Similarity=0.176 Sum_probs=22.5
Q ss_pred ceEEeCCCCCchHHHHHHHHHHHHhc
Q psy16285 36 FAIIQGPPGTGKTYVALRIVEGFLKN 61 (97)
Q Consensus 36 ~~~v~Gp~GtGKT~~~~~~~~~~~~~ 61 (97)
.+++.|++|+||||++..+...+...
T Consensus 398 ~I~l~GlsGSGKSTiA~~La~~L~~~ 423 (573)
T 1m8p_A 398 TIFLTGYMNSGKDAIARALQVTLNQQ 423 (573)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHH
T ss_pred EEEeecCCCCCHHHHHHHHHHHhccc
Confidence 57899999999999999998887653
No 500
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=96.86 E-value=0.0015 Score=44.53 Aligned_cols=36 Identities=19% Similarity=0.344 Sum_probs=29.2
Q ss_pred CceEEeCCCCCchHHHHHHHHHHHH--hchhhhhcCCCCEEEEeC
Q psy16285 35 EFAIIQGPPGTGKTYVALRIVEGFL--KNKELARYMSGPILIVCY 77 (97)
Q Consensus 35 ~~~~v~Gp~GtGKT~~~~~~~~~~~--~~~~~~~~~~~~ilv~~~ 77 (97)
..+++.|-.|.|||+++..++..+- +. +++++++..
T Consensus 19 ~i~v~sgKGGvGKTTvaanLA~~lA~~~~-------G~rVLLvD~ 56 (354)
T 2woj_A 19 KWIFVGGKGGVGKTTSSCSIAIQMALSQP-------NKQFLLIST 56 (354)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHHCT-------TSCEEEEEC
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhcC-------CCeEEEEEC
Confidence 4567789999999999999999887 44 677877764
Done!