RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16285
(97 letters)
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA
degradation, allosteric REGU; HET: ADP 1PE; 2.40A
{Saccharomyces cerevisiae}
Length = 802
Score = 61.9 bits (150), Expect = 6e-13
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Query: 20 LNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTN 79
LN+ Q A L R ++IQGPPGTGKT + IV L++ IL+ +N
Sbjct: 361 LNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIV------YHLSKIHKDRILVCAPSN 414
Query: 80 HALDQFVEGVLKYTQNTL 97
A+D + +
Sbjct: 415 VAVDHLAAKLRDLGLKVV 432
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay,
zinc-finger, ATP-binding, metal-BIN UPF2, UPF1,
helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A
2iyk_A
Length = 800
Score = 59.2 bits (143), Expect = 5e-12
Identities = 31/80 (38%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 13 NVQEELGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPI 72
Q LN Q A K L R ++IQGPPGTGKT + IV LAR +GP+
Sbjct: 350 TAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIV------YHLARQGNGPV 403
Query: 73 LIVCYTNHALDQFVEGVLKY 92
L+ +N A+DQ E + +
Sbjct: 404 LVCAPSNIAVDQLTEKIHQT 423
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD,
hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A*
2gk7_A 2xzo_A* 2xzp_A
Length = 624
Score = 56.0 bits (135), Expect = 7e-11
Identities = 30/79 (37%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 19 GLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYT 78
LN Q A K L R ++IQGPPGTGKT + IV LAR +GP+L+ +
Sbjct: 180 DLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIV------YHLARQGNGPVLVCAPS 233
Query: 79 NHALDQFVEGVLKYTQNTL 97
N A+DQ E + + +
Sbjct: 234 NIAVDQLTEKIHQTGLKVV 252
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein;
HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19
c.37.1.19 PDB: 2fzl_A*
Length = 472
Score = 51.4 bits (123), Expect = 3e-09
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 10/70 (14%)
Query: 24 QFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALD 83
Q +A + L + I P G+GKT+VA+ +S P LIV T +
Sbjct: 98 QEKALERWLVDKRGCIVLPTGSGKTHVAM----------AAINELSTPTLIVVPTLALAE 147
Query: 84 QFVEGVLKYT 93
Q+ E + +
Sbjct: 148 QWKERLGIFG 157
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein,
ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus
radiodurans} PDB: 3gp8_A 3gpl_A*
Length = 574
Score = 46.6 bits (111), Expect = 1e-07
Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 7/73 (9%)
Query: 9 DLSANVQEELGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYM 68
D + + GL+ Q ++ G PGTGK+ + +LA +
Sbjct: 179 DWAVPKKARKGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVA-------DLAESL 231
Query: 69 SGPILIVCYTNHA 81
+ + T A
Sbjct: 232 GLEVGLCAPTGKA 244
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition
domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus
fulgidus} SCOP: c.37.1.19
Length = 237
Score = 44.7 bits (106), Expect = 5e-07
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 10/70 (14%)
Query: 24 QFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALD 83
Q +A + L + I P G+GKT+VA+ +S P LIV T +
Sbjct: 98 QEKALERWLVDKRGCIVLPTGSGKTHVAMAA----------INELSTPTLIVVPTLALAE 147
Query: 84 QFVEGVLKYT 93
Q+ E + +
Sbjct: 148 QWKERLGIFG 157
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase,
hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli}
SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Length = 608
Score = 41.6 bits (98), Expect = 7e-06
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 24 QFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLK 60
Q A ALTR ++I G PGTGKT +++ ++
Sbjct: 154 QKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQ 190
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2
RNA helicase, ATP and dsRNA binding antiviral signalling
pathway; 3.40A {Anas platyrhynchos}
Length = 797
Score = 40.0 bits (92), Expect = 3e-05
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 16 EELGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIV 75
E + Q E + A+ + A+I P G+GKT+V++ I E +N R ++ +
Sbjct: 245 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGR--KAKVVFL 302
Query: 76 CYTNHALDQ 84
+Q
Sbjct: 303 ATKVPVYEQ 311
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain,
PIN-tower interface, coupling hydrolysis to DNA
unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Length = 459
Score = 39.2 bits (91), Expect = 5e-05
Identities = 13/58 (22%), Positives = 19/58 (32%), Gaps = 7/58 (12%)
Query: 14 VQEELG--LNTIQFEAYKAALT-----REFAIIQGPPGTGKTYVALRIVEGFLKNKEL 64
L Q A+ + + I GP GTG T + I+E + E
Sbjct: 18 GSHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGET 75
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2
RNA helicase, ATP and dsRNA binding antiviral signalling
pathway; 3.70A {Anas platyrhynchos}
Length = 936
Score = 39.2 bits (90), Expect = 6e-05
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 16 EELGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKE 63
E + Q E + A+ + A+I P G+GKT+V++ I E +N
Sbjct: 245 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP 292
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase;
1.90A {Tomato mosaic virus}
Length = 446
Score = 37.9 bits (87), Expect = 1e-04
Identities = 12/68 (17%), Positives = 20/68 (29%), Gaps = 12/68 (17%)
Query: 20 LNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTN 79
L + + + + ++ G PG GKT L V LI+
Sbjct: 147 LRRLLKDGEPHVSSAKVVLVDGVPGCGKTKEILSRVN------------FEEDLILVPGR 194
Query: 80 HALDQFVE 87
A +
Sbjct: 195 QAAEMIRR 202
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.9 bits (87), Expect = 2e-04
Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 11/78 (14%)
Query: 24 QFEAYKAALTR----EFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTN 79
+ + AL + +I G G+GKT+VAL + + ++ M I + N
Sbjct: 136 PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV----CLSYKVQCKMDFKIF---WLN 188
Query: 80 HALDQFVEGVLKYTQNTL 97
E VL+ Q L
Sbjct: 189 LKNCNSPETVLEMLQKLL 206
Score = 37.1 bits (85), Expect = 3e-04
Identities = 16/115 (13%), Positives = 37/115 (32%), Gaps = 26/115 (22%)
Query: 1 HSSILDAYDLSANV-QEELGLNTI-----QFEAY---KAALTREFAIIQGPPGTGKTYVA 51
H SI+D Y++ ++L + + + + ++
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR------MVFLD 499
Query: 52 LRIVEGFLKNKELARYMSGPIL-----IVCYTNH------ALDQFVEGVLKYTQN 95
R +E +++ A SG IL + Y + ++ V +L +
Sbjct: 500 FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPK 554
Score = 26.4 bits (57), Expect = 1.6
Identities = 17/90 (18%), Positives = 25/90 (27%), Gaps = 35/90 (38%)
Query: 5 LDAYDLSANVQEELGLNTIQFEAYKAALT-REF-AIIQGPPGTGKTYVALRIVEGFLKNK 62
D D VQ+ K+ L+ E II T + K +
Sbjct: 33 FDCKD----VQDMP----------KSILSKEEIDHIIMSKDAVSGTLRLFWTLL--SKQE 76
Query: 63 ELARYMSGPILIVCYTNHALDQFVEGVLKY 92
E+ +FVE VL+
Sbjct: 77 EMV-----------------QKFVEEVLRI 89
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate
immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Length = 696
Score = 36.5 bits (83), Expect = 5e-04
Identities = 17/48 (35%), Positives = 22/48 (45%)
Query: 13 NVQEELGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLK 60
N+ Q E A+ + II P G GKT+V+L I E LK
Sbjct: 7 NLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLK 54
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H
RNA-binding helicase, innate immunity, IFIH1, S
genomics; 1.60A {Homo sapiens}
Length = 216
Score = 35.9 bits (83), Expect = 6e-04
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 24 QFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALD 83
Q E + AL + II P G+GKT VA+ I + L K+ A G ++++ ++
Sbjct: 38 QMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASE-PGKVIVLVNKVLLVE 96
Query: 84 Q 84
Q
Sbjct: 97 Q 97
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily
2 RNA helicase, ATP and dsRNA binding antiviral
signalling pathway; 3.00A {Anas platyrhynchos} PDB:
4a36_A*
Length = 556
Score = 36.5 bits (83), Expect = 6e-04
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 16 EELGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKE 63
E + Q E + A+ + A+I P G+GKT+V++ I E +N
Sbjct: 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP 51
>2w58_A DNAI, primosome component (helicase loader); ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.50A
{Geobacillus kaustophilus HTA426}
Length = 202
Score = 35.0 bits (81), Expect = 0.001
Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 1/71 (1%)
Query: 5 LDAYDLSANVQEELGLNTIQF-EAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKE 63
L DL+ + + + +F Y+ + + G G GKTY+ I K
Sbjct: 24 LSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNV 83
Query: 64 LARYMSGPILI 74
+ + P L
Sbjct: 84 SSLIVYVPELF 94
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus,
hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Length = 677
Score = 34.5 bits (78), Expect = 0.002
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 31 ALTREFAIIQGPPGTGKTYVALR 53
A+ R+ GP +GKTY A++
Sbjct: 152 AMQRKIIFHSGPTNSGKTYHAIQ 174
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal
helicase, DNA repair,, DNA binding protein/DNA complex;
3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2
c.37.1.19 c.37.1.19 PDB: 2p6u_A
Length = 702
Score = 34.4 bits (79), Expect = 0.003
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 20 LNTIQFEAYKAALTREFAIIQGPPGTGKTYVA-LRIVEGFLKNK 62
L Q EA + + + ++ P GKT +A + +V +K
Sbjct: 26 LFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKGG 69
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication,
DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus
furiosus} SCOP: c.37.1.19 c.37.1.19
Length = 494
Score = 34.4 bits (78), Expect = 0.003
Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 7/71 (9%)
Query: 24 QFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALD 83
Q Y +I P G GKT +A+ I + G +L++ T +
Sbjct: 14 QEVIYAKCKETN-CLIVLPTGLGKTLIAMMI------AEYRLTKYGGKVLMLAPTKPLVL 66
Query: 84 QFVEGVLKYTQ 94
Q E +
Sbjct: 67 QHAESFRRLFN 77
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase;
HET: ANP; 2.14A {Mus musculus}
Length = 555
Score = 34.1 bits (77), Expect = 0.003
Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
Query: 24 QFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALD 83
Q E A + II P G GKT+V+L I E LK + G ++ +
Sbjct: 9 QLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQ--KGKVVFFANQIPVYE 66
Query: 84 QFVEGVLKYT 93
Q +Y
Sbjct: 67 QQATVFSRYF 76
>3ec2_A DNA replication protein DNAC; helicase loader, replication
initiation factor, ATP-binding, nucleotide-binding; HET:
DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Length = 180
Score = 33.5 bits (77), Expect = 0.005
Identities = 19/93 (20%), Positives = 28/93 (30%), Gaps = 5/93 (5%)
Query: 5 LDAYDLSANVQEELGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRI-VEGFLKNKE 63
LD Y Q L F + G PG GKT++A+ + K
Sbjct: 9 LDTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI 68
Query: 64 LARYMSGPILIV----CYTNHALDQFVEGVLKY 92
+ LI +F++ VL
Sbjct: 69 RGYFFDTKDLIFRLKHLMDEGKDTKFLKTVLNS 101
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM:
PF02562, ST genomics, PSI-2, protein structure
initiative; 2.35A {Corynebacterium glutamicum atcc
13032}
Length = 208
Score = 33.3 bits (77), Expect = 0.005
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Query: 36 FAIIQGPPGTGKTYVALRIVEGFLKNKELAR 66
F + GP G+GKTY+A+ L++K+++R
Sbjct: 26 FGL--GPAGSGKTYLAMAKAVQALQSKQVSR 54
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP;
2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB:
3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A*
3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Length = 525
Score = 33.4 bits (76), Expect = 0.007
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 39 IQGPPGTGKTYVALRIVEGFLKNKELARYMSG 70
G GTGKT + R VE NKE A +
Sbjct: 286 ATGATGTGKTLLVSRFVENACANKERAILFAY 317
Score = 31.8 bits (72), Expect = 0.020
Identities = 8/34 (23%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 38 IIQGPPGTGKTYVALRIV-EGFLKNKELARYMSG 70
++ G GTGKT +++ + G ++ E +++
Sbjct: 43 LVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTF 76
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein,
calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides}
PDB: 3syk_A 3zuh_A*
Length = 309
Score = 32.8 bits (74), Expect = 0.008
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 38 IIQGPPGTGKTYVALRIVEGFLKNKELAR----YMSGPILIVCYTNH 80
G PGTGKT VAL++ + + + ++ L+ Y H
Sbjct: 71 SFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGH 117
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein
struct initiative, northeast structural genomics
consortium, NESG, function; 2.40A {Bacillus halodurans}
SCOP: c.37.1.25
Length = 189
Score = 32.2 bits (73), Expect = 0.012
Identities = 11/37 (29%), Positives = 13/37 (35%), Gaps = 10/37 (27%)
Query: 38 IIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILI 74
II GP G GK+ K LA + I
Sbjct: 6 IITGPAGVGKSTTC----------KRLAAQLDNSAYI 32
>3h1t_A Type I site-specific restriction-modification system, R
(restriction) subunit; hydrolase, restriction enzyme
HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Length = 590
Score = 32.4 bits (74), Expect = 0.013
Identities = 18/87 (20%), Positives = 26/87 (29%), Gaps = 7/87 (8%)
Query: 5 LDAYDLSANVQEELGLNTIQFEAYKAALTREF-----AIIQGPPGTGKTYVALRIVEGFL 59
LD + Q A A+ ++I GTGKT VA +I
Sbjct: 164 LDTLLSPYHHVSGYSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLW 223
Query: 60 KNKELARYMSGP--ILIVCYTNHALDQ 84
+ IL + N +D
Sbjct: 224 SARWNRTGDYRKPRILFLADRNVLVDD 250
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.3 bits (73), Expect = 0.015
Identities = 23/118 (19%), Positives = 38/118 (32%), Gaps = 44/118 (37%)
Query: 5 LDAYDLSANVQ-----------EELGLN------------TIQFEAYKAALTREFAIIQG 41
+D Y S Q + G + TI F K RE
Sbjct: 1633 MDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRE------ 1686
Query: 42 PPGTGKTYVAL---RIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKYTQNT 96
Y A+ IV+G LK +++ + ++ + + +G+L TQ T
Sbjct: 1687 ------NYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSE------KGLLSATQFT 1732
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 516
Score = 32.2 bits (73), Expect = 0.016
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 37 AIIQGPPGTGKTYVAL 52
A++ GPPG GKT A
Sbjct: 80 AMLYGPPGIGKTTAAH 95
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo
sapiens}
Length = 322
Score = 32.0 bits (73), Expect = 0.017
Identities = 9/11 (81%), Positives = 11/11 (100%)
Query: 41 GPPGTGKTYVA 51
GPPGTGK+Y+A
Sbjct: 52 GPPGTGKSYLA 62
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase,
ATP-binding cassette, ATP-binding, endosome, MEM
nucleotide-binding; 2.70A {Saccharomyces cerevisiae}
PDB: 3eih_A* 2rko_A 3mhv_C
Length = 322
Score = 31.9 bits (73), Expect = 0.019
Identities = 9/11 (81%), Positives = 11/11 (100%)
Query: 41 GPPGTGKTYVA 51
GPPGTGK+Y+A
Sbjct: 58 GPPGTGKSYLA 68
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 384
Score = 31.7 bits (71), Expect = 0.021
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 37 AIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTN 79
+ G GTGKT+V+ I + K + Y N
Sbjct: 48 NLFLGLTGTGKTFVSKYIFNEIEEVK--KEDEEYKDVKQAYVN 88
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural
changes, replication; 1.95A {Escherichia coli} SCOP:
c.37.1.11 PDB: 1g8y_A 1olo_A
Length = 279
Score = 31.6 bits (71), Expect = 0.021
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 32 LTREFAIIQGPPGTGKTYVALRI 54
+ + P G GK+ +AL++
Sbjct: 28 VAGTVGALVSPGGAGKSMLALQL 50
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo
sapiens}
Length = 389
Score = 31.7 bits (72), Expect = 0.022
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 41 GPPGTGKTYVA 51
GPPG GKT +A
Sbjct: 155 GPPGNGKTMLA 165
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural
genomics, APC84050.2, PS protein structure initiative;
HET: MSE; 1.82A {Neisseria meningitidis MC58}
Length = 199
Score = 31.6 bits (71), Expect = 0.023
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 38 IIQGPPGTGKTYVALRIVEGFLKNKELAR 66
+I G PG+GKT + ++ K
Sbjct: 9 LITGTPGSGKTLKMVSMMANDEMFKPDEN 37
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate
hydrolases fold, S genomics, joint center for
structural genomics, JCSG; HET: MSE; 1.70A
{Chloroflexus aurantiacus}
Length = 193
Score = 31.4 bits (71), Expect = 0.025
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 38 IIQGPPGTGKTYVALRIVEGF 58
I+ G P TGKT ++ + G
Sbjct: 9 IVTGHPATGKTTLSQALATGL 29
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural
genomics consortium, ATP- hydrolase, magnesium,
metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo
sapiens}
Length = 357
Score = 31.3 bits (71), Expect = 0.026
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 41 GPPGTGKTYVA 51
GPPGTGKT +
Sbjct: 124 GPPGTGKTLIG 134
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding,
nucleotide-binding, hydrolase; 2.70A {Drosophila
melanogaster}
Length = 297
Score = 31.1 bits (71), Expect = 0.029
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 41 GPPGTGKTYVA 51
GPPG GKT +A
Sbjct: 61 GPPGNGKTLLA 71
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure
initiative, PSI, SGPP structural genomics of pathogenic
protozoa consortium; HET: ADP; 1.70A {Leishmania major}
SCOP: c.37.1.1
Length = 184
Score = 31.2 bits (70), Expect = 0.029
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 38 IIQGPPGTGKTYVALRIVE 56
+I G PGTGKT +A I
Sbjct: 14 LITGTPGTGKTSMAEMIAA 32
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA
replication initation factor, cell cycle control
factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP:
a.4.5.11 c.37.1.20
Length = 389
Score = 31.3 bits (70), Expect = 0.031
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 37 AIIQGPPGTGKTYVALRIVE 56
A + G PGTGKT ++ E
Sbjct: 47 ATLLGRPGTGKTVTLRKLWE 66
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 386
Score = 31.2 bits (70), Expect = 0.031
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 7/43 (16%)
Query: 37 AIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTN 79
I G GTGKT V ++ +L + G V Y N
Sbjct: 48 IFIYGLTGTGKTAVVKFVL------SKLHKKFLGKFKHV-YIN 83
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA
replication, viral replication, nucleotide-binding;
2.10A {Kokobera virus} PDB: 2v6j_A
Length = 431
Score = 31.0 bits (70), Expect = 0.037
Identities = 12/47 (25%), Positives = 17/47 (36%), Gaps = 11/47 (23%)
Query: 34 REFAIIQGPPGTGK-TYVALRIV-EGFLKNKE---------LARYMS 69
RE ++ PG GK V ++V E K +A M
Sbjct: 2 RELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAPTRVVASEMY 48
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase,
nucleotide excision repair,; 2.20A {Thermoplasma
acidophilum} PDB: 2vsf_A*
Length = 620
Score = 30.8 bits (70), Expect = 0.040
Identities = 12/62 (19%), Positives = 25/62 (40%), Gaps = 6/62 (9%)
Query: 26 EAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQF 85
+ ++ P G+GKT +AL + L+ + +L + TN +Q
Sbjct: 14 FLRSSLQKSYGVALESPTGSGKTIMAL---KSALQY---SSERKLKVLYLVRTNSQEEQV 67
Query: 86 VE 87
++
Sbjct: 68 IK 69
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer
aging, hydrolase; HET: FLC; 2.00A {Sulfolobus
acidocaldarius} PDB: 3crw_1*
Length = 551
Score = 31.1 bits (70), Expect = 0.042
Identities = 9/62 (14%), Positives = 20/62 (32%), Gaps = 10/62 (16%)
Query: 26 EAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQF 85
+ + + P G+GKT +L ++ + +L V T++
Sbjct: 14 KVIEGLRNNFLVALNAPTGSGKTLFSL----------LVSLEVKPKVLFVVRTHNEFYPI 63
Query: 86 VE 87
Sbjct: 64 YR 65
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation,
exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae}
PDB: 4a4k_A
Length = 997
Score = 31.0 bits (69), Expect = 0.045
Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 20 LNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPI 72
L+T Q EA + + GKT VA + +N Y S PI
Sbjct: 40 LDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNMTKTIYTS-PI 91
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian
virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A
2h1l_A
Length = 377
Score = 30.8 bits (69), Expect = 0.046
Identities = 10/50 (20%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 19 GLNTIQFEAYKAALT----REFAIIQGPPGTGKTYVALRIVEGFLKNKEL 64
++++ ++ K + + + + +GP +GKT +A ++E K L
Sbjct: 150 KMDSVVYDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLE-LCGGKAL 198
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Length = 540
Score = 30.7 bits (69), Expect = 0.046
Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 10/62 (16%)
Query: 26 EAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQF 85
EA A + ++ PG GKT L + +LI T+ LD
Sbjct: 18 EAINALKHGKTLLLNAKPGLGKTVFVEV----------LGMQLKKKVLIFTRTHSQLDSI 67
Query: 86 VE 87
+
Sbjct: 68 YK 69
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold,
ATP-binding, hydrolase, nucleotide- binding; 2.00A
{Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Length = 720
Score = 31.0 bits (70), Expect = 0.047
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 20 LNTIQFEAYKAAL-TREFAIIQGPPGTGKTYVA-LRIVEGFLKNK 62
Q EA K+ + + A+I P +GKT +A + +V L
Sbjct: 24 FYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQG 68
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 30.4 bits (68), Expect = 0.050
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 38 IIQGPPGTGKTYVALRIVE 56
++ G PG+GK+ +A +
Sbjct: 13 LLSGHPGSGKSTIAEALAN 31
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics,
structural G consortium, SGC, ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo
sapiens}
Length = 262
Score = 30.7 bits (70), Expect = 0.050
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 37 AIIQGPPGTGKTYVA 51
A++ GPPG GKT +A
Sbjct: 42 ALLLGPPGCGKTLLA 56
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA
replication, clamp loader, AAA+ ATP ATP-binding,
nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus
fulgidus} PDB: 2chv_A
Length = 319
Score = 30.8 bits (70), Expect = 0.051
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 38 IIQGPPGTGKTYVALRIVEGFLKNKELARYM 68
+ GPPGTGKT A+ + ++
Sbjct: 42 LFSGPPGTGKTATAIALARDLFGENWRDNFI 72
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase,
HEL helix motif, transcription regulator; 3.20A
{Streptococcus pneumoniae}
Length = 253
Score = 30.6 bits (68), Expect = 0.056
Identities = 8/37 (21%), Positives = 14/37 (37%)
Query: 25 FEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKN 61
K++ ++ G G GKT + + F N
Sbjct: 23 TRGKKSSKQPIAILLGGQSGAGKTTIHRIKQKEFQGN 59
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A
{Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Length = 287
Score = 30.4 bits (67), Expect = 0.058
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 25 FEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKN 61
+ KA + ++ G PG+GKT + I E N
Sbjct: 24 IQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGN 60
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 30.4 bits (68), Expect = 0.063
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 38 IIQGPPGTGKTYVALRIVE 56
II G PG GKT + +IVE
Sbjct: 4 IITGEPGVGKTTLVKKIVE 22
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA
replication, clamp loader, AAA+ ATPase, ATP-binding,
nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus
fulgidus}
Length = 226
Score = 30.3 bits (69), Expect = 0.069
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 38 IIQGPPGTGKTYVALRIVEGFLKNKELARYM 68
+ GPPGTGKT A+ + ++
Sbjct: 42 LFSGPPGTGKTATAIALARDLFGENWRDNFI 72
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups,
carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Length = 321
Score = 30.3 bits (68), Expect = 0.072
Identities = 13/63 (20%), Positives = 20/63 (31%), Gaps = 6/63 (9%)
Query: 16 EELGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIV 75
+ L T QF I G GK+ + + L+R+ P + V
Sbjct: 74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKA------LLSRWPDHPNVEV 127
Query: 76 CYT 78
T
Sbjct: 128 ITT 130
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 30.2 bits (69), Expect = 0.074
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 8/32 (25%)
Query: 41 GPPGTGKTYV----ALRIVEG----FLKNKEL 64
G PG GKT + A RIV+G LK K +
Sbjct: 198 GEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRI 229
>2qgz_A Helicase loader, putative primosome component; structural genomics,
PSI-2, protein structure initiative; 2.40A
{Streptococcus pyogenes serotype M3}
Length = 308
Score = 30.2 bits (68), Expect = 0.076
Identities = 14/93 (15%), Positives = 33/93 (35%), Gaps = 5/93 (5%)
Query: 5 LDAYDLSANVQEELGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIV-EGFLKNKE 63
L D++ + E + F + ++ + G G GK+Y+ + E K
Sbjct: 123 LSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGV 182
Query: 64 LARYMSGPILIV----CYTNHALDQFVEGVLKY 92
+ P + +N ++ + ++ V
Sbjct: 183 STTLLHFPSFAIDVKNAISNGSVKEEIDAVKNV 215
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer,
structural genomics; HET: ADP; 2.00A {Pyrococcus
horikoshii}
Length = 247
Score = 30.0 bits (68), Expect = 0.077
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 38 IIQGPPGTGKTYVALRIVEGFLKNKELARYMSG 70
++ G PGTGKT + + + LK E Y++
Sbjct: 27 LLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET:
ADP; 3.90A {Thermus thermophilus}
Length = 499
Score = 29.9 bits (68), Expect = 0.081
Identities = 11/17 (64%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
Query: 41 GPPGTGKTYVALRIVEG 57
GPPG GKT++A R V G
Sbjct: 71 GPPGVGKTHLA-RAVAG 86
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A
{Homo sapiens}
Length = 274
Score = 29.8 bits (68), Expect = 0.081
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 41 GPPGTGKTYVA 51
GPPG GKT +A
Sbjct: 51 GPPGCGKTLLA 61
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann,
hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Length = 189
Score = 30.1 bits (67), Expect = 0.084
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 38 IIQGPPGTGKTYVALRIVE 56
+ GPPG GKT + + E
Sbjct: 5 FLTGPPGVGKTTLIHKASE 23
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A
{Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB:
2cea_A* 3kds_E*
Length = 476
Score = 29.8 bits (68), Expect = 0.091
Identities = 12/17 (70%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
Query: 41 GPPGTGKTYVALRIVEG 57
GPPGTGKT +A R V G
Sbjct: 56 GPPGTGKTLLA-RAVAG 71
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta
proteins (A/B), protein binding, transferase,
phosphotransferase; HET: ADP; 1.76A {Homo sapiens} PDB:
3iik_A 3iil_A* 3iim_A* 1rkb_A
Length = 180
Score = 29.6 bits (66), Expect = 0.099
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 38 IIQGPPGTGKTYVALRIVE 56
++ G PG GKT + +
Sbjct: 15 LLTGTPGVGKTTLGKELAS 33
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR
complex, HMR, HML, TELO AAA+ domain, structural,
nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Length = 318
Score = 29.9 bits (66), Expect = 0.10
Identities = 4/42 (9%), Positives = 12/42 (28%), Gaps = 3/42 (7%)
Query: 38 IIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTN 79
I + K + +++ + PI + +
Sbjct: 49 YITNADDSTKFQLVNDVMDEL---ITSSARKELPIFDYIHID 87
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48, ATP-binding, lipid-binding, nucle binding,
nucleus, phosphoprotein, transport; HET: ADP; 3.00A
{Mus musculus}
Length = 301
Score = 29.5 bits (67), Expect = 0.12
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 41 GPPGTGKTYVA 51
GPPG GKT +A
Sbjct: 56 GPPGCGKTLLA 66
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP,
replication; HET: ADP; 2.80A {Pyrococcus furiosus}
SCOP: a.80.1.1 c.37.1.20
Length = 327
Score = 29.6 bits (67), Expect = 0.12
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 38 IIQGPPGTGKTYVAL 52
+ GPPG GKT AL
Sbjct: 50 LFAGPPGVGKTTAAL 64
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman
fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Length = 500
Score = 29.7 bits (67), Expect = 0.12
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 30 AALTREFAIIQGPPGTGKTYVALRIVEGF 58
AAL+ E + GPPG K+ +A R+ F
Sbjct: 37 AALSGESVFLLGPPGIAKSLIARRLKFAF 65
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic
subunit]; helicase, flavivirus, DEAD-BOX, ATPase,
rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP:
c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Length = 440
Score = 29.4 bits (66), Expect = 0.12
Identities = 5/16 (31%), Positives = 7/16 (43%)
Query: 33 TREFAIIQGPPGTGKT 48
++ PG GKT
Sbjct: 7 KGMTTVLDFHPGAGKT 22
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A*
1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Length = 806
Score = 29.4 bits (66), Expect = 0.13
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 41 GPPGTGKTYVA 51
GPPG GKT +A
Sbjct: 518 GPPGCGKTLLA 528
Score = 28.6 bits (64), Expect = 0.32
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 38 IIQGPPGTGKTYVALRI 54
++ GPPGTGKT +A +
Sbjct: 242 LLYGPPGTGKTLIARAV 258
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP
phosphotransferase, myokinase, structural genomics,
structural genomics consortium, SGC; 1.48A {Homo
sapiens} PDB: 2ak3_A*
Length = 227
Score = 29.1 bits (66), Expect = 0.14
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 37 AIIQGPPGTGKTYVALRIVEGF 58
A+I G PG+GK V+ RI F
Sbjct: 10 AVIMGAPGSGKGTVSSRITTHF 31
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 6.93A {Bacillus subtilis}
Length = 758
Score = 29.5 bits (67), Expect = 0.15
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 8/32 (25%)
Query: 41 GPPGTGKTYV----ALRIVEG----FLKNKEL 64
G PG GKT + A +I+ L++K +
Sbjct: 208 GEPGVGKTAIAEGLAQQIINNEVPEILRDKRV 239
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding,
nucleotide-binding, HY; HET: ADP; 3.11A
{Methanocaldococcus jannaschii}
Length = 285
Score = 29.2 bits (66), Expect = 0.15
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 41 GPPGTGKTYVA 51
GPPGTGKT +A
Sbjct: 58 GPPGTGKTLLA 68
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase;
2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB:
1iy0_A* 1iy1_A*
Length = 254
Score = 29.2 bits (66), Expect = 0.16
Identities = 11/17 (64%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
Query: 41 GPPGTGKTYVALRIVEG 57
GPPG GKT++A R V G
Sbjct: 56 GPPGVGKTHLA-RAVAG 71
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA
translocation, nucleotide-binding, DNA-binding; 3.00A
{Bovine papillomavirus type 1} PDB: 2gxa_A*
Length = 305
Score = 29.1 bits (65), Expect = 0.16
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 38 IIQGPPGTGKTYVALRIVEGFLKNKEL 64
GPP TGK+ + ++ FL L
Sbjct: 130 AFIGPPNTGKSMLCNSLIH-FLGGSVL 155
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding,
cell CELL division, hydrolase, membrane, metal-binding;
3.30A {Helicobacter pylori} PDB: 2r65_A*
Length = 268
Score = 29.1 bits (66), Expect = 0.17
Identities = 11/17 (64%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
Query: 41 GPPGTGKTYVALRIVEG 57
GPPGTGKT +A + V G
Sbjct: 51 GPPGTGKTLLA-KAVAG 66
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase;
3.20A {Thermus thermophilus} SCOP: c.37.1.20
Length = 278
Score = 29.2 bits (66), Expect = 0.17
Identities = 11/17 (64%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
Query: 41 GPPGTGKTYVALRIVEG 57
GPPG GKT++A R V G
Sbjct: 80 GPPGVGKTHLA-RAVAG 95
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 3.65A {Bacillus subtilis}
Length = 468
Score = 29.1 bits (66), Expect = 0.19
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 8/32 (25%)
Query: 41 GPPGTGKTYV----ALRIVEG----FLKNKEL 64
G PG GKT + A +I+ L++K +
Sbjct: 208 GEPGVGKTAIAEGLAQQIINNEVPEILRDKRV 239
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding,
human, structura genomics, structural genomics
consortium, SGC, transferase; HET: GP5; 2.05A {Homo
sapiens} PDB: 2ar7_A* 3ndp_A
Length = 246
Score = 28.8 bits (65), Expect = 0.20
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 37 AIIQGPPGTGKTYVALRIVEGF 58
A+I GPPG+GK V RI + F
Sbjct: 30 AVILGPPGSGKGTVCQRIAQNF 51
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A
{Escherichia coli} SCOP: c.37.1.20
Length = 257
Score = 28.8 bits (65), Expect = 0.20
Identities = 10/17 (58%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
Query: 41 GPPGTGKTYVALRIVEG 57
GPPGTGKT +A + + G
Sbjct: 52 GPPGTGKTLLA-KAIAG 67
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase;
HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP:
c.37.1.20 PDB: 1s9h_A
Length = 267
Score = 28.8 bits (64), Expect = 0.21
Identities = 11/49 (22%), Positives = 16/49 (32%), Gaps = 7/49 (14%)
Query: 19 GLNTIQFEAY------KAALTREFAIIQGPPGTGKTYVALRIVEGFLKN 61
G + + K R + GP TGKT +A I +
Sbjct: 83 GYDPQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIA-HTVPF 130
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function;
HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Length = 251
Score = 28.7 bits (64), Expect = 0.22
Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 38 IIQGPPGTGKTYVALR-IVEGFLKNKELARYMSG 70
++ G GTGKT A + I +G + E +++
Sbjct: 34 LLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus
P2}
Length = 235
Score = 28.8 bits (65), Expect = 0.23
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 38 IIQGPPGTGKTYVALRIVEGFLKNKELARYMSG 70
+ G PGTGKT +L + L++ + Y++
Sbjct: 27 ALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT 59
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase,
hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia
coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Length = 1180
Score = 28.8 bits (64), Expect = 0.28
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Query: 44 GTGKTYV----ALRIVEGFLKNKELARYMS-GPILIVCYTNHA 81
GTGKT+ LR++ G + R ++ +L+V +T A
Sbjct: 26 GTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAA 68
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function;
HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Length = 359
Score = 28.5 bits (63), Expect = 0.29
Identities = 12/77 (15%), Positives = 23/77 (29%), Gaps = 10/77 (12%)
Query: 20 LNTIQFEAYKAALT----REFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIV 75
+ + F+ K + E + GT + + +LA+ IV
Sbjct: 101 VEDVNFQPVKYSALTSNNEECTAVVARGGTANAIRIAAVDNP-VNVNKLAQDSINIAQIV 159
Query: 76 C-----YTNHALDQFVE 87
+ LD F +
Sbjct: 160 PMDGFHLSRRCLDLFKD 176
Score = 25.0 bits (54), Expect = 5.1
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Query: 34 REFAIIQGPPGTGKTYV----ALRIVEGF 58
R I+ G PG+GK+ + I E +
Sbjct: 24 RVCVILVGSPGSGKSTIAEELCQIINEKY 52
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding
mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli}
SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Length = 758
Score = 28.4 bits (64), Expect = 0.30
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 8/32 (25%)
Query: 41 GPPGTGKTYV----ALRIVEG----FLKNKEL 64
G G GKT + A RIV+G + + +
Sbjct: 214 GESGVGKTAIAEGLAWRIVQGDVPEVMADCTI 245
Score = 25.3 bits (56), Expect = 3.7
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 10/33 (30%)
Query: 41 GPPGTGKTYVALRIVEGFLKNKELARYMSGPIL 73
GP G GKT V +L++ + +L
Sbjct: 495 GPTGVGKTEVT----------VQLSKALGIELL 517
>2jlq_A Serine protease subunit NS3; ribonucleoprotein,
nucleotide-binding, viral nucleoprotein, endoplasmic
reticulum, helicase, hydrolase; 1.67A {Dengue virus 4}
PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A*
2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Length = 451
Score = 28.7 bits (64), Expect = 0.30
Identities = 10/52 (19%), Positives = 16/52 (30%), Gaps = 15/52 (28%)
Query: 34 REFAIIQGPPGTGK-TYVALRIVEGFLKNK--------------ELARYMSG 70
+ I+ PG GK + IV L + E+ + G
Sbjct: 19 KRLTIMDLHPGAGKTKRILPSIVREALLRRLRTLILAPTRVVAAEMEEALRG 70
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold,
winged-helix-turn-helix, antiparallel-coiled-COI domain,
ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces
cerevisiae}
Length = 1108
Score = 28.7 bits (63), Expect = 0.33
Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 20 LNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPI 72
L+ Q A E ++ GKT VA + LKNK+ Y S PI
Sbjct: 185 LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTS-PI 236
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein;
HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A*
1e32_A* 1s3s_A* 2pjh_B
Length = 489
Score = 28.2 bits (63), Expect = 0.35
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 41 GPPGTGKTYVA 51
GPPGTGKT +A
Sbjct: 245 GPPGTGKTLIA 255
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic;
photosynthesis, rubisco activase, AAA+ protein; 2.95A
{Nicotiana tabacum} PDB: 3zw6_A
Length = 293
Score = 28.2 bits (63), Expect = 0.36
Identities = 5/14 (35%), Positives = 7/14 (50%)
Query: 38 IIQGPPGTGKTYVA 51
I G G GK++
Sbjct: 40 GIWGGKGQGKSFQC 53
>3pvs_A Replication-associated recombination protein A; maintenance of
genome stability Pro recombination; 2.50A {Escherichia
coli}
Length = 447
Score = 28.3 bits (64), Expect = 0.37
Identities = 9/15 (60%), Positives = 12/15 (80%), Gaps = 1/15 (6%)
Query: 41 GPPGTGKTYVALRIV 55
GPPGTGKT +A ++
Sbjct: 57 GPPGTGKTTLA-EVI 70
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase,
tramp, exosome, DEAD, nucleotide-binding; HET: ADP;
2.90A {Saccharomyces cerevisiae}
Length = 1010
Score = 28.2 bits (62), Expect = 0.46
Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 20 LNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPI 72
L+ Q A E ++ GKT VA + LKNK+ Y S PI
Sbjct: 87 LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTS-PI 138
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system
kinase, STRU genomics, joint center for structural
genomics, JCSG; 1.95A {Silicibacter SP}
Length = 208
Score = 27.8 bits (62), Expect = 0.50
Identities = 5/18 (27%), Positives = 11/18 (61%)
Query: 39 IQGPPGTGKTYVALRIVE 56
+ G PG+GK+ ++ +
Sbjct: 27 LSGAPGSGKSTLSNPLAA 44
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic
region; yeast protein, ATP binding protein; 2.25A
{Saccharomyces cerevisiae} SCOP: c.37.1.6
Length = 290
Score = 27.7 bits (60), Expect = 0.52
Identities = 9/42 (21%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 20 LNTIQFEAYKAALTREFAI-IQGPPGTGKTYVALRIVEGFLK 60
L+ E ++ I GP G+GK++ +++I ++
Sbjct: 16 LDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTSIQIYNHLME 57
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide
biosynthesis, nucleotide-BIND transferase, structural
genomics; 2.10A {Burkholderia pseudomallei 1710B}
Length = 230
Score = 27.6 bits (62), Expect = 0.52
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 37 AIIQGPPGTGKTYVALRIVEGF 58
I+ G PG GK A I E F
Sbjct: 11 LILLGAPGAGKGTQANFIKEKF 32
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding,
chromatin regulator, growth regulation, hydrolase,
nuclear protein, DNA recombination; HET: ADP; 2.2A
{Homo sapiens} PDB: 2xsz_A*
Length = 456
Score = 27.6 bits (61), Expect = 0.53
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 37 AIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGP 71
++ GPPGTGKT +AL + L +K M G
Sbjct: 66 VLLAGPPGTGKTALAL-AIAQELGSKVPFCPMVGS 99
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA
ATPase, ATP-binding, coiled coil, membrane,
nucleotide-binding, phosphorylation; HET: ATP; 3.00A
{Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A
2jq9_A 2k3w_A 1yxr_A
Length = 444
Score = 27.6 bits (61), Expect = 0.54
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 41 GPPGTGKTYVALRIVEG 57
GPPGTGK+Y+A +
Sbjct: 174 GPPGTGKSYLAKAVATE 190
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane,
nucleotide-binding, RNA replication, transmembrane,
viral protein; 1.80A {Japanese encephalitis virus} PDB:
2v8o_A 2qeq_A
Length = 459
Score = 27.9 bits (62), Expect = 0.55
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 33 TREFAIIQGPPGTGKT 48
R+ ++ PG+GKT
Sbjct: 20 KRQMTVLDLHPGSGKT 35
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural
genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Length = 263
Score = 27.7 bits (62), Expect = 0.56
Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 8/40 (20%)
Query: 35 EFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILI 74
E II GP G+GKT LR + G L SG I I
Sbjct: 31 EKVIILGPNGSGKT-TLLRAISGLLPY-------SGNIFI 62
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain,
ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus}
SCOP: c.37.1.20 PDB: 1nsf_A*
Length = 272
Score = 27.8 bits (62), Expect = 0.56
Identities = 7/13 (53%), Positives = 11/13 (84%)
Query: 39 IQGPPGTGKTYVA 51
++GPP +GKT +A
Sbjct: 69 LEGPPHSGKTALA 81
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli}
SCOP: c.37.1.20
Length = 195
Score = 27.3 bits (61), Expect = 0.60
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 8/32 (25%)
Query: 41 GPPGTGKTYV----ALRIVEG----FLKNKEL 64
G PG GKT + A RI+ G LK + +
Sbjct: 50 GEPGVGKTAIVEGLAQRIINGEVPEGLKGRRV 81
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+
protein; 2.10A {Human papillomavirus type 18} SCOP:
c.37.1.20
Length = 212
Score = 27.5 bits (61), Expect = 0.61
Identities = 7/25 (28%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 38 IIQGPPGTGKTYVALRIVEGFLKNK 62
+ GP TGK+Y + + F++
Sbjct: 62 VFCGPANTGKSYFGMSFIH-FIQGA 85
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural
genomics, structural genomics consortium, SGC, unknown
function; 1.70A {Plasmodium falciparum}
Length = 187
Score = 27.3 bits (61), Expect = 0.64
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 8/32 (25%)
Query: 41 GPPGTGKTYV----ALRIVEG----FLKNKEL 64
G PG GKT + A++IV+G LK ++L
Sbjct: 50 GDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKL 81
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI,
protein structure initiative; 1.90A {Geobacillus
stearothermophilus} SCOP: c.37.1.6
Length = 201
Score = 27.3 bits (61), Expect = 0.66
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 39 IQGPPGTGKTYVALRIVEGF 58
I G +GKT +A ++ +
Sbjct: 27 IDGLSRSGKTTLANQLSQTL 46
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding,
nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A
{Thermococcus onnurineus}
Length = 604
Score = 27.4 bits (61), Expect = 0.67
Identities = 16/81 (19%), Positives = 27/81 (33%), Gaps = 11/81 (13%)
Query: 15 QEELGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILI 74
QE + I+ AA + ++ G PGTGK+ + + E L IL+
Sbjct: 46 QEH-AVEVIKT----AANQKRHVLLIGEPGTGKSMLGQAMAE------LLPTETLEDILV 94
Query: 75 VCYTNHALDQFVEGVLKYTQN 95
++ V
Sbjct: 95 FPNPEDENMPRIKTVPACQGR 115
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein;
membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP:
c.37.1.12
Length = 240
Score = 27.1 bits (61), Expect = 0.68
Identities = 9/25 (36%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 34 REFAIIQGPPGTGKTYVALRIVEGF 58
R++ ++ GP G GK+ V L ++ G
Sbjct: 24 RDYCVLLGPTGAGKS-VFLELIAGI 47
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics
consortium, SGC, RO fold, transferase, ATP binding,
phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium
falciparum}
Length = 243
Score = 27.2 bits (61), Expect = 0.77
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 37 AIIQGPPGTGKTYVALRIVEGF 58
I G PG+GK +L + +
Sbjct: 32 YIFLGAPGSGKGTQSLNLKKSH 53
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase,
phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1
g.41.2.1 PDB: 2ak2_A 2c9y_A*
Length = 233
Score = 27.2 bits (61), Expect = 0.84
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 37 AIIQGPPGTGKTYVALRIVEGF 58
A++ GPPG GK A ++ + F
Sbjct: 19 AVLLGPPGAGKGTQAPKLAKNF 40
>1kht_A Adenylate kinase; phosphotransferase, signaling protein,
transferase; HET: AMP; 2.50A {Methanococcus voltae}
SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Length = 192
Score = 26.9 bits (59), Expect = 0.91
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 38 IIQGPPGTGKTYVALRIVEGFLKNKELARYMS 69
++ G PG G T + ++ K + +S
Sbjct: 7 VVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVS 38
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop,
rossman fold, AAA+, photosynthesis, metal transport;
2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB:
2x31_G
Length = 350
Score = 27.0 bits (60), Expect = 0.92
Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 22/52 (42%)
Query: 7 AYDLSANV-QEELGLNTIQFEAYKAALTREFA---------IIQGPPGTGKT 48
+ SA V QE++ K AL ++ G GTGK+
Sbjct: 20 VFPFSAIVGQEDM----------KLAL--LLTAVDPGIGGVLVFGDRGTGKS 59
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta
domain, C-terminal helix, ATP-binding, E
nucleotide-binding; 2.90A {Saccharomyces cerevisiae}
PDB: 2qpa_A*
Length = 355
Score = 27.1 bits (60), Expect = 0.93
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 41 GPPGTGKTYVALRI 54
GPPGTGK+Y+A +
Sbjct: 91 GPPGTGKSYLAKAV 104
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein
inhibitors, nucleotide-binding, transferase; HET: AP5;
1.60A {Cryptosporidium parvum iowa II}
Length = 217
Score = 26.7 bits (60), Expect = 0.96
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 37 AIIQGPPGTGKTYVALRIVEGF 58
I+ G PG+GK I + +
Sbjct: 8 LILIGAPGSGKGTQCEFIKKEY 29
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5;
1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB:
1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Length = 214
Score = 26.7 bits (60), Expect = 0.97
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 37 AIIQGPPGTGKTYVALRIVEGF 58
I+ G P GK A I+E +
Sbjct: 3 IILLGAPVAGKGTQAQFIMEKY 24
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase,
transferase (phosphotransferase); HET: AP5; 1.63A
{Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB:
2aky_A* 3aky_A* 1dvr_A*
Length = 220
Score = 26.7 bits (60), Expect = 1.1
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 37 AIIQGPPGTGKTYVALRIVEGF 58
++ GPPG GK A + E F
Sbjct: 7 MVLIGPPGAGKGTQAPNLQERF 28
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase;
HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Length = 368
Score = 26.8 bits (59), Expect = 1.2
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 38 IIQGPPGTGKTYVALRI 54
+I G PGTGKT +A+ +
Sbjct: 74 LIAGQPGTGKTAIAMGM 90
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta
protein., structural genomics, PSI-2, protein structure
initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB:
2axp_A*
Length = 173
Score = 26.6 bits (59), Expect = 1.2
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 38 IIQGPPGTGKTYVALRIVE 56
I++GP K+ VA ++ +
Sbjct: 5 ILEGPDCCFKSTVAAKLSK 23
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide,
hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP:
a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Length = 324
Score = 26.4 bits (59), Expect = 1.4
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 13/52 (25%)
Query: 29 KAALTREFAI----IQGPPGTGKTYVALRIVEGFLKNKELA---RYMSGPIL 73
+AA R+ + + GPPG GKT +A I EL R SGP +
Sbjct: 29 EAAKARKEPLEHLLLFGPPGLGKTTLAHVIA------HELGVNLRVTSGPAI 74
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase,
winged-helix domain, ATP hydrolysis, walker A, walker
B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga
maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A*
1in8_A* 1in7_A* 1j7k_A*
Length = 334
Score = 26.4 bits (59), Expect = 1.4
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 13/52 (25%)
Query: 29 KAALTREFAI----IQGPPGTGKTYVALRIVEGFLKNKELA---RYMSGPIL 73
+AA R + + GPPG GKT +A I EL SGP+L
Sbjct: 42 EAAKMRGEVLDHVLLAGPPGLGKTTLAHIIA------SELQTNIHVTSGPVL 87
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP
binding motif, ATP- binding, nucleotide-binding,
transferase; HET: ADP; 1.79A {Methanocaldococcus
jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A*
3adb_A*
Length = 260
Score = 26.4 bits (58), Expect = 1.4
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 38 IIQGPPGTGKTYVALRIVEGFLKNKELARYMSG 70
I+ G PG GK+ + + + KN +
Sbjct: 8 ILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGS 40
>3eeq_A Putative cobalamin biosynthesis protein G homolog; structural
genomics, unknown function, PSI-2, protein structure
initiative; 2.30A {Sulfolobus solfataricus} SCOP:
c.151.1.1 c.152.1.1
Length = 336
Score = 26.7 bits (58), Expect = 1.4
Identities = 11/73 (15%), Positives = 24/73 (32%), Gaps = 8/73 (10%)
Query: 7 AYDLSANVQEEL---GLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKE 63
A+ ++E+L + + + A + + A RIV + K+K
Sbjct: 20 AFSAGETIKEKLKSFEIPVVHYRYKDAEIETIWKCYDAIVFVMALEGATRIVCKYAKSKT 79
Query: 64 LARYMSGPILIVC 76
P ++
Sbjct: 80 -----EDPAIVCI 87
>3cpx_A Aminopeptidase, M42 family; YP_676701.1, putative M42 glutamyl
aminopeptidase, structura genomics; 2.39A {Cytophaga
hutchinsonii atcc 33406}
Length = 321
Score = 26.6 bits (59), Expect = 1.4
Identities = 12/73 (16%), Positives = 26/73 (35%), Gaps = 11/73 (15%)
Query: 5 LDAYDLSANVQEELGLNTIQFEAYKAALTREFAIIQGPPG--TGKTY-------VALRIV 55
L+ ++ EE G ++ + A + F + Q T T VA+ +
Sbjct: 180 LEHGIIAFTCWEEHGGGSVAYLARW--IYETFHVKQSLICDITWVTEGVEAGKGVAISMR 237
Query: 56 EGFLKNKELARYM 68
+ + K+ +
Sbjct: 238 DRMIPRKKYVNRI 250
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop,
transferase; HET: ADP; 2.33A {Enterobacteria phage T4}
SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A*
2ia5_A
Length = 301
Score = 26.6 bits (58), Expect = 1.5
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 41 GPPGTGKTYVALRIVE 56
G PG+GK+ A +
Sbjct: 9 GCPGSGKSTWAREFIA 24
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET:
AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Length = 222
Score = 26.0 bits (58), Expect = 1.6
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 38 IIQGPPGTGKTYVALRIVEGF 58
+I G P +GK I +
Sbjct: 9 MISGAPASGKGTQCELIKTKY 29
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding
HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens}
SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A*
1xrj_A*
Length = 252
Score = 26.0 bits (57), Expect = 1.9
Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 21 NTIQFEAYKAALTREFAI-IQGPPGTGKTYVALRIVEGFLKN 61
+ F I + G +GK+ V +IV+ +N
Sbjct: 8 EQTLQNHQQPNGGEPFLIGVSGGTASGKSSVCAKIVQLLGQN 49
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding,
nucleoside kinase, nucleotide-binding; 2.50A {Homo
sapiens} PDB: 2uvq_A*
Length = 245
Score = 25.9 bits (57), Expect = 1.9
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 39 IQGPPGTGKTYVALRIVEGFLKN 61
+ G +GK+ V +I+E +N
Sbjct: 30 VSGGTASGKSTVCEKIMELLGQN 52
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable
holliday junction DNA helicase; HET: ADP; 2.69A
{Campylobacter jejuni subsp}
Length = 338
Score = 26.0 bits (58), Expect = 1.9
Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 13/52 (25%)
Query: 29 KAALTREFAI----IQGPPGTGKTYVALRIVEGFLKNKELA---RYMSGPIL 73
AA R + GP G GKT +A I E++ + + P++
Sbjct: 46 AAAKKRNECLDHILFSGPAGLGKTTLANIIS------YEMSANIKTTAAPMI 91
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination,
ATP-binding, cytoplasm, metal-binding, nucleotide
biosynthesis, nucleotide-binding; HET: AP5; 1.58A
{Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A*
2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A*
1zip_A* 1s3g_A*
Length = 216
Score = 26.0 bits (58), Expect = 2.0
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 38 IIQGPPGTGKTYVALRIVEGF 58
++ G PG GK RIVE +
Sbjct: 4 VLMGLPGAGKGTQGERIVEKY 24
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding,
nucleotide-binding, transferase; HET: AP5; 2.00A
{Marinibacillus marinus}
Length = 216
Score = 26.0 bits (58), Expect = 2.0
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 38 IIQGPPGTGKTYVALRIVEGF 58
++ G PG GK A +I+E +
Sbjct: 4 VLMGLPGAGKGTQAEQIIEKY 24
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 26.3 bits (58), Expect = 2.1
Identities = 10/45 (22%), Positives = 18/45 (40%)
Query: 20 LNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKEL 64
++ IQ + +K + I G G GK+ +A V +
Sbjct: 133 VHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGC 177
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A
{Sulfolobus acidocaldarius} SCOP: c.37.1.1
Length = 194
Score = 25.8 bits (56), Expect = 2.1
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 37 AIIQGPPGTGKTYVALRIVEGFLKNKELARYMS 69
I+ G PG GK+ V ++ E + ++
Sbjct: 4 GIVTGIPGVGKSTVLAKVKEILDNQGINNKIIN 36
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein;
ATP-binding, nucleotide-binding, membrane,
transmembrane, transport protein; 3.00A {Methanosarcina
acetivorans} SCOP: b.40.6.3 c.37.1.12
Length = 348
Score = 26.0 bits (58), Expect = 2.1
Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 35 EFAIIQGPPGTGKTYVALRIVEGF 58
E+ +I GP G GKT + L ++ GF
Sbjct: 27 EYFVILGPTGAGKT-LFLELIAGF 49
>2vli_A Antibiotic resistance protein; transferase, tunicamycin,
phosphotransferase; 1.95A {Deinococcus radiodurans}
Length = 183
Score = 25.7 bits (56), Expect = 2.3
Identities = 10/36 (27%), Positives = 13/36 (36%), Gaps = 10/36 (27%)
Query: 38 IIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPIL 73
I GP G GKT+ A L + G +
Sbjct: 9 WINGPFGVGKTHTA----------HTLHERLPGSFV 34
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A
{Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Length = 308
Score = 26.0 bits (57), Expect = 2.4
Identities = 12/71 (16%), Positives = 21/71 (29%), Gaps = 8/71 (11%)
Query: 10 LSANVQEELGLNTI--QFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARY 67
L+ + L + QF I G GK+ A + L+R+
Sbjct: 54 LNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQA------LLSRW 107
Query: 68 MSGPILIVCYT 78
+ + T
Sbjct: 108 PEHRRVELITT 118
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency
decline, ATP-binding, DNA DAMA repair, DNA-binding,
helicase, hydrolase; 1.95A {Escherichia coli} PDB:
2b2n_A* 4dfc_A
Length = 483
Score = 25.8 bits (57), Expect = 2.4
Identities = 5/50 (10%), Positives = 16/50 (32%), Gaps = 10/50 (20%)
Query: 38 IIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVE 87
++ G + E+A +GP++++ + +
Sbjct: 18 LLGELTGAACATLV----------AEIAERHAGPVVLIAPDMQNALRLHD 57
>2rgx_A Adenylate kinase; transferase(phosphotransferase), ATP-binding,
nucleo binding, transferase; HET: AP5; 1.90A {Aquifex
aeolicus} PDB: 2rh5_A
Length = 206
Score = 25.6 bits (57), Expect = 2.4
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 38 IIQGPPGTGKTYVALRIVEGF 58
+ GPPG GK A R+ +
Sbjct: 4 VFLGPPGAGKGTQAKRLAKEK 24
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the
strand order 23145, walker A motif, cholesterol
biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Length = 202
Score = 25.7 bits (56), Expect = 2.4
Identities = 9/46 (19%), Positives = 17/46 (36%)
Query: 38 IIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALD 83
+ G +GK +V + + +SGP+ H L+
Sbjct: 15 LFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLN 60
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A
{Enterobacteria phage T4} SCOP: c.37.1.1
Length = 181
Score = 25.5 bits (56), Expect = 2.6
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 41 GPPGTGKTYVALRIVE 56
G PG+GK+ A +
Sbjct: 9 GCPGSGKSTWAREFIA 24
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase,
nucleotide-binding, Pro serine protease, stress
response; HET: ADP; 3.40A {Bacillus subtilis} PDB:
1x37_A
Length = 543
Score = 25.5 bits (57), Expect = 2.7
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 41 GPPGTGKT 48
GPPG GKT
Sbjct: 115 GPPGVGKT 122
>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis,
amino-acid biosynthesis, homoserine transacetylase,
homoserine transsuccinylase; 2.00A {Bacillus cereus}
PDB: 2ghr_A
Length = 301
Score = 25.9 bits (56), Expect = 2.8
Identities = 13/57 (22%), Positives = 21/57 (36%)
Query: 37 AIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKYT 93
II G P ++ + E + E ++ L +C+ A GV KY
Sbjct: 103 LIITGAPVETLSFEEVDYWEELKRIMEYSKTNVTSTLHICWGAQAGLYHHYGVQKYP 159
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P;
2.25A {Thermus thermophilus} PDB: 3asy_A*
Length = 211
Score = 25.7 bits (57), Expect = 2.8
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 39 IQGPPGTGKTYVALRIVEGF 58
I G +GKT +A +
Sbjct: 11 IAGGTASGKTTLAQALARTL 30
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A
{Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB:
1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Length = 334
Score = 25.5 bits (56), Expect = 3.0
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 38 IIQGPPGTGKTYVALRIVEGFL 59
+IQ PG G + + L
Sbjct: 28 LIQALPGMGDDALIYALSRYLL 49
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase,
nuclease, double strand DNA repair, protein-DNA CO
hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus
subtilis} PDB: 3u44_B*
Length = 1166
Score = 25.8 bits (56), Expect = 3.1
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 7/45 (15%)
Query: 38 IIQGPPGTGKTYVAL-RIVEGFLKNKELARYMSGPILIVCYTNHA 81
+ G G+GKT + + I + EL R G +I +
Sbjct: 5 FLVGRSGSGKTKLIINSIQD------ELRRAPFGKPIIFLVPDQM 43
>2i6x_A Hydrolase, haloacid dehalogenase-like family; HAD superfamily,
struct genomics, PSI-2, protein structure initiative;
HET: MSE; 2.40A {Porphyromonas gingivalis}
Length = 211
Score = 25.5 bits (56), Expect = 3.5
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 9 DLSANVQ--EELGLNTIQFEAYKAALTREFAIIQ 40
D ANV E LG +T + + + +++
Sbjct: 175 DGPANVATAERLGFHTYCPDNGENWIPAITRLLR 208
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural
genomics, center for structural genomics; 2.80A
{Escherichia coli}
Length = 145
Score = 25.2 bits (56), Expect = 3.5
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 39 IQGPPGTGKTYVA 51
+ G PGTG+ A
Sbjct: 29 LYGAPGTGRMTGA 41
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase,
antibiotic resistance, phosphorylation, mononucleoti
binding fold; HET: ATP; 2.50A {Streptomyces venezuelae}
SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A*
1qhy_A*
Length = 178
Score = 25.1 bits (54), Expect = 3.9
Identities = 4/19 (21%), Positives = 8/19 (42%)
Query: 38 IIQGPPGTGKTYVALRIVE 56
I+ G GK+ + +
Sbjct: 7 ILNGGSSAGKSGIVRCLQS 25
>1xjc_A MOBB protein homolog; structural genomics, midwest center for
structural GEN PSI, protein structure initiative, MCSG;
2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Length = 169
Score = 25.0 bits (54), Expect = 4.0
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 39 IQGPPGTGKTYVALRIVEGF 58
+ G +GKT + + V
Sbjct: 9 VVGYKHSGKTTLMEKWVAAA 28
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein
structure initiati YORK structural genomics research
consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Length = 202
Score = 25.0 bits (54), Expect = 4.2
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 38 IIQGPPGTGKTYVALRI 54
++ G G+GK+ V I
Sbjct: 22 VVMGVSGSGKSSVGEAI 38
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta
motif, beta sandwich, ligand binding protein; 1.90A
{Alicyclobacillus acidocaldarius}
Length = 355
Score = 25.3 bits (56), Expect = 4.3
Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 35 EFAIIQGPPGTGKTYVALRIVEGF 58
E + GP G+GKT + LR++ G
Sbjct: 42 EMVGLLGPSGSGKTTI-LRLIAGL 64
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase,
ATP-binding cassette, ATPase, transport protein; 1.45A
{Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB:
1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Length = 353
Score = 24.9 bits (55), Expect = 4.4
Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 35 EFAIIQGPPGTGKTYVALRIVEGF 58
E I GP G GKT +RI+ G
Sbjct: 32 ERFGILGPSGAGKT-TFMRIIAGL 54
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 340
Score = 25.1 bits (55), Expect = 4.4
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 38 IIQGPPGTGKTYVAL 52
+ GPPGTGKT +
Sbjct: 50 LFYGPPGTGKTSTIV 64
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P;
hydrolase, type IV secretion, conjugation; 2.35A
{Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Length = 392
Score = 25.0 bits (54), Expect = 4.4
Identities = 13/57 (22%), Positives = 17/57 (29%), Gaps = 10/57 (17%)
Query: 32 LTREFAIIQGPPGTGKTYVALRIVEGFLKNKELAR-YMSGPILIVCYTNHALDQFVE 87
T I PG GK+ F L R YM G +I+ +
Sbjct: 33 RTNSNWTILAKPGAGKS---------FTAKMLLLREYMQGSRVIIIDPEREYKEMCR 80
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 25.2 bits (55), Expect = 4.5
Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 4/24 (16%)
Query: 38 IIQGPPGTGKTYVALRIVEGFLKN 61
I+ GPPG+GKT + L+
Sbjct: 1308 ILCGPPGSGKTM----TLTSTLRA 1327
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin
biosynthesis; HET: DST AMP; 2.10A {Agrobacterium
tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Length = 253
Score = 25.2 bits (55), Expect = 4.6
Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 10/36 (27%)
Query: 38 IIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPIL 73
+I GP +GKT +A+ ++A+ P++
Sbjct: 5 LIYGPTCSGKTDMAI----------QIAQETGWPVV 30
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET:
ATP; 2.37A {Humulus lupulus}
Length = 339
Score = 24.9 bits (54), Expect = 4.8
Identities = 6/21 (28%), Positives = 13/21 (61%)
Query: 38 IIQGPPGTGKTYVALRIVEGF 58
++ G GTGK+ +++ + F
Sbjct: 44 VLMGATGTGKSRLSIDLAAHF 64
>3io5_A Recombination and repair protein; storage dimer, inactive
conformation, RECA like core domain, binding, DNA
damage, DNA recombination; 2.40A {Enterobacteria phage
T4}
Length = 333
Score = 24.8 bits (54), Expect = 5.1
Identities = 6/32 (18%), Positives = 14/32 (43%)
Query: 32 LTREFAIIQGPPGTGKTYVALRIVEGFLKNKE 63
+ I+ GP + K+ L +V +++
Sbjct: 26 MQSGLLILAGPSKSFKSNFGLTMVSSYMRQYP 57
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and
beta protein; HET: GSP; 1.90A {Methanocaldococcus
jannaschii} PDB: 2hf8_A*
Length = 226
Score = 24.5 bits (54), Expect = 5.5
Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 13/63 (20%)
Query: 1 HSSILDAYDLSANVQEELGLNTIQFEAYKAALTREFAI-IQGPPGTGKTYVALRIVEGFL 59
IL A A+ N + A G G+GKT + ++++ L
Sbjct: 15 AKDILKANKRLADK------NRKLLNKHGV-----VAFDFMGAIGSGKTLLIEKLID-NL 62
Query: 60 KNK 62
K+K
Sbjct: 63 KDK 65
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase,
hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP:
b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19
d.315.1.1
Length = 1151
Score = 25.0 bits (55), Expect = 6.0
Identities = 5/50 (10%), Positives = 16/50 (32%), Gaps = 10/50 (20%)
Query: 38 IIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVE 87
++ G + E+A +GP++++ + +
Sbjct: 21 LLGELTGAACATLV----------AEIAERHAGPVVLIAPDMQNALRLHD 60
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase;
HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A*
3l0p_A*
Length = 223
Score = 24.5 bits (54), Expect = 6.1
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 38 IIQGPPGTGKTYVALRIVEGF 58
+I GP G+GK + + +
Sbjct: 4 LIFGPNGSGKGTQGNLVKDKY 24
>2v1u_A Cell division control protein 6 homolog; DNA replication,
nucleotide-binding, replication, archaea; HET: ADP;
3.10A {Aeropyrum pernix}
Length = 387
Score = 24.8 bits (53), Expect = 6.3
Identities = 11/55 (20%), Positives = 20/55 (36%)
Query: 37 AIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLK 91
A++ G GTGKT VA ++ + PI + + + +
Sbjct: 47 ALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAE 101
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding
protein; 2.30A {Archaeoglobus fulgidus}
Length = 221
Score = 24.5 bits (54), Expect = 6.4
Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 36 FAI-IQGPPGTGKTYVALRIVEGFLKNK 62
A+ I G G+GKT + R +E + N+
Sbjct: 31 VAVNIMGAIGSGKTLLIERTIE-RIGNE 57
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 323
Score = 24.7 bits (54), Expect = 6.6
Identities = 8/15 (53%), Positives = 8/15 (53%)
Query: 38 IIQGPPGTGKTYVAL 52
II G PG GKT
Sbjct: 46 IISGMPGIGKTTSVH 60
>2b0c_A Putative phosphatase; alpha-D-glucose-1-phosphate, structural
genomic protein structure initiative, midwest center for
structural genomics, MCSG; HET: G1P; 2.00A {Escherichia
coli} SCOP: c.108.1.2
Length = 206
Score = 24.6 bits (54), Expect = 6.8
Identities = 5/26 (19%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 9 DLSANVQ--EELGLNTIQFEAYKAAL 32
D + N++ +LG+ +I +
Sbjct: 173 DNADNIEGANQLGITSILVKDKTTIP 198
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed
alpha-beta fold, elongated beta-sheet, walker A motif,
P-loop structural motif; 1.90A {Escherichia coli} SCOP:
c.37.1.10 PDB: 1p9n_A
Length = 174
Score = 24.4 bits (52), Expect = 6.9
Identities = 6/23 (26%), Positives = 10/23 (43%), Gaps = 1/23 (4%)
Query: 36 FAIIQGPPGTGKTYVALRIVEGF 58
A GTGKT + +++
Sbjct: 9 LAFA-AWSGTGKTTLLKKLIPAL 30
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus
abyssi}
Length = 350
Score = 24.3 bits (52), Expect = 7.9
Identities = 5/30 (16%), Positives = 10/30 (33%), Gaps = 4/30 (13%)
Query: 34 REFAIIQGPPGTGKTYVALRIVEGFLKNKE 63
++ G GK+ + FL +
Sbjct: 31 YPLTLLLGIRRVGKSSLLRA----FLNERP 56
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 353
Score = 24.4 bits (53), Expect = 8.2
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 38 IIQGPPGTGKTYVAL 52
+ GPPGTGKT L
Sbjct: 62 LFYGPPGTGKTSTIL 76
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism,
ATP-binding, nucleotide biosynthesis,
nucleotide-binding, transferase; HET: ADP; 1.9A
{Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Length = 201
Score = 24.1 bits (53), Expect = 8.5
Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
Query: 38 IIQGPPGTGK-TYVALRIVEGF 58
++ GPPG GK T A+++ E
Sbjct: 24 LLLGPPGAGKGTQ-AVKLAEKL 44
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 354
Score = 24.1 bits (52), Expect = 8.9
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 38 IIQGPPGTGKTYVAL 52
++ GP GTGK +
Sbjct: 40 LLYGPNGTGKKTRCM 54
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB);
structural genomics, PSI, protein structure initiative;
2.10A {Archaeoglobus fulgidus}
Length = 171
Score = 23.9 bits (51), Expect = 10.0
Identities = 6/23 (26%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 36 FAIIQGPPGTGKTYVALRIVEGF 58
+I+ G +GKT + R++
Sbjct: 5 LSIV-GTSDSGKTTLITRMMPIL 26
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.386
Gapped
Lambda K H
0.267 0.0625 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,459,652
Number of extensions: 78342
Number of successful extensions: 474
Number of sequences better than 10.0: 1
Number of HSP's gapped: 469
Number of HSP's successfully gapped: 191
Length of query: 97
Length of database: 6,701,793
Length adjustment: 63
Effective length of query: 34
Effective length of database: 4,942,770
Effective search space: 168054180
Effective search space used: 168054180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.6 bits)