RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16285
(97 letters)
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia
coli, RepD [TaxId: 562]}
Length = 306
Score = 39.3 bits (90), Expect = 2e-05
Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 5/72 (6%)
Query: 20 LNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTN 79
LN Q +A + ++ G+GKT V + ++ Y + I V +TN
Sbjct: 2 LNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGC---GYQARHIAAVTFTN 56
Query: 80 HALDQFVEGVLK 91
A + E V +
Sbjct: 57 KAAREMKERVGQ 68
>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain
(RecD) {Escherichia coli [TaxId: 562]}
Length = 359
Score = 39.1 bits (90), Expect = 2e-05
Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 3/73 (4%)
Query: 15 QEELGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILI 74
Q A ALTR ++I G PGTGKT +++ ++ + R I +
Sbjct: 144 FPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERC---RIRL 200
Query: 75 VCYTNHALDQFVE 87
T A + E
Sbjct: 201 AAPTGKAAARLTE 213
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus
stearothermophilus, PcrA [TaxId: 1422]}
Length = 318
Score = 38.8 bits (89), Expect = 2e-05
Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 5/74 (6%)
Query: 19 GLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYT 78
LN Q EA + T +I G+GKT V + + K +A IL + +T
Sbjct: 11 HLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVA---PWNILAITFT 65
Query: 79 NHALDQFVEGVLKY 92
N A + E V
Sbjct: 66 NKAAREMRERVQSL 79
>g1qhh.1 c.37.1.19 (A:,B:,C:,D:) DEXX box DNA helicase {Bacillus
stearothermophilus, PcrA [TaxId: 1422]}
Length = 623
Score = 35.3 bits (80), Expect = 5e-04
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 19 GLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYT 78
LN Q EA + T +I G+GKT V + + K +A IL + +T
Sbjct: 11 HLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVA---PWNILAITFT 65
Query: 79 NHA 81
N A
Sbjct: 66 NKA 68
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 34.8 bits (78), Expect = 5e-04
Identities = 14/58 (24%), Positives = 19/58 (32%), Gaps = 1/58 (1%)
Query: 23 IQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNH 80
Q Y +I P G GKT +A+ I E L M P + +
Sbjct: 13 YQEVIYAKCK-ETNCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHA 69
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 33.5 bits (76), Expect = 0.002
Identities = 11/65 (16%), Positives = 24/65 (36%), Gaps = 14/65 (21%)
Query: 19 GLNTIQFEAYKAALT----REFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILI 74
++++ ++ K + + + + +GP +GKT +A L G L
Sbjct: 135 KMDSVVYDFLKCMVYNIPKKRYWLFKGPIDSGKTTLA----------AALLELCGGKALN 184
Query: 75 VCYTN 79
V
Sbjct: 185 VNLPL 189
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 33.1 bits (74), Expect = 0.002
Identities = 10/53 (18%), Positives = 16/53 (30%), Gaps = 6/53 (11%)
Query: 35 EFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVE 87
++ PG GKT L + L++ T L + E
Sbjct: 8 MTTVLDFHPGAGKTRRFLPQILAE------CARRRLRTLVLAPTRVVLSEMKE 54
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 32.3 bits (72), Expect = 0.004
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 38 IIQGPPGTGKTYVALRIVEGFLKNKE 63
+ GPPG GKT + + E +
Sbjct: 5 FLTGPPGVGKTTLIHKASEVLKSSGV 30
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 32.3 bits (72), Expect = 0.006
Identities = 10/47 (21%), Positives = 16/47 (34%)
Query: 34 REFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNH 80
+ P G GK+ +AL++ +L P V Y
Sbjct: 29 GTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPA 75
>d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain
(RecB), N-terminal domain {Escherichia coli [TaxId:
562]}
Length = 485
Score = 32.0 bits (71), Expect = 0.006
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 5/49 (10%)
Query: 38 IIQGPPGTGKTYVALRIVEGFLKNKELARYMSGP-----ILIVCYTNHA 81
+I+ GTGKT+ + L + P +L+V +T A
Sbjct: 20 LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAA 68
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 387
Score = 32.0 bits (72), Expect = 0.006
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 8/36 (22%)
Query: 37 AIIQGPPGTGKTYV----ALRIVEG----FLKNKEL 64
++ G PG GKT + A RIV+G LK K +
Sbjct: 46 PVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRI 81
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 31.8 bits (71), Expect = 0.006
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 34 REFAIIQGPPGTGKTYVAL 52
+ I+ PG GKT L
Sbjct: 9 KRLTIMDLHPGAGKTKRYL 27
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 31.6 bits (70), Expect = 0.006
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 38 IIQGPPGTGKTYVALRIVEGFL 59
+ G PG+GK+ A +
Sbjct: 6 LTIGCPGSGKSTWAREFIAKNP 27
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 31.7 bits (70), Expect = 0.008
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 38 IIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVC 76
+ G PGTGKT R + K+K AR++ I
Sbjct: 47 TLLGRPGTGKTVTL-RKLWELYKDKTTARFVYINGFIYR 84
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia
coli [TaxId: 562]}
Length = 206
Score = 31.1 bits (69), Expect = 0.012
Identities = 9/62 (14%), Positives = 18/62 (29%), Gaps = 7/62 (11%)
Query: 6 DAYDLSANVQEEL-------GLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGF 58
+ +L + ++ L Q E L+ ++ P G GK+
Sbjct: 5 EVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL 64
Query: 59 LK 60
Sbjct: 65 NG 66
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio
rerio) [TaxId: 7955]}
Length = 298
Score = 31.2 bits (69), Expect = 0.014
Identities = 11/67 (16%), Positives = 24/67 (35%), Gaps = 2/67 (2%)
Query: 15 QEELGLNTIQFEAYKAALTREFAIIQGP-PGTGKTYVALRIVEGFLKNKELARYMSGPIL 73
Q E G+ + + + I G GKT + ++ LK + ++
Sbjct: 60 QRE-GVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVI 118
Query: 74 IVCYTNH 80
+V ++
Sbjct: 119 VVSPSSL 125
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 237
Score = 30.6 bits (68), Expect = 0.018
Identities = 16/74 (21%), Positives = 24/74 (32%), Gaps = 7/74 (9%)
Query: 23 IQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHAL 82
IQ K L +E P G GKT L + ++ T+ +
Sbjct: 47 IQKMWAKRILRKESFAATAPTGVGKTSFGLAMS-------LFLALKGKRCYVIFPTSLLV 99
Query: 83 DQFVEGVLKYTQNT 96
Q E + KY +
Sbjct: 100 IQAAETIRKYAEKA 113
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human
hepatitis C virus (HCV), different isolates [TaxId:
11103]}
Length = 136
Score = 30.2 bits (67), Expect = 0.019
Identities = 7/27 (25%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 31 ALTREF--AIIQGPPGTGKTYVALRIV 55
A+ + F A + P G+GK+
Sbjct: 3 AVPQSFQVAHLHAPTGSGKSTKVPAAY 29
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 181
Score = 30.3 bits (67), Expect = 0.025
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 38 IIQGPPGTGKTYVALRIVEGF 58
++ GPPG GK A+++ E
Sbjct: 4 LLLGPPGAGKGTQAVKLAEKL 24
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 196
Score = 30.0 bits (66), Expect = 0.031
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 38 IIQGPPGTGKTYVALRIVEGF 58
+ G PG GK ++V+ +
Sbjct: 12 FVLGGPGAGKGTQCEKLVKDY 32
>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain
{Human papillomavirus type 18 [TaxId: 333761]}
Length = 205
Score = 29.8 bits (67), Expect = 0.031
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 6/51 (11%)
Query: 19 GLNTIQF-EAYKAALT----REFAIIQGPPGTGKTYVALRIVEGFLKNKEL 64
+ I F A K+ L + + GP TGK+Y + + F++ +
Sbjct: 33 QIEFITFLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFI-HFIQGAVI 82
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum
[TaxId: 44689]}
Length = 194
Score = 29.9 bits (66), Expect = 0.031
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 38 IIQGPPGTGKTYVALRIVEGF 58
+ G PG+GK IV F
Sbjct: 10 FVLGGPGSGKGTQCANIVRDF 30
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 29.6 bits (65), Expect = 0.034
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 38 IIQGPPGTGKTYVALRIVE 56
II GP G GK+ R+
Sbjct: 6 IITGPAGVGKSTTCKRLAA 24
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania
major [TaxId: 5664]}
Length = 174
Score = 29.6 bits (65), Expect = 0.038
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 38 IIQGPPGTGKTYVALRIVE 56
+I G PGTGKT +A I
Sbjct: 9 LITGTPGTGKTSMAEMIAA 27
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 258
Score = 29.7 bits (65), Expect = 0.039
Identities = 6/33 (18%), Positives = 10/33 (30%)
Query: 38 IIQGPPGTGKTYVALRIVEGFLKNKELARYMSG 70
G G+GKT + + + L
Sbjct: 38 EFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEA 70
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 180
Score = 29.5 bits (65), Expect = 0.039
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 38 IIQGPPGTGKTYVALRIVEGF 58
++ GPPG GK A + E F
Sbjct: 6 VLIGPPGAGKGTQAPNLQERF 26
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Length = 190
Score = 29.5 bits (65), Expect = 0.041
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 38 IIQGPPGTGKTYVALRIVEGF 58
++ GPPG GK A ++ + F
Sbjct: 7 VLLGPPGAGKGTQAPKLAKNF 27
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 202
Score = 29.6 bits (65), Expect = 0.044
Identities = 16/83 (19%), Positives = 27/83 (32%), Gaps = 10/83 (12%)
Query: 16 EELG---LNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPI 72
+E G L Q EA + + + ++ P GKT +A + G
Sbjct: 19 KEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREA-------IKGGKS 71
Query: 73 LIVCYTNHALDQFVEGVLKYTQN 95
L V + E K+ +
Sbjct: 72 LYVVPLRALAGEKYESFKKWEKI 94
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 29.5 bits (65), Expect = 0.050
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 2 SSILDAYDLSANVQEELGLNTIQFEAYKAALTREFAII-QGPPGTGKTYVALRIVEGF 58
++I++ D + L N + K A+ A + G PG+GKT + I E
Sbjct: 1 ANIVNFTD--KQFENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEET 56
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 194
Score = 29.2 bits (64), Expect = 0.053
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 38 IIQGPPGTGKTYVALRIVEGF 58
+ G PG GK RIVE +
Sbjct: 5 FVLGGPGAGKGTQCARIVEKY 25
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 29.1 bits (64), Expect = 0.053
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 38 IIQGPPGTGKTYVALRIVE 56
++ G PG+GK+ +A +
Sbjct: 8 LLSGHPGSGKSTIAEALAN 26
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54
(NtrC1), C-terminal domain {Aquifex aeolicus [TaxId:
63363]}
Length = 247
Score = 29.1 bits (65), Expect = 0.055
Identities = 9/28 (32%), Positives = 11/28 (39%)
Query: 27 AYKAALTREFAIIQGPPGTGKTYVALRI 54
K + +I G G GK VA I
Sbjct: 16 IKKISCAECPVLITGESGVGKEVVARLI 43
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15
homolog {Human (Homo sapiens) [TaxId: 9606]}
Length = 258
Score = 29.3 bits (64), Expect = 0.056
Identities = 5/31 (16%), Positives = 8/31 (25%)
Query: 38 IIQGPPGTGKTYVALRIVEGFLKNKELARYM 68
G TGKT ++ +
Sbjct: 41 EAFGEFRTGKTQLSHTLCVTAQLPGAGGYPG 71
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId:
161736]}
Length = 321
Score = 29.2 bits (65), Expect = 0.057
Identities = 6/27 (22%), Positives = 9/27 (33%)
Query: 25 FEAYKAALTREFAIIQGPPGTGKTYVA 51
E I+ G +GKT +
Sbjct: 114 AEFGGHRYASGMVIVTGKGNSGKTPLV 140
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Length = 189
Score = 29.0 bits (64), Expect = 0.057
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 38 IIQGPPGTGKTYVALRIVEGF 58
I G PG+GK V+ RI + F
Sbjct: 10 AIMGAPGSGKGTVSSRITKHF 30
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
globisporus [TaxId: 1459]}
Length = 182
Score = 29.1 bits (64), Expect = 0.058
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 38 IIQGPPGTGKTYVALRIVEGF 58
++ G PG GK A RIVE +
Sbjct: 4 VLMGLPGAGKGTQADRIVEKY 24
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 194
Score = 29.1 bits (64), Expect = 0.059
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 38 IIQGPPGTGKTYVALRIVEGF 58
+ G PG+GK +IV+ +
Sbjct: 12 FVVGGPGSGKGTQCEKIVQKY 32
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 29.1 bits (64), Expect = 0.064
Identities = 5/19 (26%), Positives = 8/19 (42%)
Query: 38 IIQGPPGTGKTYVALRIVE 56
+ G PG GK+ +
Sbjct: 18 VAVGFPGAGKSTFIQEHLV 36
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens),
isoenzyme 6 [TaxId: 9606]}
Length = 173
Score = 29.1 bits (64), Expect = 0.064
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 38 IIQGPPGTGKTYVALRIVE 56
++ G PG GKT + +
Sbjct: 8 LLTGTPGVGKTTLGKELAS 26
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of
N-ethylmalemide-sensitive fusion (NSF) protein {Chinese
hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 246
Score = 29.1 bits (64), Expect = 0.065
Identities = 7/14 (50%), Positives = 12/14 (85%)
Query: 38 IIQGPPGTGKTYVA 51
+++GPP +GKT +A
Sbjct: 44 LLEGPPHSGKTALA 57
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 29.0 bits (63), Expect = 0.072
Identities = 5/25 (20%), Positives = 8/25 (32%)
Query: 38 IIQGPPGTGKTYVALRIVEGFLKNK 62
+ G TGKT + +
Sbjct: 27 EMFGEFRTGKTQICHTLAVTCQLPI 51
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 182
Score = 28.7 bits (63), Expect = 0.076
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 38 IIQGPPGTGKTYVALRIVEGF 58
++ G PG GK A +IV +
Sbjct: 4 VLMGLPGAGKGTQAEKIVAAY 24
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea
mays) [TaxId: 4577]}
Length = 189
Score = 28.7 bits (63), Expect = 0.078
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 38 IIQGPPGTGKTYVALRIVEGF 58
+I G P +GK I +
Sbjct: 7 MISGAPASGKGTQCELIKTKY 27
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 28.7 bits (63), Expect = 0.078
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 38 IIQGPPGTGKTYVALRIVEGF 58
I+ G P GK A I+E +
Sbjct: 4 ILLGAPVAGKGTQAQFIMEKY 24
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 206
Score = 28.7 bits (63), Expect = 0.085
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 16 EELGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVA 51
E+ L Q +A + L + I P G+GKT+VA
Sbjct: 67 AEISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVA 102
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 28.6 bits (62), Expect = 0.087
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 39 IQGPPGTGKTYVALRIVE 56
I G +GKT +A ++ +
Sbjct: 27 IDGLSRSGKTTLANQLSQ 44
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase,
BchI {Rhodobacter capsulatus [TaxId: 1061]}
Length = 333
Score = 28.7 bits (63), Expect = 0.090
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 38 IIQGPPGTGKTYVALRI 54
++ G GTGK+ +
Sbjct: 32 LVFGDRGTGKSTAVRAL 48
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein
TrwB {Escherichia coli [TaxId: 562]}
Length = 433
Score = 28.7 bits (63), Expect = 0.092
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 29 KAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKE 63
+ A R + G GTGK+ + + L +
Sbjct: 46 RDAEPRHLLVN-GATGTGKSVLLRELAYTGLLRGD 79
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 28.4 bits (62), Expect = 0.10
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 38 IIQGPPGTGKTYVALRIVEGFLKN 61
+ G GTGKT + R VE N
Sbjct: 30 LATGATGTGKTLLVSRFVENACAN 53
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 251
Score = 28.5 bits (62), Expect = 0.11
Identities = 5/47 (10%), Positives = 12/47 (25%), Gaps = 2/47 (4%)
Query: 38 IIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQ 84
+ G TGK+ + + ++ + T
Sbjct: 38 ELFGEFRTGKSQLCHTLAVTCQIPLDIGG--GEGKCLYIDTEGTFRP 82
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase),
helicase domain {Bacteriophage T7 [TaxId: 10760]}
Length = 277
Score = 28.5 bits (62), Expect = 0.11
Identities = 4/28 (14%), Positives = 9/28 (32%)
Query: 35 EFAIIQGPPGTGKTYVALRIVEGFLKNK 62
E ++ G GK+ + +
Sbjct: 36 EVIMVTSGSGMGKSTFVRQQALQWGTAM 63
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 28.6 bits (62), Expect = 0.12
Identities = 5/25 (20%), Positives = 10/25 (40%)
Query: 32 LTREFAIIQGPPGTGKTYVALRIVE 56
L ++ G TGK+ + +
Sbjct: 27 LRAPITLVLGLRRTGKSSIIKIGIN 51
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 28.1 bits (61), Expect = 0.13
Identities = 4/19 (21%), Positives = 8/19 (42%)
Query: 38 IIQGPPGTGKTYVALRIVE 56
I+ G GK+ + +
Sbjct: 7 ILNGGSSAGKSGIVRCLQS 25
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}
Length = 225
Score = 28.1 bits (61), Expect = 0.13
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 39 IQGPPGTGKTYVALRIVE 56
I GP G GK + + E
Sbjct: 8 IDGPSGAGKGTLCKAMAE 25
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import
ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 240
Score = 28.1 bits (62), Expect = 0.14
Identities = 10/27 (37%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 34 REFAIIQGPPGTGKTYVALRIVEGFLK 60
R++ ++ GP G GK+ V L ++ G +K
Sbjct: 24 RDYCVLLGPTGAGKS-VFLELIAGIVK 49
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 28.0 bits (61), Expect = 0.15
Identities = 8/33 (24%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 38 IIQGPPGTGKTYVALRI-VEGFLKNKELARYMS 69
++ G GTGKT +++ G ++ E +++
Sbjct: 30 LVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVT 62
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 213
Score = 28.0 bits (61), Expect = 0.16
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 39 IQGPPGTGKTYVALRIVEGFLKNKELARYMSGPIL 73
+ G +GK+ V +IV+ +N+ R IL
Sbjct: 7 VSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVIL 41
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 27.8 bits (60), Expect = 0.18
Identities = 11/63 (17%), Positives = 14/63 (22%), Gaps = 4/63 (6%)
Query: 38 IIQGPPGTGKT----YVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVLKYT 93
G G GKT + R+ E K + L V
Sbjct: 50 GSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPI 109
Query: 94 QNT 96
Q
Sbjct: 110 QVR 112
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 309
Score = 27.9 bits (61), Expect = 0.18
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 37 AIIQGPPGTGKTYVA 51
++ GP G GKT +A
Sbjct: 52 ILMIGPTGVGKTEIA 66
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 286
Score = 27.8 bits (61), Expect = 0.19
Identities = 6/23 (26%), Positives = 14/23 (60%)
Query: 39 IQGPPGTGKTYVALRIVEGFLKN 61
GP G+GK++ +++I ++
Sbjct: 32 FSGPQGSGKSFTSIQIYNHLMEK 54
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase
III, N-domain {Escherichia coli [TaxId: 562]}
Length = 207
Score = 27.8 bits (60), Expect = 0.20
Identities = 5/17 (29%), Positives = 8/17 (47%)
Query: 38 IIQGPPGTGKTYVALRI 54
+IQ PG G + +
Sbjct: 28 LIQALPGMGDDALIYAL 44
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 443
Score = 27.8 bits (61), Expect = 0.21
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 10/35 (28%)
Query: 41 GPPGTGKTYVALRIVEGFLKNKELARYMSGPILIV 75
GP G GKT +A + LA+ + P + V
Sbjct: 56 GPTGVGKTEIA----------RRLAKLANAPFIKV 80
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III,
N-domain {Thermotoga maritima [TaxId: 2336]}
Length = 198
Score = 27.3 bits (60), Expect = 0.24
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 38 IIQGPPGTGKTYVALRIVEGFLKNKE 63
+I G + V+L + E K
Sbjct: 19 LINGEDLSYPREVSLELPEYVEKFPP 44
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 27.3 bits (59), Expect = 0.24
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 36 FAIIQGPPGTGKTYVALRIVEGFLKNK 62
I+ G PG GK+ V ++ E
Sbjct: 3 IGIVTGIPGVGKSTVLAKVKEILDNQG 29
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 27.3 bits (59), Expect = 0.24
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 38 IIQGPPGTGKTYVALRIVE 56
++ G G+GK+ VA +
Sbjct: 10 VLMGVSGSGKSAVASEVAH 28
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae
[TaxId: 1313]}
Length = 223
Score = 27.3 bits (59), Expect = 0.26
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 39 IQGPPGTGKTYVALRIVEGF 58
I GP +GK+ VA I + F
Sbjct: 8 IDGPASSGKSTVAKIIAKDF 27
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 254
Score = 27.4 bits (59), Expect = 0.26
Identities = 9/40 (22%), Positives = 14/40 (35%), Gaps = 4/40 (10%)
Query: 38 IIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCY 77
+ G G+GKT +A +L G V +
Sbjct: 40 EVFGEFGSGKTQLAHT----LAVMVQLPPEEGGLNGSVIW 75
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 253
Score = 27.4 bits (59), Expect = 0.26
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 37 AIIQGPPGTGKTYVALRI 54
A++ GPPG GKT A +
Sbjct: 55 AMLYGPPGIGKTTAAHLV 72
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB
{Methylobacterium extorquens [TaxId: 408]}
Length = 323
Score = 27.2 bits (59), Expect = 0.36
Identities = 6/34 (17%), Positives = 10/34 (29%)
Query: 39 IQGPPGTGKTYVALRIVEGFLKNKELARYMSGPI 72
I G PG GK+ + ++
Sbjct: 56 ITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDP 89
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB
{Thermus thermophilus [TaxId: 274]}
Length = 239
Score = 26.8 bits (58), Expect = 0.36
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 37 AIIQGPPGTGKTYVA 51
++ GPPG GKT +A
Sbjct: 38 LLLFGPPGLGKTTLA 52
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 26.7 bits (58), Expect = 0.41
Identities = 7/35 (20%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 39 IQGPPGTGKTYVALRIVEGFLK-NKELARYMSGPI 72
+ G PG GK+ ++ ++A P
Sbjct: 59 VTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPS 93
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 26.6 bits (57), Expect = 0.48
Identities = 6/36 (16%), Positives = 11/36 (30%), Gaps = 10/36 (27%)
Query: 38 IIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPIL 73
I G +GK+ + +LA +
Sbjct: 11 AILGGESSGKSVLV----------NKLAAVFNTTSA 36
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 252
Score = 26.7 bits (57), Expect = 0.48
Identities = 8/52 (15%), Positives = 14/52 (26%), Gaps = 1/52 (1%)
Query: 38 IIQGPPGTGKTYVA-LRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEG 88
++ GP GTGK + F + + L+
Sbjct: 37 LLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSP 88
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 26.5 bits (57), Expect = 0.50
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 38 IIQGPPGTGKTYVALRIVEGFLKNK 62
++ G PG G T + ++ K
Sbjct: 5 VVTGVPGVGSTTSSQLAMDNLRKEG 29
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 26.5 bits (57), Expect = 0.52
Identities = 8/25 (32%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 39 IQGPPGTGKTYVALRIVEGFLKNKE 63
I G PG GKT + ++ + L +
Sbjct: 5 ITGEPGVGKTTL-VKKIVERLGKRA 28
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 26.1 bits (56), Expect = 0.66
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 38 IIQGPPGTGKTYVALRIVE 56
GTGKT + +++
Sbjct: 6 AFAAWSGTGKTTLLKKLIP 24
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 26.2 bits (56), Expect = 0.70
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 32 LTREFAI-IQGPPGTGKTYVALRIVEG 57
+TRE I I G G GKT + R+ G
Sbjct: 2 MTREMRILILGLDGAGKTTILYRLQVG 28
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 26.1 bits (56), Expect = 0.71
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 38 IIQGPPGTGKTYVALRIVE 56
++ G P GKTY++ ++
Sbjct: 6 VMVGLPARGKTYISKKLTR 24
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter
sphaeroides [TaxId: 1063]}
Length = 288
Score = 26.1 bits (57), Expect = 0.71
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 39 IQGPPGTGKTYVALRIVEGF 58
+ G G G + V + F
Sbjct: 9 VTGSSGAGTSTVKHTFDQIF 28
>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli
[TaxId: 562]}
Length = 308
Score = 26.2 bits (57), Expect = 0.74
Identities = 11/68 (16%), Positives = 20/68 (29%), Gaps = 8/68 (11%)
Query: 10 LSANVQEELGLNTI--QFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLKNKELARY 67
L+ + L + QF I G GK+ A + L+R+
Sbjct: 54 LNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQA------LLSRW 107
Query: 68 MSGPILIV 75
+ +
Sbjct: 108 PEHRRVEL 115
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 25.7 bits (55), Expect = 1.0
Identities = 7/35 (20%), Positives = 16/35 (45%)
Query: 38 IIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPI 72
+I GP GTGK+ + ++ + + + +
Sbjct: 5 VISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRT 39
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 165
Score = 25.6 bits (55), Expect = 1.0
Identities = 5/22 (22%), Positives = 11/22 (50%)
Query: 39 IQGPPGTGKTYVALRIVEGFLK 60
+ G +GKT + + V ++
Sbjct: 6 VVGYKHSGKTTLMEKWVAAAVR 27
>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain
{Adeno-associated virus 2, AAV2 [TaxId: 10804]}
Length = 267
Score = 25.3 bits (55), Expect = 1.2
Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 6/46 (13%)
Query: 19 GLNTIQF-EAYKAALTRE-----FAIIQGPPGTGKTYVALRIVEGF 58
G + + T++ + GP TGKT +A I
Sbjct: 83 GYDPQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128
>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain
{Lactobacillus casei [TaxId: 1582]}
Length = 176
Score = 25.3 bits (55), Expect = 1.2
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 38 IIQGPPGTGKTYVALRIVE 56
+I G G GK+ AL +V+
Sbjct: 18 LITGDSGVGKSETALELVQ 36
>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain
{Mycoplasma pneumoniae [TaxId: 2104]}
Length = 177
Score = 25.3 bits (55), Expect = 1.2
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 38 IIQGPPGTGKTYVALRIVE 56
++ G G GK+ AL ++
Sbjct: 19 LLTGRSGIGKSECALDLIN 37
>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor
Rho, ATPase domain {Escherichia coli [TaxId: 562]}
Length = 289
Score = 25.4 bits (55), Expect = 1.3
Identities = 12/52 (23%), Positives = 18/52 (34%)
Query: 39 IQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVEGVL 90
I PP GKT + I + N M I + + V+G +
Sbjct: 48 IVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEV 99
>d1kl9a1 a.60.14.1 (A:89-182) Eukaryotic initiation factor 2alpha,
eIF2alpha, domain 2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 94
Score = 24.8 bits (54), Expect = 1.3
Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 3 SILDAYDLSANVQEELGLNTIQ 24
SILD+ DL+ + +E L +N I
Sbjct: 72 SILDSLDLNEDEREVL-INNIN 92
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 25.3 bits (54), Expect = 1.4
Identities = 5/21 (23%), Positives = 12/21 (57%)
Query: 38 IIQGPPGTGKTYVALRIVEGF 58
++ GP G GK+ + ++ +
Sbjct: 4 VLSGPSGAGKSTLLKKLFQEH 24
>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain
{Staphylococcus xylosus [TaxId: 1288]}
Length = 169
Score = 24.9 bits (54), Expect = 1.4
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 38 IIQGPPGTGKTYVALRIVE 56
+I G G GK+ AL +++
Sbjct: 19 LITGDSGIGKSETALELIK 37
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895
{Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 25.3 bits (55), Expect = 1.4
Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 6/58 (10%)
Query: 3 SILDAYDLSANVQEELGLNTIQFEAYKAALTREFAIIQGPPGTGKTYVALRIVEGFLK 60
S L+ DLS + + L I K GP G GKT L+ + +LK
Sbjct: 1 SKLEIRDLSVGYDKPV-LERITMTIEKG----NVVNFHGPNGIGKT-TLLKTISTYLK 52
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli
[TaxId: 562]}
Length = 169
Score = 25.1 bits (53), Expect = 1.5
Identities = 7/44 (15%), Positives = 15/44 (34%), Gaps = 10/44 (22%)
Query: 38 IIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHA 81
+ GP G GK+ + ++LA+ ++
Sbjct: 6 FLVGPMGAGKSTIG----------RQLAQQLNMEFYDSDQEIEK 39
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 183
Score = 25.1 bits (53), Expect = 1.6
Identities = 6/22 (27%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 41 GPPGTGKTYVALRIVEGFLKNK 62
G +GK +A R ++ L +
Sbjct: 13 GYMNSGKDAIA-RALQVTLNQQ 33
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 24.9 bits (53), Expect = 1.9
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 38 IIQGPPGTGKTYVA 51
++ GPPG GKT +A
Sbjct: 39 LLAGPPGLGKTTLA 52
>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 214
Score = 24.9 bits (53), Expect = 1.9
Identities = 9/39 (23%), Positives = 16/39 (41%)
Query: 36 FAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILI 74
+I+G TGKT + + N +L ++ I
Sbjct: 5 LILIEGLDRTGKTTQCNILYKKLQPNCKLLKFPERSTRI 43
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase
(APS kinase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 24.6 bits (52), Expect = 2.2
Identities = 8/22 (36%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 41 GPPGTGKTYVALRIVEGFLKNK 62
G G GKT V+ +E +L
Sbjct: 26 GLSGAGKTTVS-MALEEYLVCH 46
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+
modules {Escherichia coli [TaxId: 562]}
Length = 268
Score = 24.6 bits (53), Expect = 2.2
Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 4/25 (16%)
Query: 37 AIIQGPPGTGKT----YVALRIVEG 57
++ G G GKT +A RIV+G
Sbjct: 42 PLLVGESGVGKTAIAEGLAWRIVQG 66
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 24.6 bits (52), Expect = 2.3
Identities = 6/26 (23%), Positives = 10/26 (38%), Gaps = 1/26 (3%)
Query: 34 REFAI-IQGPPGTGKTYVALRIVEGF 58
RE + + G GKT + +
Sbjct: 1 RELRLLMLGLDNAGKTTILKKFNGED 26
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia
chrysanthemi [TaxId: 556]}
Length = 170
Score = 24.5 bits (52), Expect = 2.4
Identities = 5/17 (29%), Positives = 7/17 (41%)
Query: 38 IIQGPPGTGKTYVALRI 54
+ G G G T V +
Sbjct: 6 FMVGARGCGMTTVGREL 22
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 165
Score = 24.6 bits (52), Expect = 2.6
Identities = 6/17 (35%), Positives = 12/17 (70%)
Query: 38 IIQGPPGTGKTYVALRI 54
++ G PG+GK+ + R+
Sbjct: 5 VLVGLPGSGKSTIGRRL 21
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}
Length = 364
Score = 24.4 bits (52), Expect = 2.8
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 10/38 (26%)
Query: 38 IIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIV 75
++ GP G+GKT +A + LA+++ PI I
Sbjct: 72 LLIGPTGSGKTLMA----------QTLAKHLDIPIAIS 99
>d1jf8a_ c.44.1.1 (A:) Arsenate reductase ArsC {Staphylococcus
aureus [TaxId: 1280]}
Length = 130
Score = 24.1 bits (51), Expect = 2.9
Identities = 7/20 (35%), Positives = 8/20 (40%)
Query: 72 ILIVCYTNHALDQFVEGVLK 91
I + N A Q EG K
Sbjct: 5 IYFISTGNSARSQMAEGWGK 24
>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1
ATP synthase {Cow (Bos taurus) [TaxId: 9913]}
Length = 285
Score = 24.4 bits (53), Expect = 3.0
Identities = 11/63 (17%), Positives = 18/63 (28%), Gaps = 8/63 (12%)
Query: 39 IQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVE--------GVL 90
I G TGKT +A+ + + + I + +
Sbjct: 73 IIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAM 132
Query: 91 KYT 93
KYT
Sbjct: 133 KYT 135
>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 208
Score = 24.3 bits (51), Expect = 3.0
Identities = 7/36 (19%), Positives = 13/36 (36%)
Query: 36 FAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGP 71
I+G G GK + ++ F ++ P
Sbjct: 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFP 37
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 24.0 bits (51), Expect = 3.1
Identities = 3/21 (14%), Positives = 10/21 (47%)
Query: 38 IIQGPPGTGKTYVALRIVEGF 58
++ G G G+ ++ ++
Sbjct: 7 VLLGAHGVGRRHIKNTLITKH 27
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 24.2 bits (51), Expect = 3.2
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 38 IIQGPPGTGKTYVALRIVE 56
++ GP GK+ V + E
Sbjct: 6 VLSGPSAVGKSTVVRCLRE 24
>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1
ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 276
Score = 23.9 bits (52), Expect = 3.6
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 39 IQGPPGTGKTYVALRIVEGFLKNKE 63
+ G G GKT + + ++ K
Sbjct: 73 LFGGAGVGKTVLIMELINNVAKAHG 97
>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli
[TaxId: 562]}
Length = 210
Score = 24.1 bits (51), Expect = 3.6
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 36 FAIIQGPPGTGKTYVALRIVEGFLKNK 62
+ +I+G G GKT +VE L+
Sbjct: 4 YIVIEGLEGAGKTTARNVVVE-TLEQL 29
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein
MetN {Escherichia coli [TaxId: 562]}
Length = 240
Score = 24.1 bits (52), Expect = 3.8
Identities = 6/26 (23%), Positives = 11/26 (42%), Gaps = 1/26 (3%)
Query: 35 EFAIIQGPPGTGKTYVALRIVEGFLK 60
+ + G G GK+ +R V +
Sbjct: 32 QIYGVIGASGAGKS-TLIRCVNLLER 56
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 230
Score = 24.0 bits (52), Expect = 3.9
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 35 EFAIIQGPPGTGKTYVALRIVEGFLK 60
EF I GP G+GK+ L I+ K
Sbjct: 32 EFVSIMGPSGSGKS-TMLNIIGCLDK 56
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Escherichia coli [TaxId: 562]}
Length = 256
Score = 23.6 bits (51), Expect = 4.4
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 37 AIIQGPPGTGKTYVA 51
++ GPPGTGKT +A
Sbjct: 48 VLMVGPPGTGKTLLA 62
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter
jejuni [TaxId: 197]}
Length = 161
Score = 23.3 bits (49), Expect = 5.3
Identities = 5/17 (29%), Positives = 10/17 (58%)
Query: 38 IIQGPPGTGKTYVALRI 54
+ G G+GK+ +A +
Sbjct: 4 VFIGFMGSGKSTLARAL 20
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS
kinase) {Fungus (Penicillium chrysogenum) [TaxId:
5076]}
Length = 208
Score = 23.6 bits (50), Expect = 5.4
Identities = 8/45 (17%), Positives = 19/45 (42%)
Query: 39 IQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALD 83
+ G +GK+ +A+ + ++++ + Y I N L
Sbjct: 29 LTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNKDLG 73
>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 237
Score = 23.5 bits (49), Expect = 5.7
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 32 LTREFAIIQGPPGTGKTYVAL 52
+ R +I+ G GTGKT V
Sbjct: 1 MGRIISIVSGKGGTGKTTVTA 21
>d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme
UvrB {Thermus thermophilus [TaxId: 274]}
Length = 408
Score = 23.7 bits (50), Expect = 6.0
Identities = 9/49 (18%), Positives = 15/49 (30%), Gaps = 10/49 (20%)
Query: 39 IQGPPGTGKTYVALRIVEGFLKNKELARYMSGPILIVCYTNHALDQFVE 87
+ G GTGKT ++ + P L++ Q
Sbjct: 33 LLGATGTGKTVTM----------AKVIEALGRPALVLAPNKILAAQLAA 71
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
562]}
Length = 205
Score = 23.3 bits (49), Expect = 7.3
Identities = 5/19 (26%), Positives = 11/19 (57%)
Query: 38 IIQGPPGTGKTYVALRIVE 56
I+ P G GK+ + +++
Sbjct: 6 IVSAPSGAGKSSLIQALLK 24
>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 197
Score = 23.1 bits (48), Expect = 8.3
Identities = 7/37 (18%), Positives = 12/37 (32%)
Query: 36 FAIIQGPPGTGKTYVALRIVEGFLKNKELARYMSGPI 72
+I+G G+GKT + L +
Sbjct: 11 TVLIEGNIGSGKTTYLNHFEKYKNDICLLTEPVEKWR 47
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.137 0.386
Gapped
Lambda K H
0.267 0.0443 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 341,368
Number of extensions: 13921
Number of successful extensions: 174
Number of sequences better than 10.0: 1
Number of HSP's gapped: 174
Number of HSP's successfully gapped: 120
Length of query: 97
Length of database: 2,407,596
Length adjustment: 59
Effective length of query: 38
Effective length of database: 1,597,526
Effective search space: 60705988
Effective search space used: 60705988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.6 bits)