BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16286
(92 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8R151|ZNFX1_MOUSE NFX1-type zinc finger-containing protein 1 OS=Mus musculus GN=Znfx1
PE=2 SV=3
Length = 1909
Score = 62.0 bits (149), Expect = 1e-09, Method: Composition-based stats.
Identities = 34/81 (41%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 6 NNVHNNVGFLKTVNRVCVALSRAKQGLFIMGNMKCLSADSQLWQEIKNKLVTRRSINESF 65
+N VGFL+ NR+CVALSRAK+G++ +GNM+ L A LW I + L I S
Sbjct: 1195 SNQEGKVGFLQIPNRICVALSRAKKGMYCIGNMQML-AKVPLWSRIIHTLRENNQIGPSL 1253
Query: 66 RLQCNKHRAV-TIIRAVEDFE 85
RL C H T++ DF+
Sbjct: 1254 RLCCQNHPETHTLVSKASDFQ 1274
>sp|Q9P2E3|ZNFX1_HUMAN NFX1-type zinc finger-containing protein 1 OS=Homo sapiens GN=ZNFX1
PE=1 SV=2
Length = 1918
Score = 60.8 bits (146), Expect = 3e-09, Method: Composition-based stats.
Identities = 33/81 (40%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 6 NNVHNNVGFLKTVNRVCVALSRAKQGLFIMGNMKCLSADSQLWQEIKNKLVTRRSINESF 65
+N VGFL+ NR+CVALSRAK+G++ +GNM+ L A LW +I + L I
Sbjct: 1202 SNQEGKVGFLQISNRICVALSRAKKGMYCIGNMQML-AKVPLWSKIIHTLRENNQIGPML 1260
Query: 66 RLQCNKHRAV-TIIRAVEDFE 85
RL C H T++ DF+
Sbjct: 1261 RLCCQNHPETHTLVSKASDFQ 1281
>sp|O74465|HRR1_SCHPO Helicase required for RNAi-mediated heterochromatin assembly 1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=hrr1 PE=1 SV=2
Length = 999
Score = 55.8 bits (133), Expect = 7e-08, Method: Composition-based stats.
Identities = 25/56 (44%), Positives = 37/56 (66%)
Query: 6 NNVHNNVGFLKTVNRVCVALSRAKQGLFIMGNMKCLSADSQLWQEIKNKLVTRRSI 61
NN VGFL + +RVCV+LSRA++GLFI GN + ++ + LW + N L+ +I
Sbjct: 910 NNDRTEVGFLSSPHRVCVSLSRARRGLFIFGNAQLVAESNPLWWDAINTLMNDETI 965
>sp|P32644|ECM32_YEAST Putative ATP-dependent RNA helicase ECM32 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=ECM32 PE=1 SV=1
Length = 1121
Score = 45.8 bits (107), Expect = 8e-05, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 28/45 (62%)
Query: 6 NNVHNNVGFLKTVNRVCVALSRAKQGLFIMGNMKCLSADSQLWQE 50
NN N +GFL+ R+ VAL+RAK GL ++GN L LW++
Sbjct: 1059 NNTENKIGFLRDKRRLNVALTRAKHGLIVVGNKNVLRKGDPLWKD 1103
>sp|Q92355|SEN1_SCHPO Helicase sen1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=sen1 PE=1 SV=1
Length = 1687
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Query: 10 NNVGFLKTVNRVCVALSRAKQGLFIMGNMKCLSADSQLWQEIKNKLVTRRSINESFRLQC 69
+ +GFL+ R+ VAL+RA+ L I+GNM+ L D LW + + ++R+ + ES +
Sbjct: 1589 HGIGFLRDFRRLNVALTRARSSLLIIGNMETLKTDD-LWGSLVDDALSRKLV-ESPHID- 1645
Query: 70 NKHRAVTIIRAVE 82
++ R +TI R E
Sbjct: 1646 SEGRLITISRTSE 1658
>sp|Q9VYS3|RENT1_DROME Regulator of nonsense transcripts 1 homolog OS=Drosophila
melanogaster GN=Upf1 PE=1 SV=2
Length = 1180
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 1 MAGSTNNVHNNVGFLKTVNRVCVALSRAKQGLFIMGNMKCLSADSQLWQEIKNKLVTRRS 60
M+ +N +GFL R+ VAL+RAK G+ I+GN K L A QLW + N R+
Sbjct: 819 MSCVRSNERQGIGFLNDPRRLNVALTRAKFGIIIVGNPKVL-AKQQLWNHLLNFYKDRKV 877
Query: 61 INE 63
+ E
Sbjct: 878 LVE 880
>sp|Q54I89|RENT1_DICDI Regulator of nonsense transcripts 1 OS=Dictyostelium discoideum
GN=upf1 PE=3 SV=1
Length = 1331
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 5/55 (9%)
Query: 6 NNVHNNVGFLKTVNRVCVALSRAKQGLFIMGNMKCLSADSQLWQEI----KNKLV 56
+N + +GFL+ R+ VAL+RA+ GL I+GN K LS D LW + KNK V
Sbjct: 913 SNDYQGIGFLQDPRRLNVALTRARFGLIILGNAKVLSKDP-LWNSLISHFKNKNV 966
>sp|Q7Z333|SETX_HUMAN Probable helicase senataxin OS=Homo sapiens GN=SETX PE=1 SV=4
Length = 2677
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 47/77 (61%), Gaps = 8/77 (10%)
Query: 6 NNVHNNVGFLKTVNRVCVALSRAKQGLFIMGNMKCLSADSQLWQEIKNKLVTRRSINESF 65
N++ ++GFL ++ R+ V ++RAK LFI+G+++ L ++Q W ++ R +I ++
Sbjct: 2393 NSIQGSIGFLASLQRLNVTITRAKYSLFILGHLRTL-MENQHWNQLIQDAQKRGAIIKT- 2450
Query: 66 RLQCNK---HRAVTIIR 79
C+K H AV I++
Sbjct: 2451 ---CDKNYRHDAVKILK 2464
>sp|Q98TR3|RENT1_TAKRU Putative regulator of nonsense transcripts 1 OS=Takifugu rubripes
GN=rent1 PE=3 SV=1
Length = 1097
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 7 NVHNNVGFLKTVNRVCVALSRAKQGLFIMGNMKCLSADSQLWQEIKNKLVTRRSINE 63
N H +GFL R+ VAL+RAK G+ I+GN K LS LW + N ++ + E
Sbjct: 825 NEHQGIGFLNDPRRLNVALTRAKYGVIIVGNPKALSKQP-LWNNLLNNYKEQKVLVE 880
>sp|Q92900|RENT1_HUMAN Regulator of nonsense transcripts 1 OS=Homo sapiens GN=UPF1 PE=1
SV=2
Length = 1129
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 7 NVHNNVGFLKTVNRVCVALSRAKQGLFIMGNMKCLSADSQLWQEIKN 53
N H +GFL R+ VAL+RA+ G+ I+GN K LS LW + N
Sbjct: 856 NEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQP-LWNHLLN 901
>sp|Q00416|SEN1_YEAST Helicase SEN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SEN1 PE=1 SV=2
Length = 2231
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 34/46 (73%), Gaps = 1/46 (2%)
Query: 6 NNVHNNVGFLKTVNRVCVALSRAKQGLFIMGNMKCLSADSQLWQEI 51
++ ++VGFLK R+ VAL+RAK ++++G+ + L A S+LW+++
Sbjct: 1799 DDTKSSVGFLKDFRRMNVALTRAKTSIWVLGHQRSL-AKSKLWRDL 1843
>sp|O76512|RENT1_CAEEL Regulator of nonsense transcripts 1 OS=Caenorhabditis elegans
GN=smg-2 PE=1 SV=1
Length = 1069
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 12 VGFLKTVNRVCVALSRAKQGLFIMGNMKCLSADSQLWQEIKNKLVTRRSINE 63
+GFL R+ VA++RAK GL ++GN K L A LW E+ N ++ + E
Sbjct: 824 IGFLSDPRRLNVAITRAKYGLVLVGNAKVL-ARHDLWHELINHYKSKEMLYE 874
>sp|Q9FJR0|RENT1_ARATH Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana
GN=UPF1 PE=1 SV=2
Length = 1254
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 6 NNVHNNVGFLKTVNRVCVALSRAKQGLFIMGNMKCLSADSQLW 48
+N H +GFL R+ VAL+RA+ G+ I+GN K LS LW
Sbjct: 864 SNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQP-LW 905
>sp|Q9EPU0|RENT1_MOUSE Regulator of nonsense transcripts 1 OS=Mus musculus GN=Upf1 PE=1
SV=2
Length = 1124
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 7 NVHNNVGFLKTVNRVCVALSRAKQGLFIMGNMKCLSADSQLWQEI 51
N H +GFL R+ VAL+RA+ G+ I+GN K LS LW +
Sbjct: 851 NEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQP-LWNHL 894
>sp|Q6ZU11|YD002_HUMAN Uncharacterized protein FLJ44066 OS=Homo sapiens PE=2 SV=1
Length = 926
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 12 VGFLKTVNRVCVALSRAKQGLFIMGNMKCLSADSQLWQEI 51
VGF+ + R+ VAL+R K+ L I+GN+ CL + QLW +
Sbjct: 836 VGFIDSEKRMNVALTRGKRHLLIVGNLACLRKN-QLWGRV 874
>sp|A2AKX3|SETX_MOUSE Probable helicase senataxin OS=Mus musculus GN=Setx PE=2 SV=1
Length = 2646
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 8 VHNNVGFLKTVNRVCVALSRAKQGLFIMGNMKCLSADSQLWQEIKNKLVTRRSI 61
V ++GFL ++ R+ V ++RAK LFI+G+++ L ++Q W E+ R +I
Sbjct: 2371 VQGSIGFLASLQRLNVTITRAKYSLFILGHLRTL-MENQHWYELIQDAQKRGAI 2423
>sp|Q9HEH1|RENT1_NEUCR Regulator of nonsense transcripts 1 homolog OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=2E4.130 PE=3 SV=1
Length = 1093
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 6 NNVHNNVGFLKTVNRVCVALSRAKQGLFIMGNMKCLSADSQLWQEI 51
+N + +GFL R+ VAL+RAK GL I+GN K L +LW +
Sbjct: 829 SNENQGIGFLSDPRRLNVALTRAKYGLVIIGNPKVL-CKHELWHHL 873
>sp|Q86AS0|Y4399_DICDI Probable helicase DDB_G0274399 OS=Dictyostelium discoideum
GN=DDB_G0274399 PE=3 SV=1
Length = 967
Score = 38.5 bits (88), Expect = 0.011, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 12 VGFLKTVNRVCVALSRAKQGLFIMGNMKCLSADSQLWQEI 51
+GFL V R+ VAL+R + L I+GN K LS + W E+
Sbjct: 798 IGFLSDVRRMNVALTRPRSSLLILGNTKALSINKD-WNEL 836
>sp|P30771|NAM7_YEAST ATP-dependent helicase NAM7 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=NAM7 PE=1 SV=1
Length = 971
Score = 37.7 bits (86), Expect = 0.021, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 7 NVHNNVGFLKTVNRVCVALSRAKQGLFIMGNMKCLSADSQLWQEI 51
N +GFL+ R+ V L+RAK GL I+GN + L+ ++ LW +
Sbjct: 781 NEQQAIGFLRDPRRLNVGLTRAKYGLVILGNPRSLARNT-LWNHL 824
>sp|Q09820|RENT1_SCHPO ATP-dependent helicase upf1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=upf1 PE=3 SV=2
Length = 925
Score = 37.7 bits (86), Expect = 0.023, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 9 HNNVGFLKTVNRVCVALSRAKQGLFIMGNMKCLSADSQLW 48
H +GF+ R+ VAL+RAK G+ ++GN K L A LW
Sbjct: 775 HQGIGFVNDPRRLNVALTRAKYGVIVLGNPKVL-AKHALW 813
>sp|Q57568|Y104_METJA Uncharacterized ATP-dependent helicase MJ0104 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0104 PE=3 SV=1
Length = 663
Score = 36.6 bits (83), Expect = 0.043, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 10/58 (17%)
Query: 11 NVGFLKTVNRVCVALSRAKQGLFIMGNMKCLSAD----------SQLWQEIKNKLVTR 58
N GFLK + R+ VA++RAK+ L ++GN L D + +E KNK++ +
Sbjct: 606 NFGFLKDLRRLNVAITRAKRKLILIGNENLLKQDKVYNEMIKWAKSVEEEHKNKIIQK 663
>sp|O94387|YGSA_SCHPO Uncharacterized ATP-dependent helicase C29A10.10c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC29A10.10c PE=3 SV=1
Length = 1944
Score = 36.2 bits (82), Expect = 0.053, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 31/48 (64%)
Query: 6 NNVHNNVGFLKTVNRVCVALSRAKQGLFIMGNMKCLSADSQLWQEIKN 53
+++ +GFL+ + R+ VAL+RAK L+I+GN K L + + I++
Sbjct: 1723 SSMSGGIGFLQDLRRLNVALTRAKSSLYIVGNSKPLMQEDIFYSLIED 1770
>sp|Q1LXK4|M10B1_DANRE Putative helicase mov-10-B.1 OS=Danio rerio GN=mov10b.1 PE=2 SV=2
Length = 1013
Score = 36.2 bits (82), Expect = 0.062, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 11 NVGFLKTVNRVCVALSRAKQGLFIMGNMKCLSADSQLWQEIKNKLVTRR 59
N+GFLK R VA++RAK L ++GN L D ++W N + R
Sbjct: 916 NIGFLKNEKRFNVAVTRAKALLIMVGNPIILRTD-EIWGRFMNYCIQER 963
>sp|Q5ZKD7|MOV10_CHICK Putative helicase MOV-10 OS=Gallus gallus GN=MOV10 PE=2 SV=1
Length = 967
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 17/33 (51%), Positives = 22/33 (66%)
Query: 12 VGFLKTVNRVCVALSRAKQGLFIMGNMKCLSAD 44
+GFLK R+ VAL+RAK L ++GN LS D
Sbjct: 893 LGFLKNPKRLNVALTRAKALLIVVGNAAVLSKD 925
>sp|Q1LXK5|M10B2_DANRE Putative helicase mov-10-B.2 OS=Danio rerio GN=mov10b.2 PE=3 SV=1
Length = 1015
Score = 33.1 bits (74), Expect = 0.51, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 11 NVGFLKTVNRVCVALSRAKQGLFIMGNMKCLSAD 44
N+GFLK R VA++RAK L ++GN L D
Sbjct: 921 NIGFLKNEKRFNVAVTRAKSLLIMVGNPMILRTD 954
>sp|Q09449|YQ12_CAEEL Uncharacterized ATP-dependent helicase C05C10.2 OS=Caenorhabditis
elegans GN=C05C10.2 PE=2 SV=1
Length = 1551
Score = 32.7 bits (73), Expect = 0.59, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 14 FLKTVNRVCVALSRAKQGLFIMGNMKCLSADSQLWQEIKNKL 55
F++ NR+ VA+SRAKQ I+G++ L + W I NK+
Sbjct: 1420 FMQLSNRLNVAMSRAKQVTIIIGHLDGLRR-ANYWSTIVNKI 1460
>sp|B6SFA4|MAA3_ARATH Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana GN=MAA3 PE=2
SV=1
Length = 818
Score = 32.7 bits (73), Expect = 0.70, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 7 NVHNNVGFLKTVNRVCVALSRAKQGLFIMGNMKCLSADSQLWQEIKNKLVTRRSINESFR 66
N + +GFL R+ V ++RAK + ++G+ L +D LW KN + + N F+
Sbjct: 700 NENGQIGFLSNSRRMNVGITRAKSSVLVVGSAATLKSDP-LW---KNLIESAEQRNRLFK 755
Query: 67 L 67
+
Sbjct: 756 V 756
>sp|Q03W49|ADDA_LEUMM ATP-dependent helicase/nuclease subunit A OS=Leuconostoc
mesenteroides subsp. mesenteroides (strain ATCC 8293 /
NCDO 523) GN=addA PE=3 SV=1
Length = 1230
Score = 32.7 bits (73), Expect = 0.73, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 7/61 (11%)
Query: 23 VALSRAKQGLFIMGNMKCL-SADSQ----LWQEIKNKLVTRRSINESFRLQCNKHRAVTI 77
VAL+RA+Q L+I+G++K A +Q LWQ+ KN + + E RLQ + + TI
Sbjct: 853 VALTRAEQQLYIVGSVKVKGEAGNQSLKSLWQQSKN--ANGQFLPEFLRLQADSYLKWTI 910
Query: 78 I 78
+
Sbjct: 911 M 911
>sp|Q9HCE1|MOV10_HUMAN Putative helicase MOV-10 OS=Homo sapiens GN=MOV10 PE=1 SV=2
Length = 1003
Score = 32.3 bits (72), Expect = 0.83, Method: Composition-based stats.
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 11 NVGFLKTVNRVCVALSRAKQGLFIMGNMKCLSAD 44
N+GFLK R VA++RAK L I+GN L D
Sbjct: 895 NLGFLKNPKRFNVAVTRAKALLIIVGNPLLLGHD 928
>sp|P0C6X8|R1AB_CVM2 Replicase polyprotein 1ab OS=Murine coronavirus (strain 2) GN=rep
PE=3 SV=1
Length = 7124
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 7/52 (13%)
Query: 18 VNRVCVALSRAKQGLFIMGNMKCLSADSQLWQEIKNKLVTRRSINESFRLQC 69
VNR VA++RAK+G+ C+ + QL++ + +T IN RLQC
Sbjct: 5887 VNRFNVAITRAKKGIL------CVMSSMQLFESLNFSTLTLDKINNP-RLQC 5931
>sp|P23249|MOV10_MOUSE Putative helicase MOV-10 OS=Mus musculus GN=Mov10 PE=1 SV=2
Length = 1004
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 11 NVGFLKTVNRVCVALSRAKQGLFIMGNMKCLSAD 44
N+GFLK R VA++RAK L ++GN L D
Sbjct: 896 NLGFLKNPKRFNVAVTRAKALLIVVGNPLLLGHD 929
>sp|Q0V8H6|MOV10_BOVIN Putative helicase MOV-10 OS=Bos taurus GN=MOV10 PE=2 SV=1
Length = 1003
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 11 NVGFLKTVNRVCVALSRAKQGLFIMGNMKCLSAD 44
N+GFLK R VA++RAK L ++GN L D
Sbjct: 895 NLGFLKNPKRFNVAVTRAKALLIVVGNPLLLGHD 928
>sp|P0C6X9|R1AB_CVMA5 Replicase polyprotein 1ab OS=Murine coronavirus (strain A59) GN=rep
PE=1 SV=1
Length = 7176
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 7/52 (13%)
Query: 18 VNRVCVALSRAKQGLFIMGNMKCLSADSQLWQEIKNKLVTRRSINESFRLQC 69
VNR VA++RAK+G+ C+ + QL++ + +T IN RLQC
Sbjct: 5939 VNRFNVAITRAKKGIL------CVMSSMQLFESLNFTTLTLDKINNP-RLQC 5983
>sp|Q6J5K9|ARMI_DROME Probable RNA helicase armi OS=Drosophila melanogaster GN=armi PE=2
SV=3
Length = 1274
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 11 NVGFLKTVNRVCVALSRAKQGLFIMGNMKCLSADSQLWQEI 51
++GF++ R+ VA+SRA+ + I GN L+ D + W+++
Sbjct: 1191 SLGFVRCSKRLNVAVSRARAMMIIFGNPHLLAVD-ECWRQL 1230
>sp|B7GM51|ADDA_ANOFW ATP-dependent helicase/nuclease subunit A OS=Anoxybacillus
flavithermus (strain DSM 21510 / WK1) GN=addA PE=3 SV=1
Length = 1209
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 23 VALSRAKQGLFIMGNMKCLSADSQLWQEI 51
VAL+RAK+ L+I+ K + A + WQE+
Sbjct: 869 VALTRAKEKLYIVCTAKDMEAKKKKWQEV 897
>sp|P0C6X3|R1AB_CVHN2 Replicase polyprotein 1ab OS=Human coronavirus HKU1 (isolate N2)
GN=rep PE=3 SV=1
Length = 7152
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
Query: 18 VNRVCVALSRAKQGLF-IMGNMKCLSADSQL---WQEIKNKLVTRRSINESFRLQCNKH 72
VNR VA++RAK+G+F +M NM+ + + + +I+N+ ++R + C+K+
Sbjct: 5912 VNRFNVAITRAKKGIFCVMSNMQLFESLNFITLPLDKIQNQTLSRLHCTTNLFKDCSKN 5970
>sp|P34243|HCS1_YEAST DNA polymerase alpha-associated DNA helicase A OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HCS1 PE=1
SV=1
Length = 683
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 22/30 (73%)
Query: 12 VGFLKTVNRVCVALSRAKQGLFIMGNMKCL 41
VGFLK R+ VA++R ++ L ++GN++ L
Sbjct: 624 VGFLKEERRLNVAMTRPRRQLVVVGNIEVL 653
>sp|Q8CFQ3|AQR_MOUSE Intron-binding protein aquarius OS=Mus musculus GN=Aqr PE=2 SV=2
Length = 1481
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 12 VGFLKTVNRVCVALSRAKQGLFIMGNM 38
VG L+ V R+ VA+SRA+ GL+I +
Sbjct: 1285 VGHLRDVRRLVVAMSRARLGLYIFARV 1311
>sp|O60306|AQR_HUMAN Intron-binding protein aquarius OS=Homo sapiens GN=AQR PE=1 SV=4
Length = 1485
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 12 VGFLKTVNRVCVALSRAKQGLFIMGNM 38
VG L+ V R+ VA+SRA+ GL+I +
Sbjct: 1281 VGHLRDVRRLVVAMSRARLGLYIFARV 1307
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.133 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,413,156
Number of Sequences: 539616
Number of extensions: 824739
Number of successful extensions: 2447
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2413
Number of HSP's gapped (non-prelim): 41
length of query: 92
length of database: 191,569,459
effective HSP length: 62
effective length of query: 30
effective length of database: 158,113,267
effective search space: 4743398010
effective search space used: 4743398010
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)