Query psy16286
Match_columns 92
No_of_seqs 102 out of 1073
Neff 6.6
Searched_HMMs 29240
Date Fri Aug 16 17:31:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16286.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16286hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b3f_X DNA-binding protein smu 99.7 3.7E-19 1.3E-23 140.8 3.1 64 1-65 575-638 (646)
2 2gk6_A Regulator of nonsense t 99.6 1.2E-15 4.1E-20 120.7 3.2 63 1-64 549-611 (624)
3 2xzl_A ATP-dependent helicase 99.5 2.4E-15 8.2E-20 122.6 2.1 63 1-64 727-789 (802)
4 2wjy_A Regulator of nonsense t 99.5 5.5E-15 1.9E-19 120.5 3.0 63 1-64 725-787 (800)
5 3vkw_A Replicase large subunit 95.0 0.017 5.9E-07 44.6 3.5 51 1-57 385-435 (446)
6 3e1s_A Exodeoxyribonuclease V, 94.2 0.008 2.7E-07 47.3 -0.2 29 14-42 517-545 (574)
7 3dmn_A Putative DNA helicase; 90.9 0.038 1.3E-06 36.7 -0.3 23 15-37 131-153 (174)
8 1w36_D RECD, exodeoxyribonucle 84.2 0.22 7.4E-06 39.2 0.2 26 16-41 561-586 (608)
9 3u4q_A ATP-dependent helicase/ 84.2 0.25 8.4E-06 41.9 0.5 28 23-50 869-896 (1232)
10 3upu_A ATP-dependent DNA helic 67.1 0.79 2.7E-05 34.4 -0.9 17 19-35 443-459 (459)
11 1uaa_A REP helicase, protein ( 64.1 1.8 6.1E-05 33.9 0.6 22 18-39 592-614 (673)
12 1w36_B RECB, exodeoxyribonucle 62.4 2.1 7.1E-05 36.1 0.7 15 21-35 802-816 (1180)
13 1pjr_A PCRA; DNA repair, DNA r 59.7 2.5 8.6E-05 33.7 0.7 17 21-37 604-620 (724)
14 3lfu_A DNA helicase II; SF1 he 51.4 3.8 0.00013 31.5 0.5 21 17-37 594-615 (647)
15 1vje_A Autoinducer-2 productio 46.9 23 0.00078 23.9 3.7 51 20-71 74-127 (166)
16 1j6x_A Autoinducer-2 productio 43.4 24 0.00081 23.7 3.3 51 20-71 72-124 (160)
17 1j98_A Autoinducer-2 productio 38.4 32 0.0011 23.0 3.4 51 20-71 76-128 (157)
18 1ng7_A Poliovirus 3A-N, genome 36.1 22 0.00074 20.1 1.9 17 49-65 32-48 (60)
19 1j6w_A Autoinducer-2 productio 22.9 66 0.0023 21.8 2.9 51 20-71 75-130 (175)
20 4au1_A Precorrin-8X methylmuta 20.2 62 0.0021 22.8 2.4 35 30-70 149-183 (229)
No 1
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=99.74 E-value=3.7e-19 Score=140.78 Aligned_cols=64 Identities=17% Similarity=0.367 Sum_probs=60.5
Q ss_pred CeeeeeCCCCCcCCccCCccceeeccccceeEEEEccchhhhhccHHHHHHHHHHHhCCcccccc
Q psy16286 1 MAGSTNNVHNNVGFLKTVNRVCVALSRAKQGLFIMGNMKCLSADSQLWQEIKNKLVTRRSINESF 65 (92)
Q Consensus 1 ~S~VRsn~~~~~GFl~~~~RinVAlSRAk~gl~IiGn~~~L~~~~~~w~~ll~~~~~~~~i~~~~ 65 (92)
+|+||||..+.+|||.+++|+|||+||||++||||||..+| +.++.|++++++++++|++....
T Consensus 575 ~S~vrsn~~~~iGFl~~~rRlNVAlTRAk~~liivGn~~~l-~~~~~~~~li~~~~~~g~~~~~~ 638 (646)
T 4b3f_X 575 LSFVRSNRKGEVGFLAEDRRINVAVTRARRHVAVICDSRTV-NNHAFLKTLVEYFTQHGEVRTAF 638 (646)
T ss_dssp EECCCCCTTCCCCSTTCHHHHHHHHHTEEEEEEEEECHHHH-TTSHHHHHHHHHHHHSSEEEEGG
T ss_pred EEeccCCCCCCccccCCcCcEEeEhhhhhCeEEEEEchHHh-cCCHHHHHHHHHHHHCCCEeeHH
Confidence 59999999999999999999999999999999999999999 78999999999999999987654
No 2
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=99.55 E-value=1.2e-15 Score=120.65 Aligned_cols=63 Identities=33% Similarity=0.601 Sum_probs=53.5
Q ss_pred CeeeeeCCCCCcCCccCCccceeeccccceeEEEEccchhhhhccHHHHHHHHHHHhCCccccc
Q psy16286 1 MAGSTNNVHNNVGFLKTVNRVCVALSRAKQGLFIMGNMKCLSADSQLWQEIKNKLVTRRSINES 64 (92)
Q Consensus 1 ~S~VRsn~~~~~GFl~~~~RinVAlSRAk~gl~IiGn~~~L~~~~~~w~~ll~~~~~~~~i~~~ 64 (92)
+|+||++..+.+||+.+.+|+|||+||||++||||||..+| +.++.|++++++++++|++.+.
T Consensus 549 ls~vrs~~~~~~gfl~~~~rlnVAlTRAk~~L~ivg~~~~l-~~~~~~~~li~~~~~~~~~~~~ 611 (624)
T 2gk6_A 549 LSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKAL-SKQPLWNHLLNYYKEQKVLVEG 611 (624)
T ss_dssp EEECC------CCTTTCHHHHHHHTTSEEEEEEEEECHHHH-TTSHHHHHHHHHHHHTTCCCCS
T ss_pred EEeecCCCCCCccccCCcceeeeehhhhhCcEEEEECHHHH-ccChHHHHHHHHHHHCCCEEeC
Confidence 58999998888999999999999999999999999999999 6799999999999999998543
No 3
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.51 E-value=2.4e-15 Score=122.57 Aligned_cols=63 Identities=32% Similarity=0.571 Sum_probs=59.2
Q ss_pred CeeeeeCCCCCcCCccCCccceeeccccceeEEEEccchhhhhccHHHHHHHHHHHhCCccccc
Q psy16286 1 MAGSTNNVHNNVGFLKTVNRVCVALSRAKQGLFIMGNMKCLSADSQLWQEIKNKLVTRRSINES 64 (92)
Q Consensus 1 ~S~VRsn~~~~~GFl~~~~RinVAlSRAk~gl~IiGn~~~L~~~~~~w~~ll~~~~~~~~i~~~ 64 (92)
+|+||+|..+.+||+.+.+|+|||+||||++|||+||..+| ..++.|++++++++++|++.+.
T Consensus 727 lS~vrs~~~~~~gfl~d~rrLNVAlTRAk~~LiIvg~~~~l-~~~~~w~~ll~~~~~~~~~~~~ 789 (802)
T 2xzl_A 727 LSCVRANEQQAIGFLRDPRRLNVGLTRAKYGLVILGNPRSL-ARNTLWNHLLIHFREKGCLVEG 789 (802)
T ss_dssp EECCCCCTTCCCGGGGCHHHHHHHHSSEEEEEEEEECHHHH-TTSHHHHHHHHHHHHHTCEEEE
T ss_pred EEeccCCCCCCcccccCccceeeeHhhhhCeEEEEECHHHh-ccChHHHHHHHHHHHcCCeecC
Confidence 58999998889999999999999999999999999999999 7799999999999999998654
No 4
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=99.50 E-value=5.5e-15 Score=120.48 Aligned_cols=63 Identities=33% Similarity=0.601 Sum_probs=58.8
Q ss_pred CeeeeeCCCCCcCCccCCccceeeccccceeEEEEccchhhhhccHHHHHHHHHHHhCCccccc
Q psy16286 1 MAGSTNNVHNNVGFLKTVNRVCVALSRAKQGLFIMGNMKCLSADSQLWQEIKNKLVTRRSINES 64 (92)
Q Consensus 1 ~S~VRsn~~~~~GFl~~~~RinVAlSRAk~gl~IiGn~~~L~~~~~~w~~ll~~~~~~~~i~~~ 64 (92)
+|+||++..+.+||+.+.+|+|||+||||++|+||||..+| ..+++|++++++++++|++.+.
T Consensus 725 lS~vrs~~~~~~gfl~d~rrLNVAlTRAk~~LiIvG~~~~l-~~~~~w~~ll~~~~~~~~~~~~ 787 (800)
T 2wjy_A 725 LSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKAL-SKQPLWNHLLNYYKEQKVLVEG 787 (800)
T ss_dssp EECCCCSCCCCCGGGTCHHHHHHHHTSEEEEEEEEECHHHH-TSSHHHHHHHHHHHHTTCEEES
T ss_pred EEecCCCCccccccccCcchhhhhHHhhhccEEEEECHHHh-ccCHHHHHHHHHHHHCCCEEeC
Confidence 58999998888999999999999999999999999999999 7899999999999999998543
No 5
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=94.99 E-value=0.017 Score=44.63 Aligned_cols=51 Identities=16% Similarity=0.009 Sum_probs=37.6
Q ss_pred CeeeeeCCCCCcCCccCCccceeeccccceeEEEEccchhhhhccHHHHHHHHHHHh
Q psy16286 1 MAGSTNNVHNNVGFLKTVNRVCVALSRAKQGLFIMGNMKCLSADSQLWQEIKNKLVT 57 (92)
Q Consensus 1 ~S~VRsn~~~~~GFl~~~~RinVAlSRAk~gl~IiGn~~~L~~~~~~w~~ll~~~~~ 57 (92)
+++||.+......|..+..++.|||||||++|.++- . .++.|.+.|..+..
T Consensus 385 Vtlvr~~~~~~~l~~~~~~~~~VALTRh~~~L~~~t----v--~~D~~~~~i~~~~~ 435 (446)
T 3vkw_A 385 VSLVRLTPTPVSIIARDSPHVLVSLSRHTKSLKYYT----V--VMDPLVSIIRDLER 435 (446)
T ss_dssp EEEEECCCSCCTTCSTTCHHHHHHHSSEEEEEEEEE----S--SCCHHHHHHHHHHH
T ss_pred EEEEECCCCCcccccCCccceEEEeecCCCEEEEEE----e--cCChHHHHHHHhhh
Confidence 367888654444455688899999999999999984 2 25667777777765
No 6
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=94.16 E-value=0.008 Score=47.28 Aligned_cols=29 Identities=28% Similarity=0.368 Sum_probs=25.5
Q ss_pred CccCCccceeeccccceeEEEEccchhhh
Q psy16286 14 FLKTVNRVCVALSRAKQGLFIMGNMKCLS 42 (92)
Q Consensus 14 Fl~~~~RinVAlSRAk~gl~IiGn~~~L~ 42 (92)
.+.+.+.+.||+||||+.++++|+.+.|.
T Consensus 517 ~~l~r~LlYvAiTRAk~~l~lvg~~~~l~ 545 (574)
T 3e1s_A 517 PMLSRNLVYTALTRARDRFFSAGSASAWQ 545 (574)
T ss_dssp GGCCHHHHHHHHHTEEEEEEEEECHHHHH
T ss_pred cccccceEEEEeeeeeeEEEEEECHHHHH
Confidence 45678889999999999999999988774
No 7
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=90.93 E-value=0.038 Score=36.67 Aligned_cols=23 Identities=17% Similarity=0.088 Sum_probs=19.4
Q ss_pred ccCCccceeeccccceeEEEEcc
Q psy16286 15 LKTVNRVCVALSRAKQGLFIMGN 37 (92)
Q Consensus 15 l~~~~RinVAlSRAk~gl~IiGn 37 (92)
....+.+-||+||||+.|+|++.
T Consensus 131 ~~~~~llYva~TRA~~~l~~~~~ 153 (174)
T 3dmn_A 131 EDERQLLYTICSRAMHELTLVAV 153 (174)
T ss_dssp GGGHHHHHHHHTTEEEEEEEEEE
T ss_pred hhhhceeEEEecCcccEEEEEeC
Confidence 34567889999999999999874
No 8
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=84.17 E-value=0.22 Score=39.19 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=21.9
Q ss_pred cCCccceeeccccceeEEEEccchhh
Q psy16286 16 KTVNRVCVALSRAKQGLFIMGNMKCL 41 (92)
Q Consensus 16 ~~~~RinVAlSRAk~gl~IiGn~~~L 41 (92)
.+.+.+.||+||||+.++++|+...|
T Consensus 561 ~~~~~~Yva~tRa~~~l~l~~~~~~l 586 (608)
T 1w36_D 561 VTRELVYTAVTRARRRLSLYADERIL 586 (608)
T ss_dssp SCHHHHHHHHTTBSSCEEEECCTTHH
T ss_pred hhhhhHHhhhhhhhceEEEEECHHHH
Confidence 35677899999999999999977654
No 9
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=84.16 E-value=0.25 Score=41.91 Aligned_cols=28 Identities=43% Similarity=0.672 Sum_probs=20.5
Q ss_pred eeccccceeEEEEccchhhhhccHHHHH
Q psy16286 23 VALSRAKQGLFIMGNMKCLSADSQLWQE 50 (92)
Q Consensus 23 VAlSRAk~gl~IiGn~~~L~~~~~~w~~ 50 (92)
||+||||+.||+.|...........|..
T Consensus 869 VAlTRAk~~L~l~~~~~~~~~~~~~~~~ 896 (1232)
T 3u4q_A 869 VALTRAKEKLFLIGSCKDHQKQLAKWQA 896 (1232)
T ss_dssp HHHHTEEEEEEEEEECSCHHHHHHHHHH
T ss_pred HHHHhhccEEEEEEEeCchhhHHHHhhh
Confidence 9999999999999976554333344543
No 10
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=67.06 E-value=0.79 Score=34.40 Aligned_cols=17 Identities=18% Similarity=0.452 Sum_probs=14.6
Q ss_pred ccceeeccccceeEEEE
Q psy16286 19 NRVCVALSRAKQGLFIM 35 (92)
Q Consensus 19 ~RinVAlSRAk~gl~Ii 35 (92)
+-+-||+||||+.||++
T Consensus 443 ~~~yva~tRa~~~l~~~ 459 (459)
T 3upu_A 443 QLLYVGVTRGRYDVFYV 459 (459)
T ss_dssp HHHHHHHHHEEEEEEEC
T ss_pred heeeeeecceeeEEEeC
Confidence 34789999999999985
No 11
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=64.14 E-value=1.8 Score=33.90 Aligned_cols=22 Identities=23% Similarity=0.270 Sum_probs=17.1
Q ss_pred Cccc-eeeccccceeEEEEccch
Q psy16286 18 VNRV-CVALSRAKQGLFIMGNMK 39 (92)
Q Consensus 18 ~~Ri-nVAlSRAk~gl~IiGn~~ 39 (92)
++|+ =||+||||+.||+.+...
T Consensus 592 ErRL~YVA~TRAk~~L~ls~~~~ 614 (673)
T 1uaa_A 592 ERRLAYVGITRAQKELTFTLCKE 614 (673)
T ss_dssp HHHHHHHHHHTEEEEEEEEECSS
T ss_pred HHHHHHHHHHhhhheEEEEEecc
Confidence 3443 699999999999987543
No 12
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=62.43 E-value=2.1 Score=36.11 Aligned_cols=15 Identities=27% Similarity=0.171 Sum_probs=13.7
Q ss_pred ceeeccccceeEEEE
Q psy16286 21 VCVALSRAKQGLFIM 35 (92)
Q Consensus 21 inVAlSRAk~gl~Ii 35 (92)
+=||+||||+.||+.
T Consensus 802 lYVAlTRAk~~L~l~ 816 (1180)
T 1w36_B 802 LYVALTRSVWHCSLG 816 (1180)
T ss_dssp HHHHHTTEEEEEEEE
T ss_pred HhhhhcchhhheEEE
Confidence 469999999999997
No 13
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=59.70 E-value=2.5 Score=33.65 Aligned_cols=17 Identities=24% Similarity=0.460 Sum_probs=14.8
Q ss_pred ceeeccccceeEEEEcc
Q psy16286 21 VCVALSRAKQGLFIMGN 37 (92)
Q Consensus 21 inVAlSRAk~gl~IiGn 37 (92)
+=||+||||+.||+...
T Consensus 604 ~YVaiTRA~~~L~ls~~ 620 (724)
T 1pjr_A 604 AYVGITRAEEELVLTSA 620 (724)
T ss_dssp HHHHHTTEEEEEEEEEE
T ss_pred HHHHHHHHhheEEEEee
Confidence 36999999999999764
No 14
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=51.38 E-value=3.8 Score=31.45 Aligned_cols=21 Identities=29% Similarity=0.295 Sum_probs=16.3
Q ss_pred CCccc-eeeccccceeEEEEcc
Q psy16286 17 TVNRV-CVALSRAKQGLFIMGN 37 (92)
Q Consensus 17 ~~~Ri-nVAlSRAk~gl~IiGn 37 (92)
.++|+ =||+||||+.||+...
T Consensus 594 eErrL~YVa~TRAk~~L~ls~~ 615 (647)
T 3lfu_A 594 EERRLAYVGVTRAMQKLTLTYA 615 (647)
T ss_dssp HHHHHHHHHHTTEEEEEEEEEE
T ss_pred HHHHHHHHHHhHHhhheEEEEe
Confidence 34454 5999999999999754
No 15
>1vje_A Autoinducer-2 production protein LUXS; structural genomics, hydrolase; 1.64A {Deinococcus radiodurans} SCOP: d.185.1.2 PDB: 1vgx_A 1inn_A 1j6v_A 1vh2_A
Probab=46.86 E-value=23 Score=23.89 Aligned_cols=51 Identities=16% Similarity=0.259 Sum_probs=37.9
Q ss_pred cceeeccccceeEEE--EccchhhhhccHHHHHHHHHHHhCCc-ccccccccccc
Q psy16286 20 RVCVALSRAKQGLFI--MGNMKCLSADSQLWQEIKNKLVTRRS-INESFRLQCNK 71 (92)
Q Consensus 20 RinVAlSRAk~gl~I--iGn~~~L~~~~~~w~~ll~~~~~~~~-i~~~~~l~c~~ 71 (92)
=|-+..=-+|-|+|+ +|..+.- .-.+.|.+.++++.+.+. |.-.-+.+|-+
T Consensus 74 iId~sPMGCrTGFYlil~G~~~~~-~v~~~~~~~l~~Il~~~e~VPga~~~qCGn 127 (166)
T 1vje_A 74 VVDVSPMGARTGMYMAVIGEPDEQ-GVMKAFEAALKDTAGHDQPIPGVSELECGN 127 (166)
T ss_dssp EEEEEECTTSSEEEEEEESSCCHH-HHHHHHHHHHHHHHTCCSCCTTCSTTTCTT
T ss_pred eEEECCcccccccEEEEeCCCCHH-HHHHHHHHHHHHHHhcCCCCCCcChhcCCC
Confidence 345666678999998 4766544 447889999999987776 77777788876
No 16
>1j6x_A Autoinducer-2 production protein LUXS; alpha-beta fold, signaling protein; 2.38A {Helicobacter pylori} SCOP: d.185.1.2
Probab=43.35 E-value=24 Score=23.69 Aligned_cols=51 Identities=10% Similarity=0.154 Sum_probs=37.7
Q ss_pred cceeeccccceeEEEE--ccchhhhhccHHHHHHHHHHHhCCcccccccccccc
Q psy16286 20 RVCVALSRAKQGLFIM--GNMKCLSADSQLWQEIKNKLVTRRSINESFRLQCNK 71 (92)
Q Consensus 20 RinVAlSRAk~gl~Ii--Gn~~~L~~~~~~w~~ll~~~~~~~~i~~~~~l~c~~ 71 (92)
=|-+..=-+|-|+|++ |..+.- .-.+.|++.++++.+.+.|.-.-+.+|-+
T Consensus 72 iId~sPMGCrTGFYlil~G~~~~~-~v~~~~~~~l~~Il~~~eVPga~~~qCGn 124 (160)
T 1j6x_A 72 VVDWSPMGCQTGFYLTVLNHDNYT-EILEVLEKTMQDVLKAKEVPASNEKQCGW 124 (160)
T ss_dssp EEEEEECTTSSEEEEEEESCCCHH-HHHHHHHHHHHHHTTCSSCTTCSTTTCTT
T ss_pred eEEECCcCcchhcEEEEeCCCCHH-HHHHHHHHHHHHHHhcCCCCCCChhcCCC
Confidence 3456666789999984 765544 44688999999998777777777788876
No 17
>1j98_A Autoinducer-2 production protein LUXS; autoinducer synthesis, signaling protein; 1.20A {Bacillus subtilis} SCOP: d.185.1.2 PDB: 1jqw_A 1jvi_A* 1ie0_A 2fqo_A* 2fqt_A* 1ycl_A*
Probab=38.42 E-value=32 Score=22.96 Aligned_cols=51 Identities=14% Similarity=0.263 Sum_probs=38.0
Q ss_pred cceeeccccceeEEEE--ccchhhhhccHHHHHHHHHHHhCCcccccccccccc
Q psy16286 20 RVCVALSRAKQGLFIM--GNMKCLSADSQLWQEIKNKLVTRRSINESFRLQCNK 71 (92)
Q Consensus 20 RinVAlSRAk~gl~Ii--Gn~~~L~~~~~~w~~ll~~~~~~~~i~~~~~l~c~~ 71 (92)
=|-+..=-+|-|+|++ |..+.- .-.+.|.+.++++.+.+.|.-.-+.+|-+
T Consensus 76 iId~sPMGCrTGFYl~l~G~~~~~-~v~~~~~~~l~~il~~~eVPga~~~qCGn 128 (157)
T 1j98_A 76 IIDISPMGCQTGYYLVVSGETTSA-EIVDLLEDTMKEAVEITEIPAANEKQCGQ 128 (157)
T ss_dssp EEEEEECTTSSEEEEEEEECCCHH-HHHHHHHHHHHHHTTCCSCTTCSTTTCTT
T ss_pred EEEeCCcCcccccEEEEeCCCCHH-HHHHHHHHHHHHHHhcCCCCCCChhcCCC
Confidence 4556666789999984 765544 44688999999998777777777788876
No 18
>1ng7_A Poliovirus 3A-N, genome polyprotein [core protein P3A]; helical hairpin, unfolded domain, symmetric dimer, viral protein; NMR {Human poliovirus 1} SCOP: a.178.1.1
Probab=36.05 E-value=22 Score=20.11 Aligned_cols=17 Identities=18% Similarity=0.120 Sum_probs=14.6
Q ss_pred HHHHHHHHhCCcccccc
Q psy16286 49 QEIKNKLVTRRSINESF 65 (92)
Q Consensus 49 ~~ll~~~~~~~~i~~~~ 65 (92)
..+++|++++|+|.+..
T Consensus 32 ~eV~~YC~~kGwIiP~~ 48 (60)
T 1ng7_A 32 QEVRDYCEKKGWIVNIT 48 (60)
T ss_dssp HHHHHHHHHHTCCCCCC
T ss_pred HHHHHHHHHCCceeccC
Confidence 57899999999998765
No 19
>1j6w_A Autoinducer-2 production protein LUXS; alpha-beta fold, signaling protein; 2.10A {Haemophilus influenzae} SCOP: d.185.1.2 PDB: 1joe_A
Probab=22.85 E-value=66 Score=21.76 Aligned_cols=51 Identities=18% Similarity=0.330 Sum_probs=36.6
Q ss_pred cceeeccccceeEEE--EccchhhhhccHHHHHHHHHHH---hCCcccccccccccc
Q psy16286 20 RVCVALSRAKQGLFI--MGNMKCLSADSQLWQEIKNKLV---TRRSINESFRLQCNK 71 (92)
Q Consensus 20 RinVAlSRAk~gl~I--iGn~~~L~~~~~~w~~ll~~~~---~~~~i~~~~~l~c~~ 71 (92)
=|-+..=-+|-|+|+ +|..+.- .-.+.|.+.++++. +.+.|.-.-+.+|-+
T Consensus 75 iId~sPMGCrTGFYlil~G~~~~~-~v~~~~~~~l~~Il~~~~~~eVPga~~~qCGn 130 (175)
T 1j6w_A 75 IIDISPMGCRTGFYMSLIGTPNEQ-KVSEAWLASMQDVLGVQDQASIPELNIYQCGS 130 (175)
T ss_dssp EEEEEECTTSSEEEEEEESCCCHH-HHHHHHHHHHHHHHTCCCGGGCTTCSTTTCTT
T ss_pred EEEeCCcCcccccEEEEeCCCCHH-HHHHHHHHHHHHHHhhcccCCCCCCChhcCCC
Confidence 355666678999996 5766544 44688999999987 345676677778876
No 20
>4au1_A Precorrin-8X methylmutase; isomerase, HBA; HET: P8X; 1.45A {Rhodobacter capsulatus}
Probab=20.18 E-value=62 Score=22.77 Aligned_cols=35 Identities=14% Similarity=0.168 Sum_probs=24.7
Q ss_pred eeEEEEccchhhhhccHHHHHHHHHHHhCCccccccccccc
Q psy16286 30 QGLFIMGNMKCLSADSQLWQEIKNKLVTRRSINESFRLQCN 70 (92)
Q Consensus 30 ~gl~IiGn~~~L~~~~~~w~~ll~~~~~~~~i~~~~~l~c~ 70 (92)
.++++|||+-+- .-.+++.+++.+...+.+.+-+|
T Consensus 149 gaIvaIGNAPTA------L~~Lleli~~~~~~rPalVIG~P 183 (229)
T 4au1_A 149 GAVVAIGNAPTA------LFHLLNMLEDPACPRPAAIIGCP 183 (229)
T ss_dssp TCEEEECSCHHH------HHHHHHHTTSTTSCCCSEEEECC
T ss_pred CcEEEEeCcHHH------HHHHHHHHHhcCCCCCCEEEEcC
Confidence 379999999877 66788877666655566555544
Done!