RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16286
         (92 letters)



>g1qhh.1 c.37.1.19 (A:,B:,C:,D:) DEXX box DNA helicase {Bacillus
           stearothermophilus, PcrA [TaxId: 1422]}
          Length = 623

 Score = 25.3 bits (54), Expect = 1.3
 Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 9/46 (19%)

Query: 23  VALSRAKQGLFI--------MGNMKCLSADSQLWQEIKNKLVTRRS 60
           V ++RA++ L +         GN++     S+   EI   L+   S
Sbjct: 578 VGITRAEEELVLTSAQMRTLFGNIQMDPP-SRFLNEIPAHLLETAS 622


>d1w36b2 c.37.1.19 (B:486-880) Exodeoxyribonuclease V beta chain
           (RecB), N-terminal domain {Escherichia coli [TaxId:
           562]}
          Length = 395

 Score = 25.0 bits (53), Expect = 1.5
 Identities = 4/12 (33%), Positives = 7/12 (58%)

Query: 23  VALSRAKQGLFI 34
           VAL+R+     +
Sbjct: 319 VALTRSVWHCSL 330


>d1w36d2 c.37.1.19 (D:361-606) Exodeoxyribonuclease V alpha chain
           (RecD) {Escherichia coli [TaxId: 562]}
          Length = 246

 Score = 24.4 bits (52), Expect = 2.6
 Identities = 7/21 (33%), Positives = 14/21 (66%)

Query: 23  VALSRAKQGLFIMGNMKCLSA 43
            A++RA++ L +  + + LSA
Sbjct: 208 TAVTRARRRLSLYADERILSA 228


>d1n8ia_ c.1.13.1 (A:) Malate synthase G {Mycobacterium tuberculosis
           [TaxId: 1773]}
          Length = 726

 Score = 24.1 bits (52), Expect = 3.2
 Identities = 3/22 (13%), Positives = 9/22 (40%)

Query: 45  SQLWQEIKNKLVTRRSINESFR 66
             L   +++ ++T   +  S  
Sbjct: 641 QLLANWLRHGVITSADVRASLE 662


>d1d8ca_ c.1.13.1 (A:) Malate synthase G {Escherichia coli [TaxId:
           562]}
          Length = 720

 Score = 24.2 bits (52), Expect = 3.3
 Identities = 2/22 (9%), Positives = 10/22 (45%)

Query: 45  SQLWQEIKNKLVTRRSINESFR 66
             +   +++ ++T+  +  S  
Sbjct: 638 QHIANWLRHGILTKEQVQASLE 659


>d1pjra2 c.37.1.19 (A:319-651) DEXX box DNA helicase {Bacillus
           stearothermophilus, PcrA [TaxId: 1422]}
          Length = 333

 Score = 23.9 bits (50), Expect = 4.0
 Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 9/46 (19%)

Query: 23  VALSRAKQGLFI--------MGNMKCLSADSQLWQEIKNKLVTRRS 60
           V ++RA++ L +         GN++     S+   EI   L+   S
Sbjct: 288 VGITRAEEELVLTSAQMRTLFGNIQMDPP-SRFLNEIPAHLLETAS 332


>d1uaaa2 c.37.1.19 (A:308-640) DEXX box DNA helicase {Escherichia
           coli, RepD [TaxId: 562]}
          Length = 333

 Score = 23.2 bits (48), Expect = 7.9
 Identities = 4/12 (33%), Positives = 8/12 (66%)

Query: 23  VALSRAKQGLFI 34
           V ++RA++ L  
Sbjct: 291 VGITRAQKELTF 302


>d1izna_ e.43.1.1 (A:) Capz alpha-1 subunit {Chicken (Gallus gallus)
           [TaxId: 9031]}
          Length = 275

 Score = 22.8 bits (49), Expect = 9.2
 Identities = 8/32 (25%), Positives = 18/32 (56%)

Query: 54  KLVTRRSINESFRLQCNKHRAVTIIRAVEDFE 85
           +LV+ + I +S ++  +   A   I+ +E+ E
Sbjct: 199 QLVSHKDIQDSVQVSSDVQTAKEFIKIIENAE 230


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.133    0.405 

Gapped
Lambda     K      H
   0.267   0.0443    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 309,640
Number of extensions: 10587
Number of successful extensions: 32
Number of sequences better than 10.0: 1
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 8
Length of query: 92
Length of database: 2,407,596
Length adjustment: 56
Effective length of query: 36
Effective length of database: 1,638,716
Effective search space: 58993776
Effective search space used: 58993776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.6 bits)