BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1629
(77 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2R37|A Chain A, Crystal Structure Of Human Glutathione Peroxidase 3
(Selenocysteine To Glycine Mutant)
pdb|2R37|B Chain B, Crystal Structure Of Human Glutathione Peroxidase 3
(Selenocysteine To Glycine Mutant)
Length = 207
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 4 VRWVRXXXXXXXXXXXXHKIQVNGENEHPLYTFLKSSCPPTRDGYRTPVTDLYYRPVRVS 63
+++VR K VNGE E YTFLK+SCPPT + T L++ P++V
Sbjct: 96 LKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTS-DRLFWEPMKVH 154
Query: 64 DVRWNFEKFLVD 75
D+RWNFEKFLV
Sbjct: 155 DIRWNFEKFLVG 166
>pdb|2HE3|A Chain A, Crystal Structure Of The Selenocysteine To Cysteine Mutant
Of Human Glutathionine Peroxidase 2 (Gpx2)
Length = 208
Score = 57.8 bits (138), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 1 MNCVRWVRXXXXXXXXXXXXHKIQVNGENEHPLYTFLKSSCPPTRDGYRTPVTD---LYY 57
+N +++VR K +VNG+NEHP++ +LK P D + +TD + +
Sbjct: 103 LNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPYDDPFSLMTDPKLIIW 162
Query: 58 RPVRVSDVRWNFEKFLV 74
PVR SDV WNFEKFL+
Sbjct: 163 SPVRRSDVAWNFEKFLI 179
>pdb|1GP1|A Chain A, The Refined Structure Of The Selenoenzyme Glutathione
Peroxidase At 0.2-Nm Resolution
pdb|1GP1|B Chain B, The Refined Structure Of The Selenoenzyme Glutathione
Peroxidase At 0.2-Nm Resolution
Length = 198
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 1 MNCVRWVRXXXXXXXXXXXXHKIQVNGENEHPLYTFLKSSCPPTRDGYRTPVTD---LYY 57
+NC+++VR K +VNGE HPL+ FL+ P D +TD + +
Sbjct: 89 LNCLKYVRPGGGFEPNFMLFEKCEVNGEKAHPLFAFLREVLPTPSDDATALMTDPKFITW 148
Query: 58 RPVRVSDVRWNFEKFLV 74
PV +DV WNFEKFLV
Sbjct: 149 SPVCRNDVSWNFEKFLV 165
>pdb|2F8A|A Chain A, Crystal Structure Of The Selenocysteine To Glycine Mutant
Of Human Glutathione Peroxidase 1
pdb|2F8A|B Chain B, Crystal Structure Of The Selenocysteine To Glycine Mutant
Of Human Glutathione Peroxidase 1
Length = 208
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 1 MNCVRWVRXXXXXXXXXXXXHKIQVNGENEHPLYTFLKSSCPPTRDGYRTPVTD---LYY 57
+N +++VR K +VNG HPL+ FL+ + P D +TD + +
Sbjct: 103 LNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITW 162
Query: 58 RPVRVSDVRWNFEKFLV 74
PV +DV WNFEKFLV
Sbjct: 163 SPVCRNDVAWNFEKFLV 179
>pdb|2I3Y|A Chain A, Crystal Structure Of Human Glutathione Peroxidase 5
Length = 215
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 4 VRWVRXXXXXXXXXXXXHKIQVNGENEHPLYTFLKSSCPPTRDGYRTPVTDLYYRPVRVS 63
+++VR K VNGE E +++FLK SCP + T + + PV+V
Sbjct: 114 LKYVRPGGGFVPSFQLFEKGDVNGEKEQKVFSFLKHSCPHPSEILGT-FKSISWDPVKVH 172
Query: 64 DVRWNFEKFLV 74
D+RWNFEKFLV
Sbjct: 173 DIRWNFEKFLV 183
>pdb|3CMI|A Chain A, Crystal Structure Of Glutathione-Dependent Phospholipid
Peroxidase Hyr1 From The Yeast Saccharomyces Cerevisiae
Length = 171
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 15/56 (26%)
Query: 22 KIQVNGENEHPLYTFLKSSCPPTRDGYRTPVTDLYYRPVRVSDVRWNFEKFLVDHR 77
KI VNG NE P+Y FLKS + G + + ++WNFEKFLVD +
Sbjct: 103 KIDVNGGNEDPVYKFLKSQ----KSGM-----------LGLRGIKWNFEKFLVDKK 143
>pdb|2VUP|A Chain A, Crystal Structure Of A Type Ii Tryparedoxin-Dependant
Peroxidase From Trypanosoma Brucei
Length = 190
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 15/54 (27%)
Query: 22 KIQVNGENEHPLYTFLKSSCPPTRDGYRTPVTDLYYRPVRVSDVRWNFEKFLVD 75
KI VNGEN HPLY ++K + P ++ ++WNF FL+D
Sbjct: 120 KINVNGENAHPLYEYMKKTKPGI---------------LKTKAIKWNFTSFLID 158
>pdb|3DWV|A Chain A, Glutathione Peroxidase-Type Tryparedoxin Peroxidase,
Oxidized Form
pdb|3DWV|B Chain B, Glutathione Peroxidase-Type Tryparedoxin Peroxidase,
Oxidized Form
Length = 187
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 15/54 (27%)
Query: 22 KIQVNGENEHPLYTFLKSSCPPTRDGYRTPVTDLYYRPVRVSDVRWNFEKFLVD 75
KI VNGEN HPLY ++K + P + ++WNF FL+D
Sbjct: 118 KINVNGENAHPLYEYMKKTKPGI---------------LATKAIKWNFTSFLID 156
>pdb|2RM5|A Chain A, Glutathione Peroxidase-Type Tryparedoxin Peroxidase,
Oxidized Form
pdb|2RM6|A Chain A, Glutathione Peroxidase-Type Tryparedoxin Peroxidase,
Reduced Form
Length = 167
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 15/54 (27%)
Query: 22 KIQVNGENEHPLYTFLKSSCPPTRDGYRTPVTDLYYRPVRVSDVRWNFEKFLVD 75
KI VNGEN HPLY ++K + P + ++WNF FL+D
Sbjct: 98 KINVNGENAHPLYEYMKKTKPGI---------------LATKAIKWNFTSFLID 136
>pdb|3E0U|A Chain A, Crystal Structure Of T. Cruzi Gpx1
Length = 166
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 15/54 (27%)
Query: 22 KIQVNGENEHPLYTFLKSSCPPTRDGYRTPVTDLYYRPVRVSDVRWNFEKFLVD 75
KI VNG HPLY F+K++ P ++WNF FL+D
Sbjct: 97 KIDVNGSKAHPLYEFMKATIPGL---------------FGTKAIKWNFTSFLID 135
>pdb|2P5Q|A Chain A, Crystal Structure Of The Poplar Glutathione Peroxidase 5
In The Reduced Form
pdb|2P5Q|B Chain B, Crystal Structure Of The Poplar Glutathione Peroxidase 5
In The Reduced Form
pdb|2P5Q|C Chain C, Crystal Structure Of The Poplar Glutathione Peroxidase 5
In The Reduced Form
pdb|2P5Q|D Chain D, Crystal Structure Of The Poplar Glutathione Peroxidase 5
In The Reduced Form
pdb|2P5R|A Chain A, Crystal Structure Of The Poplar Glutathione Peroxidase 5
In The Oxidized Form
pdb|2P5R|B Chain B, Crystal Structure Of The Poplar Glutathione Peroxidase 5
In The Oxidized Form
Length = 170
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 26/54 (48%), Gaps = 16/54 (29%)
Query: 22 KIQVNGENEHPLYTFLKSSCPPTRDGYRTPVTDLYYRPVRVSDVRWNFEKFLVD 75
KI VNGEN PLY FLK L + D++WNF KFLV+
Sbjct: 104 KIDVNGENASPLYRFLK----------------LGKWGIFGDDIQWNFAKFLVN 141
>pdb|2V1M|A Chain A, Crystal Structure Of Schistosoma Mansoni Glutathione
Peroxidase
Length = 169
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 16/56 (28%)
Query: 22 KIQVNGENEHPLYTFLKSSCPPTRDGYRTPVTDLYYRPVRVSDVRWNFEKFLVDHR 77
KI+VNG + LY FLKS T ++++WNF KFLVD +
Sbjct: 103 KIKVNGSDADDLYKFLKSRQHGTL----------------TNNIKWNFSKFLVDRQ 142
>pdb|2WGR|A Chain A, Combining Crystallography And Molecular Dynamics: The Case
Of Schistosoma Mansoni Phospholipid Glutathione
Peroxidase
Length = 169
Score = 34.7 bits (78), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 16/56 (28%)
Query: 22 KIQVNGENEHPLYTFLKSSCPPTRDGYRTPVTDLYYRPVRVSDVRWNFEKFLVDHR 77
KI+VNG + LY FLKS T ++++WNF KFLVD +
Sbjct: 103 KIKVNGSDADDLYKFLKSRQHGTL----------------TNNIKWNFSKFLVDRQ 142
>pdb|2OBI|A Chain A, Crystal Structure Of The Selenocysteine To Cysteine Mutant
Of Human Phospholipid Hydroperoxide Glutathione
Peroxidase (Gpx4)
Length = 183
Score = 32.3 bits (72), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 14/54 (25%)
Query: 22 KIQVNGENEHPLYTFLKSSCPPTRDGYRTPVTDLYYRPVRVSDVRWNFEKFLVD 75
KI VNG++ HPL+ ++K P G + + ++WNF KFL+D
Sbjct: 118 KICVNGDDAHPLWKWMKIQ--PKGKG------------ILGNAIKWNFTKFLID 157
>pdb|2GS3|A Chain A, Crystal Structure Of The Selenocysteine To Glycine Mutant
Of Human Glutathione Peroxidase 4(Gpx4)
Length = 185
Score = 32.0 bits (71), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 14/54 (25%)
Query: 22 KIQVNGENEHPLYTFLKSSCPPTRDGYRTPVTDLYYRPVRVSDVRWNFEKFLVD 75
KI VNG++ HPL+ ++K P G + + ++WNF KFL+D
Sbjct: 120 KICVNGDDAHPLWKWMK--IQPKGKG------------ILGNAIKWNFTKFLID 159
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.141 0.482
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,203,446
Number of Sequences: 62578
Number of extensions: 67316
Number of successful extensions: 163
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 135
Number of HSP's gapped (non-prelim): 15
length of query: 77
length of database: 14,973,337
effective HSP length: 46
effective length of query: 31
effective length of database: 12,094,749
effective search space: 374937219
effective search space used: 374937219
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)