Query psy1629
Match_columns 77
No_of_seqs 151 out of 1044
Neff 5.8
Searched_HMMs 29240
Date Fri Aug 16 17:35:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1629.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1629hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i3y_A Epididymal secretory gl 99.6 1.6E-15 5.3E-20 104.6 5.9 72 5-77 115-186 (215)
2 2r37_A Glutathione peroxidase 99.5 3E-14 1E-18 97.3 6.0 72 5-77 97-168 (207)
3 2f8a_A Glutathione peroxidase 99.2 3.2E-11 1.1E-15 81.7 6.1 72 5-77 107-182 (208)
4 3dwv_A Glutathione peroxidase- 98.5 1.1E-07 3.8E-12 62.3 4.1 51 12-77 108-158 (187)
5 3kij_A Probable glutathione pe 98.4 8.2E-08 2.8E-12 62.3 2.6 45 13-77 101-145 (180)
6 2p31_A CL683, glutathione pero 98.1 1.1E-06 3.9E-11 57.0 2.6 45 13-77 112-156 (181)
7 2v1m_A Glutathione peroxidase; 97.5 8.4E-05 2.9E-09 46.5 4.0 50 12-77 93-142 (169)
8 2vup_A Glutathione peroxidase- 97.5 6E-05 2E-09 49.1 3.0 51 12-77 110-160 (190)
9 2gs3_A PHGPX, GPX-4, phospholi 97.4 0.00011 3.8E-09 47.6 3.3 52 12-77 110-161 (185)
10 3cmi_A Peroxiredoxin HYR1; thi 97.4 0.00019 6.7E-09 45.6 4.0 52 11-77 92-143 (171)
11 2p5q_A Glutathione peroxidase 97.3 7.7E-05 2.6E-09 46.7 1.7 50 12-77 94-143 (170)
12 2obi_A PHGPX, GPX-4, phospholi 97.3 0.00029 9.9E-09 45.3 4.4 53 11-77 107-159 (183)
13 2cv8_A TRNA-splicing endonucle 38.0 9.7 0.00033 25.0 0.8 17 6-22 103-119 (180)
14 3ajv_B TRNA-splicing endonucle 36.5 10 0.00034 25.2 0.7 17 6-22 111-127 (186)
15 2zyz_B TRNA-splicing endonucle 35.8 10 0.00036 24.9 0.7 17 6-22 106-122 (183)
16 1a79_A TRNA endonuclease; 2.28 32.9 13 0.00045 24.2 0.8 17 6-22 93-109 (171)
17 3iey_A TRNA-splicing endonucle 26.1 15 0.00053 23.7 0.2 17 6-22 72-88 (154)
18 1r0v_A ENDA, tRNA-intron endon 25.6 12 0.00043 26.8 -0.4 19 6-24 232-250 (305)
19 2kyg_C Protein CBFA2T1; protei 24.8 25 0.00086 18.0 0.8 11 6-16 4-14 (38)
20 3r8n_I 30S ribosomal protein S 23.4 30 0.001 22.0 1.2 21 6-35 17-37 (127)
No 1
>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}
Probab=99.59 E-value=1.6e-15 Score=104.62 Aligned_cols=72 Identities=49% Similarity=0.934 Sum_probs=57.9
Q ss_pred eeeecCCCcccceeeeEeEEecCCCCCHHHHHHHhcCCCCCCCCCCcccccccCCCCCCCccccceEEeecCC
Q psy1629 5 RWVRPGNNFNPGFQFFHKIQVNGENEHPLYTFLKSSCPPTRDGYRTPVTDLYYRPVRVSDVRWNFEKFLVDHR 77 (77)
Q Consensus 5 ~~vrpg~~f~v~Fp~f~Ki~VnG~~ahPLy~~Lk~~~~~~~~~~g~~~~~~~~~~~~~~~I~WNF~KFLVdrd 77 (77)
+|||||..|+++||++++++|+|+.+||+|+||+.+++...+..|.+ ..+.|.|...++|+|||++||||++
T Consensus 115 ~~~~~~~~~~~~fpll~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~-~~~~~~p~~~~~i~~npttfLID~~ 186 (215)
T 2i3y_A 115 KYVRPGGGFVPSFQLFEKGDVNGEKEQKVFSFLKHSCPHPSEILGTF-KSISWDPVKVHDIRWNFEKFLVGPD 186 (215)
T ss_dssp HHTSSCTTCCCSSEEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCT-TTCCSSSCCTTCCCSTTCEEEECTT
T ss_pred HhccchhccCccceeEeeeccCCcccchHHHHHHhhCcccccccccc-cccccccccccccccCceEEEECCC
Confidence 47899999999999999999999999999999998875322222221 2345677777799999999999986
No 2
>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}
Probab=99.50 E-value=3e-14 Score=97.27 Aligned_cols=72 Identities=54% Similarity=1.056 Sum_probs=57.0
Q ss_pred eeeecCCCcccceeeeEeEEecCCCCCHHHHHHHhcCCCCCCCCCCcccccccCCCCCCCccccceEEeecCC
Q psy1629 5 RWVRPGNNFNPGFQFFHKIQVNGENEHPLYTFLKSSCPPTRDGYRTPVTDLYYRPVRVSDVRWNFEKFLVDHR 77 (77)
Q Consensus 5 ~~vrpg~~f~v~Fp~f~Ki~VnG~~ahPLy~~Lk~~~~~~~~~~g~~~~~~~~~~~~~~~I~WNF~KFLVdrd 77 (77)
++||||..|+++||++++++|+|+.+||+|.+|+...+...+..|.+ ..+.|.|...++|+|||++||||++
T Consensus 97 ~~~~~~~~~~~~fp~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~-~~~~~~p~~~~~i~~~~ttflID~~ 168 (207)
T 2r37_A 97 KYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTS-DRLFWEPMKVHDIRWNFEKFLVGPD 168 (207)
T ss_dssp HHTSSCTTCCCSSEEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCG-GGBCCSSCCTTCCCSTTCEEEECTT
T ss_pred HhcchhhccCccceeeeEeccCCcccchHHHHHHhhCcccccccccc-ccccccccccCcccccceEEEECCC
Confidence 46899999999999999999999999999999998765322222221 1245666666789999999999986
No 3
>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A
Probab=99.19 E-value=3.2e-11 Score=81.71 Aligned_cols=72 Identities=44% Similarity=0.890 Sum_probs=55.2
Q ss_pred eeeecCCCcccceeeeEeEEecCCCCCHHHHHHHhcCCCCCC----CCCCcccccccCCCCCCCccccceEEeecCC
Q psy1629 5 RWVRPGNNFNPGFQFFHKIQVNGENEHPLYTFLKSSCPPTRD----GYRTPVTDLYYRPVRVSDVRWNFEKFLVDHR 77 (77)
Q Consensus 5 ~~vrpg~~f~v~Fp~f~Ki~VnG~~ahPLy~~Lk~~~~~~~~----~~g~~~~~~~~~~~~~~~I~WNF~KFLVdrd 77 (77)
+|+|||..|+++||++.+++++|+.++|+|++|+...+...+ .++.+ ..+.|.+.....|.|++++||||++
T Consensus 107 ~~~~~~~~~~~~fp~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~p~tflID~~ 182 (208)
T 2f8a_A 107 KYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDP-KLITWSPVCRNDVAWNFEKFLVGPD 182 (208)
T ss_dssp HHTSSCTTCCCSSEEBCCCCCSSTTCCHHHHHHHHHSCSCTTCSSCCCSSG-GGCCSSSCCTTCCCSTTCEEEECTT
T ss_pred HhcccccccccceEEEEEeecCCCCccHHHHHHHhcCCCccccchhhcccc-ccccccccccCccccCceEEEEcCC
Confidence 468999999999999999999999999999999987652111 11221 1234555555689999999999986
No 4
>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A
Probab=98.48 E-value=1.1e-07 Score=62.28 Aligned_cols=51 Identities=43% Similarity=0.876 Sum_probs=42.4
Q ss_pred CcccceeeeEeEEecCCCCCHHHHHHHhcCCCCCCCCCCcccccccCCCCCCCccccceEEeecCC
Q psy1629 12 NFNPGFQFFHKIQVNGENEHPLYTFLKSSCPPTRDGYRTPVTDLYYRPVRVSDVRWNFEKFLVDHR 77 (77)
Q Consensus 12 ~f~v~Fp~f~Ki~VnG~~ahPLy~~Lk~~~~~~~~~~g~~~~~~~~~~~~~~~I~WNF~KFLVdrd 77 (77)
.|+++||++.+++++|..++++|++|+...+. ..+. ..|.|||+.||||++
T Consensus 108 ~~~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~---~~~~------------~~iP~~~~~~liD~~ 158 (187)
T 3dwv_A 108 KFKAEFPIMAKINVNGENAHPLYEYMKKTKPG---ILAT------------KAIKWNFTSFLIDRD 158 (187)
T ss_dssp CCCCSSCBBCCBCCSCC-CCHHHHHHHHHSCC---SBSS------------SSCCSTTCEEEECTT
T ss_pred ccCCCCceeeccccCCcchhHHHHHHHhhcCC---ccCC------------CccccceeEEEECCC
Confidence 68999999999999999999999999998742 2222 378899999999985
No 5
>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A
Probab=98.44 E-value=8.2e-08 Score=62.34 Aligned_cols=45 Identities=38% Similarity=0.784 Sum_probs=40.9
Q ss_pred cccceeeeEeEEecCCCCCHHHHHHHhcCCCCCCCCCCcccccccCCCCCCCccccceEEeecCC
Q psy1629 13 FNPGFQFFHKIQVNGENEHPLYTFLKSSCPPTRDGYRTPVTDLYYRPVRVSDVRWNFEKFLVDHR 77 (77)
Q Consensus 13 f~v~Fp~f~Ki~VnG~~ahPLy~~Lk~~~~~~~~~~g~~~~~~~~~~~~~~~I~WNF~KFLVdrd 77 (77)
|+++||++.+++++|+.++++|+|+....+ ..+.|||+.||||++
T Consensus 101 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--------------------~~p~~~~~~~lid~~ 145 (180)
T 3kij_A 101 YGVTFPIFHKIKILGSEGEPAFRFLVDSSK--------------------KEPRWNFWKYLVNPE 145 (180)
T ss_dssp HCCCSCBBCCCCCSSTTCCHHHHHHHHHHT--------------------CCCSSTTCEEEECTT
T ss_pred cCCCCceeeeeeccCccccHHHHHHHhcCC--------------------CCccccceEEEECCC
Confidence 899999999999999999999999998753 267999999999985
No 6
>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}
Probab=98.12 E-value=1.1e-06 Score=57.01 Aligned_cols=45 Identities=33% Similarity=0.738 Sum_probs=40.3
Q ss_pred cccceeeeEeEEecCCCCCHHHHHHHhcCCCCCCCCCCcccccccCCCCCCCccccceEEeecCC
Q psy1629 13 FNPGFQFFHKIQVNGENEHPLYTFLKSSCPPTRDGYRTPVTDLYYRPVRVSDVRWNFEKFLVDHR 77 (77)
Q Consensus 13 f~v~Fp~f~Ki~VnG~~ahPLy~~Lk~~~~~~~~~~g~~~~~~~~~~~~~~~I~WNF~KFLVdrd 77 (77)
++++||++.+++++|..++++|+|+....| ..++|||+.||||++
T Consensus 112 ~~~~~p~~~~~d~~g~~~~~~~~~~~~~~P--------------------~~~~~~~~~~lid~~ 156 (181)
T 2p31_A 112 YSVSFPMFSKIAVTGTGAHPAFKYLAQTSG--------------------KEPTWNFWKYLVAPD 156 (181)
T ss_dssp HCCCSCBBCCCCCSSTTSCHHHHHHHHHHS--------------------CCCCSTTCEEEECTT
T ss_pred cCCCceeEeecccCCccchhhhhhhhhcCC--------------------CccccceeEEEEcCC
Confidence 788999999999999999999999987765 268999999999985
No 7
>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A
Probab=97.54 E-value=8.4e-05 Score=46.46 Aligned_cols=50 Identities=42% Similarity=0.830 Sum_probs=41.1
Q ss_pred CcccceeeeEeEEecCCCCCHHHHHHHhcCCCCCCCCCCcccccccCCCCCCCccccceEEeecCC
Q psy1629 12 NFNPGFQFFHKIQVNGENEHPLYTFLKSSCPPTRDGYRTPVTDLYYRPVRVSDVRWNFEKFLVDHR 77 (77)
Q Consensus 12 ~f~v~Fp~f~Ki~VnG~~ahPLy~~Lk~~~~~~~~~~g~~~~~~~~~~~~~~~I~WNF~KFLVdrd 77 (77)
.|+++||++.+++++|..++++|++|+..... ..+ ..|.|+.+.||||++
T Consensus 93 ~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~---~~~-------------~~i~~~P~~~lid~~ 142 (169)
T 2v1m_A 93 KYGVQFDMFSKIKVNGSDADDLYKFLKSRQHG---TLT-------------NNIKWNFSKFLVDRQ 142 (169)
T ss_dssp HHCCCSEEBCCCCCSSTTSCHHHHHHHHHSCC---SSS-------------CSCCSTTCEEEECTT
T ss_pred hcCCCCceEEEEeecCccccHHHHHHHhhcCC---ccC-------------CcccccceEEEECCC
Confidence 57889999999999999999999999987631 111 258999999999985
No 8
>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}
Probab=97.50 E-value=6e-05 Score=49.11 Aligned_cols=51 Identities=43% Similarity=0.898 Sum_probs=41.0
Q ss_pred CcccceeeeEeEEecCCCCCHHHHHHHhcCCCCCCCCCCcccccccCCCCCCCccccceEEeecCC
Q psy1629 12 NFNPGFQFFHKIQVNGENEHPLYTFLKSSCPPTRDGYRTPVTDLYYRPVRVSDVRWNFEKFLVDHR 77 (77)
Q Consensus 12 ~f~v~Fp~f~Ki~VnG~~ahPLy~~Lk~~~~~~~~~~g~~~~~~~~~~~~~~~I~WNF~KFLVdrd 77 (77)
.++++||++..++.+|+.++++|++|...... ..+. .+|+|||+.||||++
T Consensus 110 ~~~~~~p~l~~~D~~~~~~~~~~~~l~~~~~~---v~~~------------P~i~~~~~~~lid~~ 160 (190)
T 2vup_A 110 KFKAEFPIMAKINVNGENAHPLYEYMKKTKPG---ILKT------------KAIKWNFTSFLIDRD 160 (190)
T ss_dssp HHCCCSCBBCCCBSSSTTBCHHHHHHHHHSCC---GGGC------------CSCCSTTCEEEECTT
T ss_pred hcCCCeEEEeecccCcccccHHHHHHHhhcCC---cCCC------------ccccccceEEEECCC
Confidence 57889999999999999999999999876421 1111 268999999999985
No 9
>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}
Probab=97.40 E-value=0.00011 Score=47.61 Aligned_cols=52 Identities=37% Similarity=0.752 Sum_probs=41.2
Q ss_pred CcccceeeeEeEEecCCCCCHHHHHHHhcCCCCCCCCCCcccccccCCCCCCCccccceEEeecCC
Q psy1629 12 NFNPGFQFFHKIQVNGENEHPLYTFLKSSCPPTRDGYRTPVTDLYYRPVRVSDVRWNFEKFLVDHR 77 (77)
Q Consensus 12 ~f~v~Fp~f~Ki~VnG~~ahPLy~~Lk~~~~~~~~~~g~~~~~~~~~~~~~~~I~WNF~KFLVdrd 77 (77)
.|+++||++..++++|+.++++|++|+...+.. +.. ...|+|+.+.||||++
T Consensus 110 ~~~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~-g~~-------------~~~i~~~P~~~lid~~ 161 (185)
T 2gs3_A 110 GYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGK-GIL-------------GNAIKWNFTKFLIDKN 161 (185)
T ss_dssp HTTCCSEEBCCCBSSSTTBCHHHHHHTTSGGGC-CSS-------------SSSCCSSCCEEEECTT
T ss_pred HcCCCCeeeeeeccCChhhhHHHHHHHhhcccc-ccc-------------CCcccccceEEEECCC
Confidence 578899999999999999999999998765310 011 1268999999999985
No 10
>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}
Probab=97.35 E-value=0.00019 Score=45.59 Aligned_cols=52 Identities=46% Similarity=0.829 Sum_probs=39.3
Q ss_pred CCcccceeeeEeEEecCCCCCHHHHHHHhcCCCCCCCCCCcccccccCCCCCCCccccceEEeecCC
Q psy1629 11 NNFNPGFQFFHKIQVNGENEHPLYTFLKSSCPPTRDGYRTPVTDLYYRPVRVSDVRWNFEKFLVDHR 77 (77)
Q Consensus 11 ~~f~v~Fp~f~Ki~VnG~~ahPLy~~Lk~~~~~~~~~~g~~~~~~~~~~~~~~~I~WNF~KFLVdrd 77 (77)
..++++||++...+.+|..++++|.++....-. ..+ ...|.|||+.||||++
T Consensus 92 ~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~---v~~------------~P~i~~~~~~~lid~~ 143 (171)
T 3cmi_A 92 LNYGVTFPIMKKIDVNGGNEDPVYKFLKSQKSG---MLG------------LRGIKWNFEKFLVDKK 143 (171)
T ss_dssp ---CCCSCBBCCCBSSSTTBCHHHHHHHHHSCC---SSS------------CCSCCSTTCEEEECSS
T ss_pred hccCCCceEEeeccCCCccchHHHHHHHhccCC---cCC------------CCcccccceEEEECCC
Confidence 467889999988899999999999999876421 111 1368999999999985
No 11
>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A
Probab=97.31 E-value=7.7e-05 Score=46.65 Aligned_cols=50 Identities=48% Similarity=0.858 Sum_probs=39.9
Q ss_pred CcccceeeeEeEEecCCCCCHHHHHHHhcCCCCCCCCCCcccccccCCCCCCCccccceEEeecCC
Q psy1629 12 NFNPGFQFFHKIQVNGENEHPLYTFLKSSCPPTRDGYRTPVTDLYYRPVRVSDVRWNFEKFLVDHR 77 (77)
Q Consensus 12 ~f~v~Fp~f~Ki~VnG~~ahPLy~~Lk~~~~~~~~~~g~~~~~~~~~~~~~~~I~WNF~KFLVdrd 77 (77)
.|+++||++.+++.+|..++++|++|+..... ..+ ..|.|||+.||||++
T Consensus 94 ~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~---~~~-------------~~~p~~~~~~lid~~ 143 (170)
T 2p5q_A 94 RFKSEFPIFDKIDVNGENASPLYRFLKLGKWG---IFG-------------DDIQWNFAKFLVNKD 143 (170)
T ss_dssp HTCCCSCBBCCCBSSSTTBCHHHHHHHTHHHH---TTC-------------SCCCSTTCEEEECTT
T ss_pred hcCCCceeEeeeccCCCchHHHHHHHHhcCCC---ccC-------------CcccccccEEEECCC
Confidence 47889999999999999999999999865320 001 267899999999985
No 12
>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}
Probab=97.31 E-value=0.00029 Score=45.34 Aligned_cols=53 Identities=36% Similarity=0.736 Sum_probs=41.8
Q ss_pred CCcccceeeeEeEEecCCCCCHHHHHHHhcCCCCCCCCCCcccccccCCCCCCCccccceEEeecCC
Q psy1629 11 NNFNPGFQFFHKIQVNGENEHPLYTFLKSSCPPTRDGYRTPVTDLYYRPVRVSDVRWNFEKFLVDHR 77 (77)
Q Consensus 11 ~~f~v~Fp~f~Ki~VnG~~ahPLy~~Lk~~~~~~~~~~g~~~~~~~~~~~~~~~I~WNF~KFLVdrd 77 (77)
..|+++||++.+++++|+.++++|++|+...... +.. ..+|+|+.+.||||++
T Consensus 107 ~~~~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~-g~~-------------~~~i~~~P~~~lid~~ 159 (183)
T 2obi_A 107 AGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGK-GIL-------------GNAIKWNFTKFLIDKN 159 (183)
T ss_dssp HTTTCCSEEBCCCCCSSTTSCHHHHHHHTSTTTC-CSS-------------SSSCCSTTCEEEECTT
T ss_pred HHcCCCceEEeeeccCCcchhHHHHHhhccCCCC-Ccc-------------cccccccceEEEECCC
Confidence 3688999999999999999999999998775310 011 1268999999999985
No 13
>2cv8_A TRNA-splicing endonuclease; tRNA-intron endonuclease, structural genomics, NPPSFA; 2.80A {Sulfolobus tokodaii}
Probab=38.05 E-value=9.7 Score=25.01 Aligned_cols=17 Identities=24% Similarity=0.511 Sum_probs=15.3
Q ss_pred eeecCCCcccceeeeEe
Q psy1629 6 WVRPGNNFNPGFQFFHK 22 (77)
Q Consensus 6 ~vrpg~~f~v~Fp~f~K 22 (77)
+||||-+||.+|-+..+
T Consensus 103 ~v~~G~kfG~df~vY~~ 119 (180)
T 2cv8_A 103 VVRSGIKYGADFAVYTI 119 (180)
T ss_dssp EEEECGGGTSSEEEECS
T ss_pred EeccccccCceEEEEcC
Confidence 79999999999988765
No 14
>3ajv_B TRNA-splicing endonuclease; ENDA, archaea crenarch hydrolase; 1.70A {Aeropyrum pernix} PDB: 3p1z_B
Probab=36.51 E-value=10 Score=25.19 Aligned_cols=17 Identities=29% Similarity=0.563 Sum_probs=15.2
Q ss_pred eeecCCCcccceeeeEe
Q psy1629 6 WVRPGNNFNPGFQFFHK 22 (77)
Q Consensus 6 ~vrpg~~f~v~Fp~f~K 22 (77)
+||||-+||.+|-+..+
T Consensus 111 ~v~~G~kfG~dflvY~~ 127 (186)
T 3ajv_B 111 VVRSGLKFGSDFAVYRL 127 (186)
T ss_dssp EEEECGGGTSSEEEESS
T ss_pred EeccccccCceEEEECC
Confidence 79999999999988765
No 15
>2zyz_B TRNA-splicing endonuclease; crenarchaea, heterotetramer, RNA PROC endonuclease, hydrolase, tRNA processing; 1.70A {Pyrobaculum aerophilum}
Probab=35.84 E-value=10 Score=24.92 Aligned_cols=17 Identities=29% Similarity=0.542 Sum_probs=15.3
Q ss_pred eeecCCCcccceeeeEe
Q psy1629 6 WVRPGNNFNPGFQFFHK 22 (77)
Q Consensus 6 ~vrpg~~f~v~Fp~f~K 22 (77)
+||||-+||.+|-+..+
T Consensus 106 ~v~~G~kfG~df~vY~~ 122 (183)
T 2zyz_B 106 VVKSGLKFGALFSVYEK 122 (183)
T ss_dssp EEEECGGGTSSEEEESS
T ss_pred EeccccccCceEEEEcC
Confidence 79999999999988865
No 16
>1a79_A TRNA endonuclease; 2.28A {Methanocaldococcus jannaschii} SCOP: c.52.2.1 d.75.1.1
Probab=32.95 E-value=13 Score=24.15 Aligned_cols=17 Identities=18% Similarity=0.655 Sum_probs=15.5
Q ss_pred eeecCCCcccceeeeEe
Q psy1629 6 WVRPGNNFNPGFQFFHK 22 (77)
Q Consensus 6 ~vrpg~~f~v~Fp~f~K 22 (77)
+|+||-+||.+|-+..+
T Consensus 93 ~v~~G~kfG~df~vY~~ 109 (171)
T 1a79_A 93 IVKTGLKYGADFRLYER 109 (171)
T ss_dssp EEEECGGGTSSEEEECS
T ss_pred EecccccCCceEEEEeC
Confidence 79999999999998876
No 17
>3iey_A TRNA-splicing endonuclease; protein heterodimer, endonuclease, hydrolase, nuclease, tRNA processing, hydrolase-RNA binding protein complex; 2.11A {Nanoarchaeum equitans}
Probab=26.06 E-value=15 Score=23.72 Aligned_cols=17 Identities=12% Similarity=0.305 Sum_probs=15.0
Q ss_pred eeecCCCcccceeeeEe
Q psy1629 6 WVRPGNNFNPGFQFFHK 22 (77)
Q Consensus 6 ~vrpg~~f~v~Fp~f~K 22 (77)
+||||-+||.+|-+..+
T Consensus 72 ~vk~G~KFG~dF~vY~~ 88 (154)
T 3iey_A 72 TLGTALKFGADFRVYDI 88 (154)
T ss_dssp EEEEEGGGTEEEEEECS
T ss_pred EECCCCccCceEEEECC
Confidence 68999999999988765
No 18
>1r0v_A ENDA, tRNA-intron endonuclease, intron endonuclease; RNA splicing, X-RAY crystallography, translati hydrolase; 2.00A {Archaeoglobus fulgidus} SCOP: c.52.2.1 c.52.2.1 d.75.1.1 PDB: 1r11_A 1rlv_A 2gjw_A* 3p1y_A
Probab=25.63 E-value=12 Score=26.83 Aligned_cols=19 Identities=26% Similarity=0.653 Sum_probs=16.5
Q ss_pred eeecCCCcccceeeeEeEE
Q psy1629 6 WVRPGNNFNPGFQFFHKIQ 24 (77)
Q Consensus 6 ~vrpg~~f~v~Fp~f~Ki~ 24 (77)
+|+||-+||.+|-+..+-.
T Consensus 232 vvk~G~KFG~DFlvY~~~p 250 (305)
T 1r0v_A 232 VVKTGFKFGSEFRVYRKVE 250 (305)
T ss_dssp EEEECGGGTSSEEEESCCS
T ss_pred EeccCcccCcEEEEECCCC
Confidence 7999999999999887743
No 19
>2kyg_C Protein CBFA2T1; protein/protein, homodimer bound to monomer, protein binding; NMR {Homo sapiens}
Probab=24.81 E-value=25 Score=18.00 Aligned_cols=11 Identities=9% Similarity=0.268 Sum_probs=8.3
Q ss_pred eeecCCCcccc
Q psy1629 6 WVRPGNNFNPG 16 (77)
Q Consensus 6 ~vrpg~~f~v~ 16 (77)
-.|||.+|.+.
T Consensus 4 ~~r~gtGYVp~ 14 (38)
T 2kyg_C 4 DIGSASGYVPE 14 (38)
T ss_dssp CCSCCCSSCCS
T ss_pred cCCCCCCCCcH
Confidence 36899999763
No 20
>3r8n_I 30S ribosomal protein S9; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_I 3fih_I* 3iy8_I 3j18_I* 2wwl_I 3oar_I 3oaq_I 3ofb_I 3ofa_I 3ofp_I 3ofx_I 3ofy_I 3ofo_I 3r8o_I 4a2i_I 4gd1_I 4gd2_I 2qal_I* 1p6g_I 1p87_I ...
Probab=23.38 E-value=30 Score=21.99 Aligned_cols=21 Identities=29% Similarity=0.669 Sum_probs=15.5
Q ss_pred eeecCCCcccceeeeEeEEecCCCCCHHHH
Q psy1629 6 WVRPGNNFNPGFQFFHKIQVNGENEHPLYT 35 (77)
Q Consensus 6 ~vrpg~~f~v~Fp~f~Ki~VnG~~ahPLy~ 35 (77)
+++||++ +|.|||......|.
T Consensus 17 ~l~~G~G---------~i~VNg~~l~~yf~ 37 (127)
T 3r8n_I 17 FIKPGNG---------KIVINQRSLEQYFG 37 (127)
T ss_dssp EEEESCS---------CEEETTBCSTTTTT
T ss_pred EEEeCcE---------EEEECCEeHHHHcC
Confidence 6788874 69999987665553
Done!