Query psy1629
Match_columns 77
No_of_seqs 151 out of 1044
Neff 5.8
Searched_HMMs 13730
Date Fri Aug 16 17:35:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1629.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/1629hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2f8aa1 c.47.1.10 (A:12-195) G 99.9 1.6E-25 1.1E-29 151.7 5.8 74 4-77 83-159 (184)
2 d2b7ka1 c.47.1.10 (A:111-279) 72.3 0.79 5.8E-05 26.0 1.6 15 63-77 125-139 (169)
3 d1r0va2 c.52.2.1 (A:215-305) D 55.6 1.7 0.00012 24.6 0.7 17 6-22 18-34 (91)
4 d1a79a1 c.52.2.1 (A:83-179) Te 52.1 2.1 0.00015 24.2 0.8 17 6-22 19-35 (97)
5 d1w96a1 b.84.2.1 (A:451-566) A 37.9 13 0.00095 21.5 2.9 36 6-41 41-77 (116)
6 d2j9ga1 b.84.2.1 (A:331-446) B 36.9 7.2 0.00052 22.8 1.5 36 6-41 40-76 (116)
7 d1oj4a2 d.58.26.5 (A:164-283) 36.3 3.3 0.00024 23.9 -0.1 14 24-37 106-119 (120)
8 d1ulza1 b.84.2.1 (A:329-451) B 35.7 9.9 0.00072 22.3 2.1 36 6-41 42-78 (123)
9 d1fnoa3 d.58.19.1 (A:208-320) 29.1 12 0.00086 21.9 1.6 14 21-34 6-19 (113)
10 d1iz6a1 b.34.5.2 (A:2-70) Euka 26.1 7.2 0.00052 20.6 0.1 22 4-25 46-67 (69)
11 d2zdra1 b.85.1.1 (A:282-349) C 24.5 15 0.0011 18.9 1.3 10 3-12 28-37 (68)
12 d1mv8a1 a.100.1.4 (A:203-300) 22.8 9.6 0.0007 21.2 0.3 14 5-18 54-68 (98)
No 1
>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.91 E-value=1.6e-25 Score=151.65 Aligned_cols=74 Identities=42% Similarity=0.835 Sum_probs=61.8
Q ss_pred ceeeecCCCcccceeeeEeEEecCCCCCHHHHHHHhcCCCCCCCCCCc---ccccccCCCCCCCccccceEEeecCC
Q psy1629 4 VRWVRPGNNFNPGFQFFHKIQVNGENEHPLYTFLKSSCPPTRDGYRTP---VTDLYYRPVRVSDVRWNFEKFLVDHR 77 (77)
Q Consensus 4 l~~vrpg~~f~v~Fp~f~Ki~VnG~~ahPLy~~Lk~~~~~~~~~~g~~---~~~~~~~~~~~~~I~WNF~KFLVdrd 77 (77)
++++||+.+|+++||||+|++|||++|||||+||+++++......+.. -..+.|++...++|+||||||||||+
T Consensus 83 ~~~~~~~~~~~~~f~~~~ki~VnG~~a~ply~~Lk~~~~~~~~~~~~~~~~p~~~~~~~~~~~~i~WNFtKFLIdr~ 159 (184)
T d2f8aa1 83 LKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPD 159 (184)
T ss_dssp HHHTSSCTTCCCSSEEBCCCCCSSTTCCHHHHHHHHHSCSCTTCSSCCCSSGGGCCSSSCCTTCCCSTTCEEEECTT
T ss_pred hheeccccccccccccceeeeecCCCCCHHHHHHHhhCCCCccccccccccccccccccccCCCccceEEEEEECCC
Confidence 467899999999999999999999999999999999998543322211 13456888888999999999999996
No 2
>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=72.35 E-value=0.79 Score=26.02 Aligned_cols=15 Identities=20% Similarity=0.131 Sum_probs=12.8
Q ss_pred CCccccceEEeecCC
Q psy1629 63 SDVRWNFEKFLVDHR 77 (77)
Q Consensus 63 ~~I~WNF~KFLVdrd 77 (77)
..|.|+++.||||++
T Consensus 125 ~~i~h~~~~fLID~~ 139 (169)
T d2b7ka1 125 YLVDHSIFFYLMDPE 139 (169)
T ss_dssp -CTTTCCCEEEECTT
T ss_pred ceeeccceEEEECCC
Confidence 468999999999986
No 3
>d1r0va2 c.52.2.1 (A:215-305) Dimeric tRNA splicing endonuclease, domains 2 and 4 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=55.56 E-value=1.7 Score=24.60 Aligned_cols=17 Identities=29% Similarity=0.636 Sum_probs=15.1
Q ss_pred eeecCCCcccceeeeEe
Q psy1629 6 WVRPGNNFNPGFQFFHK 22 (77)
Q Consensus 6 ~vrpg~~f~v~Fp~f~K 22 (77)
+||+|-+||.+|-+.++
T Consensus 18 vv~~G~KfG~df~vY~~ 34 (91)
T d1r0va2 18 VVKTGFKFGSEFRVYRK 34 (91)
T ss_dssp EEEECGGGTSSEEEESC
T ss_pred EECCCcccCccEEEEcC
Confidence 68999999999999854
No 4
>d1a79a1 c.52.2.1 (A:83-179) Tetrameric tRNA splicing endonuclease, C-terminal domain {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=52.08 E-value=2.1 Score=24.18 Aligned_cols=17 Identities=18% Similarity=0.655 Sum_probs=15.2
Q ss_pred eeecCCCcccceeeeEe
Q psy1629 6 WVRPGNNFNPGFQFFHK 22 (77)
Q Consensus 6 ~vrpg~~f~v~Fp~f~K 22 (77)
+|+||-+||.+|-+..|
T Consensus 19 ~v~~G~kfG~df~vY~~ 35 (97)
T d1a79a1 19 IVKTGLKYGADFRLYER 35 (97)
T ss_dssp EEEECGGGTSSEEEECS
T ss_pred EEeecccCCeeEEEEec
Confidence 68999999999988864
No 5
>d1w96a1 b.84.2.1 (A:451-566) Acetyl-CoA carboxylase, BC-C subdomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=37.89 E-value=13 Score=21.46 Aligned_cols=36 Identities=19% Similarity=0.107 Sum_probs=26.0
Q ss_pred eeecCCCcccce-eeeEeEEecCCCCCHHHHHHHhcC
Q psy1629 6 WVRPGNNFNPGF-QFFHKIQVNGENEHPLYTFLKSSC 41 (77)
Q Consensus 6 ~vrpg~~f~v~F-p~f~Ki~VnG~~ahPLy~~Lk~~~ 41 (77)
.|.+|..-.+.| ||++|+-|-|++-...-+-|..+.
T Consensus 41 ~~~~G~~v~~~YDsmlAKlI~~g~~R~~Ai~rl~~aL 77 (116)
T d1w96a1 41 SVGNNGNIHSFSDSQFGHIFAFGENRQASRKHMVVAL 77 (116)
T ss_dssp EECCSCSSCSSCSEEEEEEEEEESSHHHHHHHHHHHH
T ss_pred ccccCcccccccChHHHHHHHHhccHHHHHHHHHHHH
Confidence 355655555557 999999999999877766665543
No 6
>d2j9ga1 b.84.2.1 (A:331-446) Biotin carboxylase (BC), C-domain {Escherichia coli [TaxId: 562]}
Probab=36.93 E-value=7.2 Score=22.78 Aligned_cols=36 Identities=19% Similarity=0.312 Sum_probs=26.8
Q ss_pred eeecCCCcccce-eeeEeEEecCCCCCHHHHHHHhcC
Q psy1629 6 WVRPGNNFNPGF-QFFHKIQVNGENEHPLYTFLKSSC 41 (77)
Q Consensus 6 ~vrpg~~f~v~F-p~f~Ki~VnG~~ahPLy~~Lk~~~ 41 (77)
+|.+|..-.+.| ||++|+-|.|++-...-+-|..+.
T Consensus 40 ~v~~G~~v~~~YDsmiAKlI~~g~~R~~Ai~~l~~aL 76 (116)
T d2j9ga1 40 HIYAGYTVPPYYDSMIGKLICYGENRDVAIARMKNAL 76 (116)
T ss_dssp CCCTTCEECSSSCSEEEEEEEEESSHHHHHHHHHHHH
T ss_pred eeeCCcEeccccchHHHHHhhcCCCHHHHHHHHHHHH
Confidence 455665556667 899999999999877777666654
No 7
>d1oj4a2 d.58.26.5 (A:164-283) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Escherichia coli [TaxId: 562]}
Probab=36.34 E-value=3.3 Score=23.88 Aligned_cols=14 Identities=29% Similarity=0.349 Sum_probs=12.4
Q ss_pred EecCCCCCHHHHHH
Q psy1629 24 QVNGENEHPLYTFL 37 (77)
Q Consensus 24 ~VnG~~ahPLy~~L 37 (77)
.|.|-+.||||++|
T Consensus 106 v~k~l~~sPl~~~l 119 (120)
T d1oj4a2 106 VAKGVNLSPLHRAM 119 (120)
T ss_dssp EEEEESBCHHHHTT
T ss_pred EeCCCCcCHHhHHh
Confidence 57899999999987
No 8
>d1ulza1 b.84.2.1 (A:329-451) Biotin carboxylase (BC), C-domain {Aquifex aeolicus [TaxId: 63363]}
Probab=35.67 E-value=9.9 Score=22.34 Aligned_cols=36 Identities=8% Similarity=0.076 Sum_probs=27.1
Q ss_pred eeecCCCcccce-eeeEeEEecCCCCCHHHHHHHhcC
Q psy1629 6 WVRPGNNFNPGF-QFFHKIQVNGENEHPLYTFLKSSC 41 (77)
Q Consensus 6 ~vrpg~~f~v~F-p~f~Ki~VnG~~ahPLy~~Lk~~~ 41 (77)
+|..|..-.+.| ||.+|+-|-|++-...-+-|..+.
T Consensus 42 ~v~~G~~v~~~YDsmiAKlIv~g~~R~~Ai~rl~~aL 78 (123)
T d1ulza1 42 AAARGFEVTPYYDSMIAKLITWAPTWDEAVERMRAAL 78 (123)
T ss_dssp CCCTTCBCCSSSCCEEEEEEEEESSHHHHHHHHHHHH
T ss_pred cccCCCEeccchhHHHHHHHhhCccHHHHHHHHHHHH
Confidence 466776666667 999999999999777666665543
No 9
>d1fnoa3 d.58.19.1 (A:208-320) Peptidase T (tripeptidase) {Salmonella typhimurium [TaxId: 90371]}
Probab=29.12 E-value=12 Score=21.92 Aligned_cols=14 Identities=36% Similarity=0.522 Sum_probs=12.0
Q ss_pred EeEEecCCCCCHHH
Q psy1629 21 HKIQVNGENEHPLY 34 (77)
Q Consensus 21 ~Ki~VnG~~ahPLy 34 (77)
++|.++|.+.||=+
T Consensus 6 a~i~i~G~svHPG~ 19 (113)
T d1fnoa3 6 VNIKIVGNNVHPGT 19 (113)
T ss_dssp EEEEEECBCCCGGG
T ss_pred EEEEEEEEEeCCcc
Confidence 68999999999943
No 10
>d1iz6a1 b.34.5.2 (A:2-70) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=26.14 E-value=7.2 Score=20.63 Aligned_cols=22 Identities=9% Similarity=-0.155 Sum_probs=15.7
Q ss_pred ceeeecCCCcccceeeeEeEEe
Q psy1629 4 VRWVRPGNNFNPGFQFFHKIQV 25 (77)
Q Consensus 4 l~~vrpg~~f~v~Fp~f~Ki~V 25 (77)
||-|+=|+.+..+||--+++||
T Consensus 46 ~k~i~tG~~~e~~~~s~d~vev 67 (69)
T d1iz6a1 46 AVGIFDGKVRSIVKPTSAEVDV 67 (69)
T ss_dssp EEETTTCCEEEEEEETTSEEEE
T ss_pred EEEcccCCEEEEEEcCCCEEec
Confidence 4556666777777887777776
No 11
>d2zdra1 b.85.1.1 (A:282-349) Capsule biosynthesis protein SiaC, C-terminal domain {Neisseria meningitidis [TaxId: 487]}
Probab=24.52 E-value=15 Score=18.91 Aligned_cols=10 Identities=40% Similarity=0.574 Sum_probs=7.6
Q ss_pred cceeeecCCC
Q psy1629 3 CVRWVRPGNN 12 (77)
Q Consensus 3 ~l~~vrpg~~ 12 (77)
-|.+.|||.+
T Consensus 28 dl~~~RP~~g 37 (68)
T d2zdra1 28 NLWVKRPGNG 37 (68)
T ss_dssp TEEEESCSCS
T ss_pred HeEEECCCCC
Confidence 3678899876
No 12
>d1mv8a1 a.100.1.4 (A:203-300) GDP-mannose 6-dehydrogenase, middle domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=22.77 E-value=9.6 Score=21.21 Aligned_cols=14 Identities=29% Similarity=0.643 Sum_probs=9.6
Q ss_pred eeeecCCCcc-ccee
Q psy1629 5 RWVRPGNNFN-PGFQ 18 (77)
Q Consensus 5 ~~vrpg~~f~-v~Fp 18 (77)
.|++||-+|| ..||
T Consensus 54 ~~~~pG~G~GG~Clp 68 (98)
T d1mv8a1 54 YYMRPGFAFGGSCLP 68 (98)
T ss_dssp TTCSCCSCCCSSSHH
T ss_pred cccCCcccCCccccc
Confidence 4789998774 3455
Done!