RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1629
(77 letters)
>gnl|CDD|238207 cd00340, GSH_Peroxidase, Glutathione (GSH) peroxidase family;
tetrameric selenoenzymes that catalyze the reduction of
a variety of hydroperoxides including lipid peroxidases,
using GSH as a specific electron donor substrate. GSH
peroxidase contains one selenocysteine residue per
subunit, which is involved in catalysis. Different
isoenzymes are known in mammals,which are involved in
protection against reactive oxygen species, redox
regulation of many metabolic processes, peroxinitrite
scavenging, and modulation of inflammatory processes.
Length = 152
Score = 66.8 bits (164), Expect = 6e-16
Identities = 26/64 (40%), Positives = 30/64 (46%), Gaps = 16/64 (25%)
Query: 12 NFNPGFQFFHKIQVNGENEHPLYTFLKSSCPPTRDGYRTPVTDLYYRPVRVSDVRWNFEK 71
N+ F F KI VNGEN HPLY +LK P D++WNF K
Sbjct: 83 NYGVTFPMFAKIDVNGENAHPLYKYLKEEAPGLLG----------------KDIKWNFTK 126
Query: 72 FLVD 75
FLVD
Sbjct: 127 FLVD 130
>gnl|CDD|223463 COG0386, BtuE, Glutathione peroxidase [Posttranslational
modification, protein turnover, chaperones].
Length = 162
Score = 64.2 bits (157), Expect = 7e-15
Identities = 26/65 (40%), Positives = 31/65 (47%), Gaps = 15/65 (23%)
Query: 11 NNFNPGFQFFHKIQVNGENEHPLYTFLKSSCPPTRDGYRTPVTDLYYRPVRVSDVRWNFE 70
N+ F F KI VNG+N HPLY +LK P G D++WNF
Sbjct: 85 LNYGVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGG---------------KDIKWNFT 129
Query: 71 KFLVD 75
KFLVD
Sbjct: 130 KFLVD 134
>gnl|CDD|182585 PRK10606, btuE, putative glutathione peroxidase; Provisional.
Length = 183
Score = 55.6 bits (134), Expect = 2e-11
Identities = 26/63 (41%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 17 FQFFHKIQVNGENEHPLYTFLKSSCP----PTRDGYRTPVTDLYYRPVRVSDVRWNFEKF 72
F F KI+VNGE HPLY L ++ P P G+ + P+ D+ WNFEKF
Sbjct: 91 FPMFSKIEVNGEGRHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDILWNFEKF 150
Query: 73 LVD 75
LV
Sbjct: 151 LVG 153
>gnl|CDD|201117 pfam00255, GSHPx, Glutathione peroxidase.
Length = 108
Score = 50.8 bits (122), Expect = 4e-10
Identities = 19/32 (59%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 7 VRPGNNFNPGFQFFHKIQVNGENEHPLYTFLK 38
RPG + F F KI VNGEN HPLY FLK
Sbjct: 78 FRPGG-YGVTFPIFSKIDVNGENAHPLYKFLK 108
>gnl|CDD|173495 PTZ00256, PTZ00256, glutathione peroxidase; Provisional.
Length = 183
Score = 52.5 bits (126), Expect = 4e-10
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 11/64 (17%)
Query: 12 NFNPGFQFFHKIQVNGENEHPLYTFLKSSCPPTRDGYRTPVTDLYYRPVRVSDVRWNFEK 71
FN F F KI+VNGEN H +Y +L+ + ++ + P WNF K
Sbjct: 103 KFNVDFPLFQKIEVNGENTHEIYKYLRRNSE----LFQNNTNEARQIP-------WNFAK 151
Query: 72 FLVD 75
FL+D
Sbjct: 152 FLID 155
>gnl|CDD|240248 PTZ00056, PTZ00056, glutathione peroxidase; Provisional.
Length = 199
Score = 51.4 bits (123), Expect = 1e-09
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 11/65 (16%)
Query: 11 NNFNPGFQFFHKIQVNGENEHPLYTFLKSSCPPTRDGYRTPVTDLYYRPVRVSDVRWNFE 70
+ + FF I+VNGEN H L+ FLK++C ++ + + WNF
Sbjct: 99 DKNKIKYNFFEPIEVNGENTHELFKFLKANCD-----------SMHDENGTLKAIGWNFG 147
Query: 71 KFLVD 75
KFLV+
Sbjct: 148 KFLVN 152
>gnl|CDD|166053 PLN02412, PLN02412, probable glutathione peroxidase.
Length = 167
Score = 45.4 bits (107), Expect = 2e-07
Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 26/77 (33%)
Query: 9 PGNN----------FNPGFQFFHKIQVNGENEHPLYTFLKSSCPPTRDGYRTPVTDLYYR 58
PG+N F F F K+ VNG+N PLY +LK+ + G
Sbjct: 78 PGSNEEIQQTVCTRFKAEFPIFDKVDVNGKNTAPLYKYLKAE----KGGL---------- 123
Query: 59 PVRVSDVRWNFEKFLVD 75
++WNF KFLV
Sbjct: 124 --FGDAIKWNFTKFLVS 138
>gnl|CDD|178021 PLN02399, PLN02399, phospholipid hydroperoxide glutathione
peroxidase.
Length = 236
Score = 44.1 bits (104), Expect = 6e-07
Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 16/63 (25%)
Query: 13 FNPGFQFFHKIQVNGENEHPLYTFLKSSCPPTRDGYRTPVTDLYYRPVRVSDVRWNFEKF 72
F F F K+ VNG + P+Y FLKS+ G+ + DL ++WNFEKF
Sbjct: 162 FKAEFPIFDKVDVNGPSTAPVYQFLKSNA----GGF---LGDL---------IKWNFEKF 205
Query: 73 LVD 75
LVD
Sbjct: 206 LVD 208
>gnl|CDD|131592 TIGR02540, gpx7, putative glutathione peroxidase Gpx7. This model
represents one of several families of known and probable
glutathione peroxidases. This family is restricted to
animals and designated GPX7.
Length = 153
Score = 31.7 bits (72), Expect = 0.017
Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 20/64 (31%)
Query: 12 NFNPGFQFFHKIQVNGENEHPLYTFLKSSCPPTRDGYRTPVTDLYYRPVRVSDVRWNFEK 71
N+ F F KI++ G P + FL S + RWNF K
Sbjct: 84 NYGVTFPMFSKIKILGSEAEPAFRFLVDSSK--------------------KEPRWNFWK 123
Query: 72 FLVD 75
+LV+
Sbjct: 124 YLVN 127
>gnl|CDD|237166 PRK12666, PRK12666, putative monovalent cation/H+ antiporter
subunit D; Reviewed.
Length = 528
Score = 26.7 bits (60), Expect = 1.1
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 3 CVRWVRPGNNFNPGFQFF 20
W R G +F+ FQF
Sbjct: 101 LAGWDRAGPHFHALFQFQ 118
>gnl|CDD|200509 cd11248, Sema_MET_like, The Sema domain, a protein interacting
module, of MET and RON receptor tyrosine kinases. This
family includes MET and RON receptor tyrosine kinases.
MET is encoded by the c-met protooncogene. MET is the
receptor for hepatocyte growth factor/scatter factor
(HGF/SF). HGF/SF and MET regulates multiple cellular
events and are essential for the development of several
tissues and organs, including the placenta, liver, and
several groups of skeletal muscles. RON receptor
tyrosine kinase is a Macrophage-stimulating protein
(MSP) receptor. Upon binding of MSP, RON is activated
via autophosphorylation within its kinase catalytic
domain, resulting in a variety of effects including
proliferation, tubular morphogenesis, angiogenesis,
cellular motility and invasiveness. By interacting with
downstream signaling molecules, it regulates macrophage
migration, phagocytosis, and nitric oxide production.
MET and RON receptors have been implicated in cancer
development and migration. They are composed of
alpha-beta heterodimers. The extracellular alpha chain
is disulfide linked to the beta chain, which contains an
extracellular ligand-binding region with a Sema domain,
a PSI domain and four IPT repeats, a transmembrane
segment, and an intracellular catalytic tyrosine kinase
domain. The Sema domain is necessary for receptor
dimerization and activation.
Length = 467
Score = 26.6 bits (59), Expect = 1.3
Identities = 11/20 (55%), Positives = 11/20 (55%)
Query: 39 SSCPPTRDGYRTPVTDLYYR 58
SSC T YRT VT Y R
Sbjct: 362 SSCEATCKEYRTEVTKPYQR 381
>gnl|CDD|222999 PHA03142, PHA03142, helicase-primase primase subunit BSLF1;
Provisional.
Length = 835
Score = 26.1 bits (58), Expect = 1.6
Identities = 10/16 (62%), Positives = 13/16 (81%), Gaps = 1/16 (6%)
Query: 28 ENEHPLYTFLKSSCPP 43
E +HP+Y F KS+CPP
Sbjct: 533 EPDHPVY-FFKSACPP 547
>gnl|CDD|222991 PHA03119, PHA03119, helicase-primase primase subunit; Provisional.
Length = 1085
Score = 25.6 bits (56), Expect = 2.5
Identities = 10/16 (62%), Positives = 11/16 (68%), Gaps = 1/16 (6%)
Query: 29 NEHPLYTFLKSSCPPT 44
N HP Y F K+SCPP
Sbjct: 707 NSHPCY-FYKTSCPPQ 721
>gnl|CDD|235393 PRK05294, carB, carbamoyl phosphate synthase large subunit;
Reviewed.
Length = 1066
Score = 25.1 bits (56), Expect = 3.7
Identities = 5/7 (71%), Positives = 6/7 (85%)
Query: 66 RWNFEKF 72
R+ FEKF
Sbjct: 360 RFAFEKF 366
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.143 0.496
Gapped
Lambda K H
0.267 0.0810 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,038,012
Number of extensions: 293379
Number of successful extensions: 307
Number of sequences better than 10.0: 1
Number of HSP's gapped: 299
Number of HSP's successfully gapped: 16
Length of query: 77
Length of database: 10,937,602
Length adjustment: 46
Effective length of query: 31
Effective length of database: 8,897,318
Effective search space: 275816858
Effective search space used: 275816858
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.0 bits)