RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1629
(77 letters)
>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics,
structural genomics consortium, SGC, oxidoreductase;
1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A
Length = 208
Score = 92.8 bits (231), Expect = 1e-25
Identities = 33/78 (42%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 1 MNCVRWVRPGNNFNPGFQFFHKIQVNGENEHPLYTFLKSSCPPTRD---GYRTPVTDLYY 57
+N +++VRPG F P F F K +VNG HPL+ FL+ + P D T + +
Sbjct: 103 LNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITW 162
Query: 58 RPVRVSDVRWNFEKFLVD 75
PV +DV WNFEKFLV
Sbjct: 163 SPVCRNDVAWNFEKFLVG 180
>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold,
epididymal androgen related protein, struc genomics,
structural genomics consortium; 2.00A {Homo sapiens}
Length = 215
Score = 90.1 bits (224), Expect = 1e-24
Identities = 34/71 (47%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 5 RWVRPGNNFNPGFQFFHKIQVNGENEHPLYTFLKSSCPPTRDGYRTPVTDLYYRPVRVSD 64
++VRPG F P FQ F K VNGE E +++FLK SCP + + PV+V D
Sbjct: 115 KYVRPGGGFVPSFQLFEKGDVNGEKEQKVFSFLKHSCPHPS-EILGTFKSISWDPVKVHD 173
Query: 65 VRWNFEKFLVD 75
+RWNFEKFLV
Sbjct: 174 IRWNFEKFLVG 184
>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort
oxidoreductase, secreted, selenium, selenocysteine;
1.85A {Homo sapiens}
Length = 207
Score = 89.7 bits (223), Expect = 2e-24
Identities = 38/71 (53%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Query: 5 RWVRPGNNFNPGFQFFHKIQVNGENEHPLYTFLKSSCPPTRDGYRTPVTDLYYRPVRVSD 64
++VRPG F P FQ F K VNGE E YTFLK+SCPPT L++ P++V D
Sbjct: 97 KYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTS-ELLGTSDRLFWEPMKVHD 155
Query: 65 VRWNFEKFLVD 75
+RWNFEKFLV
Sbjct: 156 IRWNFEKFLVG 166
>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase,
lipid peroxidase, schistosoma detoxification pathway;
1.00A {Schistosoma mansoni} PDB: 2wgr_A
Length = 169
Score = 66.5 bits (163), Expect = 7e-16
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 16/64 (25%)
Query: 12 NFNPGFQFFHKIQVNGENEHPLYTFLKSSCPPTRDGYRTPVTDLYYRPVRVSDVRWNFEK 71
+ F F KI+VNG + LY FLKS T ++++WNF K
Sbjct: 93 KYGVQFDMFSKIKVNGSDADDLYKFLKSRQHGTLT----------------NNIKWNFSK 136
Query: 72 FLVD 75
FLVD
Sbjct: 137 FLVD 140
>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A
{Populus trichocarpa x populusdeltoides} PDB: 2p5r_A
Length = 170
Score = 66.4 bits (163), Expect = 7e-16
Identities = 24/64 (37%), Positives = 27/64 (42%), Gaps = 16/64 (25%)
Query: 12 NFNPGFQFFHKIQVNGENEHPLYTFLKSSCPPTRDGYRTPVTDLYYRPVRVSDVRWNFEK 71
F F F KI VNGEN PLY FLK D++WNF K
Sbjct: 94 RFKSEFPIFDKIDVNGENASPLYRFLKLGKWGIFG----------------DDIQWNFAK 137
Query: 72 FLVD 75
FLV+
Sbjct: 138 FLVN 141
>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA)
sandwich, glutaredoxin fold, oxidoreductase; 1.41A
{Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A
Length = 187
Score = 66.5 bits (163), Expect = 1e-15
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 15/64 (23%)
Query: 12 NFNPGFQFFHKIQVNGENEHPLYTFLKSSCPPTRDGYRTPVTDLYYRPVRVSDVRWNFEK 71
F F KI VNGEN HPLY ++K + P + ++WNF
Sbjct: 108 KFKAEFPIMAKINVNGENAHPLYEYMKKTKPGI---------------LATKAIKWNFTS 152
Query: 72 FLVD 75
FL+D
Sbjct: 153 FLID 156
>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione,
dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}
Length = 190
Score = 66.1 bits (162), Expect = 1e-15
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 15/64 (23%)
Query: 12 NFNPGFQFFHKIQVNGENEHPLYTFLKSSCPPTRDGYRTPVTDLYYRPVRVSDVRWNFEK 71
F F KI VNGEN HPLY ++K + P ++ ++WNF
Sbjct: 110 KFKAEFPIMAKINVNGENAHPLYEYMKKTKPGI---------------LKTKAIKWNFTS 154
Query: 72 FLVD 75
FL+D
Sbjct: 155 FLID 158
>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase,
peroxidase, redox-ACT center; 2.02A {Saccharomyces
cerevisiae}
Length = 171
Score = 65.7 bits (161), Expect = 2e-15
Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 15/64 (23%)
Query: 12 NFNPGFQFFHKIQVNGENEHPLYTFLKSSCPPTRDGYRTPVTDLYYRPVRVSDVRWNFEK 71
N+ F KI VNG NE P+Y FLKS + + ++WNFEK
Sbjct: 93 NYGVTFPIMKKIDVNGGNEDPVYKFLKSQKSG---------------MLGLRGIKWNFEK 137
Query: 72 FLVD 75
FLVD
Sbjct: 138 FLVD 141
>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane,
oxidoreductase, transmembrane; 1.80A {Homo sapiens} PDB:
3cyn_A
Length = 180
Score = 64.2 bits (157), Expect = 6e-15
Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 20/64 (31%)
Query: 12 NFNPGFQFFHKIQVNGENEHPLYTFLKSSCPPTRDGYRTPVTDLYYRPVRVSDVRWNFEK 71
N+ F FHKI++ G P + FL S + RWNF K
Sbjct: 100 NYGVTFPIFHKIKILGSEGEPAFRFLVDSSK--------------------KEPRWNFWK 139
Query: 72 FLVD 75
+LV+
Sbjct: 140 YLVN 143
>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX,
phospholipid hydroperoxidase, struc genomics, structural
genomics consortium, SGC; 2.00A {Homo sapiens}
Length = 181
Score = 63.8 bits (156), Expect = 9e-15
Identities = 15/64 (23%), Positives = 22/64 (34%), Gaps = 20/64 (31%)
Query: 12 NFNPGFQFFHKIQVNGENEHPLYTFLKSSCPPTRDGYRTPVTDLYYRPVRVSDVRWNFEK 71
++ F F KI V G HP + +L + + WNF K
Sbjct: 111 TYSVSFPMFSKIAVTGTGAHPAFKYLAQTSG--------------------KEPTWNFWK 150
Query: 72 FLVD 75
+LV
Sbjct: 151 YLVA 154
>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase
(GPX4); human GPX4, selenoprotein, thioredoxin-fold,
anti-oxidatve defense system; 1.55A {Homo sapiens}
Length = 183
Score = 63.1 bits (154), Expect = 2e-14
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 16/65 (24%)
Query: 12 NFNPGFQFFHKIQVNGENEHPLYTFLKSSCP-PTRDGYRTPVTDLYYRPVRVSDVRWNFE 70
+N F F KI VNG++ HPL+ ++K G + ++WNF
Sbjct: 108 GYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILG---------------NAIKWNFT 152
Query: 71 KFLVD 75
KFL+D
Sbjct: 153 KFLID 157
>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase;
GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}
Length = 185
Score = 63.1 bits (154), Expect = 2e-14
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 14/64 (21%)
Query: 12 NFNPGFQFFHKIQVNGENEHPLYTFLKSSCPPTRDGYRTPVTDLYYRPVRVSDVRWNFEK 71
+N F F KI VNG++ HPL+ ++K P G + ++WNF K
Sbjct: 110 GYNVKFDMFSKICVNGDDAHPLWKWMKIQ--PKGKGILG------------NAIKWNFTK 155
Query: 72 FLVD 75
FL+D
Sbjct: 156 FLID 159
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.5 bits (63), Expect = 0.20
Identities = 16/60 (26%), Positives = 21/60 (35%), Gaps = 20/60 (33%)
Query: 25 VNGENE-----HP--LYTF----LKSSCPPTRDGYRTPVTDLYYRPVRVSDVRWNFEKFL 73
VNG P LY K+ P D R P ++ R ++ S R FL
Sbjct: 371 VNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSE---RKLKFS-NR-----FL 421
>3qve_A HMG box-containing protein 1; SGC, HMG box transcription factor 1,
HBP1, AXH domain, struc genomics consortium,
transcription; 2.04A {Homo sapiens} PDB: 1v06_A
Length = 139
Score = 27.9 bits (61), Expect = 0.24
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
Query: 12 NFNPGFQFFHKIQVNGENEHPLYTFLK--SSCPP--TRDGYRTPVTDL 55
F+PG + V + +HP Y K SS P T + P ++
Sbjct: 78 TFDPGTVEDGLLTVECKLDHPFYVKNKGWSSFYPSLTVVQHGIPCCEV 125
>1f46_A Cell division protein ZIPA; transmembrane, inner membrane, cell
cycle; 1.50A {Escherichia coli} SCOP: d.129.4.1 PDB:
1f47_B 1s1j_A* 1s1s_A* 1y2g_A* 1f7w_A 1f7x_A 1y2f_A*
Length = 140
Score = 24.8 bits (54), Expect = 2.8
Identities = 12/69 (17%), Positives = 22/69 (31%), Gaps = 9/69 (13%)
Query: 14 NPGFQF-----FHKIQVNGENEHPLYTFLKSSCPPT----RDGYRTPVTDLYYRPVRVSD 64
GF F +H+ + L++ P T + TP ++ + D
Sbjct: 30 QAGFIFGDMNIYHRHLSPDGSGPALFSLANMVKPGTFDPEMKDFTTPGVTIFMQVPSYGD 89
Query: 65 VRWNFEKFL 73
F+ L
Sbjct: 90 ELQLFKLML 98
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase,
thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP:
a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2
PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A*
1jdb_B* 1kee_A* 1t36_A*
Length = 1073
Score = 24.8 bits (55), Expect = 3.6
Identities = 6/7 (85%), Positives = 7/7 (100%)
Query: 66 RWNFEKF 72
R+NFEKF
Sbjct: 361 RFNFEKF 367
>1hjs_A Beta-1,4-galactanase; 4-galactanases, family 53 glycoside
hydrolase, thermostability, PH optimum, CLAN GH-A,
thermophIle, alkalophIle; HET: NAG EPE; 1.87A {Thielavia
heterothallica} SCOP: c.1.8.3 PDB: 1hju_A* 1hjq_A*
Length = 332
Score = 24.3 bits (52), Expect = 4.8
Identities = 12/73 (16%), Positives = 19/73 (26%), Gaps = 6/73 (8%)
Query: 4 VRWVRPGNNFNPGFQFFHKIQVNGENEHPLYTFLKSSCPPTRDGYRTPVTDL---YYRPV 60
V GN G + N N + L S+ +D +P +
Sbjct: 127 PTIVSIGNEIRAGLLWPTGRTENWAN---IARLLHSAAWGIKDSSLSPKPKIMIHLDNGW 183
Query: 61 RVSDVRWNFEKFL 73
W + L
Sbjct: 184 DWGTQNWWYTNVL 196
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.143 0.496
Gapped
Lambda K H
0.267 0.0483 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,280,683
Number of extensions: 59389
Number of successful extensions: 148
Number of sequences better than 10.0: 1
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 19
Length of query: 77
Length of database: 6,701,793
Length adjustment: 46
Effective length of query: 31
Effective length of database: 5,417,427
Effective search space: 167940237
Effective search space used: 167940237
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.0 bits)