RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1629
         (77 letters)



>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 184

 Score = 59.2 bits (142), Expect = 2e-13
 Identities = 33/78 (42%), Positives = 44/78 (56%), Gaps = 3/78 (3%)

Query: 1   MNCVRWVRPGNNFNPGFQFFHKIQVNGENEHPLYTFLKSSCPPTRD---GYRTPVTDLYY 57
           +N +++VRPG  F P F  F K +VNG   HPL+ FL+ + P   D      T    + +
Sbjct: 80  LNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITW 139

Query: 58  RPVRVSDVRWNFEKFLVD 75
            PV  +DV WNFEKFLV 
Sbjct: 140 SPVCRNDVAWNFEKFLVG 157


>d1iznb_ e.43.1.2 (B:) Capz beta-1 subunit {Chicken (Gallus
          gallus) [TaxId: 9031]}
          Length = 270

 Score = 23.2 bits (50), Expect = 4.4
 Identities = 9/22 (40%), Positives = 13/22 (59%), Gaps = 2/22 (9%)

Query: 41 CPPTRDG--YRTPVTDLYYRPV 60
          C   RDG  YR+P ++ Y  P+
Sbjct: 61 CDYNRDGDSYRSPWSNKYDPPL 82


>d3elia1 d.129.3.5 (A:2-144) Uncharacterized protein SPO3351
           {Silicibacter pomeroyi [TaxId: 89184]}
          Length = 143

 Score = 22.4 bits (47), Expect = 6.8
 Identities = 10/58 (17%), Positives = 17/58 (29%)

Query: 13  FNPGFQFFHKIQVNGENEHPLYTFLKSSCPPTRDGYRTPVTDLYYRPVRVSDVRWNFE 70
           F     +F  +       + +   +    PP   G+     D   R    S V +  E
Sbjct: 46  FTRLGPWFSVMVNGEGQRYKVSGQVTHVKPPQSVGFTWGWHDDDDRRGAESHVMFIVE 103


>d1ud2a1 b.71.1.1 (A:391-480) Bacterial alpha-Amylase {Bacillus
          sp., ksm-k38 [TaxId: 1409]}
          Length = 90

 Score = 21.9 bits (47), Expect = 7.7
 Identities = 5/15 (33%), Positives = 8/15 (53%)

Query: 2  NCVRWVRPGNNFNPG 16
          + V W R G++  P 
Sbjct: 14 DVVGWTREGSSSRPN 28


>d1c8da_ b.121.5.2 (A:) Parvovirus (panleukopenia virus) capsid
           protein {Canine parvovirus [TaxId: 10788]}
          Length = 548

 Score = 22.2 bits (47), Expect = 9.0
 Identities = 11/47 (23%), Positives = 13/47 (27%), Gaps = 2/47 (4%)

Query: 8   RPGNNFNPGFQFFHKIQVNGENEHPLYTFLKSSCPPTRDGYRTPVTD 54
           R G+ F  G  FF          H   T      PP  +       D
Sbjct: 220 RTGDEFATGTFFFDCKPCR--LTHTWQTNRALGLPPFLNSLPQSEGD 264


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.143    0.496 

Gapped
Lambda     K      H
   0.267   0.0495    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 338,014
Number of extensions: 13389
Number of successful extensions: 41
Number of sequences better than 10.0: 1
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 10
Length of query: 77
Length of database: 2,407,596
Length adjustment: 44
Effective length of query: 33
Effective length of database: 1,803,476
Effective search space: 59514708
Effective search space used: 59514708
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.4 bits)