BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16294
(486 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 137 bits (345), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 76/176 (43%), Positives = 99/176 (56%), Gaps = 21/176 (11%)
Query: 218 ETNCHWKDCGLEFGTQDILVKHINNDHIHANKKSFICRWEDCTRDEKPFKAQYMLVVHMR 277
ET+C W C EF +Q+ LV HIN++HIH +K F+C W C+R+ +PFKAQYMLVVHMR
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR 60
Query: 278 RHTGEKPHKCTDLEAFDTSSRVAARRIRGWKISRRISDLIPVRNRTRVNILAVVKRLVMR 337
RHTGEKPHKCT F+ + +R L ++ R + ++ M
Sbjct: 61 RHTGEKPHKCT----FEGCRKSYSR-------------LENLKTHLRSH---TGEKPYMC 100
Query: 338 RIELNIRTELTLMSLNVQFEILSRPKLKPYVCGEENCTKRYTDPSSLRKHIKTVHA 393
E + S + + + KPYVC CTKRYTDPSSLRKH+KTVH
Sbjct: 101 EHE-GCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 48/96 (50%), Gaps = 15/96 (15%)
Query: 218 ETNCHW----------KDCGLEFGTQDILVKHINNDHIHA-NKKSFICRWEDCTRDEKPF 266
E +C W K C F T LV H+ +H+ + + +C WE+C R+ K F
Sbjct: 13 ELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSF 72
Query: 267 KAQYMLVVHMRRHTGEKPHKCTDLEAFDTSSRVAAR 302
KA+Y LV H+R HTGEKP C F ++ AR
Sbjct: 73 KAKYKLVNHIRVHTGEKPFPC----PFPGCGKIFAR 104
>pdb|2EJ4|A Chain A, Functional And Structural Basis Of Nuclear Localization
Signal In Zic3 Zinc Finger Domain: A Role Of Conserved
Tryptophan Residue In The Zinc Finger Domain
Length = 95
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 41/77 (53%), Gaps = 11/77 (14%)
Query: 218 ETNCHW----------KDCGLEFGTQDILVKHINNDHIHA-NKKSFICRWEDCTRDEKPF 266
E +C W K C F T LV H+ +H+ + + +C WE+C R+ K F
Sbjct: 13 ELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSF 72
Query: 267 KAQYMLVVHMRRHTGEK 283
KA+Y LV H+R HTGEK
Sbjct: 73 KAKYKLVNHIRVHTGEK 89
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 73/186 (39%), Gaps = 27/186 (14%)
Query: 208 GDKYEPGDFVETNCHWKDCGLEFGTQDILVKHINNDHIHANKKSFICRWEDCTRDEKPFK 267
G+K P + C + DCG + L H+ H +K F C+ E C EK F
Sbjct: 2 GEKALPVVYKRYICSFADCGAAYNKNWKLQAHLCK---HTGEKPFPCKEEGC---EKGFT 55
Query: 268 AQYMLVVHMRRHTGEKPHKCTDLEAFDTSSRVAARRIRGWKISRRISDLIPVRNRTRVNI 327
+ + L H HTGEK C D + D A + + + ++ V
Sbjct: 56 SLHHLTRHSLTHTGEKNFTC-DSDGCDLRFTTKAN------MKKHFNRFHNIKICVYVCH 108
Query: 328 LAVVKRLVMRRIELNIRTELTLMSLNVQFEILSRPKLKPYVCGEENCTKRYTDPSSLRKH 387
+ + +L + QF S + PY C E C KR++ PS L++H
Sbjct: 109 FENCGKAFKKHNQLKVH----------QF---SHTQQLPYECPHEGCDKRFSLPSRLKRH 155
Query: 388 IKTVHA 393
K VHA
Sbjct: 156 EK-VHA 160
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 258 DCTRDEKPFKAQYMLVVHMRRHTGEKPHKCTDLE 291
+C+ K F++ Y L +H+R HTGEKP+KC E
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCE 39
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 41/98 (41%), Gaps = 17/98 (17%)
Query: 221 CHWKDCGLEFGTQDILVKHINNDHIHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHT 280
C + C F D L +HI IH +K F CR C R+ F L H+R HT
Sbjct: 7 CPVESCDRRFSRSDELTRHIR---IHTGQKPFQCRI--CMRN---FSRSDHLTTHIRTHT 58
Query: 281 GEKPHKCTDLEAFDTSSRVAAR---RIRGWKISRRISD 315
GEKP C D R AR R R KI R D
Sbjct: 59 GEKPFAC------DICGRKFARSDERKRHTKIHLRQKD 90
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 31/67 (46%), Gaps = 8/67 (11%)
Query: 221 CHWKDCGLEFGTQDILVKHINNDHIHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHT 280
C + C F D L +HI IH +K F CR C R+ F L H+R HT
Sbjct: 6 CPVESCDRRFSRSDELTRHIR---IHTGQKPFQCRI--CMRN---FSRSDHLTTHIRTHT 57
Query: 281 GEKPHKC 287
GEKP C
Sbjct: 58 GEKPFAC 64
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 31/67 (46%), Gaps = 8/67 (11%)
Query: 221 CHWKDCGLEFGTQDILVKHINNDHIHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHT 280
C + C F D L +HI IH +K F CR C R+ F L H+R HT
Sbjct: 7 CPVESCDRRFSRSDELTRHIR---IHTGQKPFQCRI--CMRN---FSRSDHLTTHIRTHT 58
Query: 281 GEKPHKC 287
GEKP C
Sbjct: 59 GEKPFAC 65
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 38.9 bits (89), Expect = 0.007, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
Query: 221 CHWKDCGLEFGTQDILVKHINNDHIHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHT 280
C + DCG + L H++ H +K F C+ E C EK F + + L H HT
Sbjct: 6 CSFADCGAAYNKNWKLQAHLSK---HTGEKPFPCKEEGC---EKGFTSLHHLTRHSLTHT 59
Query: 281 GEKPHKC 287
GEK C
Sbjct: 60 GEKNFTC 66
Score = 33.5 bits (75), Expect = 0.25, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 250 KSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCTD 289
K +IC + DC + + L H+ +HTGEKP C +
Sbjct: 2 KRYICSFADCG---AAYNKNWKLQAHLSKHTGEKPFPCKE 38
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 58/145 (40%), Gaps = 37/145 (25%)
Query: 258 DCTRDEKPFKAQYMLVVHMRRHTGEKPHKCTDLEAFDTSSRVAARRIRGWKISRRISDLI 317
+C K F ++Y L VH R+HTGEKP +C + K R +L+
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECP----------------KCGKCYFRKENLL 52
Query: 318 PVRNRTRVN------ILAVVKRLVMRRIELNIRTELTLMSLNVQFEILSRPKLKPYVCGE 371
R +N +V + RR+EL + ++S PY C
Sbjct: 53 EHEARNCMNRSEQVFTCSVCQETFRRRMELRL-------------HMVSHTGEMPYKCS- 98
Query: 372 ENCTKRYTDPSSLRKHIKTVHAPAS 396
+C++++ L+ H+ +H+ S
Sbjct: 99 -SCSQQFMQKKDLQSHMIKLHSGPS 122
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 40/98 (40%), Gaps = 17/98 (17%)
Query: 221 CHWKDCGLEFGTQDILVKHINNDHIHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHT 280
C + C F L +HI IH +K F CR C R+ F L H+R HT
Sbjct: 7 CPVESCDRRFSQSGSLTRHIR---IHTGQKPFQCRI--CMRN---FSRSDHLTTHIRTHT 58
Query: 281 GEKPHKCTDLEAFDTSSRVAAR---RIRGWKISRRISD 315
GEKP C D R AR R R KI R D
Sbjct: 59 GEKPFAC------DICGRKFARSDERKRHTKIHLRQKD 90
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKHIK 389
+PY C E+C +R++ SL +HI+
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIR 27
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 40/98 (40%), Gaps = 17/98 (17%)
Query: 221 CHWKDCGLEFGTQDILVKHINNDHIHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHT 280
C + C F L +HI IH +K F CR C R+ F L H+R HT
Sbjct: 7 CPVESCDRRFSDSSNLTRHIR---IHTGQKPFQCRI--CMRN---FSRSDHLTTHIRTHT 58
Query: 281 GEKPHKCTDLEAFDTSSRVAAR---RIRGWKISRRISD 315
GEKP C D R AR R R KI R D
Sbjct: 59 GEKPFAC------DICGRKFARSDERKRHTKIHLRQKD 90
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKHIK 389
+PY C E+C +R++D S+L +HI+
Sbjct: 3 RPYACPVESCDRRFSDSSNLTRHIR 27
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 31/67 (46%), Gaps = 8/67 (11%)
Query: 221 CHWKDCGLEFGTQDILVKHINNDHIHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHT 280
C + C F + L HI IH +K F CR C R+ F Q L H+R HT
Sbjct: 7 CPVESCDRRFSQKTNLDTHIR---IHTGQKPFQCRI--CMRN---FSQQASLNAHIRTHT 58
Query: 281 GEKPHKC 287
GEKP C
Sbjct: 59 GEKPFAC 65
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
Query: 225 DCGLEFGTQDILVKHINNDHIHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKP 284
+CG F D L +H H +K + C +C K F + L H R HTGEKP
Sbjct: 26 ECGKSFSRSDHLAEHQR---THTGEKPYKC--PECG---KSFSDKKDLTRHQRTHTGEKP 77
Query: 285 HKCTDL 290
+KC +
Sbjct: 78 YKCPEC 83
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
Query: 225 DCGLEFGTQDILVKHINNDHIHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKP 284
+CG F + L +H H +K + C +C K F + L H R HTGEKP
Sbjct: 54 ECGKSFSDKKDLTRHQR---THTGEKPYKC--PECG---KSFSQRANLRAHQRTHTGEKP 105
Query: 285 HKCTDL 290
+ C +
Sbjct: 106 YACPEC 111
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 225 DCGLEFGTQDILVKHINNDHIHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKP 284
+CG F + L H H +K + C +C K F L H R HTGEKP
Sbjct: 82 ECGKSFSQRANLRAHQR---THTGEKPYAC--PECG---KSFSQLAHLRAHQRTHTGEKP 133
Query: 285 HKCTDL 290
+KC +
Sbjct: 134 YKCPEC 139
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 38/102 (37%), Gaps = 25/102 (24%)
Query: 225 DCGLEFGTQDILVKHINNDHIHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKP 284
+CG F L H H +K + C +C K F + L H R HTGEKP
Sbjct: 110 ECGKSFSQLAHLRAHQR---THTGEKPYKC--PECG---KSFSREDNLHTHQRTHTGEKP 161
Query: 285 HKCTDLEAFDTSSRVAARRIRGWKISRRISDLIPVRNRTRVN 326
+KC + G SRR D + V RT
Sbjct: 162 YKCPEC---------------GKSFSRR--DALNVHQRTHTG 186
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 259 CTRDEKPFKAQYMLVVHMRRHTGEKPHKCTDL 290
C K F L H R HTGEKP+KC +
Sbjct: 24 CPECGKSFSRSDHLAEHQRTHTGEKPYKCPEC 55
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 40/98 (40%), Gaps = 17/98 (17%)
Query: 221 CHWKDCGLEFGTQDILVKHINNDHIHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHT 280
C + C F L +HI IH +K F CR C R+ F L H+R HT
Sbjct: 7 CPVESCDRRFSRSAELTRHIR---IHTGQKPFQCRI--CMRN---FSRSDHLTTHIRTHT 58
Query: 281 GEKPHKCTDLEAFDTSSRVAAR---RIRGWKISRRISD 315
GEKP C D R AR R R KI R D
Sbjct: 59 GEKPFAC------DICGRKFARSDERKRHTKIHLRQKD 90
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 40/98 (40%), Gaps = 17/98 (17%)
Query: 221 CHWKDCGLEFGTQDILVKHINNDHIHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHT 280
C + C F L +HI IH +K F CR C R+ F L H+R HT
Sbjct: 7 CPVESCDRRFSRSADLTRHIR---IHTGQKPFQCRI--CMRN---FSRSDHLTTHIRTHT 58
Query: 281 GEKPHKCTDLEAFDTSSRVAAR---RIRGWKISRRISD 315
GEKP C D R AR R R KI R D
Sbjct: 59 GEKPFAC------DICGRKFARSDERKRHTKIHLRQKD 90
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 258 DCTRDEKPFKAQYMLVVHMRRHTGEKP 284
C+ K F+++ L++HMR HTGEKP
Sbjct: 12 GCSECGKAFRSKSYLIIHMRTHTGEKP 38
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 258 DCTRDEKPFKAQYMLVVHMRRHTGEKPHKCTDL-EAFDTSS 297
C K F +LV H R HTGEKP+KC + +AF +S
Sbjct: 16 GCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNS 56
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Query: 225 DCGLEFGTQDILVKHINNDHIHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKP 284
+CG F L +H +H +K F C +E C K F + L H+R HTG++P
Sbjct: 39 ECGKAFVESSKLKRH---QLVHTGEKPFQCTFEGCG---KRFSLDFNLRTHVRIHTGDRP 92
Query: 285 HKC 287
+ C
Sbjct: 93 YVC 95
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 60/178 (33%), Gaps = 62/178 (34%)
Query: 221 CHWKDCGLEFGTQDILVKHINNDHIHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHT 280
C K C F + KH+ H H R C K F L H HT
Sbjct: 8 CPHKGCTKMFRDNSAMRKHL---HTHGP------RVHVCAECGKAFVESSKLKRHQLVHT 58
Query: 281 GEKPHKCTDLEAFDTSSRVAARRIRGWKISRRISDLIPVRNRTRVNILAVVKRLVMRRIE 340
GEKP +CT E +R S ++
Sbjct: 59 GEKPFQCT-FEG----------------CGKRFS------------------------LD 77
Query: 341 LNIRTELTLMSLNVQFEILSRPKLKPYVCGEENCTKRYTDPSSLRKHIKTVHAPASLN 398
N+RT + + + + +PYVC + C K++ ++L+ HI T HA A N
Sbjct: 78 FNLRTHVRIHTGD-----------RPYVCPFDGCNKKFAQSTNLKSHILT-HAKAKNN 123
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 28/68 (41%), Gaps = 8/68 (11%)
Query: 220 NCHWKDCGLEFGTQDILVKHINNDHIHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRH 279
C +KDC F D L +H H K F C+ C R F L H R H
Sbjct: 38 QCDFKDCERRFSRSDQLKRHQRR---HTGVKPFQCK--TCQRK---FSRSDHLKTHTRTH 89
Query: 280 TGEKPHKC 287
TGEKP C
Sbjct: 90 TGEKPFSC 97
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 59/141 (41%), Gaps = 27/141 (19%)
Query: 247 ANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCTDLEAFDTSSRVAARRIRG 306
+ K+ F+C + C +++ FK + L +H R+HTGEKP++C F R +R +
Sbjct: 2 SEKRPFMCAYPGC--NKRYFKLSH-LQMHSRKHTGEKPYQCD----FKDCERRFSRSDQL 54
Query: 307 WKISRRISDLIPVRNRTRVNILAVVKRLVMRRIELNIRTELTLMSLNVQFEILSRPKLKP 366
+ RR + + P + +T +R R L T KP
Sbjct: 55 KRHQRRHTGVKPFQCKT-------CQRKFSRSDHLKTHTRTHTGE-------------KP 94
Query: 367 YVCGEENCTKRYTDPSSLRKH 387
+ C +C K++ L +H
Sbjct: 95 FSCRWPSCQKKFARSDELVRH 115
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 9/77 (11%)
Query: 225 DCGLEFGTQDILVKHINNDHIHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKP 284
+CG F L KH H +K + C +C K F L H R HTGEKP
Sbjct: 9 ECGKSFSQSSNLQKHQR---THTGEKPYKC--PECG---KSFSQSSDLQKHQRTHTGEKP 60
Query: 285 HKCTDL-EAFDTSSRVA 300
+KC + ++F S ++
Sbjct: 61 YKCPECGKSFSRSDHLS 77
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 259 CTRDEKPFKAQYMLVVHMRRHTGEKPHKCTDL-EAFDTSS 297
C K F L H R HTGEKP+KC + ++F SS
Sbjct: 7 CPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSS 46
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 7/82 (8%)
Query: 220 NCHWKDCGLEFGTQDILVKHINNDHIHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRH 279
C + CG + L H+ H +K + C W+ C F L H R+H
Sbjct: 8 TCDYAGCGKTYTKSSHLKAHLR---THTGEKPYHCDWDGCG---WKFARSDELTRHYRKH 61
Query: 280 TGEKPHKCTDLE-AFDTSSRVA 300
TG +P +C + AF S +A
Sbjct: 62 TGHRPFQCQKCDRAFSRSDHLA 83
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 21/97 (21%)
Query: 184 GGGASW-KPMKIKRETKQHSPESPAGDKYEPGDFVETNCHWKDCGLEFGTQDILVKHINN 242
G G ++ K +K + H+ E P +C W CG +F D L +H
Sbjct: 13 GCGKTYTKSSHLKAHLRTHTGEKPY------------HCDWDGCGWKFARSDELTRHYRK 60
Query: 243 DHIHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRH 279
H + F C+ + ++ F L +HM+RH
Sbjct: 61 ---HTGHRPFQCQ-----KCDRAFSRSDHLALHMKRH 89
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 258 DCTRDEKPFKAQYMLVVHMRRHTGEKP 284
+C+ +K F + L+VH R HTGEKP
Sbjct: 14 ECSECQKAFNTKSNLIVHQRTHTGEKP 40
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 7/82 (8%)
Query: 220 NCHWKDCGLEFGTQDILVKHINNDHIHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRH 279
C + CG + L H+ H +K + C W+ C F L H R+H
Sbjct: 7 TCDYAGCGKTYTKSSHLKAHLR---THTGEKPYHCDWDGCGW---KFARSDELTRHYRKH 60
Query: 280 TGEKPHKCTDLE-AFDTSSRVA 300
TG +P +C + AF S +A
Sbjct: 61 TGHRPFQCQKCDRAFSRSDHLA 82
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 21/97 (21%)
Query: 184 GGGASW-KPMKIKRETKQHSPESPAGDKYEPGDFVETNCHWKDCGLEFGTQDILVKHINN 242
G G ++ K +K + H+ E P +C W CG +F D L +H
Sbjct: 12 GCGKTYTKSSHLKAHLRTHTGEKPY------------HCDWDGCGWKFARSDELTRHYRK 59
Query: 243 DHIHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRH 279
H + F C+ + ++ F L +HM+RH
Sbjct: 60 ---HTGHRPFQCQ-----KCDRAFSRSDHLALHMKRH 88
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 258 DCTRDEKPFKAQYMLVVHMRRHTGEKP 284
C+ K F ++ L++HMR H+GEKP
Sbjct: 14 GCSECGKAFSSKSYLIIHMRTHSGEKP 40
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 221 CHWKDCGLEFGTQDILVKHINNDHIHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHT 280
C + C F + L HI IH +K F CR C R+ F L H+R HT
Sbjct: 7 CPVESCDRRFSQKTNLDTHIR---IHTGQKPFQCRI--CMRN---FSQHTGLNQHIRTHT 58
Query: 281 GEKPHKC 287
GEKP C
Sbjct: 59 GEKPFAC 65
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Query: 248 NKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKC 287
KK FIC++ C R F Y L++H R HT E+P+ C
Sbjct: 14 TKKEFICKF--CGRH---FTKSYNLLIHERTHTDERPYTC 48
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKC 287
H +K + C WE C + F L H R+HTG KP +C
Sbjct: 39 THTGEKPYKCTWEGC---DWRFARSDELTRHYRKHTGAKPFQC 78
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 253 ICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCT 288
C + CT K + L H+R HTGEKP+KCT
Sbjct: 17 YCDYPGCT---KVYTKSSHLKAHLRTHTGEKPYKCT 49
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 264 KPFKAQYMLVVHMRRHTGEKPHKC--TDLEAFDTSS 297
K F + L HMR HTG KP+KC D A D+SS
Sbjct: 16 KCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSS 51
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 30/80 (37%), Gaps = 26/80 (32%)
Query: 226 CGLEFGTQDILVKHINNDHIHANKKSFICRWEDCT--------------RDEKPFKAQYM 271
CG F +D L H+ H K + C+ D DE+PFK Q
Sbjct: 14 CGKCFSRKDKLKTHMR---CHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQIC 70
Query: 272 ---------LVVHMRRHTGE 282
L VH+R HTG+
Sbjct: 71 PYASRNSSQLTVHLRSHTGD 90
>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of The
Free Structure With Those In Nucleic-Acid Complexes
Length = 85
Score = 32.7 bits (73), Expect = 0.48, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 366 PYVCGEENCTKRYTDPSSLRKHIKTVHA 393
PY C E C KR++ PS L++H K VHA
Sbjct: 31 PYECPHEGCDKRFSLPSRLKRHEK-VHA 57
Score = 29.3 bits (64), Expect = 5.2, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 252 FICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKC 287
++C +E+C K FK L VH HT + P++C
Sbjct: 2 YVCHFENCG---KAFKKHNQLKVHQFSHTQQLPYEC 34
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
Rrna 55mer (Nmr Structure)
Length = 87
Score = 32.7 bits (73), Expect = 0.49, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 366 PYVCGEENCTKRYTDPSSLRKHIKTVHA 393
PY C E C KR++ PS L++H K VHA
Sbjct: 31 PYECPHEGCDKRFSLPSRLKRHEK-VHA 57
Score = 29.3 bits (64), Expect = 5.4, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 252 FICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKC 287
++C +E+C K FK L VH HT + P++C
Sbjct: 2 YVCHFENCG---KAFKKHNQLKVHQFSHTQQLPYEC 34
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 362 PKLKPYVCGEENCTKRYTDPSSLRKHIK 389
PK++PY C E+C +R++ L +HI+
Sbjct: 15 PKMRPYACPVESCDRRFSRSDELTRHIR 42
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
724- 756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 258 DCTRDEKPFKAQYMLVVHMRRHTGEKP 284
+C K FK + L+ H R HTGEKP
Sbjct: 14 ECIECGKAFKTKSSLICHRRSHTGEKP 40
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
Query: 223 WKDCGLEFGTQDILVKHINNDHIHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGE 282
K CG F L H+ IH++ + + C++ K F + + H HTGE
Sbjct: 4 CKICGKSFKRSSTLSTHLL---IHSDTRPYPCQYCG-----KRFHQKSDMKKHTFIHTGE 55
Query: 283 KPHKCTDL-EAFDTSSRV 299
KPHKC +AF SS +
Sbjct: 56 KPHKCQVCGKAFSQSSNL 73
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 31.6 bits (70), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 258 DCTRDEKPFKAQYMLVVHMRRHTGEK 283
+CT K F+A+ LV H R HTGEK
Sbjct: 14 ECTHCGKSFRAKGNLVTHQRIHTGEK 39
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 259 CTRDEKPFKAQYMLVVHMRRHTGEKPHKC 287
C K FK ++ LV HM+ HTG KP++C
Sbjct: 40 CGVCGKKFKMKHHLVGHMKIHTGIKPYEC 68
>pdb|2EOI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
329- 359) Of Human Zinc Finger Protein 268
Length = 44
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 255 RWEDCTRDEKPFKAQYMLVVHMRRHTGEKP 284
+ +C+ K F LV+H R HTGE P
Sbjct: 9 KLHECSECRKTFSFHSQLVIHQRIHTGENP 38
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKTVHAPAS 396
KPY+C ++C K ++ P L HIK VH+ S
Sbjct: 64 KPYIC--QSCGKGFSRPDHLNGHIKQVHSGPS 93
>pdb|2EL6|A Chain A, Solution Structure Of The 21th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 259 CTRDEKPFKAQYMLVVHMRRHTGEKP 284
C++ EK F + L+VH R HT EKP
Sbjct: 15 CSQCEKSFSGKLRLLVHQRMHTREKP 40
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 255 RWEDCTRDEKPFKAQYMLVVHMRRHTGEKP 284
R +C+ K F + L++H R HTGEKP
Sbjct: 11 RHYECSECGKAFARKSTLIMHQRIHTGEKP 40
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
551- 583) Of Human Zinc Finger Protein 268
Length = 46
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 258 DCTRDEKPFKAQYMLVVHMRRHTGEKP 284
+C K F +Y L+ H R H GEKP
Sbjct: 14 ECHECGKAFSRKYQLISHQRTHAGEKP 40
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKTVHA 393
KPY+C ++C K ++ P L HIK VH
Sbjct: 11 KPYIC--QSCGKGFSRPDHLNGHIKQVHT 37
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 258 DCTRDEKPFKAQYMLVVHMRRHTGEKP 284
C++ K F + L+VH R HTG KP
Sbjct: 14 GCSQCAKTFSLKSQLIVHQRSHTGVKP 40
>pdb|2LVR|A Chain A, Solution Structure Of Miz-1 Zinc Finger 8
Length = 30
Score = 29.6 bits (65), Expect = 3.5, Method: Composition-based stats.
Identities = 10/26 (38%), Positives = 20/26 (76%), Gaps = 2/26 (7%)
Query: 364 LKPYVCGEENCTKRYTDPSSLRKHIK 389
+KPYVC +C +++ DP +L++H++
Sbjct: 1 MKPYVC--IHCQRQFADPGALQRHVR 24
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 259 CTRDEKPFKAQYMLVVHMRRHTGEK 283
C K F ++ L+VH R HTGEK
Sbjct: 13 CNECGKDFSSKSYLIVHQRIHTGEK 37
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
Query: 251 SFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKC 287
SF+C E CTR F Q L H R HT EKP+ C
Sbjct: 2 SFVC--EVCTR---AFARQEHLKRHYRSHTNEKPYPC 33
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 259 CTRDEKPFKAQYMLVVHMRRHTGEKP 284
C +K F L VH R HTGEKP
Sbjct: 15 CNECKKTFTQSSSLTVHQRIHTGEKP 40
>pdb|3RNZ|A Chain A, Crystal Structure Of Bacillus Amyloliquefaciens
Pyroglutamyl Peptidase I
pdb|3RNZ|B Chain B, Crystal Structure Of Bacillus Amyloliquefaciens
Pyroglutamyl Peptidase I
pdb|3RNZ|C Chain C, Crystal Structure Of Bacillus Amyloliquefaciens
Pyroglutamyl Peptidase I
pdb|3RNZ|D Chain D, Crystal Structure Of Bacillus Amyloliquefaciens
Pyroglutamyl Peptidase I
pdb|3RO0|A Chain A, Crystal Structure Of Bacillus Amyloliquefaciens
Pyroglutamyl Peptidase I And Terpyridine Platinum(Ii)
pdb|3RO0|B Chain B, Crystal Structure Of Bacillus Amyloliquefaciens
Pyroglutamyl Peptidase I And Terpyridine Platinum(Ii)
pdb|3RO0|C Chain C, Crystal Structure Of Bacillus Amyloliquefaciens
Pyroglutamyl Peptidase I And Terpyridine Platinum(Ii)
pdb|3RO0|D Chain D, Crystal Structure Of Bacillus Amyloliquefaciens
Pyroglutamyl Peptidase I And Terpyridine Platinum(Ii)
Length = 223
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 37/90 (41%), Gaps = 11/90 (12%)
Query: 161 DLHSTKLGDKEAKVRAEADTSSMGGGASWKPMKIKRETKQHSPES-PAGDKYEPGDFVET 219
+L+ ++ D E D S G A W + IKR ++ E PA Y G FV
Sbjct: 86 NLNEARIPDNEGNQPVGEDISQGGPAAYWTGLPIKRIVEEIKKEGIPAAVSYTAGTFV-- 143
Query: 220 NCHWKDCGLEFGTQDILVK---HINNDHIH 246
C+ L +G D + + HI IH
Sbjct: 144 -CNH----LFYGLMDEISRHHPHIRGGFIH 168
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 259 CTRDEKPFKAQYMLVVHMRRHTGEKPHKCTDL-EAF 293
C K F L H R HTGEKP+KC + +AF
Sbjct: 21 CDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAF 56
>pdb|2OOX|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-activated Protein Kinase Complexed With Amp
pdb|2OOX|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-activated Protein Kinase Complexed With Amp
pdb|2OOY|G Chain G, Crystal Structure Of The Adenylate Sensor From Amp-
Activated Protein Kinase Complexed With Atp
pdb|2OOY|E Chain E, Crystal Structure Of The Adenylate Sensor From Amp-
Activated Protein Kinase Complexed With Atp
Length = 333
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 28/44 (63%), Gaps = 3/44 (6%)
Query: 319 VRNRTRVNILAVVKRLVMRRIELNIRTELTLMSLNVQFEILSRP 362
+R+RT ++L RL++ + L ++T L+L++LN I+S P
Sbjct: 18 IRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLN---NIVSAP 58
>pdb|2QR1|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp
pdb|2QR1|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp
pdb|2QRC|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Amp
pdb|2QRC|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Amp
pdb|2QRD|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Atp
pdb|2QRD|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Atp
pdb|2QRE|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With
5-Aminoimidazole-4-Carboxamide 1-Beta-D- Ribofuranotide
(Zmp)
pdb|2QRE|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With
5-Aminoimidazole-4-Carboxamide 1-Beta-D- Ribofuranotide
(Zmp)
Length = 334
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 28/44 (63%), Gaps = 3/44 (6%)
Query: 319 VRNRTRVNILAVVKRLVMRRIELNIRTELTLMSLNVQFEILSRP 362
+R+RT ++L RL++ + L ++T L+L++LN I+S P
Sbjct: 19 IRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLN---NIVSAP 59
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Query: 221 CHWKDCGLEFGTQDILVKHINNDHIHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHT 280
C + CG F + L H HIH +KSF C C K F + L HM+ H+
Sbjct: 10 CDFPGCGRIFSNRQYLNHHKKYQHIH--QKSFSCPEPACG---KSFNFKKHLKEHMKLHS 64
Query: 281 GEKPHKC 287
+ + C
Sbjct: 65 DTRDYIC 71
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 259 CTRDEKPFKAQYMLVVHMRRHTGEKP 284
C K F + +L H R HTGEKP
Sbjct: 15 CNECGKTFSQKSILSAHQRTHTGEKP 40
>pdb|1AUG|A Chain A, Crystal Structure Of The Pyroglutamyl Peptidase I From
Bacillus Amyloliquefaciens
pdb|1AUG|B Chain B, Crystal Structure Of The Pyroglutamyl Peptidase I From
Bacillus Amyloliquefaciens
pdb|1AUG|C Chain C, Crystal Structure Of The Pyroglutamyl Peptidase I From
Bacillus Amyloliquefaciens
pdb|1AUG|D Chain D, Crystal Structure Of The Pyroglutamyl Peptidase I From
Bacillus Amyloliquefaciens
Length = 215
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 37/90 (41%), Gaps = 11/90 (12%)
Query: 161 DLHSTKLGDKEAKVRAEADTSSMGGGASWKPMKIKRETKQHSPES-PAGDKYEPGDFVET 219
+L+ ++ D E D S G A W + IKR ++ E PA Y G FV
Sbjct: 86 NLNEARIPDNEGNQPVGEDISQGGPAAYWTGLPIKRIVEEIKKEGIPAAVSYTAGTFV-- 143
Query: 220 NCHWKDCGLEFGTQDILVK---HINNDHIH 246
C+ L +G D + + HI IH
Sbjct: 144 -CNH----LFYGLMDEISRHHPHIRGGFIH 168
>pdb|7ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 28.9 bits (63), Expect = 6.3, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKTVHA 393
K Y C + C KR+ D S+L+ HIKT H+
Sbjct: 1 KTYQC--QYCEKRFADSSNLKTHIKTKHS 27
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 259 CTRDEKPFKAQYMLVVHMRRHTGEKPHKCTDLEA 292
C R + F+ + L H HTGEKP++C A
Sbjct: 20 CDRCQASFRYKGNLASHKTVHTGEKPYRCNICGA 53
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 13/27 (48%)
Query: 258 DCTRDEKPFKAQYMLVVHMRRHTGEKP 284
+C K F L H R HTGEKP
Sbjct: 14 ECAECGKSFSISSQLATHQRIHTGEKP 40
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 259 CTRDEKPFKAQYMLVVHMRRHTGEKP 284
C K F+A+ L +H H+GEKP
Sbjct: 15 CNECGKAFRARSSLAIHQATHSGEKP 40
>pdb|1YXS|A Chain A, Crystal Structure Of Kinase Pim1 With P123m Mutation
Length = 293
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 120 ALHPSMTPHLQQLQAHLLRSGGLLPPQPPFYHPHALSP 157
AL PS P +++Q H LLP + H H+LSP
Sbjct: 244 ALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLHSLSP 281
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 258 DCTRDEKPFKAQYMLVVHMRRHTGE 282
+C +K F + L+VH R HTGE
Sbjct: 14 ECNECQKAFNTKSNLMVHQRTHTGE 38
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
719- 751) Of Human Zinc Finger Protein 268
Length = 46
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 258 DCTRDEKPFKAQYMLVVHMRRHTGEKP 284
+C K F L+VH R HTGE P
Sbjct: 14 ECRECGKSFSFNSQLIVHQRIHTGENP 40
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 258 DCTRDEKPFKAQYMLVVHMRRHTGEKP 284
+CT K F + L +H + HTGEKP
Sbjct: 14 ECTECGKAFTRKSTLSMHQKIHTGEKP 40
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
Query: 250 KSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKC 287
K F CR C R+ F L H+R HTGEKP C
Sbjct: 2 KPFQCRI--CMRN---FSRSDHLTTHIRTHTGEKPFAC 34
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,538,302
Number of Sequences: 62578
Number of extensions: 520563
Number of successful extensions: 1238
Number of sequences better than 100.0: 90
Number of HSP's better than 100.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1059
Number of HSP's gapped (non-prelim): 175
length of query: 486
length of database: 14,973,337
effective HSP length: 103
effective length of query: 383
effective length of database: 8,527,803
effective search space: 3266148549
effective search space used: 3266148549
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)