RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16294
(486 letters)
>gnl|CDD|222150 pfam13465, zf-H2C2_2, Zinc-finger double domain.
Length = 26
Score = 35.8 bits (83), Expect = 0.002
Identities = 12/18 (66%), Positives = 13/18 (72%)
Query: 271 MLVVHMRRHTGEKPHKCT 288
L HMR HTGEKP+KC
Sbjct: 1 NLRRHMRTHTGEKPYKCP 18
>gnl|CDD|227516 COG5189, SFP1, Putative transcriptional repressor regulating G2/M
transition [Transcription / Cell division and chromosome
partitioning].
Length = 423
Score = 33.2 bits (75), Expect = 0.35
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKTVHAPASLNPVPQHKDMQ 407
KPY C E C K+Y + + L+ H+ H L+ P + M
Sbjct: 348 KPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMN 390
Score = 28.9 bits (64), Expect = 7.2
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 363 KLKPYVCGEENCTKRYTDPSSLRKHIKTVH 392
K KPY C E C KRY + + L+ H K H
Sbjct: 395 KDKPYRC--EVCDKRYKNLNGLKYHRKHSH 422
>gnl|CDD|206065 pfam13894, zf-C2H2_4, C2H2-type zinc finger. This family contains
a number of divergent C2H2 type zinc fingers.
Length = 24
Score = 28.4 bits (63), Expect = 0.62
Identities = 6/26 (23%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 367 YVCGEENCTKRYTDPSSLRKHIKTVH 392
+ C C K ++ +L++H++ H
Sbjct: 1 FKC--PLCGKSFSSKDALKRHLRKHH 24
>gnl|CDD|238542 cd01122, GP4d_helicase, GP4d_helicase is a homohexameric 5'-3'
helicases. Helicases couple NTP hydrolysis to the
unwinding of nucleic acid duplexes into their component
strands.
Length = 271
Score = 30.8 bits (70), Expect = 1.5
Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 7/62 (11%)
Query: 272 LVVHMRRHTGEKPHKCTDLEAFDTSSRVAARRIRGWK-----ISRRISDLIPVRNRTRVN 326
LV H+RR G+K H+ + S + I + R + RN T +
Sbjct: 186 LVSHLRRPDGDKTHE--EGGEVSLSDFRGSAAIGQLADNVIALERNQQAELDERNTTYLR 243
Query: 327 IL 328
IL
Sbjct: 244 IL 245
>gnl|CDD|200998 pfam00096, zf-C2H2, Zinc finger, C2H2 type. The C2H2 zinc finger
is the classical zinc finger domain. The two conserved
cysteines and histidines co-ordinate a zinc ion. The
following pattern describes the zinc finger.
#-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can
be any amino acid, and numbers in brackets indicate the
number of residues. The positions marked # are those
that are important for the stable fold of the zinc
finger. The final position can be either his or cys. The
C2H2 zinc finger is composed of two short beta strands
followed by an alpha helix. The amino terminal part of
the helix binds the major groove in DNA binding zinc
fingers. The accepted consensus binding sequence for Sp1
is usually defined by the asymmetric hexanucleotide core
GGGCGG but this sequence does not include, among others,
the GAG (=CTC) repeat that constitutes a high-affinity
site for Sp1 binding to the wt1 promoter.
Length = 22
Score = 27.3 bits (61), Expect = 1.5
Identities = 6/19 (31%), Positives = 14/19 (73%)
Query: 372 ENCTKRYTDPSSLRKHIKT 390
+C K ++ S+L++H++T
Sbjct: 3 PDCGKSFSRKSNLKRHLRT 21
>gnl|CDD|197676 smart00355, ZnF_C2H2, zinc finger.
Length = 23
Score = 27.0 bits (60), Expect = 1.9
Identities = 9/24 (37%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Query: 367 YVCGEENCTKRYTDPSSLRKHIKT 390
Y C C K + S+LR+H++T
Sbjct: 1 YRC--PECGKVFKSKSALREHMRT 22
>gnl|CDD|153277 cd07593, BAR_MUG137_fungi, The Bin/Amphiphysin/Rvs (BAR) domain of
Schizosaccharomyces pombe Meiotically Up-regulated Gene
137 protein and similar proteins. BAR domains are
dimerization, lipid binding and curvature sensing
modules found in many different proteins with diverse
functions including organelle biogenesis, membrane
trafficking or remodeling, and cell division and
migration. This subfamily is composed predominantly of
uncharacterized fungal proteins with similarity to
Schizosaccharomyces pombe Meiotically Up-regulated Gene
137 protein (MUG137), which may play a role in meiosis
and sporulation in fission yeast. MUG137 contains an
N-terminal BAR domain and a C-terminal SH3 domain,
similar to endophilins. Endophilins play roles in
synaptic vesicle formation, virus budding, mitochondrial
morphology maintenance, receptor-mediated endocytosis
inhibition, and endosomal sorting. BAR domains form
dimers that bind to membranes, induce membrane bending
and curvature, and may also be involved in
protein-protein interactions.
Length = 215
Score = 30.0 bits (68), Expect = 2.1
Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 8/50 (16%)
Query: 403 HKDMQDIQSNEVTQSNMRQSTYQRTLEYVEQC--------QNWVSSSTQP 444
M I+ +E Q L+Y +Q Q+W S S+
Sbjct: 166 EARMVAIKESEADQYRDLTDLLDAELDYHQQSLDVLREVRQSWPSKSSGS 215
>gnl|CDD|219055 pfam06484, Ten_N, Teneurin Intracellular Region. This family is
found in the intracellular N-terminal region of the
Teneurin family of proteins. These proteins are
'pair-rule' genes and are involved in tissue patterning,
specifically probably neural patterning. The
intracellular domain is cleaved in response to
homophilic interaction of the extracellular domain, and
translocates to the nucleus. Here it probably carries
out to some transcriptional regulatory activity. The
length of this region and the conservation suggests that
there may be two structural domains here (personal obs:C
Yeats).
Length = 370
Score = 30.4 bits (68), Expect = 2.2
Identities = 31/158 (19%), Positives = 50/158 (31%), Gaps = 33/158 (20%)
Query: 9 KDNESLGLT-SEYLGSRGLSDLPP-PPTATSSIGSAEFPFPLDGSRLLASPRSHLKQNRK 66
+ N +L LT +E+ + + PP ++ SS + P P P S +
Sbjct: 138 RANSNLTLTDTEHENTENDDNGPPLHCSSASSSPVEQLPSP---------PPSPAANECQ 188
Query: 67 RALSASPYSDSIADIHTMIRFSPNSLVNSLVNSTASSRSGGSYGHLSAGALSPALHPSMT 126
L S + + D + F PNS + + SG A A
Sbjct: 189 GRLLGSSAAQAAQDSDSEDEFGPNSFL-------VKTGSGNLATPAQASASPGNFQNHSR 241
Query: 127 PHLQQLQAHLLRSGGLLPPQPPFYHPHALSPLNSDLHS 164
L P P H H+ S + ++S
Sbjct: 242 ---------------LRTPPLPLSHSHSPSHHAASINS 264
>gnl|CDD|219584 pfam07800, DUF1644, Protein of unknown function (DUF1644). This
family consists of sequences found in a number of
hypothetical plant proteins of unknown function. The
region of interest contains nine highly conserved
cysteine residues and is approximately 160 amino acids
in length, and is probably a zinc-binding domain.
Length = 148
Score = 28.9 bits (65), Expect = 3.4
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKTVHA---PASLNPVPQHK 404
K C +E C+ T LRKH ++ H P ++P Q +
Sbjct: 92 KKRSCMQEGCSFSGT-YRELRKHARSEHPGARPREVDPARQRR 133
>gnl|CDD|178267 PLN02661, PLN02661, Putative thiazole synthesis.
Length = 357
Score = 28.6 bits (64), Expect = 8.1
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 47 PLDGSRLLASPRSHLKQNRKRALSASPYSDSIADIHTMIRFSP--NSLVN 94
G RL+ S R+ L A S+S S + D++ +F+P S+V+
Sbjct: 28 SFAGVRLVTSVRAPLADASAPARSSSSSSTAPYDLNN-FKFAPIKESIVS 76
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.130 0.385
Gapped
Lambda K H
0.267 0.0655 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 23,968,099
Number of extensions: 2235113
Number of successful extensions: 1824
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1822
Number of HSP's successfully gapped: 23
Length of query: 486
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 385
Effective length of database: 6,457,848
Effective search space: 2486271480
Effective search space used: 2486271480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (27.4 bits)