RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16294
(486 letters)
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 113 bits (286), Expect = 4e-30
Identities = 46/83 (55%), Positives = 58/83 (69%), Gaps = 3/83 (3%)
Query: 218 ETNCHWKDCGLEFGTQDILVKHINNDHIHANKKSFICRWEDCTRDEKPFKAQYMLVVHMR 277
ET+C W C EF +Q+ LV HIN++HIH +K F+C W C+R+ +PFKAQYMLVVHMR
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR 60
Query: 278 RHTGEKPHKCTDLE---AFDTSS 297
RHTGEKPHKCT ++
Sbjct: 61 RHTGEKPHKCTFEGCRKSYSRLE 83
Score = 51.8 bits (125), Expect = 4e-08
Identities = 26/111 (23%), Positives = 37/111 (33%), Gaps = 37/111 (33%)
Query: 221 CHWKDCGLE---FGTQDILVKHINNDHIHANKKSFICRWEDCTRD--------------- 262
CHW C E F Q +LV H+ H +K C +E C +
Sbjct: 37 CHWGGCSRELRPFKAQYMLVVHM---RRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHT 93
Query: 263 -EKPFKAQYM-----------LVVHMRR-HTGEKPHKCTDLE---AFDTSS 297
EKP+ ++ H R H+ EKP+ C + S
Sbjct: 94 GEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPS 144
Score = 51.1 bits (123), Expect = 6e-08
Identities = 23/28 (82%), Positives = 24/28 (85%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKTVH 392
KPYVC CTKRYTDPSSLRKH+KTVH
Sbjct: 127 KPYVCKLPGCTKRYTDPSSLRKHVKTVH 154
Score = 41.8 bits (99), Expect = 1e-04
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKTVH 392
KPY+C E C+K +++ S KH H
Sbjct: 96 KPYMCEHEGCSKAFSNASDRAKHQNRTH 123
Score = 38.0 bits (89), Expect = 0.002
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
Query: 221 CHWKDCGLEFGTQDILVKHINNDHIHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHT 280
C + C F KH N H+N+K ++C+ CT K + L H++
Sbjct: 100 CEHEGCSKAFSNASDRAKHQN--RTHSNEKPYVCKLPGCT---KRYTDPSSLRKHVKTVH 154
Query: 281 G 281
G
Sbjct: 155 G 155
Score = 35.3 bits (82), Expect = 0.014
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKT 390
KP+ C E C K Y+ +L+ H+++
Sbjct: 66 KPHKCTFEGCRKSYSRLENLKTHLRS 91
Score = 33.3 bits (77), Expect = 0.079
Identities = 5/28 (17%), Positives = 10/28 (35%), Gaps = 2/28 (7%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKTVH 392
+ C++ + L HI + H
Sbjct: 2 TDCRW--DGCSQEFDSQEQLVHHINSEH 27
Score = 29.9 bits (68), Expect = 0.89
Identities = 6/29 (20%), Positives = 12/29 (41%), Gaps = 3/29 (10%)
Query: 365 KPYVCGEENCT---KRYTDPSSLRKHIKT 390
K +VC C+ + + L H++
Sbjct: 33 KEFVCHWGGCSRELRPFKAQYMLVVHMRR 61
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 108 bits (271), Expect = 6e-29
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 215 DFVETNCHWKDCGLEFGTQDILVKHINNDHI-HANKKSFICRWEDCTRDEKPFKAQYMLV 273
D + + K C F T LV H+ +H+ + + +C WE+C R+ K FKA+Y LV
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLV 79
Query: 274 VHMRRHTGEKPHKCT 288
H+R HTGEK +
Sbjct: 80 NHIRVHTGEKSGPSS 94
Score = 33.4 bits (76), Expect = 0.028
Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 8/47 (17%)
Query: 249 KKSFICRWEDCTRDE-------KPFKAQYMLVVHMRR-HTGEKPHKC 287
K+ C+W D + + F + LV H+ H G
Sbjct: 11 KQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNN 57
Score = 30.3 bits (68), Expect = 0.29
Identities = 4/28 (14%), Positives = 11/28 (39%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKTVH 392
+++C + ++ L H+ H
Sbjct: 22 AQLSRPKKSCDRTFSTMHELVTHVTMEH 49
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 100 bits (252), Expect = 2e-25
Identities = 34/94 (36%), Positives = 45/94 (47%), Gaps = 14/94 (14%)
Query: 218 ETNCHW----------KDCGLEFGTQDILVKHINNDHIHA-NKKSFICRWEDCTRDEKPF 266
E +C W K C F T LV H+ +H+ + + +C WE+C R+ K F
Sbjct: 13 ELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSF 72
Query: 267 KAQYMLVVHMRRHTGEKPHKCTDLE---AFDTSS 297
KA+Y LV H+R HTGEKP C F S
Sbjct: 73 KAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSE 106
Score = 53.4 bits (129), Expect = 8e-09
Identities = 18/68 (26%), Positives = 26/68 (38%), Gaps = 6/68 (8%)
Query: 221 CHWKDCGLEFGTQDILVKHINNDHIHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHT 280
C + CG F + L H H +K F C +E C ++ F HM HT
Sbjct: 93 CPFPGCGKIFARSENLKIHK---RTHTGEKPFKCEFEGC---DRRFANSSDRKKHMHVHT 146
Query: 281 GEKPHKCT 288
+K +
Sbjct: 147 SDKSGPSS 154
Score = 38.4 bits (90), Expect = 0.001
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKT 390
KP+ C E C +R+ + S +KH+
Sbjct: 119 KPFKCEFEGCDRRFANSSDRKKHMHV 144
Score = 33.8 bits (78), Expect = 0.054
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKT 390
KP+ C C K + +L+ H +T
Sbjct: 89 KPFPCPFPGCGKIFARSENLKIHKRT 114
Score = 29.9 bits (68), Expect = 0.95
Identities = 4/28 (14%), Positives = 8/28 (28%), Gaps = 2/28 (7%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKTVH 392
C + ++ L H+ H
Sbjct: 24 LSRPKKS--CDRTFSTMHELVTHVTMEH 49
>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2
zinc fingers, beta-BETA-alpha, solution structure; NMR
{Saccharomyces cerevisiae}
Length = 64
Score = 59.3 bits (143), Expect = 1e-11
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
Query: 218 ETNCHWKDCGLEFGTQDILVKHINNDHI----HANKKSFICRWEDCTR 261
+ C WK+C + L +H+ DH+ + C WEDC
Sbjct: 1 DLKCKWKECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDF 48
Score = 35.4 bits (81), Expect = 0.002
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 220 NCHWKDCGLEFGTQDILVKHINNDH 244
C+W+DC +V HIN H
Sbjct: 40 ACNWEDCDFLGDDTASIVNHINAQH 64
Score = 28.9 bits (64), Expect = 0.61
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 360 SRPKLKPYVCGEENCTKRYTDPSSLRKHIKTVH 392
+ ++P C E+C D +S+ HI H
Sbjct: 32 FKHPMEPLACNWEDCDFLGDDTASIVNHINAQH 64
Score = 27.3 bits (60), Expect = 1.9
Identities = 5/28 (17%), Positives = 11/28 (39%)
Query: 367 YVCGEENCTKRYTDPSSLRKHIKTVHAP 394
C + C + + L++H+ H
Sbjct: 2 LKCKWKECPESASSLFDLQRHLLKDHVS 29
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 56.9 bits (138), Expect = 1e-10
Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 6/67 (8%)
Query: 221 CHWKDCGLEFGTQDILVKHINNDHIHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHT 280
CH+++CG F + L H H + + C E C +K F L H + H
Sbjct: 4 CHFENCGKAFKKHNQLKVHQ---FSHTQQLPYECPHEGC---DKRFSLPSRLKRHEKVHA 57
Query: 281 GEKPHKC 287
G K
Sbjct: 58 GYPCKKD 64
Score = 49.2 bits (118), Expect = 6e-08
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
Query: 252 FICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCTDLE---AFDTSSR 298
++C +E+C K FK L VH HT + P++C F SR
Sbjct: 2 YVCHFENCG---KAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSR 48
Score = 40.3 bits (95), Expect = 8e-05
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKT 390
PY C E C KR++ PS L++H K
Sbjct: 30 LPYECPHEGCDKRFSLPSRLKRHEKV 55
Score = 31.4 bits (72), Expect = 0.096
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 367 YVCGEENCTKRYTDPSSLRKHIKT 390
YVC ENC K + + L+ H +
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFS 25
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 55.2 bits (134), Expect = 5e-10
Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 6/69 (8%)
Query: 221 CHWKDCGLEFGTQDILVKHINNDHIHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHT 280
C + CG + L H+ H +K + C W+ C F L H R+HT
Sbjct: 8 CDYAGCGKTYTKSSHLKAHL---RTHTGEKPYHCDWDGCG---WKFARSDELTRHYRKHT 61
Query: 281 GEKPHKCTD 289
G +P +C
Sbjct: 62 GHRPFQCQK 70
Score = 44.4 bits (106), Expect = 3e-06
Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 6/52 (11%)
Query: 249 KKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCTDLE---AFDTSS 297
+ C + C K + L H+R HTGEKP+ C F S
Sbjct: 3 TATHTCDYAGC---GKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSD 51
Score = 33.7 bits (78), Expect = 0.017
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKT 390
KPY C + C ++ L +H +
Sbjct: 34 KPYHCDWDGCGWKFARSDELTRHYRK 59
Score = 29.8 bits (68), Expect = 0.46
Identities = 6/26 (23%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKT 390
+P+ C + C + ++ L H+K
Sbjct: 64 RPFQCQK--CDRAFSRSDHLALHMKR 87
Score = 29.4 bits (67), Expect = 0.56
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 2/30 (6%)
Query: 361 RPKLKPYVCGEENCTKRYTDPSSLRKHIKT 390
R C K YT S L+ H++T
Sbjct: 2 RTATHTCDY--AGCGKTYTKSSHLKAHLRT 29
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 54.5 bits (132), Expect = 6e-10
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
Query: 221 CHWKDCGLEFGTQDILVKHINNDHIHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHT 280
C + CG F + L H HIH +KSF C C K F + L HM+ H+
Sbjct: 10 CDFPGCGRIFSNRQYLNHHKKYQHIH--QKSFSCPEPAC---GKSFNFKKHLKEHMKLHS 64
Query: 281 GEKPHKCT 288
+ + C
Sbjct: 65 DTRDYICE 72
Score = 37.1 bits (87), Expect = 0.001
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKT 390
K + C E C K + L++H+K
Sbjct: 37 KSFSCPEPACGKSFNFKKHLKEHMKL 62
Score = 36.4 bits (85), Expect = 0.001
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKTVH 392
C C + +++ L H K H
Sbjct: 6 SGMPCDFPGCGRIFSNRQYLNHHKKYQH 33
Score = 32.1 bits (74), Expect = 0.047
Identities = 3/22 (13%), Positives = 4/22 (18%), Gaps = 3/22 (13%)
Query: 279 HTGEKPHKCTDLE---AFDTSS 297
+G C F
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQ 23
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 56.0 bits (136), Expect = 7e-10
Identities = 23/80 (28%), Positives = 29/80 (36%), Gaps = 12/80 (15%)
Query: 221 CHWKDCGLEFGTQDILVKHINNDHIHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHT 280
C K C F + KH+ H H + +C +C K F L H HT
Sbjct: 8 CPHKGCTKMFRDNSAMRKHL---HTHG-PRVHVC--AEC---GKAFVESSKLKRHQLVHT 58
Query: 281 GEKPHKCTDLE---AFDTSS 297
GEKP +CT F
Sbjct: 59 GEKPFQCTFEGCGKRFSLDF 78
Score = 53.7 bits (130), Expect = 4e-09
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 9/77 (11%)
Query: 224 KDCGLEFGTQDILVKHINNDHIHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEK 283
+CG F L +H +H +K F C +E C K F + L H+R HTG++
Sbjct: 38 AECGKAFVESSKLKRHQ---LVHTGEKPFQCTFEGC---GKRFSLDFNLRTHVRIHTGDR 91
Query: 284 PHKCTDLE---AFDTSS 297
P+ C F S+
Sbjct: 92 PYVCPFDGCNKKFAQST 108
Score = 50.2 bits (121), Expect = 6e-08
Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 6/66 (9%)
Query: 221 CHWKDCGLEFGTQDILVKHINNDHIHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHT 280
C ++ CG F L H+ IH + ++C ++ C K F L H+ H
Sbjct: 65 CTFEGCGKRFSLDFNLRTHV---RIHTGDRPYVCPFDGC---NKKFAQSTNLKSHILTHA 118
Query: 281 GEKPHK 286
K ++
Sbjct: 119 KAKNNQ 124
Score = 36.0 bits (84), Expect = 0.007
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKT 390
+ C + CTK + D S++RKH+ T
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKHLHT 29
Score = 35.6 bits (83), Expect = 0.007
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKT 390
+PYVC + C K++ ++L+ HI T
Sbjct: 91 RPYVCPFDGCNKKFAQSTNLKSHILT 116
Score = 34.4 bits (80), Expect = 0.017
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKT 390
KP+ C E C KR++ +LR H++
Sbjct: 61 KPFQCTFEGCGKRFSLDFNLRTHVRI 86
Score = 30.6 bits (70), Expect = 0.39
Identities = 8/26 (30%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKT 390
+ +VC E C K + + S L++H
Sbjct: 33 RVHVCAE--CGKAFVESSKLKRHQLV 56
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 55.6 bits (135), Expect = 7e-10
Identities = 26/80 (32%), Positives = 31/80 (38%), Gaps = 11/80 (13%)
Query: 221 CHWKDCGLEFGTQDILVKHINNDHIHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHT 280
C +KDC F D L +H H K F C + C ++ F L H R HT
Sbjct: 39 CDFKDCERRFSRSDQLKRHQ---RRHTGVKPFQC--KTC---QRKFSRSDHLKTHTRTHT 90
Query: 281 GEKPHKCTDLE---AFDTSS 297
GEKP C F S
Sbjct: 91 GEKPFSCRWPSCQKKFARSD 110
Score = 47.1 bits (113), Expect = 7e-07
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Query: 250 KSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCTDLE---AFDTSS 297
+ F+C + C K + L +H R+HTGEKP++C + F S
Sbjct: 5 RPFMCAYPGC---NKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSD 52
Score = 37.9 bits (89), Expect = 0.001
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKT 390
+P++C C KRY S L+ H +
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHSRK 30
Score = 34.0 bits (79), Expect = 0.021
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKT 390
KP+ C +C K++ L +H
Sbjct: 93 KPFSCRWPSCQKKFARSDELVRHHNM 118
Score = 34.0 bits (79), Expect = 0.026
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKT 390
KPY C ++C +R++ L++H +
Sbjct: 35 KPYQCDFKDCERRFSRSDQLKRHQRR 60
Score = 32.1 bits (74), Expect = 0.13
Identities = 19/56 (33%), Positives = 22/56 (39%), Gaps = 6/56 (10%)
Query: 224 KDCGLEFGTQDILVKHINNDHIHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRH 279
K C +F D L H H +K F CRW C +K F LV H H
Sbjct: 70 KTCQRKFSRSDHLKTHT---RTHTGEKPFSCRWPSC---QKKFARSDELVRHHNMH 119
Score = 29.8 bits (68), Expect = 0.69
Identities = 7/26 (26%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKT 390
KP+ C C ++++ L+ H +T
Sbjct: 65 KPFQCKT--CQRKFSRSDHLKTHTRT 88
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 54.6 bits (132), Expect = 9e-10
Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 6/69 (8%)
Query: 221 CHWKDCGLEFGTQDILVKHINNDHIHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHT 280
C + C + L H+ H +K + C WE C + F L H R+HT
Sbjct: 18 CDYPGCTKVYTKSSHLKAHL---RTHTGEKPYKCTWEGC---DWRFARSDELTRHYRKHT 71
Query: 281 GEKPHKCTD 289
G KP +C
Sbjct: 72 GAKPFQCGV 80
Score = 44.2 bits (105), Expect = 5e-06
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 241 NNDHIHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCTDLE 291
++ ++ C + C K + L H+R HTGEKP+KCT
Sbjct: 5 SSGPDLEKRRIHYCDYPGC---TKVYTKSSHLKAHLRTHTGEKPYKCTWEG 52
Score = 34.9 bits (81), Expect = 0.010
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKT 390
KPY C E C R+ L +H +
Sbjct: 44 KPYKCTWEGCDWRFARSDELTRHYRK 69
Score = 33.4 bits (77), Expect = 0.034
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 361 RPKLKPYVCGEENCTKRYTDPSSLRKHIKT 390
K + + C CTK YT S L+ H++T
Sbjct: 10 LEKRRIHYCDYPGCTKVYTKSSHLKAHLRT 39
Score = 31.8 bits (73), Expect = 0.12
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKT 390
KP+ CG C + ++ L H+K
Sbjct: 74 KPFQCGV--CNRSFSRSDHLALHMKR 97
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 56.4 bits (137), Expect = 2e-09
Identities = 25/80 (31%), Positives = 33/80 (41%), Gaps = 9/80 (11%)
Query: 221 CHWKDCGLEFGTQDILVKHINNDHIHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHT 280
C + DCG + L H+ H +K F C+ E C EK F + + L H HT
Sbjct: 15 CSFADCGAAYNKNWKLQAHLC---KHTGEKPFPCKEEGC---EKGFTSLHHLTRHSLTHT 68
Query: 281 GEKPHKCTDLE---AFDTSS 297
GEK C F T +
Sbjct: 69 GEKNFTCDSDGCDLRFTTKA 88
Score = 55.3 bits (134), Expect = 4e-09
Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 11/83 (13%)
Query: 221 CHWKDCGLEFGTQDILVKHINNDHIHANKKS--FICRWEDCTRDEKPFKAQYMLVVHMRR 278
C C L F T+ + KH N N K ++C +E+C K FK L VH
Sbjct: 75 CDSDGCDLRFTTKANMKKHFN---RFHNIKICVYVCHFENC---GKAFKKHNQLKVHQFS 128
Query: 279 HTGEKPHKCTDLE---AFDTSSR 298
HT + P++C F SR
Sbjct: 129 HTQQLPYECPHEGCDKRFSLPSR 151
Score = 51.4 bits (124), Expect = 8e-08
Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 6/67 (8%)
Query: 221 CHWKDCGLEFGTQDILVKHINNDHIHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHT 280
CH+++CG F + L H H + + C E C +K F L H + H
Sbjct: 107 CHFENCGKAFKKHNQLKVHQF---SHTQQLPYECPHEGC---DKRFSLPSRLKRHEKVHA 160
Query: 281 GEKPHKC 287
G K
Sbjct: 161 GYPCKKD 167
Score = 51.1 bits (123), Expect = 1e-07
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 6/56 (10%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCTDLE---AFDTSS 297
+ K +IC + DC + + L H+ +HTGEKP C + F +
Sbjct: 6 LPVVYKRYICSFADC---GAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLH 58
Score = 38.7 bits (91), Expect = 0.002
Identities = 3/26 (11%), Positives = 9/26 (34%), Gaps = 3/26 (11%)
Query: 275 HMRRHTGEKPHKCTDLE---AFDTSS 297
K + C+ + A++ +
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNW 28
Score = 37.6 bits (88), Expect = 0.004
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKT 390
PY C E C KR++ PS L++H K
Sbjct: 133 LPYECPHEGCDKRFSLPSRLKRHEKV 158
Score = 36.8 bits (86), Expect = 0.007
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKT 390
K + C + C R+T ++++KH
Sbjct: 71 KNFTCDSDGCDLRFTTKANMKKHFNR 96
Score = 34.1 bits (79), Expect = 0.052
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKT 390
KP+ C EE C K +T L +H T
Sbjct: 41 KPFPCKEEGCEKGFTSLHHLTRHSLT 66
Score = 33.0 bits (76), Expect = 0.14
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 363 KLKPYVCGEENCTKRYTDPSSLRKHIKT 390
K+ YVC ENC K + + L+ H +
Sbjct: 101 KICVYVCHFENCGKAFKKHNQLKVHQFS 128
Score = 32.2 bits (74), Expect = 0.22
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKT 390
K Y+C +C Y L+ H+
Sbjct: 11 KRYICSFADCGAAYNKNWKLQAHLCK 36
Score = 28.7 bits (65), Expect = 3.2
Identities = 6/28 (21%), Positives = 9/28 (32%), Gaps = 5/28 (17%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKTVH 392
K C K + + KH+ H
Sbjct: 166 KDDSCSF--VGKTW---TLYLKHVAECH 188
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 59.7 bits (144), Expect = 2e-09
Identities = 63/341 (18%), Positives = 105/341 (30%), Gaps = 125/341 (36%)
Query: 26 LSDLPPPPTATSSIGSAEFPFPLDGSRLLASPRSHLKQNRKRALSASPYS------DSIA 79
LS+L + F L+ L +P + ++ L + P S +A
Sbjct: 195 LSELIRTTLDAEKV----FTQGLNILEWLENPSNTPDKD---YLLSIPISCPLIGVIQLA 247
Query: 80 DIHTMIR---FSPNSLVNSLVNST------------ASSRSGGSYGHLSAGALS------ 118
+ F+P L + L +T A + S S+ A++
Sbjct: 248 HYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIG 307
Query: 119 -------P--ALHPSM------------TPHL-------QQLQAHLLRSGGLLPPQPPFY 150
P +L PS+ +P L +Q+Q ++ ++ LP
Sbjct: 308 VRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVE 367
Query: 151 --------------HPHALSPLNSDLHSTKLGDKEAKVRAEADTSSMGGGASWKPMKIKR 196
P +L LN L +AK + D S P +R
Sbjct: 368 ISLVNGAKNLVVSGPPQSLYGLNLTLR-------KAKAPSGLDQSR-------IPFS-ER 412
Query: 197 ETKQ-----------HSPE-SPAGDKYEPGDFVETNCHWKDCGLE---FGTQD-----IL 236
+ K HS PA D D V+ N + ++ + T D +L
Sbjct: 413 KLKFSNRFLPVASPFHSHLLVPASDLIN-KDLVKNNVSFNAKDIQIPVYDTFDGSDLRVL 471
Query: 237 VKHINNDHIHANKKSFICR----WEDCTRDEKPFKAQYMLV 273
I+ + I R WE T+ FKA ++L
Sbjct: 472 SGSISERIVDC-----IIRLPVKWETTTQ----FKATHILD 503
Score = 43.9 bits (103), Expect = 1e-04
Identities = 26/176 (14%), Positives = 46/176 (26%), Gaps = 71/176 (40%)
Query: 5 EEGVKDNE------SLGLTSEYLGSRGLSDLPPPPTATSSIGSAEFPFPLDGSRLLASPR 58
+G+ + SLG EY A +S+ ++
Sbjct: 1749 SKGLIPADATFAGHSLG---EY-------------AALASLADV-MSIE-SLVEVV---- 1786
Query: 59 SHLKQNRKRAL---SASPYSDSIADIHTMIRFSPNSLVNSL-------VNSTASSRSGGS 108
R + A P + + MI +P + S V R+G
Sbjct: 1787 ------FYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWL 1840
Query: 109 -----Y----------GHLSA-GALSPAL-----------HPSMTPHLQQLQAHLL 137
Y G L A ++ L + L++++ HL
Sbjct: 1841 VEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHLF 1896
Score = 40.8 bits (95), Expect = 0.001
Identities = 91/585 (15%), Positives = 162/585 (27%), Gaps = 219/585 (37%)
Query: 2 EDGEEGVKDNE---SLGLTSEYLGSRGLSDLPPPPTATSSIGSAEFPFPLDGSRLLASP- 57
E E D+E L ++LG +S L P S +G + ++L
Sbjct: 43 EPTEGFAADDEPTTPAELVGKFLGY--VSSLVEP----SKVGQFD--------QVLNLCL 88
Query: 58 ----RSHLKQNRKRALSASPYSDSIADIHTMIRFSPNSLVNSLVNSTASSRSGGSYGHLS 113
+L+ N DIH + +LV + + +Y ++
Sbjct: 89 TEFENCYLEGN---------------DIHALAAKLLQENDTTLVKTKELIK---NY--IT 128
Query: 114 AGALSPALHPSMTPHLQQLQAHLLRS------------GGLLPPQ----PPF-------- 149
A ++ P + L R+ GG Q F
Sbjct: 129 ARIMAK--RPFDKKS----NSALFRAVGEGNAQLVAIFGG----QGNTDDYFEELRDLYQ 178
Query: 150 -YHPHALSPLNSDLHSTKLGDKEAKVRAEADTSSM-GGG---ASWKPMKIKRETKQHSPE 204
YH + L + L +R D + G W +P
Sbjct: 179 TYHVL-VGDL-IKFSAETL---SELIRTTLDAEKVFTQGLNILEW----------LENPS 223
Query: 205 SPAGDKY-------EPGDFVETNCHW----KDCGLEFG------------TQDILVKHIN 241
+ Y P V H+ K G G +Q ++
Sbjct: 224 NTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVA- 282
Query: 242 NDHIHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCTDLEAFDTSSRVAA 301
I A S WE F + + G + + EA+ +S +
Sbjct: 283 ---I-AETDS----WES-------FFVSVRKAITVLFFIGVRCY-----EAYPNTSLPPS 322
Query: 302 RRIRGWKISRRISDLIP-----VRNRTRVNILAVVKRL-----VMRRIEL---NIRTEL- 347
+ S ++ +P + N T+ + V + +++E+ N L
Sbjct: 323 IL----EDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLV 378
Query: 348 ------TLMSLNVQFEILSRPKLKPYVCGEENCTKRYTDPSSLRKHIKTVH------AP- 394
+L LN+ K K + ++ P S RK +K + +P
Sbjct: 379 VSGPPQSLYGLNLTLR-----KAK--APSGLDQSRI---PFSERK-LKFSNRFLPVASPF 427
Query: 395 --ASLNPVPQHKDMQDIQSNEV---------------TQSNMRQSTYQRTLEYVEQ-CQ- 435
L P +D+ N V S++R + + V+ +
Sbjct: 428 HSHLLVPA-SDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRL 486
Query: 436 --NWVSSSTQPAPA----GPPSAATGNMVINDRNTSLSSLLEENR 474
W +++ A GP G + L L N+
Sbjct: 487 PVKWETTTQFKATHILDFGP-----GGA------SGLGVLTHRNK 520
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 52.9 bits (128), Expect = 7e-09
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 224 KDCGLEFGTQDILVKHINNDHIHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEK 283
CG + ++ L++H + ++ +++ F C C ++ F+ + L +HM HTGE
Sbjct: 39 PKCGKCYFRKENLLEHEARNCMNRSEQVFTC--SVC---QETFRRRMELRLHMVSHTGEM 93
Query: 284 PHKCTD 289
P+KC+
Sbjct: 94 PYKCSS 99
Score = 42.5 bits (101), Expect = 3e-05
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 259 CTRDEKPFKAQYMLVVHMRRHTGEKPHKCTD 289
C K F ++Y L VH R+HTGEKP +C
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPK 40
Score = 32.9 bits (76), Expect = 0.067
Identities = 13/61 (21%), Positives = 20/61 (32%), Gaps = 9/61 (14%)
Query: 224 KDCGLEFGTQDILVKHINNDHIHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRR-HTGE 282
C F + L H H + + C C + F + L HM + H+G
Sbjct: 70 SVCQETFRRRMELRLH---MVSHTGEMPYKC--SSC---SQQFMQKKDLQSHMIKLHSGP 121
Query: 283 K 283
Sbjct: 122 S 122
Score = 29.0 bits (66), Expect = 1.4
Identities = 7/28 (25%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKTVH 392
PY C C++++ L+ H+ +H
Sbjct: 93 MPYKCSS--CSQQFMQKKDLQSHMIKLH 118
Score = 29.0 bits (66), Expect = 1.5
Identities = 2/11 (18%), Positives = 4/11 (36%)
Query: 279 HTGEKPHKCTD 289
+G +C
Sbjct: 2 SSGSSGVECPT 12
Score = 27.9 bits (63), Expect = 3.1
Identities = 8/23 (34%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKH 387
KP+ C + C K Y +L +H
Sbjct: 34 KPFECPK--CGKCYFRKENLLEH 54
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 51.7 bits (125), Expect = 8e-09
Identities = 23/69 (33%), Positives = 28/69 (40%), Gaps = 8/69 (11%)
Query: 221 CHWKDCGLEFGTQDILVKHINNDHIHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHT 280
C + C F L +HI IH +K F C C + F L H+R HT
Sbjct: 7 CPVESCDRRFSQSGSLTRHI---RIHTGQKPFQC--RIC---MRNFSRSDHLTTHIRTHT 58
Query: 281 GEKPHKCTD 289
GEKP C
Sbjct: 59 GEKPFACDI 67
Score = 45.9 bits (110), Expect = 8e-07
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 250 KSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCT 288
+ + C E C ++ F L H+R HTG+KP +C
Sbjct: 3 RPYACPVESC---DRRFSQSGSLTRHIRIHTGQKPFQCR 38
Score = 35.1 bits (82), Expect = 0.006
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKT 390
+PY C E+C +R++ SL +HI+
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRI 28
Score = 30.1 bits (69), Expect = 0.31
Identities = 6/26 (23%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKT 390
KP+ C C +++ ++H K
Sbjct: 61 KPFACDI--CGRKFARSDERKRHTKI 84
Score = 29.7 bits (68), Expect = 0.49
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKT 390
KP+ C C + ++ L HI+T
Sbjct: 33 KPFQCRI--CMRNFSRSDHLTTHIRT 56
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 48.9 bits (117), Expect = 4e-08
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 246 HANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCT 288
+ +S IC C K + L H R HTGEKP C+
Sbjct: 12 SSRIRSHICSHPGCG---KTYFKSSHLKAHTRTHTGEKPFSCS 51
Score = 37.8 bits (88), Expect = 5e-04
Identities = 17/59 (28%), Positives = 21/59 (35%), Gaps = 6/59 (10%)
Query: 221 CHWKDCGLEFGTQDILVKHINNDHIHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRH 279
C CG + L H H +K F C W+ C E+ F L H R H
Sbjct: 20 CSHPGCGKTYFKSSHLKAHT---RTHTGEKPFSCSWKGC---ERRFARSDELSRHRRTH 72
Score = 35.1 bits (81), Expect = 0.004
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 362 PKLKPYVCGEENCTKRYTDPSSLRKHIKT 390
+++ ++C C K Y S L+ H +T
Sbjct: 13 SRIRSHICSHPGCGKTYFKSSHLKAHTRT 41
Score = 33.5 bits (77), Expect = 0.016
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKT 390
KP+ C + C +R+ L +H +T
Sbjct: 46 KPFSCSWKGCERRFARSDELSRHRRT 71
Score = 25.4 bits (56), Expect = 9.9
Identities = 2/14 (14%), Positives = 5/14 (35%)
Query: 275 HMRRHTGEKPHKCT 288
+ + H C+
Sbjct: 8 PQIDSSRIRSHICS 21
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.9 bits (131), Expect = 5e-08
Identities = 46/307 (14%), Positives = 93/307 (30%), Gaps = 84/307 (27%)
Query: 1 MEDGEEGVKDNESLGLTSEYLGSRGLSDLPP-----PPTATSSIGSA--EFPFPLDGSRL 53
++ + +E L +YL R DLP P S I + + D +
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCR-PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH 349
Query: 54 LASPRSHLKQNRKRALSA-SP------YSD-SI----ADIHT---------MIRFSPNSL 92
+ + L + +L+ P + S+ A I T +I+ +
Sbjct: 350 VNCDK--LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV 407
Query: 93 VNSLVNSTASSRSGGSYGHLSAGALS-PALHPSMTPHLQQLQA-H--LLRSGGLLPPQPP 148
VN L + + +S P+++ + L+ A H ++ + P
Sbjct: 408 VNKLHKYSLVEK------QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI----PK 457
Query: 149 FYHPHALSPLNSD----------LHSTKLGDK--------------EAKVRAEADTSSMG 184
+ L P D L + + ++ E K+R D+++
Sbjct: 458 TFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIR--HDSTAWN 515
Query: 185 GGASWKPMKIK-RETKQH-SPESPAGDKYEP--GDFV---ETNCHWKDCGLEFGTQDILV 237
S + + K + P ++ DF+ E N D+L
Sbjct: 516 ASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKY------TDLLR 569
Query: 238 KHINNDH 244
+ +
Sbjct: 570 IALMAED 576
Score = 49.9 bits (118), Expect = 2e-06
Identities = 60/471 (12%), Positives = 122/471 (25%), Gaps = 134/471 (28%)
Query: 43 EFPFPLDGSRLLASPRSHLKQNRKRALSASPYSDSIAD-IHTMIRFSPNSLVNSLVNSTA 101
F D + P+S L + + S + S + + +V V
Sbjct: 28 AFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVL 87
Query: 102 SSRSGGSYGHLSAGALSPALHPSM-TPHLQQLQAHLLRSGGLLPPQPPFYH---PHALSP 157
+Y L + + PSM T + + L + Y+
Sbjct: 88 RI----NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK----YNVSRLQPYLK 139
Query: 158 LNSDLHSTKLGDKEAKVRAEADTSSMGG-GASWKPMKIKRETKQHSPESPAGDKYEPGDF 216
L L + V + + G G +W + + K
Sbjct: 140 LRQALLELR---PAKNVLIDG----VLGSGKTWVALDVCLSYKVQ-------------CK 179
Query: 217 VETNCHWKDCGLEFG---TQDILVKHINNDHIHANKKSFICRWEDCTRDEKPFKAQYMLV 273
++ W L + + +++ + + +R + + +
Sbjct: 180 MDFKIFW----LNLKNCNSPETVLEMLQKLLYQIDP-------NWTSRSDHSSNIKLRIH 228
Query: 274 V---HMRRHTGEKPHK-C----------TDLEAFDTSSRVAARRIRGWKISRRISDLIPV 319
+RR KP++ C AF+ S ++ L+
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI----------------LLTT 272
Query: 320 RNRTRVNILAVVKR----LVMRRIELNIRTELTLMS--LNVQFEILSRPKLK--PYVCG- 370
R + + L+ L + L +L+ L+ + + L R L P
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI 332
Query: 371 ------EENCT----KRYT---------------DPSSLRKH-----I--KTVHAPASL- 397
+ T K +P+ RK + + H P L
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL 392
Query: 398 -----NPVPQHKDMQDIQSNEVTQS-------NMRQSTYQRTLEYVEQCQN 436
+ + D+ + + S S LE + +N
Sbjct: 393 SLIWFDVIKS--DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN 441
Score = 48.7 bits (115), Expect = 4e-06
Identities = 36/244 (14%), Positives = 70/244 (28%), Gaps = 49/244 (20%)
Query: 275 HMRRHTGEKPHKCTDL-----EAF--DTSSRVAARRIRGWKISRRISDLIPVRNR-TRVN 326
HM TGE ++ D+ +AF + + + I +I ++ +
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL 65
Query: 327 IL---------AVVKRLVMRRIELN-------IRTELTLMSLNVQFEILSR-------PK 363
L +V++ V + +N I+TE S+ + I R
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125
Query: 364 LKPY-VCGEENCTKRYTDPSSLRKHI-----------KTVHAPASLNPVPQHKDMQDIQS 411
Y V + K LR KT A +Q
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVC----LSYKVQCKMD 181
Query: 412 NEVTQSNMRQSTYQRTLEYVEQCQNWVSSSTQPAPAGPPSAATGNMVINDRNTSLSSLLE 471
++ N++ +E Q + + ++ + I+ L LL+
Sbjct: 182 FKIFWLNLKN--CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239
Query: 472 ENRF 475
+
Sbjct: 240 SKPY 243
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 48.1 bits (115), Expect = 5e-08
Identities = 13/44 (29%), Positives = 16/44 (36%), Gaps = 3/44 (6%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCT 288
+K F C W C F L H R H+G KP +
Sbjct: 6 SGTGEKPFACTWPGC---GWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 36.5 bits (85), Expect = 8e-04
Identities = 7/14 (50%), Positives = 7/14 (50%)
Query: 275 HMRRHTGEKPHKCT 288
TGEKP CT
Sbjct: 3 SGSSGTGEKPFACT 16
Score = 34.2 bits (79), Expect = 0.005
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKT 390
KP+ C C R++ L +H ++
Sbjct: 11 KPFACTWPGCGWRFSRSDELSRHRRS 36
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 48.1 bits (115), Expect = 1e-07
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 244 HIHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCT 288
++ + + C E C ++ F L H+R HTG+KP +C
Sbjct: 12 YVVPKMRPYACPVESC---DRRFSRSDELTRHIRIHTGQKPFQCR 53
Score = 34.6 bits (80), Expect = 0.007
Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 8/60 (13%)
Query: 221 CHWKDCGLEFGTQDILVKHINNDHIHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHT 280
C + C F D L +HI IH +K F C C + F L H+R HT
Sbjct: 22 CPVESCDRRFSRSDELTRHI---RIHTGQKPFQC--RIC---MRNFSRSDHLTTHIRTHT 73
Score = 32.7 bits (75), Expect = 0.027
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 361 RPKLKPYVCGEENCTKRYTDPSSLRKHIKT 390
PK++PY C E+C +R++ L +HI+
Sbjct: 14 VPKMRPYACPVESCDRRFSRSDELTRHIRI 43
Score = 26.9 bits (60), Expect = 3.4
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKT 390
KP+ C C + ++ L HI+T
Sbjct: 48 KPFQC--RICMRNFSRSDHLTTHIRT 71
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 46.6 bits (112), Expect = 6e-07
Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 8/64 (12%)
Query: 224 KDCGLEFGTQDILVKHINNDHIHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEK 283
K C L KH+ IH++++ F C + C + L VH+R HTG+
Sbjct: 40 KTCDYAAADSSSLNKHL---RIHSDERPFKC--QIC---PYASRNSSQLTVHLRSHTGDS 91
Query: 284 PHKC 287
Sbjct: 92 GPSS 95
Score = 40.5 bits (96), Expect = 9e-05
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 264 KPFKAQYMLVVHMRRHTGEKPHKCTDL-EAFDTSS 297
K F + L HMR HTG KP+KC A SS
Sbjct: 16 KCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSS 50
Score = 29.7 bits (68), Expect = 0.55
Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKT 390
KPY C C D SSL KH++
Sbjct: 35 KPYKCKT--CDYAAADSSSLNKHLRI 58
Score = 28.5 bits (65), Expect = 1.3
Identities = 6/26 (23%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKT 390
P+ C C K ++ L+ H++
Sbjct: 7 GPHKCEV--CGKCFSRKDKLKTHMRC 30
Score = 28.2 bits (64), Expect = 1.9
Identities = 6/26 (23%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKT 390
+P+ C C + S L H+++
Sbjct: 63 RPFKCQI--CPYASRNSSQLTVHLRS 86
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 45.9 bits (110), Expect = 1e-06
Identities = 18/65 (27%), Positives = 23/65 (35%), Gaps = 8/65 (12%)
Query: 224 KDCGLEFGTQDILVKHINNDHIHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEK 283
C F QD L H +IH+ +K F C ++C K F L VH H
Sbjct: 49 DICHKAFRRQDHLRDH---RYIHSKEKPFKC--QEC---GKGFCQSRTLAVHKTLHMQTS 100
Query: 284 PHKCT 288
Sbjct: 101 SPTAA 105
Score = 44.0 bits (105), Expect = 6e-06
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCTD 289
KK FIC + C + F Y L++H R HT E+P+ C
Sbjct: 11 PSKTKKEFIC--KFC---GRHFTKSYNLLIHERTHTDERPYTCDI 50
Score = 43.6 bits (104), Expect = 9e-06
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
Query: 224 KDCGLEFGTQDILVKHINNDHIHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEK 283
K CG F L+ H + H +++ + C + C K F+ Q L H H+ EK
Sbjct: 21 KFCGRHFTKSYNLLIH---ERTHTDERPYTC--DIC---HKAFRRQDHLRDHRYIHSKEK 72
Query: 284 PHKCTD 289
P KC +
Sbjct: 73 PFKCQE 78
Score = 36.6 bits (86), Expect = 0.002
Identities = 2/18 (11%), Positives = 3/18 (16%)
Query: 272 LVVHMRRHTGEKPHKCTD 289
+K C
Sbjct: 5 SSGGRLPSKTKKEFICKF 22
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 44.7 bits (107), Expect = 2e-06
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
Query: 224 KDCGLEFGTQDILVKHINNDHIHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEK 283
K CG F L H+ IH++ + + C + C K F + + H HTGEK
Sbjct: 5 KICGKSFKRSSTLSTHL---LIHSDTRPYPC--QYC---GKRFHQKSDMKKHTFIHTGEK 56
Query: 284 PHKCTD 289
PHKC
Sbjct: 57 PHKCQV 62
Score = 30.1 bits (69), Expect = 0.32
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 8/58 (13%)
Query: 224 KDCGLEFGTQDILVKHINNDHIHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTG 281
+ CG F + + KH IH +K C + C K F L+ H R+HTG
Sbjct: 33 QYCGKRFHQKSDMKKH---TFIHTGEKPHKC--QVC---GKAFSQSSNLITHSRKHTG 82
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 43.3 bits (103), Expect = 3e-06
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 6/44 (13%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRR-HTGEKPHKC 287
+ K +IC + C K F L H+++ HT E+PHKC
Sbjct: 6 SGSVGKPYIC--QSC---GKGFSRPDHLNGHIKQVHTSERPHKC 44
Score = 34.5 bits (80), Expect = 0.004
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKTVH 392
KPY+C C K ++ P L HIK VH
Sbjct: 11 KPYICQS--CGKGFSRPDHLNGHIKQVH 36
Score = 29.1 bits (66), Expect = 0.37
Identities = 3/15 (20%), Positives = 5/15 (33%)
Query: 275 HMRRHTGEKPHKCTD 289
+ KP+ C
Sbjct: 3 SGSSGSVGKPYICQS 17
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 42.9 bits (102), Expect = 6e-06
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 9/34 (26%)
Query: 263 EKPFK--------AQ-YMLVVHMRRHTGEKPHKC 287
P K + L +H R H ++P KC
Sbjct: 7 GHPEKCSECSYSCSSKAALRIHERIHCTDRPFKC 40
Score = 33.6 bits (78), Expect = 0.011
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 9/35 (25%)
Query: 263 EKPFK--------AQYM-LVVHMRRHTGEKPHKCT 288
++PFK Q L HM++ G+ +
Sbjct: 35 DRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGPSS 69
Score = 32.5 bits (75), Expect = 0.028
Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKT 390
P C E C+ + ++LR H +
Sbjct: 8 HPEKCSE--CSYSCSSKAALRIHERI 31
Score = 31.3 bits (72), Expect = 0.084
Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKT 390
+P+ C C+ PS+L KH+K
Sbjct: 36 RPFKCNY--CSFDTKQPSNLSKHMKK 59
Score = 30.9 bits (71), Expect = 0.11
Identities = 3/12 (25%), Positives = 5/12 (41%)
Query: 277 RRHTGEKPHKCT 288
+ P KC+
Sbjct: 2 SSGSSGHPEKCS 13
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 43.6 bits (104), Expect = 9e-06
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 8/65 (12%)
Query: 225 DCGLEFGTQDILVKHINNDHIHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKP 284
CG F + +H++ +H + + C C K FK ++ LV HM+ HTG KP
Sbjct: 14 QCGKSFTHKSQRDRHMS---MHLGLRPYGC--GVC---GKKFKMKHHLVGHMKIHTGIKP 65
Query: 285 HKCTD 289
++C
Sbjct: 66 YECNI 70
Score = 37.4 bits (88), Expect = 0.002
Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 11/79 (13%)
Query: 224 KDCGLEFGTQDILVKHINNDHIHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEK 283
CG +F + LV H+ IH K + C C K F + H + K
Sbjct: 41 GVCGKKFKMKHHLVGHMK---IHTGIKPYEC--NIC---AKRFMWRDSF--HRHVTSCTK 90
Query: 284 PHKCTDLE-AFDTSSRVAA 301
++ E +S ++
Sbjct: 91 SYEAAKAEQNTTEASGPSS 109
Score = 30.5 bits (70), Expect = 0.38
Identities = 3/12 (25%), Positives = 6/12 (50%)
Query: 276 MRRHTGEKPHKC 287
+G+K + C
Sbjct: 2 SSGSSGDKLYPC 13
Score = 28.2 bits (64), Expect = 2.0
Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKT 390
KPY C C KR+ S +H+ +
Sbjct: 64 KPYECNI--CAKRFMWRDSFHRHVTS 87
Score = 26.6 bits (60), Expect = 6.9
Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKT 390
+PY CG C K++ L H+K
Sbjct: 36 RPYGCGV--CGKKFKMKHHLVGHMKI 59
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 41.8 bits (99), Expect = 9e-06
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCT 288
+ +K F C C EK F ++ L+VH + H EKP +
Sbjct: 4 GSSGEKPFGC--SCC---EKAFSSKSYLLVHQQTHAEEKPSGPS 42
Score = 30.6 bits (70), Expect = 0.091
Identities = 9/20 (45%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Query: 279 HTGEKPHKCTDLE-AFDTSS 297
+GEKP C+ E AF + S
Sbjct: 5 SSGEKPFGCSCCEKAFSSKS 24
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.3 bits (98), Expect = 1e-05
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCT 288
A KK F C +C +K F L VH R HTGEKP +
Sbjct: 6 SGAGKKLFKC--NEC---KKTFTQSSSLTVHQRIHTGEKPSGPS 44
Score = 32.9 bits (76), Expect = 0.012
Identities = 4/13 (30%), Positives = 5/13 (38%)
Query: 275 HMRRHTGEKPHKC 287
G+K KC
Sbjct: 3 SGSSGAGKKLFKC 15
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 42.1 bits (100), Expect = 1e-05
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 244 HIHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKC 287
H+ + K + C + C + F+ + L H HTGEKP++C
Sbjct: 10 HMTHSDKPYKC--DRC---QASFRYKGNLASHKTVHTGEKPYRC 48
Score = 36.3 bits (85), Expect = 0.001
Identities = 17/62 (27%), Positives = 23/62 (37%), Gaps = 8/62 (12%)
Query: 224 KDCGLEFGTQDILVKHINNDHIHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEK 283
C F + L H +H +K + C C F L H R H+GEK
Sbjct: 21 DRCQASFRYKGNLASH---KTVHTGEKPYRC--NIC---GAQFNRPANLKTHTRIHSGEK 72
Query: 284 PH 285
P+
Sbjct: 73 PY 74
Score = 27.8 bits (63), Expect = 1.6
Identities = 8/23 (34%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKH 387
KPY C C ++ P++L+ H
Sbjct: 44 KPYRCNI--CGAQFNRPANLKTH 64
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 41.4 bits (98), Expect = 1e-05
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCT 288
A + C C EK F + L+VH R HT EKP +
Sbjct: 6 SGAGVNPYKC--SQC---EKSFSGKLRLLVHQRMHTREKPSGPS 44
Score = 31.4 bits (72), Expect = 0.053
Identities = 4/15 (26%), Positives = 6/15 (40%)
Query: 275 HMRRHTGEKPHKCTD 289
G P+KC+
Sbjct: 3 SGSSGAGVNPYKCSQ 17
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 41.0 bits (97), Expect = 1e-05
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCT 288
+K F C C K F+A+ LV H R HTGEK +
Sbjct: 6 SGTGQKPFEC--THC---GKSFRAKGNLVTHQRIHTGEKSGPSS 44
Score = 32.9 bits (76), Expect = 0.013
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 275 HMRRHTGEKPHKCTD 289
TG+KP +CT
Sbjct: 3 SGSSGTGQKPFECTH 17
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 41.3 bits (98), Expect = 2e-05
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 250 KSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCTD 289
+SF+C E CT + F Q L H R HT EKP+ C
Sbjct: 1 RSFVC--EVCT---RAFARQEHLKRHYRSHTNEKPYPCGL 35
Score = 32.1 bits (74), Expect = 0.032
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKTVH 392
KPY CG C + +T L +H + +H
Sbjct: 29 KPYPCGL--CNRAFTRRDLLIRHAQKIH 54
Score = 28.2 bits (64), Expect = 0.93
Identities = 6/23 (26%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKH 387
+ +VC CT+ + L++H
Sbjct: 1 RSFVCEV--CTRAFARQEHLKRH 21
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 41.7 bits (99), Expect = 2e-05
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCTDL-EAFDTSS 297
IH+ +K + C +C K F +LV H R HTGEKP+KC + +AF +S
Sbjct: 8 IHSGEKPYGC--VEC---GKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNS 56
Score = 39.0 bits (92), Expect = 1e-04
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 8/62 (12%)
Query: 224 KDCGLEFGTQDILVKHINNDHIHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEK 283
+CG F ILV+H +H +K + C +C K F L+ H R HT
Sbjct: 18 VECGKAFSRSSILVQH---QRVHTGEKPYKC--LEC---GKAFSQNSGLINHQRIHTSGP 69
Query: 284 PH 285
Sbjct: 70 SS 71
Score = 35.5 bits (83), Expect = 0.003
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 272 LVVHMRRHTGEKPHKCTDL-EAFDTSS 297
H+GEKP+ C + +AF SS
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSS 28
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.5 bits (96), Expect = 2e-05
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCT 288
+K F C +C +K F + L+VH R HTGEKP +
Sbjct: 6 SGTGEKPFEC--SEC---QKAFNTKSNLIVHQRTHTGEKPSGPS 44
Score = 32.5 bits (75), Expect = 0.017
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 275 HMRRHTGEKPHKCTD 289
TGEKP +C++
Sbjct: 3 SGSSGTGEKPFECSE 17
Score = 26.7 bits (60), Expect = 2.0
Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKH 387
KP+ C E C K + S+L H
Sbjct: 11 KPFECSE--CQKAFNTKSNLIVH 31
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 40.6 bits (96), Expect = 3e-05
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCT 288
+ +K + C EDC K + + L +H R H GEK +
Sbjct: 6 SGSVEKPYKC--EDC---GKGYNRRLNLDMHQRVHMGEKTSGPS 44
Score = 33.6 bits (78), Expect = 0.006
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 275 HMRRHTGEKPHKCTD 289
+ EKP+KC D
Sbjct: 3 SGSSGSVEKPYKCED 17
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 40.2 bits (95), Expect = 3e-05
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCT 288
K + C C K F + L+VH R HTG KP +
Sbjct: 6 SGTGVKPYGCS--QC---AKTFSLKSQLIVHQRSHTGVKPSGPS 44
Score = 32.9 bits (76), Expect = 0.012
Identities = 5/15 (33%), Positives = 7/15 (46%)
Query: 275 HMRRHTGEKPHKCTD 289
TG KP+ C+
Sbjct: 3 SGSSGTGVKPYGCSQ 17
Score = 26.7 bits (60), Expect = 2.2
Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKH 387
KPY C + C K ++ S L H
Sbjct: 11 KPYGCSQ--CAKTFSLKSQLIVH 31
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.2 bits (95), Expect = 3e-05
Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCT 288
+K + C E C K + +++ L +H + HTGE+P +
Sbjct: 6 SGTGEKPYKC--EKC---GKGYNSKFNLDMHQKVHTGERPSGPS 44
Score = 34.8 bits (81), Expect = 0.003
Identities = 7/24 (29%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 275 HMRRHTGEKPHKCTDL-EAFDTSS 297
TGEKP+KC + +++
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKF 26
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.2 bits (95), Expect = 3e-05
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCT 288
A +K + C +C K F ++ L++HMR H+GEKP +
Sbjct: 6 SGAGEKPYGCS--EC---GKAFSSKSYLIIHMRTHSGEKPSGPS 44
Score = 32.5 bits (75), Expect = 0.018
Identities = 8/24 (33%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 275 HMRRHTGEKPHKCTDL-EAFDTSS 297
GEKP+ C++ +AF + S
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKS 26
Score = 27.1 bits (61), Expect = 1.5
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKT 390
KPY C E C K ++ S L H++T
Sbjct: 11 KPYGCSE--CGKAFSSKSYLIIHMRT 34
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.2 bits (95), Expect = 3e-05
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCT 288
+ +K ++C + C K F LV H R HTGEKP +
Sbjct: 6 SGSGEKPYVC--DYCG---KAFGLSAELVRHQRIHTGEKPSGPS 44
Score = 32.5 bits (75), Expect = 0.017
Identities = 8/24 (33%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 275 HMRRHTGEKPHKCTDL-EAFDTSS 297
+GEKP+ C +AF S+
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSA 26
Score = 27.5 bits (62), Expect = 1.2
Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKH 387
KPYVC C K + + L +H
Sbjct: 11 KPYVCDY--CGKAFGLSAELVRH 31
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.2 bits (95), Expect = 4e-05
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCT 288
+K + C DC K F + L +H + HTGE+ +
Sbjct: 6 SGTGEKPYKC--SDC---GKSFTWKSRLRIHQKCHTGERHSGPS 44
Score = 35.2 bits (82), Expect = 0.002
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 275 HMRRHTGEKPHKCTD 289
TGEKP+KC+D
Sbjct: 3 SGSSGTGEKPYKCSD 17
Score = 28.3 bits (64), Expect = 0.61
Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKH 387
KPY C + C K +T S LR H
Sbjct: 11 KPYKCSD--CGKSFTWKSRLRIH 31
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.2 bits (95), Expect = 4e-05
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCT 288
+ + C +C K F +Y L+ H R H GEKP +
Sbjct: 6 SGTGENPYECH--EC---GKAFSRKYQLISHQRTHAGEKPSGPS 44
Score = 33.6 bits (78), Expect = 0.006
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 274 VHMRRHTGEKPHKCTD 289
TGE P++C +
Sbjct: 2 SSGSSGTGENPYECHE 17
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.8 bits (94), Expect = 4e-05
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCT 288
+ FIC +C K F + L++H + HTGE+P +
Sbjct: 6 SGTGENPFIC--SEC---GKVFTHKTNLIIHQKIHTGERPSGPS 44
Score = 32.9 bits (76), Expect = 0.013
Identities = 5/15 (33%), Positives = 7/15 (46%)
Query: 275 HMRRHTGEKPHKCTD 289
TGE P C++
Sbjct: 3 SGSSGTGENPFICSE 17
Score = 27.5 bits (62), Expect = 1.0
Identities = 8/23 (34%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKH 387
P++C E C K +T ++L H
Sbjct: 11 NPFICSE--CGKVFTHKTNLIIH 31
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 39.8 bits (94), Expect = 4e-05
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCT 288
+K + C E+C K F + L H HTGEKP +
Sbjct: 6 SGTGEKPYKC--EEC---GKGFICRRDLYTHHMVHTGEKPSGPS 44
Score = 33.3 bits (77), Expect = 0.008
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 275 HMRRHTGEKPHKC 287
TGEKP+KC
Sbjct: 3 SGSSGTGEKPYKC 15
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 41.0 bits (97), Expect = 4e-05
Identities = 11/70 (15%), Positives = 20/70 (28%), Gaps = 12/70 (17%)
Query: 224 KDCGLEFGTQDILVKHINNDHIH----ANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRH 279
C F + +L H + +F+C C K F + + H
Sbjct: 19 SHCDKTFRQKQLLDMH---FKRYHDPNFVPAAFVC--SKC---GKTFTRRNTMARHADNC 70
Query: 280 TGEKPHKCTD 289
G + +
Sbjct: 71 AGPDGVEGEN 80
Score = 38.7 bits (91), Expect = 3e-04
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 272 LVVHMRRHTGEKPHKCT 288
R HTGEKP+ C+
Sbjct: 3 SGSSGRTHTGEKPYACS 19
Score = 29.0 bits (66), Expect = 0.75
Identities = 6/30 (20%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 361 RPKLKPYVCGEENCTKRYTDPSSLRKHIKT 390
+VC + C K +T +++ +H
Sbjct: 42 NFVPAAFVCSK--CGKTFTRRNTMARHADN 69
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.8 bits (94), Expect = 4e-05
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCT 288
+K +IC +C K F + L+ H + HT +KP +
Sbjct: 6 SGTGEKPYIC--AEC---GKAFTIRSNLIKHQKIHTKQKPSGPS 44
Score = 34.0 bits (79), Expect = 0.005
Identities = 9/24 (37%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 275 HMRRHTGEKPHKCTDL-EAFDTSS 297
TGEKP+ C + +AF S
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRS 26
Score = 28.6 bits (65), Expect = 0.37
Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKH 387
KPY+C E C K +T S+L KH
Sbjct: 11 KPYICAE--CGKAFTIRSNLIKH 31
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 41.3 bits (98), Expect = 4e-05
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 246 HANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCTD 289
+ C E C K F+ Y L H H+GEKP+ C
Sbjct: 2 SSGSSGVAC--EIC---GKIFRDVYHLNRHKLSHSGEKPYSCPV 40
Score = 39.0 bits (92), Expect = 2e-04
Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 10/68 (14%)
Query: 224 KDCGLEFGTQDILVKHINNDHIHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGE- 282
+ CG F L +H H+ +K + C C FK + + H+R H G
Sbjct: 11 EICGKIFRDVYHLNRHKL---SHSGEKPYSC--PVC---GLRFKRKDRMSYHVRSHDGSV 62
Query: 283 -KPHKCTD 289
KP+ C
Sbjct: 63 GKPYICQS 70
Score = 33.2 bits (77), Expect = 0.031
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKTVH 392
KPY+C C K ++ P L HIK VH
Sbjct: 64 KPYICQS--CGKGFSRPDHLNGHIKQVH 89
Score = 32.5 bits (75), Expect = 0.063
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 11/63 (17%)
Query: 224 KDCGLEFGTQDILVKHINNDHIHA--NKKSFICRWEDCTRDEKPFKAQYMLVVHMRR-HT 280
CGL F +D + H+ H K +IC + C K F L H+++ H+
Sbjct: 39 PVCGLRFKRKDRMSYHV---RSHDGSVGKPYIC--QSC---GKGFSRPDHLNGHIKQVHS 90
Query: 281 GEK 283
G
Sbjct: 91 GPS 93
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 43.2 bits (103), Expect = 4e-05
Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 224 KDCGLEFGTQDILVKHINNDHIHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEK 283
+CG F + L H H +K + C +C K F L H R HTGEK
Sbjct: 81 PECGKSFSQRANLRAH---QRTHTGEKPYAC--PEC---GKSFSQLAHLRAHQRTHTGEK 132
Query: 284 PHKCTD 289
P+KC +
Sbjct: 133 PYKCPE 138
Score = 42.8 bits (102), Expect = 6e-05
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
Query: 224 KDCGLEFGTQDILVKHINNDHIHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEK 283
+CG F D L +H H +K + C +C K F + L H R HTGEK
Sbjct: 25 PECGKSFSRSDHLAEH---QRTHTGEKPYKC--PEC---GKSFSDKKDLTRHQRTHTGEK 76
Query: 284 PHKCTD 289
P+KC +
Sbjct: 77 PYKCPE 82
Score = 42.8 bits (102), Expect = 6e-05
Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 224 KDCGLEFGTQDILVKHINNDHIHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEK 283
+CG F L H H +K + C +C K F + L H R HTGEK
Sbjct: 109 PECGKSFSQLAHLRAH---QRTHTGEKPYKC--PEC---GKSFSREDNLHTHQRTHTGEK 160
Query: 284 PHKCTD 289
P+KC +
Sbjct: 161 PYKCPE 166
Score = 37.8 bits (89), Expect = 0.003
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 272 LVVHMRRHTGEKPHKCTD 289
V GEKP+ C +
Sbjct: 9 SVAQAALEPGEKPYACPE 26
Score = 35.9 bits (84), Expect = 0.015
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 8/61 (13%)
Query: 224 KDCGLEFGTQDILVKHINNDHIHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEK 283
+CG F +D L H H +K + C +C K F + L VH R HTG+K
Sbjct: 137 PECGKSFSREDNLHTH---QRTHTGEKPYKC--PEC---GKSFSRRDALNVHQRTHTGKK 188
Query: 284 P 284
Sbjct: 189 T 189
Score = 28.6 bits (65), Expect = 3.1
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKH 387
KPY C E C K ++D L +H
Sbjct: 48 KPYKCPE--CGKSFSDKKDLTRH 68
Score = 28.6 bits (65), Expect = 3.5
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKH 387
KPY C E C K ++ + LR H
Sbjct: 104 KPYACPE--CGKSFSQLAHLRAH 124
Score = 28.6 bits (65), Expect = 3.6
Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKH 387
KPY C E C K ++ ++LR H
Sbjct: 76 KPYKCPE--CGKSFSQRANLRAH 96
Score = 28.6 bits (65), Expect = 3.9
Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKH 387
KPY C E C K ++ +L H
Sbjct: 132 KPYKCPE--CGKSFSREDNLHTH 152
Score = 28.2 bits (64), Expect = 4.0
Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKH 387
KPY C E C K ++ +L H
Sbjct: 160 KPYKCPE--CGKSFSRRDALNVH 180
Score = 27.4 bits (62), Expect = 7.7
Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKH 387
KPY C E C K ++ L +H
Sbjct: 20 KPYACPE--CGKSFSRSDHLAEH 40
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 6e-05
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCT 288
+K + C + C K F+ L VH R HTGEKP +
Sbjct: 6 SGTGEKPYKC--DVC---HKSFRYGSSLTVHQRIHTGEKPSGPS 44
Score = 33.6 bits (78), Expect = 0.008
Identities = 9/24 (37%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 275 HMRRHTGEKPHKCTDL-EAFDTSS 297
TGEKP+KC ++F S
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGS 26
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 7e-05
Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCT 288
+ ++ + C +C K F L+ H++RH EK +
Sbjct: 6 SGSGERPYGC--NEC---GKNFGRHSHLIEHLKRHFREKSSGPS 44
Score = 30.6 bits (70), Expect = 0.097
Identities = 4/15 (26%), Positives = 8/15 (53%)
Query: 275 HMRRHTGEKPHKCTD 289
+GE+P+ C +
Sbjct: 3 SGSSGSGERPYGCNE 17
Score = 27.5 bits (62), Expect = 1.3
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKT 390
+PY C E C K + S L +H+K
Sbjct: 11 RPYGCNE--CGKNFGRHSHLIEHLKR 34
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 7e-05
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKC 287
++ +IC C K F + L+ H + HTGEKP
Sbjct: 6 SGTGERPYIC--TVC---GKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 32.8 bits (76), Expect = 0.012
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 275 HMRRHTGEKPHKCTD 289
TGE+P+ CT
Sbjct: 3 SGSSGTGERPYICTV 17
Score = 29.4 bits (67), Expect = 0.25
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKH 387
+PY+C C K +TD S+L KH
Sbjct: 11 RPYICTV--CGKAFTDRSNLIKH 31
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.1 bits (92), Expect = 8e-05
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCT 288
+ +K + C +C K +K + L H R HTGEK +
Sbjct: 6 SGSGEKPYKC--VEC---GKGYKRRLDLDFHQRVHTGEKLSGPS 44
Score = 33.7 bits (78), Expect = 0.007
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 275 HMRRHTGEKPHKCTD 289
+GEKP+KC +
Sbjct: 3 SGSSGSGEKPYKCVE 17
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 39.7 bits (94), Expect = 9e-05
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCTD 289
++ + C ++C K F L H R HTGEKP+KC +
Sbjct: 12 QQRERRRYKC--DEC---GKSFSHSSDLSKHRRTHTGEKPYKCDE 51
Score = 35.5 bits (83), Expect = 0.003
Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 8/63 (12%)
Query: 224 KDCGLEFGTQDILVKHINNDHIHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEK 283
+CG F L KH H +K + C ++C K F + L+ H R HTG
Sbjct: 22 DECGKSFSHSSDLSKH---RRTHTGEKPYKC--DEC---GKAFIQRSHLIGHHRVHTGSG 73
Query: 284 PHK 286
P
Sbjct: 74 PSS 76
Score = 35.5 bits (83), Expect = 0.003
Identities = 2/18 (11%), Positives = 6/18 (33%)
Query: 272 LVVHMRRHTGEKPHKCTD 289
+ + +KC +
Sbjct: 6 SGRSEWQQRERRRYKCDE 23
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.1 bits (92), Expect = 9e-05
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCT 288
+K + C C K F + L VH + HTGEKP +
Sbjct: 6 SGTGEKPYECS--IC---GKSFTKKSQLHVHQQIHTGEKPSGPS 44
Score = 32.9 bits (76), Expect = 0.011
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 274 VHMRRHTGEKPHKCTD 289
TGEKP++C+
Sbjct: 2 SSGSSGTGEKPYECSI 17
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.1 bits (92), Expect = 9e-05
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCT 288
+K CR +C K F L+VH R HTGE P +
Sbjct: 6 SGTGEKPHECR--EC---GKSFSFNSQLIVHQRIHTGENPSGPS 44
Score = 34.0 bits (79), Expect = 0.005
Identities = 9/24 (37%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 275 HMRRHTGEKPHKCTDL-EAFDTSS 297
TGEKPH+C + ++F +S
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNS 26
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 39.0 bits (92), Expect = 9e-05
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCT 288
+K F C +C K + + L H R HTGEKP +
Sbjct: 6 SGTGEKPFKC--GEC---GKSYNQRVHLTQHQRVHTGEKPSGPS 44
Score = 32.9 bits (76), Expect = 0.013
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 275 HMRRHTGEKPHKCTD 289
TGEKP KC +
Sbjct: 3 SGSSGTGEKPFKCGE 17
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.0 bits (92), Expect = 1e-04
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCT 288
+K + C DC K F + L +H + HTGE+ +
Sbjct: 6 SGTGEKPYKC--SDC---GKAFTRKSGLHIHQQSHTGERHSGPS 44
Score = 34.4 bits (80), Expect = 0.004
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 275 HMRRHTGEKPHKCTD 289
TGEKP+KC+D
Sbjct: 3 SGSSGTGEKPYKCSD 17
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.0 bits (92), Expect = 1e-04
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCT 288
++ + C +C K F + L++H R HTGEKP +
Sbjct: 6 SGTGERHYEC--SECG---KAFARKSTLIMHQRIHTGEKPSGPS 44
Score = 32.5 bits (75), Expect = 0.016
Identities = 7/24 (29%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 275 HMRRHTGEKPHKCTDL-EAFDTSS 297
TGE+ ++C++ +AF S
Sbjct: 3 SGSSGTGERHYECSECGKAFARKS 26
Score = 25.9 bits (58), Expect = 4.2
Identities = 8/23 (34%), Positives = 11/23 (47%), Gaps = 2/23 (8%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKH 387
+ Y C E C K + S+L H
Sbjct: 11 RHYECSE--CGKAFARKSTLIMH 31
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.6 bits (91), Expect = 1e-04
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCT 288
+ +K F C ++C K F+ L H+R HTGEKP +
Sbjct: 6 SGSGEKPFKC--KEC---GKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 32.5 bits (75), Expect = 0.018
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 275 HMRRHTGEKPHKC 287
+GEKP KC
Sbjct: 3 SGSSGSGEKPFKC 15
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.7 bits (91), Expect = 1e-04
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCT 288
+K + C +C K F+A+ L +H H+GEKP +
Sbjct: 6 SGTGEKPYKC--NEC---GKAFRARSSLAIHQATHSGEKPSGPS 44
Score = 32.5 bits (75), Expect = 0.017
Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 275 HMRRHTGEKPHKCTDL-EAFDTSS 297
TGEKP+KC + +AF S
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARS 26
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 38.7 bits (91), Expect = 1e-04
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCT 288
++ + C +C K FK + L+ H R HTGEKP +
Sbjct: 6 SGTGQRPYEC--IEC---GKAFKTKSSLICHRRSHTGEKPSGPS 44
Score = 33.3 bits (77), Expect = 0.009
Identities = 8/24 (33%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 275 HMRRHTGEKPHKCTDL-EAFDTSS 297
TG++P++C + +AF T S
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKS 26
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.6 bits (91), Expect = 1e-04
Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 5/44 (11%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCT 288
+K F C + C K F + L H HT EKP +
Sbjct: 6 SGTGEKPFKC--DIC---GKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 35.2 bits (82), Expect = 0.002
Identities = 9/25 (36%), Positives = 11/25 (44%), Gaps = 1/25 (4%)
Query: 274 VHMRRHTGEKPHKCTDL-EAFDTSS 297
TGEKP KC ++F S
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRS 26
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 38.6 bits (91), Expect = 1e-04
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKC 287
+K + C +C +K F + L+VH R HTGE
Sbjct: 6 SGTGEKPYEC--NEC---QKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 34.8 bits (81), Expect = 0.003
Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 274 VHMRRHTGEKPHKCTDL-EAFDTSS 297
TGEKP++C + +AF+T S
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTKS 26
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.6 bits (91), Expect = 1e-04
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCT 288
+ +K + C +C K F L H R HTG +P +
Sbjct: 6 SGSGEKPYKC--SEC---GKAFHRHTHLNEHRRIHTGYRPSGPS 44
Score = 33.6 bits (78), Expect = 0.007
Identities = 8/24 (33%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 275 HMRRHTGEKPHKCTDL-EAFDTSS 297
+GEKP+KC++ +AF +
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHT 26
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 38.6 bits (91), Expect = 1e-04
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 264 KPFKAQYMLVVHMRRHTGEKPHKC 287
K F+++ L++H R HTGE
Sbjct: 20 KAFRSKSYLIIHTRTHTGESGPSS 43
Score = 33.6 bits (78), Expect = 0.007
Identities = 8/24 (33%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 275 HMRRHTGEKPHKCTDL-EAFDTSS 297
TG KP+ C + +AF + S
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKS 26
Score = 27.4 bits (62), Expect = 1.1
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKT 390
KPYVC E C K + S L H +T
Sbjct: 11 KPYVCNE--CGKAFRSKSYLIIHTRT 34
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 38.6 bits (91), Expect = 1e-04
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCT 288
+K + C + C K F+ LV H H+GE+P +
Sbjct: 6 SGTGEKPYKC--QVC---GKAFRVSSHLVQHHSVHSGERPSGPS 44
Score = 33.6 bits (78), Expect = 0.008
Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 275 HMRRHTGEKPHKCTDL-EAFDTSS 297
TGEKP+KC +AF SS
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSS 26
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 38.3 bits (90), Expect = 1e-04
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCT 288
+ +K F C E+C K F H R H+GEKP +
Sbjct: 6 SGSGEKPFKC--EECG---KGFYTNSQCYSHQRSHSGEKPSGPS 44
Score = 32.9 bits (76), Expect = 0.012
Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 275 HMRRHTGEKPHKCTDL-EAFDTSS 297
+GEKP KC + + F T+S
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNS 26
Score = 27.5 bits (62), Expect = 0.96
Identities = 8/23 (34%), Positives = 10/23 (43%), Gaps = 2/23 (8%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKH 387
KP+ C E C K + S H
Sbjct: 11 KPFKCEE--CGKGFYTNSQCYSH 31
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 38.4 bits (89), Expect = 1e-04
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 5/42 (11%)
Query: 246 HANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKC 287
+K C E C K F+ Y L H H+GEKP+
Sbjct: 7 GRTRKQVAC--EIC---GKIFRDVYHLNRHKLSHSGEKPYSS 43
Score = 26.8 bits (59), Expect = 2.1
Identities = 9/31 (29%), Positives = 12/31 (38%), Gaps = 2/31 (6%)
Query: 360 SRPKLKPYVCGEENCTKRYTDPSSLRKHIKT 390
S K C E C K + D L +H +
Sbjct: 6 SGRTRKQVAC--EICGKIFRDVYHLNRHKLS 34
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 38.3 bits (90), Expect = 1e-04
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCT 288
+K++ C +C + F L +H H GEKP +
Sbjct: 6 SGMGEKTWKC--REC---DMCFSQASSLRLHQNVHVGEKPSGPS 44
Score = 31.7 bits (73), Expect = 0.032
Identities = 5/15 (33%), Positives = 6/15 (40%)
Query: 275 HMRRHTGEKPHKCTD 289
GEK KC +
Sbjct: 3 SGSSGMGEKTWKCRE 17
Score = 29.4 bits (67), Expect = 0.23
Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKH 387
K + C E C ++ SSLR H
Sbjct: 11 KTWKCRE--CDMCFSQASSLRLH 31
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 38.3 bits (90), Expect = 1e-04
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 5/43 (11%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKC 287
+ +K + C +C K F + +L+VH R H G
Sbjct: 6 SGSGEKPYECN--ECG---KAFIWKSLLIVHERTHAGVSGPSS 43
Score = 32.9 bits (76), Expect = 0.013
Identities = 5/15 (33%), Positives = 9/15 (60%)
Query: 275 HMRRHTGEKPHKCTD 289
+GEKP++C +
Sbjct: 3 SGSSGSGEKPYECNE 17
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 38.3 bits (90), Expect = 1e-04
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCT 288
+K + C +C K F L H + HTGEKP +
Sbjct: 6 SGTGEKRYKC--NEC---GKVFSRNSQLSQHQKIHTGEKPSGPS 44
Score = 33.3 bits (77), Expect = 0.011
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 275 HMRRHTGEKPHKC 287
TGEK +KC
Sbjct: 3 SGSSGTGEKRYKC 15
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 1e-04
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCT 288
+K + C +C K F+A L H HTGEKP +
Sbjct: 6 SGTGEKPYKC--NEC---GKAFRAHSNLTTHQVIHTGEKPSGPS 44
Score = 33.6 bits (78), Expect = 0.006
Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 275 HMRRHTGEKPHKCTDL-EAFDTSS 297
TGEKP+KC + +AF S
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHS 26
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 2e-04
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 5/43 (11%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKC 287
+K + C +C K F + L H + HTGEKP
Sbjct: 6 SGTGEKPYRC--AEC---GKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.013
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 275 HMRRHTGEKPHKCTD 289
TGEKP++C +
Sbjct: 3 SGSSGTGEKPYRCAE 17
Score = 29.4 bits (67), Expect = 0.24
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKH 387
KPY C E C K +TD S+L H
Sbjct: 11 KPYRCAE--CGKAFTDRSNLFTH 31
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 38.3 bits (90), Expect = 2e-04
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCT 288
+K F C +C K F + L VH + HTGEKP +
Sbjct: 6 SGTGEKPFKC--VEC---GKGFSRRSALNVHHKLHTGEKPSGPS 44
Score = 33.6 bits (78), Expect = 0.007
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 275 HMRRHTGEKPHKCTD 289
TGEKP KC +
Sbjct: 3 SGSSGTGEKPFKCVE 17
Score = 27.5 bits (62), Expect = 1.0
Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKH 387
KP+ C E C K ++ S+L H
Sbjct: 11 KPFKCVE--CGKGFSRRSALNVH 31
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 39.4 bits (93), Expect = 2e-04
Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 5/39 (12%)
Query: 250 KSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCT 288
K F C C + F L H+R HTGEKP C
Sbjct: 2 KPFQC--RIC---MRNFSRSDHLTTHIRTHTGEKPFACD 35
Score = 36.7 bits (86), Expect = 0.002
Identities = 14/65 (21%), Positives = 18/65 (27%), Gaps = 9/65 (13%)
Query: 224 KDCGLEFGTQDILVKHINNDHIHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEK 283
+ C F D L HI H +K F C + C + F H
Sbjct: 7 RICMRNFSRSDHLTTHI---RTHTGEKPFAC--DIC---GRKFARSDERKRHRDIQH-IL 57
Query: 284 PHKCT 288
P
Sbjct: 58 PILED 62
Score = 30.5 bits (70), Expect = 0.23
Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 12/63 (19%)
Query: 224 KDCGLEFGTQDILVKHINNDHIHANKKSFICRWEDCTRDEKPFKAQYML---VVHMRRHT 280
CG +F D +H I + + + E+ Y L V +++
Sbjct: 35 DICGRKFARSDERKRHR---DIQ-HILPILE--DKV---EELLSKNYHLENEVARLKKLV 85
Query: 281 GEK 283
GE+
Sbjct: 86 GER 88
Score = 30.5 bits (70), Expect = 0.24
Identities = 5/26 (19%), Positives = 11/26 (42%), Gaps = 2/26 (7%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKT 390
KP+ C C +++ ++H
Sbjct: 30 KPFACDI--CGRKFARSDERKRHRDI 53
Score = 29.4 bits (67), Expect = 0.57
Identities = 8/27 (29%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 364 LKPYVCGEENCTKRYTDPSSLRKHIKT 390
+KP+ C C + ++ L HI+T
Sbjct: 1 MKPFQCRI--CMRNFSRSDHLTTHIRT 25
Score = 27.1 bits (61), Expect = 3.3
Identities = 2/25 (8%), Positives = 7/25 (28%), Gaps = 2/25 (8%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKHIK 389
P + + + + L +
Sbjct: 57 LPILEDK--VEELLSKNYHLENEVA 79
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 2e-04
Identities = 16/44 (36%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCT 288
+K F C DC K F L H R HTGEKP +
Sbjct: 6 SGTGEKPFDC--IDC---GKAFSDHIGLNQHRRIHTGEKPSGPS 44
Score = 32.9 bits (76), Expect = 0.012
Identities = 9/24 (37%), Positives = 10/24 (41%), Gaps = 1/24 (4%)
Query: 275 HMRRHTGEKPHKCTDL-EAFDTSS 297
TGEKP C D +AF
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHI 26
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 38.3 bits (90), Expect = 2e-04
Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCT 288
+K F C +C K F L H R HTGEKP +
Sbjct: 6 SGTGEKPFECA--EC---GKSFSISSQLATHQRIHTGEKPSGPS 44
Score = 32.9 bits (76), Expect = 0.012
Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 275 HMRRHTGEKPHKCTDL-EAFDTSS 297
TGEKP +C + ++F SS
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISS 26
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 2e-04
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCT 288
+K + C + C K F L H R HTGEKP +
Sbjct: 6 SGMGEKCYKC--DVC---GKEFSQSSHLQTHQRVHTGEKPSGPS 44
Score = 34.0 bits (79), Expect = 0.005
Identities = 5/14 (35%), Positives = 6/14 (42%)
Query: 274 VHMRRHTGEKPHKC 287
GEK +KC
Sbjct: 2 SSGSSGMGEKCYKC 15
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 2e-04
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCT 288
+ +K F C E+C K F L H R HTGEKP +
Sbjct: 6 SGSGEKPFKC--EEC---GKRFTQNSQLHSHQRVHTGEKPSGPS 44
Score = 33.3 bits (77), Expect = 0.010
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 275 HMRRHTGEKPHKCTD 289
+GEKP KC +
Sbjct: 3 SGSSGSGEKPFKCEE 17
Score = 27.9 bits (63), Expect = 0.68
Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKH 387
KP+ C E C KR+T S L H
Sbjct: 11 KPFKCEE--CGKRFTQNSQLHSH 31
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 37.9 bits (89), Expect = 2e-04
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCT 288
+K + C+ +C K F L+ H R HTGEKP +
Sbjct: 6 SGTGEKPYECK--ECG---KAFSQTTHLIQHQRVHTGEKPSGPS 44
Score = 32.5 bits (75), Expect = 0.017
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 275 HMRRHTGEKPHKC 287
TGEKP++C
Sbjct: 3 SGSSGTGEKPYEC 15
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 2e-04
Identities = 13/43 (30%), Positives = 16/43 (37%), Gaps = 5/43 (11%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKC 287
K ++C +C K F L H HTGEKP
Sbjct: 6 SGTGVKPYMC--NEC---GKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 33.3 bits (77), Expect = 0.008
Identities = 8/24 (33%), Positives = 11/24 (45%), Gaps = 1/24 (4%)
Query: 275 HMRRHTGEKPHKCTDL-EAFDTSS 297
TG KP+ C + +AF S
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYS 26
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 2e-04
Identities = 14/44 (31%), Positives = 17/44 (38%), Gaps = 5/44 (11%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCT 288
K + C +C K F L H R HTGEKP +
Sbjct: 6 SGTGGKPYQC--NEC---GKAFSQTSKLARHQRVHTGEKPSGPS 44
Score = 32.5 bits (75), Expect = 0.015
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 275 HMRRHTGEKPHKC 287
TG KP++C
Sbjct: 3 SGSSGTGGKPYQC 15
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 2e-04
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCT 288
+ +K + C +C K F + +L H R HTGEKP +
Sbjct: 6 SGSGEKPYGCN--ECG---KTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 34.4 bits (80), Expect = 0.004
Identities = 5/14 (35%), Positives = 7/14 (50%)
Query: 274 VHMRRHTGEKPHKC 287
+GEKP+ C
Sbjct: 2 SSGSSGSGEKPYGC 15
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 37.9 bits (89), Expect = 2e-04
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCTD 289
+K + C ++C K F+ L+ H R H+GEKP +
Sbjct: 6 SGTGEKPYNC--KECG---KSFRWASCLLKHQRVHSGEKPSGPSS 45
Score = 32.5 bits (75), Expect = 0.016
Identities = 8/24 (33%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 275 HMRRHTGEKPHKCTDL-EAFDTSS 297
TGEKP+ C + ++F +S
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWAS 26
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 2e-04
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCT 288
+K + C+ +C K F L+ H R H+GEKP +
Sbjct: 6 SGTGEKLYNCK--ECG---KSFSRAPCLLKHERLHSGEKPSGPS 44
Score = 33.3 bits (77), Expect = 0.010
Identities = 5/13 (38%), Positives = 6/13 (46%)
Query: 275 HMRRHTGEKPHKC 287
TGEK + C
Sbjct: 3 SGSSGTGEKLYNC 15
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 2e-04
Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 5/43 (11%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKC 287
+K + C DC K F + L VH R HTGE P
Sbjct: 6 SGTGEKPYECS--DC---GKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 34.1 bits (79), Expect = 0.005
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 274 VHMRRHTGEKPHKCTD 289
TGEKP++C+D
Sbjct: 2 SSGSSGTGEKPYECSD 17
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 2e-04
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCT 288
K F C +C K F + L +H + HTGEKP +
Sbjct: 6 SGTGGKHFECT--ECG---KAFTRKSTLSMHQKIHTGEKPSGPS 44
Score = 32.9 bits (76), Expect = 0.015
Identities = 8/24 (33%), Positives = 11/24 (45%), Gaps = 1/24 (4%)
Query: 275 HMRRHTGEKPHKCTDL-EAFDTSS 297
TG K +CT+ +AF S
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKS 26
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 2e-04
Identities = 11/44 (25%), Positives = 15/44 (34%), Gaps = 5/44 (11%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCT 288
+K + C C K F L H+R HT E +
Sbjct: 6 SGTGEKPYSC--NVC---GKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 34.0 bits (79), Expect = 0.005
Identities = 9/24 (37%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 275 HMRRHTGEKPHKCTDL-EAFDTSS 297
TGEKP+ C +AF S+
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSA 26
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.8 bits (89), Expect = 2e-04
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCT 288
+K + C +C K F+ L H HTGEKP +
Sbjct: 6 SGTGEKPYKC--HEC---GKVFRRNSHLARHQLIHTGEKPSGPS 44
Score = 33.2 bits (77), Expect = 0.009
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 275 HMRRHTGEKPHKC 287
TGEKP+KC
Sbjct: 3 SGSSGTGEKPYKC 15
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 2e-04
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCT 288
++ + C +C K F + L +H R H GEKP +
Sbjct: 6 SGTGERHYEC--SECG---KAFIQKSTLSMHQRIHRGEKPSGPS 44
Score = 32.5 bits (75), Expect = 0.018
Identities = 4/15 (26%), Positives = 9/15 (60%)
Query: 275 HMRRHTGEKPHKCTD 289
TGE+ ++C++
Sbjct: 3 SGSSGTGERHYECSE 17
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 2e-04
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCT 288
+K +IC +C K F + L H R HTGEKP +
Sbjct: 6 SGTGEKPYIC--NECG---KSFIQKSHLNRHRRIHTGEKPSGPS 44
Score = 32.5 bits (75), Expect = 0.018
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 275 HMRRHTGEKPHKCTD 289
TGEKP+ C +
Sbjct: 3 SGSSGTGEKPYICNE 17
Score = 26.7 bits (60), Expect = 1.8
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKH 387
KPY+C E C K + S L +H
Sbjct: 11 KPYICNE--CGKSFIQKSHLNRH 31
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 2e-04
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCT 288
+K + C +C K F + L H R HTGEKP +
Sbjct: 6 SGTGEKPYRC--GEC---GKAFAQKANLTQHQRIHTGEKPSGPS 44
Score = 32.5 bits (75), Expect = 0.018
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 275 HMRRHTGEKPHKCTD 289
TGEKP++C +
Sbjct: 3 SGSSGTGEKPYRCGE 17
Score = 26.7 bits (60), Expect = 1.9
Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKH 387
KPY CGE C K + ++L +H
Sbjct: 11 KPYRCGE--CGKAFAQKANLTQH 31
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 2e-04
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCT 288
+K + C E+C K F L H R HTGEKP +
Sbjct: 6 SGTGEKPYNC--EEC---GKAFIHDSQLQEHQRIHTGEKPSGPS 44
Score = 33.3 bits (77), Expect = 0.008
Identities = 9/24 (37%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 275 HMRRHTGEKPHKCTDL-EAFDTSS 297
TGEKP+ C + +AF S
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDS 26
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 2e-04
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCT 288
+ +K + C +C K F L H R HTGEKP +
Sbjct: 6 SGSGEKPYKC--NEC---GKVFTQNSHLTNHWRIHTGEKPSGPS 44
Score = 32.5 bits (75), Expect = 0.018
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 275 HMRRHTGEKPHKC 287
+GEKP+KC
Sbjct: 3 SGSSGSGEKPYKC 15
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 3e-04
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 5/43 (11%)
Query: 246 HANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCT 288
+K C +C K F + L++H R H +K +
Sbjct: 7 GTGEKPCKCT--ECG---KAFCWKSQLIMHQRTHVDDKHSGPS 44
Score = 32.5 bits (75), Expect = 0.016
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 275 HMRRHTGEKPHKCTDL-EAFDTSSR 298
TGEKP KCT+ +AF S+
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQ 27
Score = 27.9 bits (63), Expect = 0.82
Identities = 9/23 (39%), Positives = 10/23 (43%), Gaps = 2/23 (8%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKH 387
KP C E C K + S L H
Sbjct: 11 KPCKCTE--CGKAFCWKSQLIMH 31
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 3e-04
Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 5/44 (11%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCT 288
+K + C +C K F L H R HTG KP +
Sbjct: 6 SGTGEKPYKC--NEC---GKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 32.1 bits (74), Expect = 0.021
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 275 HMRRHTGEKPHKC 287
TGEKP+KC
Sbjct: 3 SGSSGTGEKPYKC 15
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 3e-04
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCT 288
+K + C + C K F L H R H+GEKP +
Sbjct: 6 SGTGEKPYEC--DVC---RKAFSHHASLTQHQRVHSGEKPSGPS 44
Score = 34.0 bits (79), Expect = 0.006
Identities = 8/25 (32%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 274 VHMRRHTGEKPHKCTDL-EAFDTSS 297
TGEKP++C +AF +
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHA 26
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 38.3 bits (90), Expect = 3e-04
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 272 LVVHMRRHTGEKPHKCT 288
R H+GEKP++C
Sbjct: 3 SGSSGRTHSGEKPYECY 19
Score = 37.9 bits (89), Expect = 5e-04
Identities = 14/63 (22%), Positives = 20/63 (31%), Gaps = 7/63 (11%)
Query: 224 KDCGLEFGTQDILVKHINNDHIHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRR-HTGE 282
C F + HI N F C C + + L VH+R+ H+
Sbjct: 19 YICHARFTQSGTMKMHILQ-KHTENVAKFHC--PHC---DTVIARKSDLGVHLRKQHSYS 72
Query: 283 KPH 285
P
Sbjct: 73 GPS 75
Score = 36.7 bits (86), Expect = 0.001
Identities = 8/46 (17%), Positives = 15/46 (32%), Gaps = 7/46 (15%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGE--KPHKCT 288
H+ +K + C C F + +H+ + E C
Sbjct: 9 THSGEKPYEC--YIC---HARFTQSGTMKMHILQKHTENVAKFHCP 49
Score = 34.8 bits (81), Expect = 0.006
Identities = 6/28 (21%), Positives = 10/28 (35%), Gaps = 2/28 (7%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKTVH 392
+ C +C S L H++ H
Sbjct: 44 AKFHC--PHCDTVIARKSDLGVHLRKQH 69
Score = 33.3 bits (77), Expect = 0.021
Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKT 390
KPY C C R+T +++ HI
Sbjct: 14 KPYECYI--CHARFTQSGTMKMHILQ 37
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 3e-04
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCT 288
++ C +C K F L+ H R HTGEKP +
Sbjct: 6 SGTGERPHKC--NEC---GKSFIQSAHLIQHQRIHTGEKPSGPS 44
Score = 33.2 bits (77), Expect = 0.010
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 275 HMRRHTGEKPHKC 287
TGE+PHKC
Sbjct: 3 SGSSGTGERPHKC 15
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 3e-04
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCT 288
+K + C C K F + L VH R H+G+KP +
Sbjct: 6 SGTGEKPYECS--VC---GKAFSHRQSLSVHQRIHSGKKPSGPS 44
Score = 34.4 bits (80), Expect = 0.004
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 274 VHMRRHTGEKPHKCTD 289
TGEKP++C+
Sbjct: 2 SSGSSGTGEKPYECSV 17
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 3e-04
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCT 288
+K + C +C K F L H R HTGEKP +
Sbjct: 6 SGTGEKPYKC--NEC---GKAFSQTSKLARHQRIHTGEKPSGPS 44
Score = 33.3 bits (77), Expect = 0.011
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 275 HMRRHTGEKPHKC 287
TGEKP+KC
Sbjct: 3 SGSSGTGEKPYKC 15
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 3e-04
Identities = 10/25 (40%), Positives = 11/25 (44%)
Query: 264 KPFKAQYMLVVHMRRHTGEKPHKCT 288
K F Y L H HT EKP +
Sbjct: 20 KSFSGSYRLTQHWITHTREKPSGPS 44
Score = 31.4 bits (72), Expect = 0.050
Identities = 7/24 (29%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 275 HMRRHTGEKPHKCTDL-EAFDTSS 297
GEKP++C++ ++F S
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSY 26
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 4e-04
Identities = 14/44 (31%), Positives = 17/44 (38%), Gaps = 5/44 (11%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCT 288
KK + C +C K F L H HTGEKP +
Sbjct: 6 SGTGKKPYKC--NEC---GKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 33.6 bits (78), Expect = 0.006
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 274 VHMRRHTGEKPHKC 287
TG+KP+KC
Sbjct: 2 SSGSSGTGKKPYKC 15
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 4e-04
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCT 288
+K + C +C K F+ L H R HTGEKP +
Sbjct: 6 SGTGEKPYKC--NEC---GKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 32.9 bits (76), Expect = 0.012
Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 275 HMRRHTGEKPHKCTDL-EAFDTSS 297
TGEKP+KC + + F +S
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNS 26
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.2 bits (87), Expect = 4e-04
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 5/44 (11%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCT 288
+K + C +C K F H R HTG++P +
Sbjct: 6 SGTGEKPYKC--MECG---KAFGDNSSCTQHQRLHTGQRPSGPS 44
Score = 33.3 bits (77), Expect = 0.008
Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 275 HMRRHTGEKPHKCTDL-EAFDTSS 297
TGEKP+KC + +AF +S
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNS 26
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 4e-04
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCT 288
+ ++ F C +C K F + L H+R H+ EK +
Sbjct: 6 SGSGERPFKC--NEC---GKGFGRRSHLAGHLRLHSREKSSGPS 44
Score = 30.6 bits (70), Expect = 0.091
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 275 HMRRHTGEKPHKC 287
+GE+P KC
Sbjct: 3 SGSSGSGERPFKC 15
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 4e-04
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCT 288
+K + C +C K F LV H HTGEKP +
Sbjct: 6 SGTGEKPYKC--NEC---GKVFTQNSHLVRHRGIHTGEKPSGPS 44
Score = 32.1 bits (74), Expect = 0.022
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 275 HMRRHTGEKPHKC 287
TGEKP+KC
Sbjct: 3 SGSSGTGEKPYKC 15
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 5e-04
Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 5/44 (11%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCT 288
+K + C +C K F L H R HTG KP +
Sbjct: 6 SGTGEKPYKC--NEC---GKVFTQNSHLARHRRVHTGGKPSGPS 44
Score = 32.1 bits (74), Expect = 0.022
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 275 HMRRHTGEKPHKC 287
TGEKP+KC
Sbjct: 3 SGSSGTGEKPYKC 15
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 5e-04
Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 5/44 (11%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCT 288
+K + C +C K F L H HTGEKP +
Sbjct: 6 SGTGEKPYKC--NEC---GKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 32.1 bits (74), Expect = 0.021
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 275 HMRRHTGEKPHKC 287
TGEKP+KC
Sbjct: 3 SGSSGTGEKPYKC 15
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 36.7 bits (86), Expect = 5e-04
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 5/40 (12%)
Query: 246 HANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPH 285
+K + C E C F+ L H+R HTG P
Sbjct: 6 SGGEKPYPC--EIC---GTRFRHLQTLKSHLRIHTGSGPS 40
Score = 31.7 bits (73), Expect = 0.031
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKT 390
KPY C C R+ +L+ H++
Sbjct: 10 KPYPCEI--CGTRFRHLQTLKSHLRI 33
Score = 31.3 bits (72), Expect = 0.047
Identities = 5/14 (35%), Positives = 6/14 (42%)
Query: 275 HMRRHTGEKPHKCT 288
GEKP+ C
Sbjct: 2 SSGSSGGEKPYPCE 15
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 6e-04
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 5/44 (11%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCT 288
+K + C C K F + L H HTG+KP +
Sbjct: 6 SGTGEKPYEC--NQC---GKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 32.1 bits (74), Expect = 0.022
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 275 HMRRHTGEKPHKC 287
TGEKP++C
Sbjct: 3 SGSSGTGEKPYEC 15
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 36.7 bits (86), Expect = 6e-04
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 264 KPFKAQYMLVVHMRRHTGEKPHKC 287
K F + L+ H R H GE
Sbjct: 18 KAFNRKDQLISHQRTHAGESGPSS 41
Score = 29.0 bits (66), Expect = 0.25
Identities = 6/22 (27%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 277 RRHTGEKPHKCTDL-EAFDTSS 297
+GE P++C++ +AF+
Sbjct: 3 SGSSGENPYECSECGKAFNRKD 24
Score = 25.2 bits (56), Expect = 6.1
Identities = 9/26 (34%), Positives = 11/26 (42%), Gaps = 2/26 (7%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKT 390
PY C E C K + L H +T
Sbjct: 9 NPYECSE--CGKAFNRKDQLISHQRT 32
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.4 bits (85), Expect = 7e-04
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCT 288
+ +K F C E+C K F L H R HTGEKP +
Sbjct: 6 SGSGEKPFQC--EEC---GKRFTQNSHLHSHQRVHTGEKPSGPS 44
Score = 32.1 bits (74), Expect = 0.023
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 275 HMRRHTGEKPHKC 287
+GEKP +C
Sbjct: 3 SGSSGSGEKPFQC 15
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 36.4 bits (85), Expect = 7e-04
Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 5/44 (11%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCT 288
++ C DC K F + H R HTGEKP +
Sbjct: 6 SGHGERGHRC--SDCG---KFFLQASNFIQHRRIHTGEKPSGPS 44
Score = 33.7 bits (78), Expect = 0.007
Identities = 7/24 (29%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 275 HMRRHTGEKPHKCTDL-EAFDTSS 297
GE+ H+C+D + F +S
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQAS 26
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.0 bits (84), Expect = 0.001
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCT 288
+K + C+ C K F + L H + HTGEKP +
Sbjct: 6 SGTGEKPYECK--VC---SKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 32.1 bits (74), Expect = 0.024
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 275 HMRRHTGEKPHKC 287
TGEKP++C
Sbjct: 3 SGSSGTGEKPYEC 15
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 36.0 bits (84), Expect = 0.001
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCT 288
++ KS C +C + F + L H R HTGEKP +
Sbjct: 6 SGSSTKSHQC--HEC---GRGFTLKSHLNQHQRIHTGEKPSGPS 44
Score = 31.7 bits (73), Expect = 0.038
Identities = 3/15 (20%), Positives = 6/15 (40%)
Query: 275 HMRRHTGEKPHKCTD 289
+ K H+C +
Sbjct: 3 SGSSGSSTKSHQCHE 17
Score = 25.6 bits (57), Expect = 4.5
Identities = 8/23 (34%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKH 387
K + C E C + +T S L +H
Sbjct: 11 KSHQCHE--CGRGFTLKSHLNQH 31
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 35.4 bits (82), Expect = 0.001
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 249 KKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEK 283
KK IC + C K + L H+R HTGE+
Sbjct: 6 KKQHICHIQGC---GKVYGKTSHLRAHLRWHTGER 37
Score = 34.3 bits (79), Expect = 0.004
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 359 LSRPKLKPYVCGEENCTKRYTDPSSLRKHIKT 390
+ K K ++C + C K Y S LR H++
Sbjct: 1 MDPGKKKQHICHIQGCGKVYGKTSHLRAHLRW 32
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 35.6 bits (83), Expect = 0.001
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCT 288
+ +KS C ++C K F L +H R H GEK +
Sbjct: 6 SGSGEKSHTC--DEC---GKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 32.2 bits (74), Expect = 0.021
Identities = 5/13 (38%), Positives = 6/13 (46%)
Query: 275 HMRRHTGEKPHKC 287
+GEK H C
Sbjct: 3 SGSSGSGEKSHTC 15
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 34.9 bits (81), Expect = 0.002
Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
Query: 250 KSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEK 283
+ F+C W C K F L H R HTGEK
Sbjct: 1 RPFMCTWSYC---GKRFTRSDELQRHKRTHTGEK 31
Score = 30.7 bits (70), Expect = 0.063
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKT 390
+P++C C KR+T L++H +T
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRT 26
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 35.2 bits (82), Expect = 0.002
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 264 KPFKAQYMLVVHMRRHTGEKPHKC 287
K F + LV H + H+G+
Sbjct: 20 KVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 30.2 bits (69), Expect = 0.11
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 275 HMRRHTGEKPHKCTD 289
TGE P++C +
Sbjct: 3 SGSSGTGENPYECCE 17
Score = 25.9 bits (58), Expect = 4.1
Identities = 10/26 (38%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKT 390
PY C E C K ++ L H KT
Sbjct: 11 NPYECCE--CGKVFSRKDQLVSHQKT 34
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 0.002
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 5/43 (11%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKC 287
+ KK + C ++C K F L H R HTGE+
Sbjct: 6 SGSGKKPYEC--KEC---RKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 30.6 bits (70), Expect = 0.091
Identities = 4/13 (30%), Positives = 8/13 (61%)
Query: 275 HMRRHTGEKPHKC 287
+G+KP++C
Sbjct: 3 SGSSGSGKKPYEC 15
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 35.2 bits (82), Expect = 0.002
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 6/45 (13%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRR-HTGEKPHKCT 288
KK + C +C K F L+ H R HTGEKP +
Sbjct: 6 SGTGKKPYEC--IECG---KAFIQNTSLIRHWRYYHTGEKPSGPS 45
Score = 32.2 bits (74), Expect = 0.022
Identities = 7/24 (29%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 275 HMRRHTGEKPHKCTDL-EAFDTSS 297
TG+KP++C + +AF ++
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNT 26
Score = 30.2 bits (69), Expect = 0.12
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKTVH 392
KPY C E C K + +SL +H + H
Sbjct: 11 KPYECIE--CGKAFIQNTSLIRHWRYYH 36
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 35.8 bits (83), Expect = 0.002
Identities = 8/42 (19%), Positives = 11/42 (26%), Gaps = 8/42 (19%)
Query: 250 KSFICRWEDCTRDEKPFKAQYMLVVHMRRHT---GEKPHKCT 288
C E C + + L H R+H C
Sbjct: 6 SGLQC--EIC---GFTCRQKASLNWHQRKHAETVAALRFPCE 42
Score = 35.1 bits (81), Expect = 0.005
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKTVHAPASLNP 399
+ C E C KR+ P S+ H H L P
Sbjct: 37 LRFPC--EFCGKRFEKPDSVAAHRSKSHPALLLAP 69
Score = 33.9 bits (78), Expect = 0.013
Identities = 13/65 (20%), Positives = 17/65 (26%), Gaps = 11/65 (16%)
Query: 226 CGLEFGTQDILVKHINNDHIHANK---KSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGE 282
CG + L H HA F C E C K F+ + H +
Sbjct: 13 CGFTCRQKASLNWHQR---KHAETVAALRFPC--EFC---GKRFEKPDSVAAHRSKSHPA 64
Query: 283 KPHKC 287
Sbjct: 65 LLLAP 69
Score = 29.7 bits (67), Expect = 0.43
Identities = 5/26 (19%), Positives = 7/26 (26%), Gaps = 2/26 (7%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKT 390
C C +SL H +
Sbjct: 6 SGLQCEI--CGFTCRQKASLNWHQRK 29
Score = 28.9 bits (65), Expect = 0.82
Identities = 2/10 (20%), Positives = 4/10 (40%)
Query: 279 HTGEKPHKCT 288
+G +C
Sbjct: 2 SSGSSGLQCE 11
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 34.6 bits (80), Expect = 0.003
Identities = 9/41 (21%), Positives = 14/41 (34%), Gaps = 5/41 (12%)
Query: 246 HANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHK 286
+ ++C C K F + L VH R + P
Sbjct: 6 SGGETPYLC--GQCG---KSFTQRGSLAVHQRSCSQSGPSS 41
Score = 29.9 bits (68), Expect = 0.13
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKH 387
PY+CG+ C K +T SL H
Sbjct: 10 TPYLCGQ--CGKSFTQRGSLAVH 30
Score = 27.2 bits (61), Expect = 1.3
Identities = 4/15 (26%), Positives = 5/15 (33%)
Query: 275 HMRRHTGEKPHKCTD 289
GE P+ C
Sbjct: 2 SSGSSGGETPYLCGQ 16
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 34.5 bits (80), Expect = 0.003
Identities = 6/24 (25%), Positives = 7/24 (29%)
Query: 264 KPFKAQYMLVVHMRRHTGEKPHKC 287
F L H+R H P
Sbjct: 20 MNFSWSCSLFKHLRSHERTDPSGP 43
Score = 33.7 bits (78), Expect = 0.006
Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKT 390
KP+ C E C ++ SL KH+++
Sbjct: 11 KPFQCKE--CGMNFSWSCSLFKHLRS 34
Score = 31.4 bits (72), Expect = 0.039
Identities = 6/14 (42%), Positives = 7/14 (50%)
Query: 275 HMRRHTGEKPHKCT 288
TGEKP +C
Sbjct: 3 SGSSGTGEKPFQCK 16
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 33.7 bits (78), Expect = 0.006
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPH 285
+K + C + C K F + L+VH+R HTG P
Sbjct: 5 SSGGEKPYRC--DQC---GKAFSQKGSLIVHIRVHTGSGPS 40
Score = 32.5 bits (75), Expect = 0.014
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 275 HMRRHTGEKPHKC 287
GEKP++C
Sbjct: 2 SSGSSGGEKPYRC 14
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 34.5 bits (80), Expect = 0.007
Identities = 5/47 (10%), Positives = 12/47 (25%), Gaps = 7/47 (14%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMR--RHTGEKPHKCTD 289
+ ++ C + C + + H K + C
Sbjct: 4 TKEGEHTYRC--KVC---SRVYTHISNFCRHYVTSHKRNVKVYPCPF 45
Score = 34.1 bits (79), Expect = 0.009
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKTVH 392
Y C C++ YT S+ +H T H
Sbjct: 9 HTYRCKV--CSRVYTHISNFCRHYVTSH 34
Score = 33.7 bits (78), Expect = 0.010
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKTVH 392
K Y C C K +T ++ H+K +H
Sbjct: 39 KVYPCPF--CFKEFTRKDNMTAHVKIIH 64
Score = 30.2 bits (69), Expect = 0.19
Identities = 3/13 (23%), Positives = 5/13 (38%)
Query: 277 RRHTGEKPHKCTD 289
GE ++C
Sbjct: 3 FTKEGEHTYRCKV 15
Score = 29.1 bits (66), Expect = 0.48
Identities = 11/58 (18%), Positives = 18/58 (31%), Gaps = 6/58 (10%)
Query: 224 KDCGLEFGTQDILVKHINNDHIHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTG 281
K C + +H H N K + C C K F + + H++
Sbjct: 14 KVCSRVYTHISNFCRHYVTSH-KRNVKVYPC--PFC---FKEFTRKDNMTAHVKIIHK 65
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 33.3 bits (77), Expect = 0.009
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 275 HMRRHTGEKPHKC 287
GEKP+KC
Sbjct: 2 SSGSSGGEKPYKC 14
Score = 32.9 bits (76), Expect = 0.013
Identities = 11/32 (34%), Positives = 13/32 (40%), Gaps = 9/32 (28%)
Query: 263 EKPFK--------AQYM-LVVHMRRHTGEKPH 285
EKP+K Q L H+ HTG P
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 29.8 bits (68), Expect = 0.16
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKT 390
KPY C C R+ + LR H+
Sbjct: 10 KPYKCET--CGARFVQVAHLRAHVLI 33
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 32.6 bits (75), Expect = 0.017
Identities = 3/13 (23%), Positives = 4/13 (30%)
Query: 275 HMRRHTGEKPHKC 287
T K + C
Sbjct: 3 SGSSGTDSKSYNC 15
Score = 27.9 bits (63), Expect = 0.80
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 5/43 (11%)
Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKC 287
+ KS+ C +C K F + L H + HT +
Sbjct: 6 SGTDSKSYNC--NEC---GKAFTRIFHLTRHQKIHTRKSGPSS 43
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 31.9 bits (73), Expect = 0.021
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 275 HMRRHTGEKPHKCTD 289
R TG KP +C D
Sbjct: 2 STRGSTGIKPFQCPD 16
Score = 25.4 bits (56), Expect = 4.6
Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKT 390
KP+ C +C + ++ L H K
Sbjct: 10 KPFQC--PDCDRSFSRSDHLALHRKR 33
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
classical zinc finger, transcription; NMR {Homo sapiens}
Length = 30
Score = 31.6 bits (71), Expect = 0.024
Identities = 10/27 (37%), Positives = 20/27 (74%), Gaps = 2/27 (7%)
Query: 364 LKPYVCGEENCTKRYTDPSSLRKHIKT 390
+KPYVC +C +++ DP +L++H++
Sbjct: 1 MKPYVCI--HCQRQFADPGALQRHVRI 25
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 31.0 bits (71), Expect = 0.057
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 264 KPFKAQYMLVVHMRRHTGEKPH 285
K F+ + L +H R HTG P
Sbjct: 18 KSFRQKGSLTLHERIHTGSGPS 39
Score = 27.2 bits (61), Expect = 1.5
Identities = 2/13 (15%), Positives = 8/13 (61%)
Query: 277 RRHTGEKPHKCTD 289
+G++ ++C +
Sbjct: 3 SGSSGQRVYECQE 15
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 31.2 bits (70), Expect = 0.068
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 8/60 (13%)
Query: 224 KDCGLEFGTQDILVKHINNDHIHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEK 283
++CG+ +L KHI H + + + C C FK + L HM+ K
Sbjct: 5 EECGIRXKKPSMLKKHI---RTHTDVRPYHC--TYC---NFSFKTKGNLTKHMKSKAHSK 56
Score = 30.5 bits (68), Expect = 0.15
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 272 LVVHMRRHTGEKPHKCTD 289
L H+R HT +P+ CT
Sbjct: 17 LKKHIRTHTDVRPYHCTY 34
Score = 29.7 bits (66), Expect = 0.28
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 367 YVCGEENCTKRYTDPSSLRKHIKT 390
Y+C E C R PS L+KHI+T
Sbjct: 2 YICEE--CGIRXKKPSMLKKHIRT 23
Score = 25.4 bits (55), Expect = 7.2
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKT 390
+PY C C + +L KH+K+
Sbjct: 28 RPYHCTY--CNFSFKTKGNLTKHMKS 51
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 32.4 bits (73), Expect = 0.077
Identities = 16/65 (24%), Positives = 23/65 (35%), Gaps = 3/65 (4%)
Query: 224 KDCGLEFGTQDILVKHINNDHIHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEK 283
KDC + T L H+N H + + R KP K L+ + +K
Sbjct: 23 KDCSAAYDTLVELTVHMNETG-HYRDDNHETDNNNPKRWSKPRKRS--LLEMEGKEDAQK 79
Query: 284 PHKCT 288
KC
Sbjct: 80 VLKCM 84
Score = 30.1 bits (67), Expect = 0.61
Identities = 7/25 (28%), Positives = 11/25 (44%), Gaps = 1/25 (4%)
Query: 274 VHMRRHTGEKPHKCTDL-EAFDTSS 297
++ TG +C D A+DT
Sbjct: 9 LYGSIFTGASKFRCKDCSAAYDTLV 33
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 30.2 bits (68), Expect = 0.11
Identities = 10/40 (25%), Positives = 15/40 (37%), Gaps = 5/40 (12%)
Query: 246 HANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPH 285
A + F C C ++ F + LV H R H +
Sbjct: 7 GAGENPFKC--SKC---DRVFTQRNYLVQHERTHARKSGP 41
Score = 25.6 bits (56), Expect = 4.7
Identities = 5/15 (33%), Positives = 6/15 (40%)
Query: 275 HMRRHTGEKPHKCTD 289
GE P KC+
Sbjct: 3 SGSSGAGENPFKCSK 17
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 30.2 bits (68), Expect = 0.12
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKT 390
K + C CTK + ++R HI+T
Sbjct: 17 KTFECLFPGCTKTFKRRYNIRSHIQT 42
Score = 27.9 bits (62), Expect = 0.80
Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 250 KSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEK 283
K+F C + C K FK +Y + H++ H ++
Sbjct: 17 KTFECLFPGC---TKTFKRRYNIRSHIQTHLEDR 47
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 30.0 bits (68), Expect = 0.13
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 5/42 (11%)
Query: 246 HANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKC 287
+ +K + C +C ++ F LV H + HT +
Sbjct: 5 SSGEKPYSC--AEC---KETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 28.4 bits (64), Expect = 0.49
Identities = 8/21 (38%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Query: 279 HTGEKPHKCTDL-EAFDTSSR 298
+GEKP+ C + E F ++R
Sbjct: 5 SSGEKPYSCAECKETFSDNNR 25
Score = 28.1 bits (63), Expect = 0.55
Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKT 390
KPY C E C + ++D + L +H K
Sbjct: 9 KPYSCAE--CKETFSDNNRLVQHQKM 32
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 30.0 bits (67), Expect = 0.24
Identities = 7/33 (21%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 272 LVVHMRRHTGEKPHKCTDL-EAFDTSSRVAARR 303
+ H G++ KC+ F S ++ R+
Sbjct: 6 SGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRRK 38
Score = 25.8 bits (56), Expect = 8.4
Identities = 8/40 (20%), Positives = 15/40 (37%), Gaps = 5/40 (12%)
Query: 246 HANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPH 285
+ +K+ +C E C K + L +G+K
Sbjct: 34 LSRRKTPMC--EKC---RKDSCQEAALNKDEGNESGKKTS 68
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 28.1 bits (63), Expect = 0.41
Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 5/34 (14%)
Query: 250 KSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEK 283
+SF+C E CTR F Q L H R HT EK
Sbjct: 1 RSFVC--EVCTR---AFARQEHLKRHYRSHTNEK 29
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 27.9 bits (61), Expect = 0.65
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 259 CTRDEKPFKAQYMLVVHMRRHTGEK 283
C K FK ++ L H+R HT EK
Sbjct: 12 CEYCNKVFKFKHSLQAHLRIHTNEK 36
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 26
Score = 27.4 bits (60), Expect = 0.94
Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKHIK 389
KPYVC E C KR+ S L HI+
Sbjct: 1 KPYVC--ERCGKRFVQSSQLANHIR 23
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 35
Score = 27.1 bits (59), Expect = 1.2
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 367 YVCGEENCTKRYTDPSSLRKHIKTVHAPA 395
YVC C K++ LR HI+ VH A
Sbjct: 8 YVCAL--CLKKFVSSIRLRSHIREVHGAA 34
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 1.5
Identities = 5/19 (26%), Positives = 11/19 (57%), Gaps = 4/19 (21%)
Query: 193 KIKR-ET--KQHSPES-PA 207
+K+ + K ++ +S PA
Sbjct: 21 ALKKLQASLKLYADDSAPA 39
>3ax1_A Serrate RNA effector molecule; miRNA processing, protein binding;
2.74A {Arabidopsis thaliana}
Length = 358
Score = 30.0 bits (66), Expect = 1.6
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 367 YVCGEENCTKRYTDPSSLRKHIKTVHA 393
Y CG + CTK + + KH+K H
Sbjct: 305 YGCGAKGCTKLFHAAEFVYKHLKLKHT 331
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 26.5 bits (58), Expect = 1.9
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKT 390
+PY C C K + L +H K+
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKKS 27
>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding
protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB:
2ab7_A
Length = 29
Score = 26.2 bits (57), Expect = 2.4
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 367 YVCGEENCTKRYTDPSSLRKHIKTVH 392
YVC ENC + + D L +H K +H
Sbjct: 3 YVCHFENCGRSFNDRRKLNRH-KKIH 27
>2h78_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC6014, pseudomonas
aeruginosa PA01, PSI-2, structural genomics; HET: PG4;
2.20A {Pseudomonas aeruginosa} PDB: 3cum_A 3obb_A*
3q3c_A*
Length = 302
Score = 29.1 bits (66), Expect = 3.0
Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 3/51 (5%)
Query: 178 ADTSSMGGGASWKPMKIKRETKQHSPESPAGDKYEPGDFVETNCHWKDCGL 228
A+ G +W +++ +PA Y G + KD GL
Sbjct: 205 AEIMRRSSGGNW-ALEVYNPWPGVMENAPASRDYSGGFMAQL--MAKDLGL 252
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Length = 37
Score = 25.9 bits (56), Expect = 3.3
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 374 CTKRYTDPSSLRKHIKTVHAP 394
C K+Y+D +L KHI+ H P
Sbjct: 15 CKKKYSDVKNLIKHIRDAHDP 35
>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type
zinc finger, KIAA0530, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: g.37.1.1
Length = 73
Score = 26.5 bits (57), Expect = 5.2
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKTVH 392
+PY C + C +T +L H + VH
Sbjct: 26 RPYRCVHQGCFAAFTIQQNLILHYQAVH 53
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC),
C2H2, APO metal-binding, nucleus, phosphoprotein,
transcription, TRAN regulation; 1.80A {Homo sapiens}
Length = 48
Score = 25.1 bits (54), Expect = 9.4
Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKTVH 392
KPY C + C KRY + L H H
Sbjct: 6 KPYAC--DICGKRYKNRPGLSYHYAHSH 31
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.130 0.385
Gapped
Lambda K H
0.267 0.0570 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,141,885
Number of extensions: 409339
Number of successful extensions: 1281
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1209
Number of HSP's successfully gapped: 426
Length of query: 486
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 389
Effective length of database: 3,993,456
Effective search space: 1553454384
Effective search space used: 1553454384
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.9 bits)