RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16294
         (486 letters)



>d2glia1 g.37.1.1 (A:103-134) Five-finger GLI1 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 32

 Score = 72.2 bits (177), Expect = 5e-17
 Identities = 16/32 (50%), Positives = 22/32 (68%)

Query: 218 ETNCHWKDCGLEFGTQDILVKHINNDHIHANK 249
           ET+C W  C  EF +Q+ LV HIN++HIH  +
Sbjct: 1   ETDCRWDGCSQEFDSQEQLVHHINSEHIHGER 32



 Score = 25.2 bits (55), Expect = 1.8
 Identities = 9/23 (39%), Positives = 15/23 (65%), Gaps = 3/23 (13%)

Query: 254 CRWEDCTRDEKPFKAQYMLVVHM 276
           CRW+ C+++   F +Q  LV H+
Sbjct: 4   CRWDGCSQE---FDSQEQLVHHI 23


>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 33

 Score = 71.3 bits (175), Expect = 8e-17
 Identities = 24/33 (72%), Positives = 28/33 (84%)

Query: 250 KSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGE 282
           K F+C W  C+R+ +PFKAQYMLVVHMRRHTGE
Sbjct: 1   KEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGE 33


>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 29

 Score = 56.4 bits (136), Expect = 2e-11
 Identities = 23/28 (82%), Positives = 24/28 (85%)

Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKTVH 392
           KPYVC    CTKRYTDPSSLRKH+KTVH
Sbjct: 1   KPYVCKLPGCTKRYTDPSSLRKHVKTVH 28


>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 36

 Score = 50.1 bits (120), Expect = 3e-09
 Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 3/37 (8%)

Query: 251 SFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKC 287
           SF C    C    K F  +  L  HM+ H+  + + C
Sbjct: 1   SFSCPEPAC---GKSFNFKKHLKEHMKLHSDTRDYIC 34



 Score = 32.4 bits (74), Expect = 0.007
 Identities = 7/24 (29%), Positives = 12/24 (50%)

Query: 367 YVCGEENCTKRYTDPSSLRKHIKT 390
           + C E  C K +     L++H+K 
Sbjct: 2   FSCPEPACGKSFNFKKHLKEHMKL 25


>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 39

 Score = 41.9 bits (99), Expect = 3e-06
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 6/40 (15%)

Query: 249 KKSFICRWEDCTRDEKPFKAQYMLVVHMRR-HTGEKPHKC 287
            K +IC  + C    K F     L  H+++ HT E+PHKC
Sbjct: 3   GKPYIC--QSC---GKGFSRPDHLNGHIKQVHTSERPHKC 37



 Score = 37.7 bits (88), Expect = 9e-05
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%)

Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKTVH 392
           KPY+C    C K ++ P  L  HIK VH
Sbjct: 4   KPYICQS--CGKGFSRPDHLNGHIKQVH 29


>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 47

 Score = 38.8 bits (90), Expect = 4e-05
 Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 7/48 (14%)

Query: 236 LVKHINNDHIHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEK 283
           + K++         K+F C +  C    K FK +Y +  H++ H  ++
Sbjct: 7   IDKYV----KEMPDKTFECLFPGC---TKTFKRRYNIRSHIQTHLEDR 47



 Score = 29.5 bits (66), Expect = 0.070
 Identities = 9/26 (34%), Positives = 14/26 (53%)

Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKT 390
           K + C    CTK +    ++R HI+T
Sbjct: 17  KTFECLFPGCTKTFKRRYNIRSHIQT 42



 Score = 26.4 bits (58), Expect = 0.90
 Identities = 2/18 (11%), Positives = 5/18 (27%)

Query: 275 HMRRHTGEKPHKCTDLEA 292
              +   +K  +C     
Sbjct: 9   KYVKEMPDKTFECLFPGC 26


>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 31

 Score = 38.1 bits (89), Expect = 5e-05
 Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 3/34 (8%)

Query: 250 KSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEK 283
           + F+C W  C    K F     L  H R HTGEK
Sbjct: 1   RPFMCTWSYC---GKRFTRSDELQRHKRTHTGEK 31



 Score = 36.1 bits (84), Expect = 3e-04
 Identities = 9/26 (34%), Positives = 16/26 (61%)

Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKT 390
           +P++C    C KR+T    L++H +T
Sbjct: 1   RPFMCTWSYCGKRFTRSDELQRHKRT 26


>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 28

 Score = 37.3 bits (87), Expect = 8e-05
 Identities = 10/26 (38%), Positives = 17/26 (65%)

Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKT 390
           +PYVC  + C K++   ++L+ HI T
Sbjct: 1   RPYVCPFDGCNKKFAQSTNLKSHILT 26



 Score = 30.4 bits (69), Expect = 0.025
 Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 3/31 (9%)

Query: 250 KSFICRWEDCTRDEKPFKAQYMLVVHMRRHT 280
           + ++C ++ C    K F     L  H+  H 
Sbjct: 1   RPYVCPFDGCN---KKFAQSTNLKSHILTHA 28


>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 30

 Score = 36.5 bits (85), Expect = 2e-04
 Identities = 9/26 (34%), Positives = 16/26 (61%)

Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKT 390
           KP+ C  E C K Y+   +L+ H+++
Sbjct: 1   KPHKCTFEGCRKSYSRLENLKTHLRS 26



 Score = 34.6 bits (80), Expect = 7e-04
 Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 3/33 (9%)

Query: 250 KSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGE 282
           K   C +E C    K +     L  H+R HTGE
Sbjct: 1   KPHKCTFEGC---RKSYSRLENLKTHLRSHTGE 30


>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 32

 Score = 36.2 bits (84), Expect = 2e-04
 Identities = 8/26 (30%), Positives = 12/26 (46%)

Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKT 390
           +PY C    C K +     L +H K+
Sbjct: 2   RPYSCDHPGCDKAFVRNHDLIRHKKS 27



 Score = 31.5 bits (72), Expect = 0.012
 Identities = 7/33 (21%), Positives = 14/33 (42%), Gaps = 3/33 (9%)

Query: 250 KSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGE 282
           + + C    C   +K F   + L+ H + H  +
Sbjct: 2   RPYSCDHPGC---DKAFVRNHDLIRHKKSHQEK 31


>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 29

 Score = 35.8 bits (83), Expect = 4e-04
 Identities = 9/26 (34%), Positives = 17/26 (65%)

Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKT 390
           +PY C  E+C +R++  + L +HI+ 
Sbjct: 1   RPYACPVESCDRRFSRSADLTRHIRI 26



 Score = 31.9 bits (73), Expect = 0.008
 Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 3/32 (9%)

Query: 250 KSFICRWEDCTRDEKPFKAQYMLVVHMRRHTG 281
           + + C  E C   ++ F     L  H+R HTG
Sbjct: 1   RPYACPVESC---DRRFSRSADLTRHIRIHTG 29


>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 33

 Score = 34.5 bits (80), Expect = 0.001
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 5/38 (13%)

Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGE 282
           IH+ +K + C   +C    K F    +LV H R HTGE
Sbjct: 1   IHSGEKPYGC--VEC---GKAFSRSSILVQHQRVHTGE 33



 Score = 33.0 bits (76), Expect = 0.003
 Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 2/26 (7%)

Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKT 390
           KPY C E  C K ++  S L +H + 
Sbjct: 6   KPYGCVE--CGKAFSRSSILVQHQRV 29



 Score = 28.4 bits (64), Expect = 0.14
 Identities = 6/11 (54%), Positives = 9/11 (81%)

Query: 279 HTGEKPHKCTD 289
           H+GEKP+ C +
Sbjct: 2   HSGEKPYGCVE 12


>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 30

 Score = 34.3 bits (79), Expect = 0.001
 Identities = 10/26 (38%), Positives = 16/26 (61%)

Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKT 390
           KP+ C  E C KR++   +LR H++ 
Sbjct: 1   KPFQCTFEGCGKRFSLDFNLRTHVRI 26



 Score = 31.2 bits (71), Expect = 0.014
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 3/33 (9%)

Query: 250 KSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGE 282
           K F C +E C    K F   + L  H+R HTG+
Sbjct: 1   KPFQCTFEGC---GKRFSLDFNLRTHVRIHTGD 30


>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 36

 Score = 34.2 bits (79), Expect = 0.001
 Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 2/28 (7%)

Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKTVH 392
           KPY C    C  R+T   +++ HI   H
Sbjct: 7   KPYECYI--CHARFTQSGTMKMHILQKH 32



 Score = 30.3 bits (69), Expect = 0.034
 Identities = 9/22 (40%), Positives = 12/22 (54%), Gaps = 1/22 (4%)

Query: 277 RRHTGEKPHKCTDLE-AFDTSS 297
           R H+GEKP++C      F  S 
Sbjct: 1   RTHSGEKPYECYICHARFTQSG 22



 Score = 26.5 bits (59), Expect = 0.63
 Identities = 7/39 (17%), Positives = 14/39 (35%), Gaps = 5/39 (12%)

Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEK 283
            H+ +K + C    C      F     + +H+ +   E 
Sbjct: 2   THSGEKPYEC--YIC---HARFTQSGTMKMHILQKHTEN 35


>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 37

 Score = 33.9 bits (78), Expect = 0.002
 Identities = 9/24 (37%), Positives = 12/24 (50%), Gaps = 1/24 (4%)

Query: 275 HMRRHTGEKPHKCTDLE-AFDTSS 297
             R  TG KP +C D + +F  S 
Sbjct: 2   STRGSTGIKPFQCPDCDRSFSRSD 25



 Score = 28.2 bits (63), Expect = 0.17
 Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 2/26 (7%)

Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKT 390
           KP+ C   +C + ++    L  H K 
Sbjct: 10  KPFQC--PDCDRSFSRSDHLALHRKR 33



 Score = 25.5 bits (56), Expect = 1.7
 Identities = 8/37 (21%), Positives = 12/37 (32%), Gaps = 5/37 (13%)

Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTG 281
                K F C        ++ F     L +H +RH  
Sbjct: 5   GSTGIKPFQCPD-----CDRSFSRSDHLALHRKRHML 36


>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
           protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 38

 Score = 33.6 bits (77), Expect = 0.003
 Identities = 5/24 (20%), Positives = 10/24 (41%), Gaps = 1/24 (4%)

Query: 275 HMRRHTGEKPHKCTDLE-AFDTSS 297
              +    + +KC +   +F  SS
Sbjct: 3   SEWQQRERRRYKCDECGKSFSHSS 26



 Score = 30.9 bits (70), Expect = 0.021
 Identities = 10/38 (26%), Positives = 13/38 (34%), Gaps = 5/38 (13%)

Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGE 282
               ++ + C         K F     L  H R HTGE
Sbjct: 6   QQRERRRYKCDE-----CGKSFSHSSDLSKHRRTHTGE 38



 Score = 25.5 bits (56), Expect = 1.6
 Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 2/26 (7%)

Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKT 390
           + Y C E  C K ++  S L KH +T
Sbjct: 11  RRYKCDE--CGKSFSHSSDLSKHRRT 34


>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 29

 Score = 32.7 bits (75), Expect = 0.004
 Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 2/26 (7%)

Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKT 390
           K + C E  C KR+     L KHIKT
Sbjct: 1   KKFACPE--CPKRFMRSDHLSKHIKT 24



 Score = 31.9 bits (73), Expect = 0.006
 Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 5/34 (14%)

Query: 250 KSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEK 283
           K F C   +C    K F     L  H++ H  +K
Sbjct: 1   KKFAC--PEC---PKRFMRSDHLSKHIKTHQNKK 29


>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 27

 Score = 32.7 bits (74), Expect = 0.004
 Identities = 13/26 (50%), Positives = 17/26 (65%)

Query: 258 DCTRDEKPFKAQYMLVVHMRRHTGEK 283
           +C    K F ++Y L VH R+HTGEK
Sbjct: 2   ECPTCHKKFLSKYYLKVHNRKHTGEK 27


>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
           Saccharomyces cerevisiae sequence}
          Length = 29

 Score = 32.6 bits (75), Expect = 0.005
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 5/34 (14%)

Query: 250 KSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEK 283
           +SF+C  E C    + F  Q  L  H R HT EK
Sbjct: 1   RSFVC--EVC---TRAFARQEHLKRHYRSHTNEK 29



 Score = 32.2 bits (74), Expect = 0.007
 Identities = 6/26 (23%), Positives = 14/26 (53%), Gaps = 2/26 (7%)

Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKT 390
           + +VC    CT+ +     L++H ++
Sbjct: 1   RSFVCEV--CTRAFARQEHLKRHYRS 24


>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 28

 Score = 32.2 bits (74), Expect = 0.006
 Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 2/26 (7%)

Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKT 390
           KP+ C    C + ++    L  HI+T
Sbjct: 2   KPFQCRI--CMRNFSRSDHLTTHIRT 25



 Score = 26.0 bits (58), Expect = 0.79
 Identities = 11/32 (34%), Positives = 13/32 (40%), Gaps = 5/32 (15%)

Query: 250 KSFICRWEDCTRDEKPFKAQYMLVVHMRRHTG 281
           K F C    C    + F     L  H+R HTG
Sbjct: 2   KPFQC--RIC---MRNFSRSDHLTTHIRTHTG 28


>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 36

 Score = 32.3 bits (74), Expect = 0.006
 Identities = 10/28 (35%), Positives = 11/28 (39%), Gaps = 2/28 (7%)

Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKTVH 392
           KPY C    C K +     L  H K  H
Sbjct: 7   KPYACSH--CDKTFRQKQLLDMHFKRYH 32



 Score = 30.0 bits (68), Expect = 0.035
 Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 5/39 (12%)

Query: 245 IHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEK 283
            H  +K + C    C   +K F+ + +L +H +R+    
Sbjct: 2   THTGEKPYAC--SHC---DKTFRQKQLLDMHFKRYHDPN 35



 Score = 29.3 bits (66), Expect = 0.077
 Identities = 9/22 (40%), Positives = 12/22 (54%), Gaps = 1/22 (4%)

Query: 277 RRHTGEKPHKCTDLE-AFDTSS 297
           R HTGEKP+ C+  +  F    
Sbjct: 1   RTHTGEKPYACSHCDKTFRQKQ 22


>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 31

 Score = 31.8 bits (72), Expect = 0.009
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKTVH 392
           KPY+C  E C+K +++ S   KH    H
Sbjct: 1   KPYMCEHEGCSKAFSNASDRAKHQNRTH 28


>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA
           {Xenopus laevis [TaxId: 8355]}
          Length = 29

 Score = 31.6 bits (71), Expect = 0.010
 Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 1/28 (3%)

Query: 366 PYVCGEENCTKRYTDPSSLRKHIKTVHA 393
           PY C  E C KR++ PS L++H K VHA
Sbjct: 3   PYECPHEGCDKRFSLPSRLKRHEK-VHA 29


>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 53

 Score = 31.6 bits (71), Expect = 0.019
 Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 8/55 (14%)

Query: 225 DCGLEFGTQDILVKHINNDHIHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRH 279
            CG  F  +    +H++           +C         K FK ++ LV HM+ H
Sbjct: 7   QCGKSFTHKSQRDRHMSMHLGLRPYGCGVC--------GKKFKMKHHLVGHMKIH 53



 Score = 28.5 bits (63), Expect = 0.25
 Identities = 8/28 (28%), Positives = 11/28 (39%), Gaps = 3/28 (10%)

Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKTVH 392
           K Y C    C K +T  S   +H+    
Sbjct: 2   KLYPC---QCGKSFTHKSQRDRHMSMHL 26



 Score = 24.6 bits (53), Expect = 6.1
 Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 2/25 (8%)

Query: 366 PYVCGEENCTKRYTDPSSLRKHIKT 390
           PY CG   C K++     L  H+K 
Sbjct: 30  PYGCGV--CGKKFKMKHHLVGHMKI 52



 Score = 24.3 bits (52), Expect = 6.4
 Identities = 12/49 (24%), Positives = 16/49 (32%), Gaps = 7/49 (14%)

Query: 250 KSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKPHKCTDLE-AFDTSS 297
           K + C    C    K F  +     HM  H G +P+ C      F    
Sbjct: 2   KLYPC---QC---GKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKH 44


>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA
           {Xenopus laevis [TaxId: 8355]}
          Length = 31

 Score = 28.8 bits (64), Expect = 0.100
 Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 3/33 (9%)

Query: 250 KSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGE 282
           K +IC + DC      +   + L  H+ +HTGE
Sbjct: 2   KRYICSFADCG---AAYNKNWKLQAHLSKHTGE 31


>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 26

 Score = 27.9 bits (63), Expect = 0.18
 Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 2/26 (7%)

Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKT 390
           KPY C E  C K ++  S L  H + 
Sbjct: 1   KPYKCLE--CGKAFSQNSGLINHQRI 24


>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 28

 Score = 27.1 bits (60), Expect = 0.33
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 2/24 (8%)

Query: 367 YVCGEENCTKRYTDPSSLRKHIKT 390
           Y+C E  C  R   PS L+KHI+T
Sbjct: 2   YICEE--CGIRAKKPSMLKKHIRT 23


>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 28

 Score = 26.9 bits (59), Expect = 0.52
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)

Query: 369 CGEENCTKRYTDPSSLRKHIKTVHAP 394
           C  + CTK + D S++RKH+ T H P
Sbjct: 4   CPHKGCTKMFRDNSAMRKHLHT-HGP 28


>d2j0td1 b.40.3.1 (D:1-124) TIMP-1 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 124

 Score = 28.4 bits (63), Expect = 0.74
 Identities = 6/47 (12%), Positives = 18/47 (38%)

Query: 218 ETNCHWKDCGLEFGTQDILVKHINNDHIHANKKSFICRWEDCTRDEK 264
           E+ C +         + ++   + +  +H    SF+  W   +  ++
Sbjct: 67  ESVCGYFHRSHNRSEEFLIAGKLQDGLLHITTCSFVAPWNSLSLAQR 113


>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 35

 Score = 26.3 bits (58), Expect = 0.87
 Identities = 5/29 (17%), Positives = 8/29 (27%), Gaps = 3/29 (10%)

Query: 254 CRWEDCTRDEKPFKAQYMLVVHMRRHTGE 282
                C      F  +     H++ HT  
Sbjct: 8   FVCRIC---LSAFTTKANCARHLKVHTDT 33



 Score = 25.9 bits (57), Expect = 1.3
 Identities = 7/26 (26%), Positives = 14/26 (53%), Gaps = 2/26 (7%)

Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKT 390
           +P+VC    C   +T  ++  +H+K 
Sbjct: 6   RPFVCRI--CLSAFTTKANCARHLKV 29



 Score = 23.9 bits (52), Expect = 6.6
 Identities = 3/11 (27%), Positives = 6/11 (54%)

Query: 279 HTGEKPHKCTD 289
            +G++P  C  
Sbjct: 2   SSGKRPFVCRI 12


>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 29

 Score = 25.8 bits (56), Expect = 1.3
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 9/29 (31%)

Query: 263 EKPFKAQY---------MLVVHMRRHTGE 282
           E+PFK Q           L VH+R HTG+
Sbjct: 1   ERPFKCQICPYASRNSSQLTVHLRSHTGD 29


>d1s4bp_ d.92.1.5 (P:) Neurolysin (endopeptidase 24.16, thimet
           oligopeptidase) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 654

 Score = 28.6 bits (63), Expect = 2.0
 Identities = 9/47 (19%), Positives = 14/47 (29%)

Query: 112 LSAGALSPALHPSMTPHLQQLQAHLLRSGGLLPPQPPFYHPHALSPL 158
           +    +  ALH        +  A L +    +P  P    P     L
Sbjct: 532 IVLAKVDQALHTQTDADPAEEYARLCQEILGVPATPGTNMPATFGHL 578


>d1wj3a_ b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 117

 Score = 27.0 bits (58), Expect = 2.7
 Identities = 14/101 (13%), Positives = 29/101 (28%), Gaps = 2/101 (1%)

Query: 184 GGGASWKPMKIKRETKQHSPESPAGDKYEPGDFVETNCHWKDCGLEFGTQDILVKHINND 243
           G   S   + +   TK+  P  P G+        +   +W+         ++    +   
Sbjct: 1   GSSGSSGTVNVT--TKKTPPSQPPGNVVWNATDTKVLLNWEQVKAMENESEVTGYKVFYR 58

Query: 244 HIHANKKSFICRWEDCTRDEKPFKAQYMLVVHMRRHTGEKP 284
               N    +   +       P K  Y++ V      G+  
Sbjct: 59  TSSQNNVQVLNTNKTSAELVLPIKEDYIIEVKATTDGGDGT 99


>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA
           {Xenopus laevis [TaxId: 8355]}
          Length = 31

 Score = 24.6 bits (53), Expect = 3.2
 Identities = 8/28 (28%), Positives = 15/28 (53%)

Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKTVH 392
           K + C  + C  R+T  ++++KH    H
Sbjct: 1   KNFTCDSDGCDLRFTTKANMKKHFNRFH 28


>d1i1ip_ d.92.1.5 (P:) Neurolysin (endopeptidase 24.16, thimet
           oligopeptidase) {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 665

 Score = 27.8 bits (61), Expect = 3.3
 Identities = 7/47 (14%), Positives = 12/47 (25%)

Query: 112 LSAGALSPALHPSMTPHLQQLQAHLLRSGGLLPPQPPFYHPHALSPL 158
           +    +  +LH + T       A        +   P    P     L
Sbjct: 543 IVLSKVDQSLHTNATLDAASEYAKYCTEILGVAATPGTNMPATFGHL 589


>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 38

 Score = 24.8 bits (54), Expect = 3.6
 Identities = 8/25 (32%), Positives = 13/25 (52%)

Query: 365 KPYVCGEENCTKRYTDPSSLRKHIK 389
           KP++C    C +R+T+   L  H  
Sbjct: 5   KPFLCTAPGCGQRFTNEDHLAVHKH 29


>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA
           {Xenopus laevis [TaxId: 8355]}
          Length = 30

 Score = 24.2 bits (52), Expect = 4.6
 Identities = 11/26 (42%), Positives = 14/26 (53%)

Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKT 390
           KP+ C EE C K +T    L +H  T
Sbjct: 1   KPFPCKEEGCEKGFTSLHHLTRHSLT 26


>d1eyba_ b.82.1.4 (A:) Homogentisate dioxygenase {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 439

 Score = 27.2 bits (60), Expect = 5.6
 Identities = 14/65 (21%), Positives = 17/65 (26%), Gaps = 2/65 (3%)

Query: 82  HTMIRFSPNSLVNSLVNSTASSRSGGSYGHLSAGALSPALHPSMTPHLQQLQAHLLRSGG 141
            T      +    S              G    G  S  LH +MTPH          S  
Sbjct: 326 KTFRPPYYHRNCMSEFMGLIRGHYEAKQGGFLPGGGS--LHSTMTPHGPDADCFEKASKV 383

Query: 142 LLPPQ 146
            L P+
Sbjct: 384 KLAPE 388


>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 29

 Score = 23.8 bits (51), Expect = 7.0
 Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 2/29 (6%)

Query: 365 KPYVCGEENCTKRYTDPSSLRKHIKTVHA 393
           +P+ C    C+     PS+L KH+K  H 
Sbjct: 1   RPFKC--NYCSFDTKQPSNLSKHMKKFHG 27


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.130    0.385 

Gapped
Lambda     K      H
   0.267   0.0526    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,740,269
Number of extensions: 78920
Number of successful extensions: 287
Number of sequences better than 10.0: 1
Number of HSP's gapped: 282
Number of HSP's successfully gapped: 70
Length of query: 486
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 397
Effective length of database: 1,185,626
Effective search space: 470693522
Effective search space used: 470693522
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.4 bits)