BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16295
(128 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PC2|A Chain A, Solution Structure Of Human Mitochondria Fission Protein
Fis1
Length = 152
Score = 85.9 bits (211), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 56/87 (64%), Gaps = 2/87 (2%)
Query: 2 TQFNYSFCLVRSEFCADIRKGIXXXXXXXXXXXXDIDRKRDYLYYLAIGNARIKEYTKSL 61
TQF Y++CLVRS++ DIRKGI + +RDY++YLA+GN R+KEY K+L
Sbjct: 34 TQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKE--EQRDYVFYLAVGNYRLKEYEKAL 91
Query: 62 KYCRAFLAIESENSQVQHLESIVKKRM 88
KY R L E +N+Q + LE ++ K M
Sbjct: 92 KYVRGLLQTEPQNNQAKELERLIDKAM 118
>pdb|1IYG|A Chain A, Solution Structure Of Rsgi Ruh-001, A Fis1p-Like And Cgi-
135 Homologous Domain From A Mouse Cdna
Length = 133
Score = 84.7 bits (208), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 56/87 (64%), Gaps = 2/87 (2%)
Query: 2 TQFNYSFCLVRSEFCADIRKGIXXXXXXXXXXXXDIDRKRDYLYYLAIGNARIKEYTKSL 61
TQF Y++CLVRS++ DIR+GI + +RDY++YLA+GN R+KEY K+L
Sbjct: 41 TQFEYAWCLVRSKYNEDIRRGIVLLEELLPKGSKE--EQRDYVFYLAVGNYRLKEYEKAL 98
Query: 62 KYCRAFLAIESENSQVQHLESIVKKRM 88
KY R L E +N+Q + LE ++ K M
Sbjct: 99 KYVRGLLQTEPQNNQAKELERLIDKAM 125
>pdb|1NZN|A Chain A, Cytosolic Domain Of The Human Mitchondrial Fission Protein
Fis1 Adopts A Tpr Fold
Length = 126
Score = 82.0 bits (201), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 54/85 (63%), Gaps = 2/85 (2%)
Query: 2 TQFNYSFCLVRSEFCADIRKGIXXXXXXXXXXXXDIDRKRDYLYYLAIGNARIKEYTKSL 61
TQF Y++CLVR+ + DIRKGI + +RDY++YLA+GN R+KEY K+L
Sbjct: 37 TQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKE--EQRDYVFYLAVGNYRLKEYEKAL 94
Query: 62 KYCRAFLAIESENSQVQHLESIVKK 86
KY R L E +N+Q + LE ++ K
Sbjct: 95 KYVRGLLQTEPQNNQAKELERLIDK 119
>pdb|2PQN|A Chain A, Crystal Structure Of Yeast Fis1 Complexed With A Fragment
Of Yeast Mdv1
pdb|2PQR|A Chain A, Crystal Structure Of Yeast Fis1 Complexed With A Fragment
Of Yeast Caf4
pdb|2PQR|B Chain B, Crystal Structure Of Yeast Fis1 Complexed With A Fragment
Of Yeast Caf4
pdb|3UUX|A Chain A, Crystal Structure Of Yeast Fis1 In Complex With Mdv1
Fragment Containing N-Terminal Extension And Coiled Coil
Domains
pdb|3UUX|C Chain C, Crystal Structure Of Yeast Fis1 In Complex With Mdv1
Fragment Containing N-Terminal Extension And Coiled Coil
Domains
Length = 129
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 2 TQFNYSFCLVRSEFCADIRKGIXXXXXXXXXXXXDIDRKRDYLYYLAIGNARIKEYTKSL 61
++FNY++ L++S D R G+ R+R+ LYYL IG ++ EY+ +
Sbjct: 41 SRFNYAWGLIKSTDVNDERLGVKILTDIYKEAES---RRRECLYYLTIGCYKLGEYSMAK 97
Query: 62 KYCRAFLAIESENSQVQHLESIVKKRMETE 91
+Y E N QV L+S+V+ +++ E
Sbjct: 98 RYVDTLFEHERNNKQVGALKSMVEDKIQKE 127
>pdb|1Y8M|A Chain A, Solution Structure Of Yeast Mitochondria Fission Protein
Fis1
Length = 144
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 2 TQFNYSFCLVRSEFCADIRKGIXXXXXXXXXXXXDIDRKRDYLYYLAIGNARIKEYTKSL 61
++FNY++ L++S D R G+ R+R+ LYYL IG ++ EY+ +
Sbjct: 41 SRFNYAWGLIKSTDVNDERLGVKILTDIYKEAES---RRRECLYYLTIGCYKLGEYSMAK 97
Query: 62 KYCRAFLAIESENSQVQHLESIVKKRMETE 91
+Y E N QV L+S+V+ +++ E
Sbjct: 98 RYVDTLFEHERNNKQVGALKSMVEDKIQKE 127
>pdb|3O48|A Chain A, Crystal Structure Of Fission Protein Fis1 From
Saccharomyces Cerevisiae
Length = 134
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 2 TQFNYSFCLVRSEFCADIRKGIXXXXXXXXXXXXDIDRKRDYLYYLAIGNARIKEYTKSL 61
++FNY++ L++S D R G+ R+R+ LYYL IG ++ EY+ +
Sbjct: 42 SRFNYAWGLIKSTDVNDERLGVKILTDIYKEAES---RRRECLYYLTIGCYKLGEYSMAK 98
Query: 62 KYCRAFLAIESENSQVQHLESIVKKRMETE 91
+Y E N QV L+S+V+ +++ E
Sbjct: 99 RYVDTLFEHERNNKQVGALKSMVEDKIQKE 128
>pdb|3GGG|D Chain D, The Crystal Structure Of A. Aeolicus Prephenate
Dehydrogenase In Complex With Tyrosine And Nad+
pdb|3GGG|A Chain A, The Crystal Structure Of A. Aeolicus Prephenate
Dehydrogenase In Complex With Tyrosine And Nad+
pdb|3GGO|A Chain A, Crystal Structure Of Prephenate Dehydrogenase From A.
Aeolicus With Hpp And Nadh
pdb|3GGO|B Chain B, Crystal Structure Of Prephenate Dehydrogenase From A.
Aeolicus With Hpp And Nadh
pdb|3GGO|C Chain C, Crystal Structure Of Prephenate Dehydrogenase From A.
Aeolicus With Hpp And Nadh
pdb|3GGO|D Chain D, Crystal Structure Of Prephenate Dehydrogenase From A.
Aeolicus With Hpp And Nadh
pdb|3GGP|A Chain A, Crystal Structure Of Prephenate Dehydrogenase From A.
Aeolicus In Complex With Hydroxyphenyl Propionate And
Nad+
pdb|3GGP|B Chain B, Crystal Structure Of Prephenate Dehydrogenase From A.
Aeolicus In Complex With Hydroxyphenyl Propionate And
Nad+
pdb|3GGP|C Chain C, Crystal Structure Of Prephenate Dehydrogenase From A.
Aeolicus In Complex With Hydroxyphenyl Propionate And
Nad+
pdb|3GGP|D Chain D, Crystal Structure Of Prephenate Dehydrogenase From A.
Aeolicus In Complex With Hydroxyphenyl Propionate And
Nad+
pdb|3GGG|B Chain B, The Crystal Structure Of A. Aeolicus Prephenate
Dehydrogenase In Complex With Tyrosine And Nad+
pdb|3GGG|C Chain C, The Crystal Structure Of A. Aeolicus Prephenate
Dehydrogenase In Complex With Tyrosine And Nad+
Length = 314
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 54 IKEYTKSLKYCRAFLAIESENSQVQHLESIVKKRMETE 91
I+ + KSL + + + E+E V++L+ + KRME +
Sbjct: 277 IEGFEKSLNHLKELIVREAEEELVEYLKEVKIKRMEID 314
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.133 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,236,746
Number of Sequences: 62578
Number of extensions: 52484
Number of successful extensions: 92
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80
Number of HSP's gapped (non-prelim): 9
length of query: 128
length of database: 14,973,337
effective HSP length: 87
effective length of query: 41
effective length of database: 9,529,051
effective search space: 390691091
effective search space used: 390691091
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)