Query psy16295
Match_columns 128
No_of_seqs 103 out of 210
Neff 5.3
Searched_HMMs 29240
Date Fri Aug 16 17:43:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16295.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16295hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1y8m_A FIS1; mitochondria, unk 100.0 1.7E-44 5.8E-49 270.0 6.3 98 2-102 41-138 (144)
2 1pc2_A Mitochondria fission pr 100.0 1.2E-41 4.1E-46 255.9 1.8 104 2-107 34-137 (152)
3 3o48_A Mitochondria fission 1 100.0 1.6E-38 5.4E-43 235.3 12.0 90 2-94 42-131 (134)
4 1nzn_A CGI-135 protein, fissio 100.0 1.8E-38 6.1E-43 232.6 10.8 90 2-93 37-126 (126)
5 3bee_A Putative YFRE protein; 99.0 2.9E-09 1E-13 71.8 8.6 81 3-87 9-89 (93)
6 2kc7_A BFR218_protein; tetratr 98.7 1.8E-07 6.2E-12 59.7 9.2 71 1-78 1-72 (99)
7 3k9i_A BH0479 protein; putativ 98.6 2.5E-07 8.7E-12 61.5 8.7 77 3-86 30-106 (117)
8 4gco_A Protein STI-1; structur 98.6 3.7E-07 1.3E-11 62.7 9.5 70 3-79 50-119 (126)
9 2xev_A YBGF; tetratricopeptide 98.6 5.8E-07 2E-11 59.0 10.0 64 21-85 57-120 (129)
10 3rkv_A Putative peptidylprolyl 98.6 3.7E-07 1.3E-11 63.4 9.5 80 3-89 66-146 (162)
11 2xcb_A PCRH, regulatory protei 98.5 3.8E-07 1.3E-11 62.6 8.0 75 3-84 21-95 (142)
12 3upv_A Heat shock protein STI1 98.5 5.1E-07 1.8E-11 59.9 8.4 73 5-84 9-81 (126)
13 1na3_A Designed protein CTPR2; 98.5 2.1E-06 7.3E-11 53.0 10.3 75 3-84 12-86 (91)
14 1hxi_A PEX5, peroxisome target 98.5 1.6E-06 5.4E-11 58.9 10.4 76 3-85 20-95 (121)
15 2vgx_A Chaperone SYCD; alterna 98.5 7.2E-07 2.5E-11 62.6 8.6 71 4-81 25-95 (148)
16 1elw_A TPR1-domain of HOP; HOP 98.5 1.5E-06 5.1E-11 54.9 9.2 74 4-84 8-81 (118)
17 2dba_A Smooth muscle cell asso 98.5 1.7E-06 5.7E-11 57.3 9.8 60 20-83 82-141 (148)
18 2vyi_A SGTA protein; chaperone 98.4 3.2E-06 1.1E-10 54.2 10.2 54 21-78 30-83 (131)
19 2l6j_A TPR repeat-containing p 98.4 4.5E-06 1.5E-10 53.1 10.7 65 3-74 7-71 (111)
20 2xcb_A PCRH, regulatory protei 98.4 2.1E-06 7.3E-11 58.7 9.4 79 4-89 56-134 (142)
21 2fbn_A 70 kDa peptidylprolyl i 98.4 3.1E-06 1.1E-10 60.5 10.6 80 3-89 91-170 (198)
22 3sz7_A HSC70 cochaperone (SGT) 98.4 1.7E-06 5.8E-11 60.2 8.7 66 4-76 49-114 (164)
23 2lni_A Stress-induced-phosphop 98.4 3.2E-06 1.1E-10 54.8 9.2 74 4-84 20-93 (133)
24 2e2e_A Formate-dependent nitri 98.4 2.3E-06 8E-11 59.7 9.0 83 3-90 81-164 (177)
25 3gyz_A Chaperone protein IPGC; 98.4 2.4E-06 8.1E-11 61.4 9.3 75 3-84 39-113 (151)
26 4ga2_A E3 SUMO-protein ligase 98.4 1.1E-06 3.8E-11 61.5 7.3 71 14-88 8-78 (150)
27 2v5f_A Prolyl 4-hydroxylase su 98.4 2.6E-06 9E-11 57.0 8.8 85 4-91 9-96 (104)
28 2xev_A YBGF; tetratricopeptide 98.4 5.5E-06 1.9E-10 54.2 10.0 76 2-81 4-82 (129)
29 1na0_A Designed protein CTPR3; 98.3 7.6E-06 2.6E-10 51.9 10.3 68 4-78 13-80 (125)
30 3upv_A Heat shock protein STI1 98.3 5.2E-06 1.8E-10 54.9 9.6 77 5-88 43-125 (126)
31 4ga2_A E3 SUMO-protein ligase 98.3 6.3E-06 2.1E-10 57.6 10.1 76 2-84 33-108 (150)
32 2vgx_A Chaperone SYCD; alterna 98.3 5.1E-06 1.7E-10 58.2 9.3 79 4-89 59-137 (148)
33 1elw_A TPR1-domain of HOP; HOP 98.3 9.8E-06 3.3E-10 51.1 9.7 76 4-86 42-117 (118)
34 1ihg_A Cyclophilin 40; ppiase 98.3 5.7E-06 1.9E-10 66.9 10.7 80 3-89 276-355 (370)
35 3vtx_A MAMA; tetratricopeptide 98.3 1.8E-06 6E-11 60.3 6.7 55 21-79 91-145 (184)
36 3ma5_A Tetratricopeptide repea 98.3 1.4E-06 4.7E-11 57.1 5.7 71 2-79 9-79 (100)
37 3sz7_A HSC70 cochaperone (SGT) 98.3 7.4E-06 2.5E-10 56.9 9.6 78 3-87 14-91 (164)
38 1zu2_A Mitochondrial import re 98.3 4.5E-06 1.5E-10 62.3 8.7 81 4-88 40-138 (158)
39 3q49_B STIP1 homology and U bo 98.3 6.2E-06 2.1E-10 54.5 8.5 76 4-86 13-88 (137)
40 3ieg_A DNAJ homolog subfamily 98.2 1.1E-05 3.6E-10 60.1 10.6 80 4-90 276-355 (359)
41 1p5q_A FKBP52, FK506-binding p 98.2 8.7E-06 3E-10 64.3 10.6 80 3-89 199-278 (336)
42 1elr_A TPR2A-domain of HOP; HO 98.2 1.2E-05 4.3E-10 51.5 9.5 82 3-89 41-126 (131)
43 3q49_B STIP1 homology and U bo 98.2 1.2E-05 4E-10 53.2 9.5 77 5-88 48-129 (137)
44 4gco_A Protein STI-1; structur 98.2 6.3E-06 2.2E-10 56.4 8.1 74 5-85 18-91 (126)
45 2kck_A TPR repeat; tetratricop 98.2 1.9E-05 6.6E-10 49.4 9.8 75 3-84 9-85 (112)
46 2kat_A Uncharacterized protein 98.2 3.3E-06 1.1E-10 55.4 6.4 68 3-77 22-89 (115)
47 1a17_A Serine/threonine protei 98.2 2.3E-05 7.8E-10 52.7 10.7 69 5-80 52-120 (166)
48 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 6.7E-06 2.3E-10 67.8 9.5 81 3-90 320-400 (457)
49 2lni_A Stress-induced-phosphop 98.2 1.7E-05 5.8E-10 51.3 9.5 75 4-85 54-128 (133)
50 3gyz_A Chaperone protein IPGC; 98.2 8.4E-06 2.9E-10 58.5 8.6 74 3-83 73-146 (151)
51 3qky_A Outer membrane assembly 98.2 1.9E-05 6.4E-10 58.4 10.6 78 4-85 152-239 (261)
52 1hxi_A PEX5, peroxisome target 98.2 6.8E-06 2.3E-10 55.7 7.4 67 3-76 54-120 (121)
53 2pl2_A Hypothetical conserved 98.2 2E-05 6.8E-10 57.7 10.4 80 2-88 7-86 (217)
54 3urz_A Uncharacterized protein 98.1 1.5E-05 5.2E-10 58.0 9.5 72 6-84 60-131 (208)
55 2dba_A Smooth muscle cell asso 98.1 3.7E-05 1.3E-09 50.7 10.5 78 4-85 32-109 (148)
56 3urz_A Uncharacterized protein 98.1 2.6E-05 9E-10 56.7 9.9 74 4-84 8-97 (208)
57 2if4_A ATFKBP42; FKBP-like, al 98.1 5.1E-06 1.8E-10 65.8 6.3 79 3-88 233-311 (338)
58 3u4t_A TPR repeat-containing p 98.1 5E-06 1.7E-10 60.6 5.8 85 4-88 180-268 (272)
59 3qky_A Outer membrane assembly 98.1 5.4E-05 1.8E-09 55.9 11.2 70 3-76 18-87 (261)
60 2vyi_A SGTA protein; chaperone 98.1 5.5E-05 1.9E-09 48.2 9.7 78 4-88 50-127 (131)
61 1na0_A Designed protein CTPR3; 98.1 5.7E-05 2E-09 47.7 9.6 75 4-85 47-121 (125)
62 3k9i_A BH0479 protein; putativ 98.0 8.8E-06 3E-10 53.9 5.8 68 17-87 4-73 (117)
63 3rkv_A Putative peptidylprolyl 98.0 2.2E-05 7.6E-10 54.3 7.9 76 4-86 15-108 (162)
64 2kck_A TPR repeat; tetratricop 98.0 2.2E-05 7.5E-10 49.1 7.2 66 3-75 43-111 (112)
65 4i17_A Hypothetical protein; T 98.0 3.2E-05 1.1E-09 55.8 8.6 77 4-87 121-226 (228)
66 1a17_A Serine/threonine protei 98.0 7.2E-05 2.5E-09 50.2 9.6 74 4-84 17-90 (166)
67 2q7f_A YRRB protein; TPR, prot 98.0 2.2E-05 7.4E-10 55.9 7.0 54 21-78 143-196 (243)
68 2pl2_A Hypothetical conserved 98.0 6E-05 2E-09 55.2 9.5 75 3-84 42-127 (217)
69 2yhc_A BAMD, UPF0169 lipoprote 98.0 4.3E-05 1.5E-09 56.0 8.7 70 3-76 7-76 (225)
70 2y4t_A DNAJ homolog subfamily 97.9 0.00011 3.6E-09 57.3 11.2 80 4-90 299-378 (450)
71 4i17_A Hypothetical protein; T 97.9 0.00013 4.4E-09 52.5 10.9 66 4-76 46-111 (228)
72 3vtx_A MAMA; tetratricopeptide 97.9 9.7E-05 3.3E-09 51.3 9.7 64 5-75 112-175 (184)
73 4abn_A Tetratricopeptide repea 97.9 8.4E-05 2.9E-09 61.2 10.8 85 3-88 216-305 (474)
74 2vq2_A PILW, putative fimbrial 97.9 9.3E-05 3.2E-09 51.6 9.6 71 4-81 80-153 (225)
75 3uq3_A Heat shock protein STI1 97.9 9.7E-05 3.3E-09 52.6 9.7 76 3-85 142-217 (258)
76 3as5_A MAMA; tetratricopeptide 97.9 1.5E-05 5.2E-10 53.7 5.1 77 3-86 79-155 (186)
77 2kat_A Uncharacterized protein 97.9 6.7E-05 2.3E-09 48.9 8.2 61 21-85 3-63 (115)
78 3uq3_A Heat shock protein STI1 97.9 5.2E-05 1.8E-09 54.0 7.9 73 3-82 176-254 (258)
79 2fo7_A Synthetic consensus TPR 97.9 9.4E-05 3.2E-09 46.9 7.9 74 4-84 39-112 (136)
80 4gcn_A Protein STI-1; structur 97.8 2.3E-05 7.8E-10 53.4 5.1 67 4-77 12-78 (127)
81 3ieg_A DNAJ homolog subfamily 97.8 0.00016 5.5E-09 53.6 10.0 75 3-84 6-80 (359)
82 2fo7_A Synthetic consensus TPR 97.8 0.00019 6.6E-09 45.4 9.1 73 3-82 4-76 (136)
83 3as5_A MAMA; tetratricopeptide 97.8 0.00023 7.8E-09 47.8 9.7 70 4-80 46-115 (186)
84 3hym_B Cell division cycle pro 97.8 8.8E-05 3E-09 54.7 8.1 75 3-84 239-313 (330)
85 1elr_A TPR2A-domain of HOP; HO 97.8 0.00013 4.4E-09 46.6 8.0 64 4-74 8-71 (131)
86 2fbn_A 70 kDa peptidylprolyl i 97.8 0.0002 7E-09 50.9 9.8 76 4-85 42-132 (198)
87 2vq2_A PILW, putative fimbrial 97.8 0.00022 7.4E-09 49.7 9.6 72 3-81 11-82 (225)
88 2yhc_A BAMD, UPF0169 lipoprote 97.8 0.00025 8.5E-09 51.8 10.3 78 3-84 44-139 (225)
89 1hh8_A P67PHOX, NCF-2, neutrop 97.8 0.00015 5E-09 51.2 8.6 70 3-76 74-156 (213)
90 3mkr_A Coatomer subunit epsilo 97.8 0.0001 3.5E-09 57.0 8.4 68 7-79 171-238 (291)
91 1xnf_A Lipoprotein NLPI; TPR, 97.8 0.00025 8.6E-09 51.2 9.9 68 4-78 81-148 (275)
92 2ho1_A Type 4 fimbrial biogene 97.7 0.00034 1.2E-08 50.3 10.4 72 4-82 109-182 (252)
93 1hh8_A P67PHOX, NCF-2, neutrop 97.7 0.00028 9.6E-09 49.7 9.5 51 21-75 55-105 (213)
94 1xnf_A Lipoprotein NLPI; TPR, 97.7 0.00026 8.8E-09 51.1 9.4 74 4-84 47-120 (275)
95 2xpi_A Anaphase-promoting comp 97.7 0.00016 5.5E-09 58.5 9.1 73 4-83 520-592 (597)
96 2hr2_A Hypothetical protein; a 97.7 0.00014 4.9E-09 54.1 8.0 80 4-90 61-155 (159)
97 4eqf_A PEX5-related protein; a 97.7 0.00023 7.7E-09 54.3 9.3 74 3-83 68-141 (365)
98 1wao_1 Serine/threonine protei 97.7 0.00022 7.5E-09 59.3 9.9 74 4-84 44-117 (477)
99 3cv0_A Peroxisome targeting si 97.7 0.00028 9.6E-09 51.9 9.5 74 4-84 25-98 (327)
100 2e2e_A Formate-dependent nitri 97.7 0.00031 1.1E-08 48.6 9.2 72 4-82 48-122 (177)
101 2gw1_A Mitochondrial precursor 97.7 0.00041 1.4E-08 54.5 10.9 80 3-86 415-494 (514)
102 2c2l_A CHIP, carboxy terminus 97.7 0.00029 1E-08 53.9 9.6 74 4-84 8-81 (281)
103 2q7f_A YRRB protein; TPR, prot 97.7 0.00049 1.7E-08 48.7 10.0 53 21-77 109-161 (243)
104 3fp2_A TPR repeat-containing p 97.7 0.00031 1.1E-08 55.7 9.8 78 4-85 422-506 (537)
105 2ho1_A Type 4 fimbrial biogene 97.7 0.0003 1E-08 50.6 8.9 77 3-86 144-220 (252)
106 4eqf_A PEX5-related protein; a 97.6 0.00037 1.3E-08 53.1 9.7 74 4-84 217-290 (365)
107 3fp2_A TPR repeat-containing p 97.6 0.00021 7.1E-09 56.8 8.5 77 4-87 29-105 (537)
108 2r5s_A Uncharacterized protein 97.6 9.4E-05 3.2E-09 52.0 5.8 74 3-84 9-82 (176)
109 1fch_A Peroxisomal targeting s 97.6 0.0004 1.4E-08 52.4 9.7 75 3-84 67-141 (368)
110 2h6f_A Protein farnesyltransfe 97.6 0.00024 8.1E-09 58.0 8.8 62 19-84 148-209 (382)
111 1fch_A Peroxisomal targeting s 97.6 0.00055 1.9E-08 51.6 10.0 74 4-84 221-294 (368)
112 1p5q_A FKBP52, FK506-binding p 97.6 0.00037 1.3E-08 54.8 9.4 76 3-84 150-239 (336)
113 3u4t_A TPR repeat-containing p 97.6 0.00018 6.1E-09 52.2 6.9 65 3-75 6-70 (272)
114 3cv0_A Peroxisome targeting si 97.6 0.00062 2.1E-08 50.0 9.7 71 4-81 176-246 (327)
115 3mkr_A Coatomer subunit epsilo 97.6 0.00051 1.7E-08 53.0 9.6 74 3-83 203-277 (291)
116 3ma5_A Tetratricopeptide repea 97.6 0.00017 5.8E-09 46.8 5.9 50 39-88 5-54 (100)
117 1ihg_A Cyclophilin 40; ppiase 97.5 0.0005 1.7E-08 55.5 9.7 77 4-87 227-319 (370)
118 2pzi_A Probable serine/threoni 97.5 0.00036 1.2E-08 60.3 9.0 75 3-84 436-510 (681)
119 1w3b_A UDP-N-acetylglucosamine 97.5 0.00064 2.2E-08 52.4 9.5 69 4-79 275-343 (388)
120 2vsy_A XCC0866; transferase, g 97.5 0.0006 2.1E-08 56.4 10.0 57 19-79 39-95 (568)
121 4gcn_A Protein STI-1; structur 97.5 0.0005 1.7E-08 46.5 7.9 75 3-81 45-123 (127)
122 2y4t_A DNAJ homolog subfamily 97.5 0.00067 2.3E-08 52.7 9.6 70 4-80 30-99 (450)
123 1kt0_A FKBP51, 51 kDa FK506-bi 97.5 0.00062 2.1E-08 56.0 9.5 75 4-84 272-360 (457)
124 2r5s_A Uncharacterized protein 97.5 0.00067 2.3E-08 47.5 8.4 56 22-81 93-150 (176)
125 3hym_B Cell division cycle pro 97.5 0.00053 1.8E-08 50.5 8.1 61 19-83 72-133 (330)
126 2vsy_A XCC0866; transferase, g 97.4 0.00076 2.6E-08 55.8 9.5 78 4-88 61-138 (568)
127 2gw1_A Mitochondrial precursor 97.4 0.00095 3.2E-08 52.4 9.6 73 4-84 10-82 (514)
128 2h6f_A Protein farnesyltransfe 97.4 0.00096 3.3E-08 54.4 9.8 77 5-88 102-179 (382)
129 2if4_A ATFKBP42; FKBP-like, al 97.4 0.00072 2.5E-08 53.3 8.7 75 4-84 183-273 (338)
130 2c2l_A CHIP, carboxy terminus 97.4 0.00056 1.9E-08 52.3 7.7 66 3-75 41-106 (281)
131 1w3b_A UDP-N-acetylglucosamine 97.3 0.0015 5.1E-08 50.3 9.6 57 19-79 253-309 (388)
132 1wao_1 Serine/threonine protei 97.3 0.00086 3E-08 55.7 8.8 65 16-84 19-83 (477)
133 4gyw_A UDP-N-acetylglucosamine 97.3 0.0011 3.8E-08 58.7 9.7 68 4-78 81-148 (723)
134 4gyw_A UDP-N-acetylglucosamine 97.2 0.0014 4.9E-08 58.0 9.7 54 21-78 61-114 (723)
135 4abn_A Tetratricopeptide repea 97.2 0.0019 6.4E-08 53.1 9.8 79 3-85 173-268 (474)
136 3qou_A Protein YBBN; thioredox 97.1 0.0018 6E-08 49.5 8.1 62 22-87 204-267 (287)
137 2hr2_A Hypothetical protein; a 97.1 0.0013 4.5E-08 48.8 7.1 71 4-78 15-101 (159)
138 1na3_A Designed protein CTPR2; 97.1 0.0017 5.7E-08 39.5 6.3 46 39-84 7-52 (91)
139 2l6j_A TPR repeat-containing p 97.1 0.0017 5.8E-08 40.8 6.3 45 40-84 3-47 (111)
140 3qou_A Protein YBBN; thioredox 97.1 0.0018 6.1E-08 49.5 7.6 66 3-75 120-185 (287)
141 2xpi_A Anaphase-promoting comp 97.1 0.0047 1.6E-07 49.9 10.2 77 4-85 479-560 (597)
142 1qqe_A Vesicular transport pro 97.0 0.0023 7.7E-08 48.7 7.2 71 4-78 162-236 (292)
143 4g1t_A Interferon-induced prot 96.9 0.0067 2.3E-07 47.6 9.7 73 5-81 214-287 (472)
144 3nf1_A KLC 1, kinesin light ch 96.9 0.0028 9.7E-08 46.1 6.7 35 39-73 276-310 (311)
145 4g1t_A Interferon-induced prot 96.8 0.0035 1.2E-07 49.2 7.6 74 4-82 140-216 (472)
146 2pzi_A Probable serine/threoni 96.7 0.0038 1.3E-07 53.9 7.5 67 15-85 403-477 (681)
147 3edt_B KLC 2, kinesin light ch 96.7 0.0085 2.9E-07 42.6 8.2 62 3-70 88-156 (283)
148 3rjv_A Putative SEL1 repeat pr 96.7 0.01 3.4E-07 43.2 8.7 72 3-77 88-164 (212)
149 4f3v_A ESX-1 secretion system 96.6 0.013 4.5E-07 46.9 9.6 72 3-80 174-246 (282)
150 1ouv_A Conserved hypothetical 96.6 0.0039 1.3E-07 45.8 6.1 64 3-72 149-217 (273)
151 3q15_A PSP28, response regulat 96.5 0.016 5.5E-07 45.0 9.1 64 3-73 225-293 (378)
152 3ro3_A PINS homolog, G-protein 96.4 0.019 6.4E-07 37.1 7.8 69 3-72 52-120 (164)
153 2ifu_A Gamma-SNAP; membrane fu 96.4 0.022 7.6E-07 43.4 9.3 77 4-85 159-241 (307)
154 3edt_B KLC 2, kinesin light ch 96.4 0.021 7.3E-07 40.5 8.5 52 17-71 22-73 (283)
155 3ro3_A PINS homolog, G-protein 96.3 0.014 4.7E-07 37.7 6.6 70 3-74 12-82 (164)
156 2ond_A Cleavage stimulation fa 96.3 0.017 6E-07 43.8 7.9 54 19-76 80-134 (308)
157 3rjv_A Putative SEL1 repeat pr 96.2 0.019 6.5E-07 41.7 7.6 66 2-73 52-121 (212)
158 3nf1_A KLC 1, kinesin light ch 96.2 0.048 1.6E-06 39.4 9.6 63 3-71 30-99 (311)
159 2kc7_A BFR218_protein; tetratr 96.1 0.017 5.8E-07 36.0 6.0 41 45-85 4-45 (99)
160 1zu2_A Mitochondrial import re 96.1 0.014 4.8E-07 43.2 6.4 59 18-80 17-85 (158)
161 3gw4_A Uncharacterized protein 96.0 0.063 2.2E-06 36.7 9.2 67 3-74 29-102 (203)
162 3dra_A Protein farnesyltransfe 95.9 0.037 1.2E-06 44.2 8.4 77 3-85 35-113 (306)
163 1qqe_A Vesicular transport pro 95.9 0.031 1.1E-06 42.3 7.6 70 5-77 122-194 (292)
164 2ond_A Cleavage stimulation fa 95.7 0.044 1.5E-06 41.6 8.0 67 4-77 103-170 (308)
165 4a1s_A PINS, partner of inscut 95.7 0.034 1.2E-06 42.5 7.3 63 4-70 52-115 (411)
166 3ulq_A Response regulator aspa 95.7 0.053 1.8E-06 41.9 8.3 64 3-72 227-295 (383)
167 3q7a_A Farnesyltransferase alp 95.6 0.091 3.1E-06 43.1 10.1 79 4-88 57-136 (349)
168 3sf4_A G-protein-signaling mod 95.6 0.042 1.4E-06 41.4 7.3 63 4-70 13-76 (406)
169 3ro2_A PINS homolog, G-protein 95.5 0.052 1.8E-06 39.1 7.3 63 4-70 9-72 (338)
170 4a1s_A PINS, partner of inscut 95.4 0.04 1.4E-06 42.2 6.8 68 3-74 226-296 (411)
171 1ouv_A Conserved hypothetical 95.4 0.13 4.3E-06 37.5 9.3 60 3-71 9-72 (273)
172 2ifu_A Gamma-SNAP; membrane fu 95.4 0.025 8.5E-07 43.1 5.4 67 4-75 120-189 (307)
173 3u3w_A Transcriptional activat 95.3 0.017 5.6E-07 43.5 4.2 54 18-74 170-229 (293)
174 3ro2_A PINS homolog, G-protein 95.3 0.086 2.9E-06 38.0 7.9 34 39-72 261-294 (338)
175 2xm6_A Protein corresponding t 95.3 0.029 1E-06 45.3 5.8 31 41-71 399-433 (490)
176 3bee_A Putative YFRE protein; 95.1 0.056 1.9E-06 35.6 5.9 47 39-85 4-53 (93)
177 1klx_A Cysteine rich protein B 95.0 0.16 5.5E-06 34.6 8.3 62 3-70 60-126 (138)
178 3e4b_A ALGK; tetratricopeptide 94.9 0.092 3.1E-06 42.7 7.9 76 2-84 178-257 (452)
179 4b4t_Q 26S proteasome regulato 94.9 0.055 1.9E-06 41.8 6.2 74 2-79 6-93 (434)
180 3dra_A Protein farnesyltransfe 94.8 0.061 2.1E-06 42.9 6.4 65 17-85 124-190 (306)
181 3q15_A PSP28, response regulat 94.8 0.21 7E-06 38.6 9.3 76 4-82 186-268 (378)
182 3gw4_A Uncharacterized protein 94.7 0.15 5.2E-06 34.8 7.5 65 4-71 111-177 (203)
183 2xm6_A Protein corresponding t 94.7 0.25 8.5E-06 39.7 9.9 70 2-79 330-403 (490)
184 2qfc_A PLCR protein; TPR, HTH, 94.6 0.095 3.3E-06 39.3 6.8 59 18-76 130-193 (293)
185 2qfc_A PLCR protein; TPR, HTH, 94.6 0.16 5.5E-06 38.0 8.1 84 3-90 199-285 (293)
186 1dce_A Protein (RAB geranylger 94.6 0.18 6.2E-06 43.0 9.2 79 5-89 33-121 (567)
187 3qww_A SET and MYND domain-con 94.5 0.081 2.8E-06 44.1 6.7 64 19-85 363-431 (433)
188 3ulq_A Response regulator aspa 94.5 0.28 9.6E-06 37.7 9.4 73 4-79 188-268 (383)
189 3u3w_A Transcriptional activat 94.5 0.2 6.7E-06 37.5 8.3 66 3-71 199-267 (293)
190 2ooe_A Cleavage stimulation fa 94.4 0.22 7.5E-06 40.5 9.0 51 21-75 304-355 (530)
191 1dce_A Protein (RAB geranylger 94.4 0.16 5.5E-06 43.4 8.5 67 18-88 88-156 (567)
192 3sf4_A G-protein-signaling mod 94.4 0.23 8E-06 37.2 8.4 67 4-73 271-339 (406)
193 2ooe_A Cleavage stimulation fa 94.3 0.087 3E-06 42.9 6.2 52 19-74 407-458 (530)
194 3u64_A Protein TP_0956; tetrat 94.2 0.092 3.2E-06 42.9 6.2 54 17-73 218-272 (301)
195 3dss_A Geranylgeranyl transfer 93.8 0.21 7.3E-06 40.5 7.8 77 7-88 115-192 (331)
196 3dss_A Geranylgeranyl transfer 93.7 0.18 6.1E-06 40.9 7.0 66 19-88 90-157 (331)
197 3e4b_A ALGK; tetratricopeptide 93.7 0.16 5.4E-06 41.3 6.7 69 3-81 251-324 (452)
198 3q7a_A Farnesyltransferase alp 93.2 0.42 1.4E-05 39.1 8.5 69 18-90 104-174 (349)
199 1hz4_A MALT regulatory protein 92.8 0.41 1.4E-05 36.3 7.5 68 4-74 97-168 (373)
200 4f3v_A ESX-1 secretion system 92.5 0.52 1.8E-05 37.5 8.0 31 41-71 171-201 (282)
201 3n71_A Histone lysine methyltr 92.4 0.81 2.8E-05 38.6 9.4 67 19-88 374-445 (490)
202 3qwp_A SET and MYND domain-con 92.2 0.55 1.9E-05 38.8 8.1 64 21-87 354-422 (429)
203 3mv2_B Coatomer subunit epsilo 92.1 0.3 1E-05 39.5 6.1 59 22-84 85-145 (310)
204 3ffl_A Anaphase-promoting comp 92.1 0.77 2.6E-05 34.4 8.0 67 3-70 23-92 (167)
205 2w2u_A Hypothetical P60 katani 90.7 0.82 2.8E-05 30.2 6.2 66 13-90 10-75 (83)
206 3ly7_A Transcriptional activat 90.6 0.97 3.3E-05 37.6 7.9 67 6-73 202-309 (372)
207 1zbp_A Hypothetical protein VP 89.4 2.3 8E-05 34.1 9.0 78 9-93 6-84 (273)
208 1hz4_A MALT regulatory protein 88.6 2.4 8.3E-05 32.0 8.3 64 4-71 139-204 (373)
209 2ff4_A Probable regulatory pro 88.0 2.1 7.1E-05 34.7 7.9 63 18-85 186-255 (388)
210 1klx_A Cysteine rich protein B 87.9 3.1 0.00011 28.0 7.8 54 18-79 40-97 (138)
211 3qww_A SET and MYND domain-con 87.8 0.59 2E-05 38.8 4.7 64 18-84 313-388 (433)
212 3mv2_B Coatomer subunit epsilo 87.8 1.5 5.1E-05 35.4 6.9 62 17-83 225-295 (310)
213 3u64_A Protein TP_0956; tetrat 87.8 1.3 4.4E-05 36.1 6.5 57 16-74 176-237 (301)
214 2cfu_A SDSA1; SDS-hydrolase, l 87.6 1.3 4.3E-05 38.9 6.8 49 41-89 449-497 (658)
215 3t5x_A PCI domain-containing p 86.4 1.6 5.5E-05 32.8 6.1 37 38-74 11-47 (203)
216 1pc2_A Mitochondria fission pr 85.2 1.4 4.7E-05 32.3 4.9 54 15-72 10-67 (152)
217 4b4t_Q 26S proteasome regulato 84.4 3.5 0.00012 31.5 7.2 57 16-72 148-206 (434)
218 3n71_A Histone lysine methyltr 84.1 0.96 3.3E-05 38.2 4.2 63 17-82 323-397 (490)
219 3ly7_A Transcriptional activat 80.3 3.5 0.00012 34.2 6.1 55 17-76 291-345 (372)
220 3kae_A CDC27, possible protein 79.5 1.9 6.4E-05 33.7 3.9 33 39-71 60-94 (242)
221 3qwp_A SET and MYND domain-con 79.3 3.1 0.00011 34.2 5.5 67 18-84 302-377 (429)
222 1wfd_A Hypothetical protein 15 78.3 12 0.00041 24.7 7.4 66 13-90 6-71 (93)
223 2v6y_A AAA family ATPase, P60 77.5 4.9 0.00017 26.2 5.1 61 18-90 7-67 (83)
224 2v5f_A Prolyl 4-hydroxylase su 77.3 2.1 7.1E-05 27.6 3.2 31 40-71 5-35 (104)
225 3mv2_A Coatomer subunit alpha; 75.0 4.3 0.00015 33.4 5.1 36 50-85 216-251 (325)
226 4gns_B Protein CSD3, chitin bi 69.8 5 0.00017 36.1 4.7 47 17-67 351-397 (754)
227 3mkr_B Coatomer subunit alpha; 69.6 5.5 0.00019 32.6 4.6 35 50-84 207-241 (320)
228 2yhe_A SEC-alkyl sulfatase; hy 71.5 1 3.6E-05 39.8 0.0 49 41-89 461-509 (668)
229 1j2j_B ADP-ribosylation factor 66.1 5 0.00017 24.0 2.7 26 8-33 14-39 (45)
230 2l2t_A Receptor tyrosine-prote 63.8 9.5 0.00032 22.6 3.6 29 91-119 9-40 (44)
231 4b4t_S RPN3, 26S proteasome re 62.8 6.6 0.00023 34.1 4.0 37 39-75 268-304 (523)
232 2ff4_A Probable regulatory pro 62.1 14 0.00048 29.7 5.6 41 39-79 169-209 (388)
233 2lbg_A Major prion protein; co 61.6 12 0.00039 20.1 3.3 22 94-115 4-27 (27)
234 3ffl_A Anaphase-promoting comp 60.4 19 0.00065 26.7 5.7 26 41-66 122-147 (167)
235 2v6x_A Vacuolar protein sortin 59.0 15 0.00051 23.6 4.3 63 16-90 7-69 (85)
236 4a5x_A MITD1, MIT domain-conta 58.6 17 0.00057 23.8 4.6 34 57-90 39-72 (86)
237 2cpt_A SKD1 protein, vacuolar 58.4 20 0.00068 24.8 5.2 62 17-90 13-75 (117)
238 2ks1_B Epidermal growth factor 54.7 6 0.00021 23.4 1.6 28 92-119 11-41 (44)
239 3t5v_B Nuclear mRNA export pro 54.4 17 0.00058 30.7 5.0 37 38-74 217-254 (455)
240 2rpa_A Katanin P60 ATPase-cont 54.3 10 0.00036 24.8 2.9 19 51-69 22-40 (78)
241 4e6h_A MRNA 3'-END-processing 54.1 28 0.00097 30.4 6.5 22 56-77 485-506 (679)
242 4ady_A RPN2, 26S proteasome re 52.9 43 0.0015 31.2 7.7 61 18-81 49-113 (963)
243 1xi4_A Clathrin heavy chain; a 51.5 56 0.0019 32.2 8.5 81 4-97 1109-1202(1630)
244 1zl8_A LIN-7; heterodimer, alp 49.5 12 0.00042 23.0 2.5 18 16-33 6-23 (53)
245 3mkr_B Coatomer subunit alpha; 49.2 35 0.0012 27.8 5.9 50 46-97 107-161 (320)
246 4e6h_A MRNA 3'-END-processing 46.8 37 0.0013 29.7 6.1 49 23-75 52-100 (679)
247 2uy1_A Cleavage stimulation fa 45.9 50 0.0017 27.2 6.5 53 19-76 195-247 (493)
248 2kxe_A DNA polymerase II small 44.9 16 0.00054 23.8 2.6 33 24-60 6-38 (75)
249 2npu_A FKBP12-rapamycin comple 43.3 53 0.0018 23.2 5.4 67 17-90 54-125 (126)
250 1naf_A ADP-ribosylation factor 42.8 95 0.0033 22.6 8.0 62 9-77 24-86 (158)
251 3ebb_A Phospholipase A2-activa 41.5 98 0.0034 24.4 7.4 48 3-55 215-264 (304)
252 4g26_A Pentatricopeptide repea 41.3 82 0.0028 26.0 7.2 56 16-74 83-140 (501)
253 3mv2_A Coatomer subunit alpha; 40.5 53 0.0018 26.8 5.7 50 47-98 120-174 (325)
254 2jvf_A De novo protein M7; tet 40.5 40 0.0014 22.4 4.1 38 56-93 30-78 (96)
255 3d0w_A YFLH protein; GRAM-posi 39.6 23 0.00078 24.6 2.9 28 50-85 56-83 (104)
256 2e2a_A Protein (enzyme IIA); h 38.9 35 0.0012 23.3 3.8 28 40-67 19-46 (105)
257 1wcr_A PTS system, N, N'-diace 38.2 34 0.0012 23.3 3.6 28 40-67 17-44 (103)
258 2knc_B Integrin beta-3; transm 37.9 26 0.00088 22.8 2.8 8 96-103 15-22 (79)
259 1pfi_A Major coat protein of P 36.8 42 0.0014 19.8 3.4 24 93-116 21-45 (46)
260 4f52_E Glomulin; cullin-ring E 36.0 2.1E+02 0.0073 24.7 9.2 94 4-98 319-423 (596)
261 4g26_A Pentatricopeptide repea 35.0 1.7E+02 0.0057 24.1 8.1 62 19-83 156-219 (501)
262 2k9y_A Ephrin type-A receptor 35.0 36 0.0012 18.8 2.9 15 92-106 13-27 (41)
263 4b4t_R RPN7, 26S proteasome re 34.3 21 0.00071 29.1 2.4 37 39-75 129-165 (429)
264 1wy6_A Hypothetical protein ST 33.8 1.3E+02 0.0045 22.4 6.5 36 25-64 113-148 (172)
265 1ixm_A SPO0B, protein (sporula 33.6 91 0.0031 22.9 5.7 43 21-69 16-60 (192)
266 3k1s_A PTS system, cellobiose- 33.0 49 0.0017 22.8 3.8 28 40-67 21-48 (109)
267 2llm_A Amyloid beta A4 protein 38.0 9.8 0.00033 22.6 0.0 28 89-116 15-42 (43)
268 3l8r_A PTCA, putative PTS syst 30.3 57 0.0019 22.9 3.8 28 40-67 36-63 (120)
269 1oxz_A ADP-ribosylation factor 30.2 1.7E+02 0.0058 21.8 8.1 60 9-75 40-100 (186)
270 2uy1_A Cleavage stimulation fa 30.0 51 0.0017 27.1 4.1 63 5-75 291-354 (493)
271 3aei_A Prefoldin beta subunit 29.1 1.1E+02 0.0036 20.5 4.8 28 59-90 2-29 (99)
272 3bu8_A Telomeric repeat-bindin 27.2 1.1E+02 0.0039 23.9 5.3 50 38-87 110-161 (235)
273 2k1k_A Ephrin type-A receptor 27.0 64 0.0022 18.1 2.9 10 98-107 16-25 (38)
274 2o8s_A AGR_C_984P; all alpha-h 26.5 79 0.0027 25.9 4.5 61 16-76 78-139 (323)
275 2k9j_B Integrin beta-3; transm 26.3 61 0.0021 18.6 2.8 6 96-101 14-19 (43)
276 3ub0_A Non-structural protein 25.9 68 0.0023 24.6 3.7 30 56-85 18-47 (199)
277 2yin_A DOCK2, dedicator of cyt 21.5 87 0.003 26.0 4.0 40 23-64 19-58 (436)
278 1k19_A Chemosensory protein CS 21.4 77 0.0026 21.9 3.1 31 60-90 23-53 (112)
279 3uqc_A Probable conserved tran 20.7 79 0.0027 23.5 3.3 33 58-90 234-266 (286)
280 2pm7_A Protein WEB1, protein t 20.4 1.7E+02 0.0059 24.0 5.5 48 40-90 335-382 (399)
No 1
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=100.00 E-value=1.7e-44 Score=270.03 Aligned_cols=98 Identities=37% Similarity=0.717 Sum_probs=95.5
Q ss_pred hHHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHH
Q psy16295 2 TQFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLE 81 (128)
Q Consensus 2 ~~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk 81 (128)
++||||||||||++++|+++||.||+++++++ | +++|||+||||+||||+|||++|++||+.+|++||+|+||++|+
T Consensus 41 t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~-~--~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk 117 (144)
T 1y8m_A 41 SRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-E--SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 117 (144)
T ss_dssp HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC-C--STHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-c--cchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 79999999999999999999999999999988 6 69999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhHHHHHHHHHHH
Q psy16295 82 SIVKKRMETEGLKGMALAGGA 102 (128)
Q Consensus 82 ~~Ie~~i~kdGliG~~i~gga 102 (128)
++|+++|+|||+|||||+||+
T Consensus 118 ~~Ie~~i~kdGliG~ai~gg~ 138 (144)
T 1y8m_A 118 SMVEDKIQKETLKGVVVAGGV 138 (144)
T ss_dssp HHHHHHHHHTTTTTCCCCCSC
T ss_pred HHHHHHHHHhchhhhhhhhcc
Confidence 999999999999999999984
No 2
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.2e-41 Score=255.95 Aligned_cols=104 Identities=51% Similarity=0.942 Sum_probs=99.1
Q ss_pred hHHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHH
Q psy16295 2 TQFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLE 81 (128)
Q Consensus 2 ~~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk 81 (128)
++|+|||+|+||+++.|+++||.+|+++++.+.| +++|||+||||+||||+|||++|++|++++|++||+|+||+.|+
T Consensus 34 ~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p--~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk 111 (152)
T 1pc2_A 34 TQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSK--EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELE 111 (152)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCH--HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCc--cchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 6899999999999999999999999999999855 58999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy16295 82 SIVKKRMETEGLKGMALAGGAVLAQG 107 (128)
Q Consensus 82 ~~Ie~~i~kdGliG~~i~gga~~~~g 107 (128)
++|++++++||+|||||+||+++++|
T Consensus 112 ~~ie~~~~kdgl~G~~i~gg~~~~~~ 137 (152)
T 1pc2_A 112 RLIDKAMKKDGLVGMAIVGGMALGVA 137 (152)
T ss_dssp HHHHHHHHHTTCCCSSCSSSSSCCSS
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999875554
No 3
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=100.00 E-value=1.6e-38 Score=235.31 Aligned_cols=90 Identities=33% Similarity=0.641 Sum_probs=87.3
Q ss_pred hHHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHH
Q psy16295 2 TQFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLE 81 (128)
Q Consensus 2 ~~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk 81 (128)
|+|+||||||||+++.|+++||.||+++++++ | +++||||||||+||||+|||++|++|++.+|++||+|+||++|+
T Consensus 42 t~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~-~--~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk 118 (134)
T 3o48_A 42 SRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-E--SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 118 (134)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-G--GGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-c--chhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 79999999999999999999999999999998 6 69999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhHHH
Q psy16295 82 SIVKKRMETEGLK 94 (128)
Q Consensus 82 ~~Ie~~i~kdGli 94 (128)
++|+++|+|||-+
T Consensus 119 ~~Ie~ki~kd~~~ 131 (134)
T 3o48_A 119 SMVEDKIQKEENL 131 (134)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccc
Confidence 9999999999953
No 4
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=100.00 E-value=1.8e-38 Score=232.62 Aligned_cols=90 Identities=51% Similarity=0.970 Sum_probs=86.0
Q ss_pred hHHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHH
Q psy16295 2 TQFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLE 81 (128)
Q Consensus 2 ~~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk 81 (128)
++|+|||+||||+++.|+++||.||+++++++.| +++|||+||||+||||+|||++|++|++.+|++||+|+||++|+
T Consensus 37 ~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p--~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk 114 (126)
T 1nzn_A 37 TQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSK--EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELE 114 (126)
T ss_dssp HHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCc--chHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 6899999999999999999999999999999856 68999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhHH
Q psy16295 82 SIVKKRMETEGL 93 (128)
Q Consensus 82 ~~Ie~~i~kdGl 93 (128)
++|+++|+|||+
T Consensus 115 ~~i~~~i~kdGl 126 (126)
T 1nzn_A 115 RLIDKAMKKDGL 126 (126)
T ss_dssp HHHHHHHHHC--
T ss_pred HHHHHHHHhccC
Confidence 999999999996
No 5
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.97 E-value=2.9e-09 Score=71.85 Aligned_cols=81 Identities=15% Similarity=0.037 Sum_probs=75.1
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16295 3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLES 82 (128)
Q Consensus 3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~ 82 (128)
.+.||.+|+.+.+.....++..+|++.++.+ | .....+++++..+++.|+|.+|+.+|+.+|+.+|+++....+.+
T Consensus 9 ~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p---~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~~~~i~~ 84 (93)
T 3bee_A 9 LAAKATTLYYLHKQAMTDEVSLLLEQALQLE-P---YNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLDRVTIIE 84 (93)
T ss_dssp HHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCCHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-c---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHH
Confidence 5789999999999888899999999999999 7 68999999999999999999999999999999999888888888
Q ss_pred HHHHH
Q psy16295 83 IVKKR 87 (128)
Q Consensus 83 ~Ie~~ 87 (128)
.|++.
T Consensus 85 ~I~~A 89 (93)
T 3bee_A 85 SINKA 89 (93)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
No 6
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.68 E-value=1.8e-07 Score=59.68 Aligned_cols=71 Identities=20% Similarity=0.344 Sum_probs=63.6
Q ss_pred ChHHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHH-HHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHH
Q psy16295 1 MTQFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRD-YLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQ 78 (128)
Q Consensus 1 ~~~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd-~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~ 78 (128)
|..|+.|..+.+..+ ..++++.++..++.+ | ...+ .++.+|..++++|+|++|+.+++.+++.+|+|.++.
T Consensus 1 ~~~~~~a~~~~~~~~---~~~A~~~~~~al~~~-p---~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 1 MDQLKTIKELINQGD---IENALQALEEFLQTE-P---VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp CCTHHHHHHHHHHTC---HHHHHHHHHHHHHHC-S---STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred CcHHHHHHHHHHcCC---HHHHHHHHHHHHHHC-C---CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 678889999888764 568999999999998 6 4567 999999999999999999999999999999999886
No 7
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.61 E-value=2.5e-07 Score=61.50 Aligned_cols=77 Identities=12% Similarity=0.096 Sum_probs=64.4
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16295 3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLES 82 (128)
Q Consensus 3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~ 82 (128)
.+++|.++....+ ..++++.++..++.+ | ...+.++.+|..++++|+|++|+.+++..|+..|+|++......
T Consensus 30 ~~~lg~~~~~~~~---~~~A~~~~~~al~~~-p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 102 (117)
T 3k9i_A 30 YLGLGSTFRTLGE---YRKAEAVLANGVKQF-P---NHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQ 102 (117)
T ss_dssp HHHHHHHHHHTTC---HHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHH
T ss_pred HHHHHHHHHHcCC---HHHHHHHHHHHHHhC-C---CchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 4677777776654 458999999999888 6 56899999999999999999999999999999999998887777
Q ss_pred HHHH
Q psy16295 83 IVKK 86 (128)
Q Consensus 83 ~Ie~ 86 (128)
.|..
T Consensus 103 ai~~ 106 (117)
T 3k9i_A 103 AILF 106 (117)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6653
No 8
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.60 E-value=3.7e-07 Score=62.67 Aligned_cols=70 Identities=11% Similarity=0.143 Sum_probs=52.9
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHH
Q psy16295 3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQH 79 (128)
Q Consensus 3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~ 79 (128)
-++.|.++.+..+ ..++++.++..++-+ | ...+.++.+|..+.++|+|++|+.+++..|+++|+|.+++.
T Consensus 50 ~~~~~~~~~~~~~---~~~A~~~~~~al~~~-p---~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~ 119 (126)
T 4gco_A 50 YSNRAACLTKLME---FQRALDDCDTCIRLD-S---KFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEARE 119 (126)
T ss_dssp HHHHHHHHHHTTC---HHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHhhHHHhhcc---HHHHHHHHHHHHHhh-h---hhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHH
Confidence 3566777766553 446788888877777 5 56778888888888888888888888888888888887754
No 9
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.59 E-value=5.8e-07 Score=59.01 Aligned_cols=64 Identities=8% Similarity=0.011 Sum_probs=31.2
Q ss_pred HHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16295 21 KGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIVK 85 (128)
Q Consensus 21 ~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~Ie 85 (128)
+++..++..++.. |+.....+.+|.+|..++++|+|++|+.+++.+++..|++..+...+..+.
T Consensus 57 ~A~~~~~~~~~~~-p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~ 120 (129)
T 2xev_A 57 LAEAQFRDLVSRY-PTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQ 120 (129)
T ss_dssp HHHHHHHHHHHHC-TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 4555555555444 310111445555555555555555555555555555555555544444443
No 10
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.59 E-value=3.7e-07 Score=63.43 Aligned_cols=80 Identities=19% Similarity=0.174 Sum_probs=66.1
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCH-HHHHHH
Q psy16295 3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENS-QVQHLE 81 (128)
Q Consensus 3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~-QA~~Lk 81 (128)
-++.|.++.+.. +..+++..++..++.+ | ...+.+|.+|.+++++|+|++|+.+++..|+++|+|. .+....
T Consensus 66 ~~nla~~~~~~~---~~~~A~~~~~~al~~~-p---~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l 138 (162)
T 3rkv_A 66 YANMSQCYLNIG---DLHEAEETSSEVLKRE-E---TNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREM 138 (162)
T ss_dssp HHHHHHHHHHHT---CHHHHHHHHHHHHHHS-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHHHhcC---cHHHHHHHHHHHHhcC-C---cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 356777777655 4568999999999988 6 6789999999999999999999999999999999999 556566
Q ss_pred HHHHHHHh
Q psy16295 82 SIVKKRME 89 (128)
Q Consensus 82 ~~Ie~~i~ 89 (128)
..+..++.
T Consensus 139 ~~~~~~~~ 146 (162)
T 3rkv_A 139 KIVTERRA 146 (162)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655554
No 11
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.53 E-value=3.8e-07 Score=62.60 Aligned_cols=75 Identities=8% Similarity=0.110 Sum_probs=52.8
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16295 3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLES 82 (128)
Q Consensus 3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~ 82 (128)
.|++|..+.+.. +..+++..++..+..+ | ...+.++.+|..++++|+|++|+.+++..++++|+|..+....-
T Consensus 21 ~~~~a~~~~~~g---~~~~A~~~~~~al~~~-p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 93 (142)
T 2xcb_A 21 LYALGFNQYQAG---KWDDAQKIFQALCMLD-H---YDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAA 93 (142)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred HHHHHHHHHHHc---cHHHHHHHHHHHHHhC-C---ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 456666666654 3446777777777777 5 56777777788888888888888888888888887777655444
Q ss_pred HH
Q psy16295 83 IV 84 (128)
Q Consensus 83 ~I 84 (128)
.+
T Consensus 94 ~~ 95 (142)
T 2xcb_A 94 EC 95 (142)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 12
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.53 E-value=5.1e-07 Score=59.91 Aligned_cols=73 Identities=8% Similarity=0.057 Sum_probs=41.4
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16295 5 NYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIV 84 (128)
Q Consensus 5 ~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~I 84 (128)
+.|..+.+.. +..++++.+++.++.+ | ...+.++.+|..++++|+|++|+.+++.+++++|+|..+.-..-.+
T Consensus 9 ~~g~~~~~~~---~~~~A~~~~~~al~~~-p---~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 9 LEGKEYFTKS---DWPNAVKAYTEMIKRA-P---EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHhc---CHHHHHHHHHHHHHhC-C---CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 4444444433 3345666666666655 4 3456666666666666666666666666666666666554444333
No 13
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.50 E-value=2.1e-06 Score=52.96 Aligned_cols=75 Identities=12% Similarity=0.257 Sum_probs=62.5
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16295 3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLES 82 (128)
Q Consensus 3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~ 82 (128)
.++.|..+.+.. +..+++..++..++.+ | ...+.++.+|..++++|+|++|+.+++.+++.+|++.++.....
T Consensus 12 ~~~la~~~~~~~---~~~~A~~~~~~a~~~~-~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~ 84 (91)
T 1na3_A 12 WYNLGNAYYKQG---DYDEAIEYYQKALELD-P---NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLG 84 (91)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHcc---CHHHHHHHHHHHHhcC-C---CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 356677776654 5568999999999888 6 56889999999999999999999999999999999988876544
Q ss_pred HH
Q psy16295 83 IV 84 (128)
Q Consensus 83 ~I 84 (128)
.+
T Consensus 85 ~~ 86 (91)
T 1na3_A 85 NA 86 (91)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 14
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.50 E-value=1.6e-06 Score=58.90 Aligned_cols=76 Identities=8% Similarity=0.123 Sum_probs=65.6
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16295 3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLES 82 (128)
Q Consensus 3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~ 82 (128)
.|+.|..+.+..+ ..+++..++..++.+ | ...+.++.+|..+.++|+|++|+.+++..++++|++.++....-
T Consensus 20 ~~~~g~~~~~~g~---~~~A~~~~~~al~~~-P---~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la 92 (121)
T 1hxi_A 20 PMEEGLSMLKLAN---LAEAALAFEAVCQKE-P---EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALA 92 (121)
T ss_dssp HHHHHHHHHHTTC---HHHHHHHHHHHHHHS-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCC---HHHHHHHHHHHHHHC-C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4778888887664 558999999999998 7 67999999999999999999999999999999999998876554
Q ss_pred HHH
Q psy16295 83 IVK 85 (128)
Q Consensus 83 ~Ie 85 (128)
.+-
T Consensus 93 ~~~ 95 (121)
T 1hxi_A 93 VSH 95 (121)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 15
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.48 E-value=7.2e-07 Score=62.62 Aligned_cols=71 Identities=7% Similarity=0.138 Sum_probs=42.5
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHH
Q psy16295 4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLE 81 (128)
Q Consensus 4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk 81 (128)
+++|..+.+..+ ..+++..++..+..+ | ...+.++.+|..+.++|+|++|+.+++.+++++|+|..+.--.
T Consensus 25 ~~~g~~~~~~g~---~~~A~~~~~~al~~~-p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 95 (148)
T 2vgx_A 25 YSLAFNQYQSGX---YEDAHXVFQALCVLD-H---YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHA 95 (148)
T ss_dssp HHHHHHHHHTTC---HHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHH
T ss_pred HHHHHHHHHcCC---hHHHHHHHHHHHHcC-c---ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHH
Confidence 455555555443 335666666666665 4 4566666666666666666666666666666666666554433
No 16
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.48 E-value=1.5e-06 Score=54.92 Aligned_cols=74 Identities=8% Similarity=0.026 Sum_probs=43.4
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16295 4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESI 83 (128)
Q Consensus 4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~ 83 (128)
|+.|..+.... +..+++..++..+..+ | ...+.++.+|..++++|+|++|..+++..++.+|++.++....-.
T Consensus 8 ~~~~~~~~~~~---~~~~A~~~~~~~~~~~-~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 80 (118)
T 1elw_A 8 KEKGNKALSVG---NIDDALQCYSEAIKLD-P---HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHcc---cHHHHHHHHHHHHHHC-C---CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 44555555443 3345666666666655 4 345666666666666666666666666666666666655444433
Q ss_pred H
Q psy16295 84 V 84 (128)
Q Consensus 84 I 84 (128)
+
T Consensus 81 ~ 81 (118)
T 1elw_A 81 A 81 (118)
T ss_dssp H
T ss_pred H
Confidence 3
No 17
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.47 E-value=1.7e-06 Score=57.34 Aligned_cols=60 Identities=10% Similarity=0.072 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16295 20 RKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESI 83 (128)
Q Consensus 20 ~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~ 83 (128)
.++++.++..++.+ | ...+.++.+|..++++|+|++|+.+++.+++++|+|..+......
T Consensus 82 ~~A~~~~~~~~~~~-~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 141 (148)
T 2dba_A 82 DKAETEASKAIEKD-G---GDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRN 141 (148)
T ss_dssp HHHHHHHHHHHHHT-S---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC-c---cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 34555555555544 3 235555555555555555555555555555555555555444433
No 18
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.44 E-value=3.2e-06 Score=54.15 Aligned_cols=54 Identities=11% Similarity=0.263 Sum_probs=25.8
Q ss_pred HHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHH
Q psy16295 21 KGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQ 78 (128)
Q Consensus 21 ~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~ 78 (128)
++++.++..+..+ | ...+.++.+|..++++|+|++|+.+++..++.+|++..+.
T Consensus 30 ~A~~~~~~~~~~~-~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 83 (131)
T 2vyi_A 30 AAVHFYGKAIELN-P---ANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAY 83 (131)
T ss_dssp HHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHcC-C---CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHH
Confidence 4444454444444 3 2344444555555555555555555555555555544433
No 19
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.43 E-value=4.5e-06 Score=53.13 Aligned_cols=65 Identities=17% Similarity=0.220 Sum_probs=56.4
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCC
Q psy16295 3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESEN 74 (128)
Q Consensus 3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N 74 (128)
-++.|.++.+.. +..++++.++..++.+ | ...+.++.+|..++++|+|++|+.+++..++++|+|
T Consensus 7 ~~~~g~~~~~~~---~~~~A~~~~~~al~~~-p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 7 QKEQGNSLFKQG---LYREAVHCYDQLITAQ-P---QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHHTTT---CHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHhcC-C---CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 356666666554 5568999999999988 6 568999999999999999999999999999999998
No 20
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.41 E-value=2.1e-06 Score=58.75 Aligned_cols=79 Identities=6% Similarity=-0.006 Sum_probs=68.1
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16295 4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESI 83 (128)
Q Consensus 4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~ 83 (128)
++++.++.+.. +..+++..++..+..+ | ...+.+|.+|..+.++|+|++|+.+++..+++.|+|++...++..
T Consensus 56 ~~lg~~~~~~g---~~~~A~~~~~~al~~~-p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 128 (142)
T 2xcb_A 56 LGLGACRQSLG---LYEQALQSYSYGALMD-I---NEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAAR 128 (142)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHHC-T---TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHH
T ss_pred HHHHHHHHHHh---hHHHHHHHHHHHHhcC-C---CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHH
Confidence 56677776655 4568999999999998 6 578899999999999999999999999999999999999988888
Q ss_pred HHHHHh
Q psy16295 84 VKKRME 89 (128)
Q Consensus 84 Ie~~i~ 89 (128)
+...+.
T Consensus 129 ~~~~l~ 134 (142)
T 2xcb_A 129 AGAMLE 134 (142)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876654
No 21
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.41 E-value=3.1e-06 Score=60.50 Aligned_cols=80 Identities=14% Similarity=0.246 Sum_probs=68.2
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16295 3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLES 82 (128)
Q Consensus 3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~ 82 (128)
.+++|.++.+.. +..+++..++..++.+ | ...+.+|.+|..++++|+|++|+.+++.+++++|+|..+.....
T Consensus 91 ~~~la~~~~~~~---~~~~A~~~~~~al~~~-p---~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 163 (198)
T 2fbn_A 91 NLNLATCYNKNK---DYPKAIDHASKVLKID-K---NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYE 163 (198)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHHS-T---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHhc---CHHHHHHHHHHHHHhC-c---ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 356777777654 4568999999999888 6 57899999999999999999999999999999999999998888
Q ss_pred HHHHHHh
Q psy16295 83 IVKKRME 89 (128)
Q Consensus 83 ~Ie~~i~ 89 (128)
.+..++.
T Consensus 164 ~~~~~~~ 170 (198)
T 2fbn_A 164 LCVNKLK 170 (198)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776654
No 22
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.40 E-value=1.7e-06 Score=60.17 Aligned_cols=66 Identities=11% Similarity=0.012 Sum_probs=38.8
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHH
Q psy16295 4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQ 76 (128)
Q Consensus 4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~Q 76 (128)
+++|+++.+.. +..++++.++..++.+ | ...+.+|.+|..++++|+|++|+.+++..|+++|+|..
T Consensus 49 ~~l~~~~~~~g---~~~~A~~~~~~al~~~-p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 49 SNRAAAYSASG---QHEKAAEDAELATVVD-P---KYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHHcc---CHHHHHHHHHHHHHhC-C---CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchH
Confidence 44555555543 2345666666666655 4 34566666666666666666666666666666666655
No 23
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.38 E-value=3.2e-06 Score=54.79 Aligned_cols=74 Identities=12% Similarity=0.075 Sum_probs=45.5
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16295 4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESI 83 (128)
Q Consensus 4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~ 83 (128)
++.|..+.+..+ ..++++.++..++.+ | ...+.++.+|..+.++|+|++|+.+++.+++.+|++.++....-.
T Consensus 20 ~~~~~~~~~~~~---~~~A~~~~~~al~~~-~---~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 20 KNKGNECFQKGD---YPQAMKHYTEAIKRN-P---KDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHTTC---SHHHHHHHHHHHTTC-T---TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCC---HHHHHHHHHHHHHcC-C---CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 455555554443 345666666666665 4 346666777777777777777777777777777766665544444
Q ss_pred H
Q psy16295 84 V 84 (128)
Q Consensus 84 I 84 (128)
+
T Consensus 93 ~ 93 (133)
T 2lni_A 93 A 93 (133)
T ss_dssp H
T ss_pred H
Confidence 3
No 24
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.38 E-value=2.3e-06 Score=59.66 Aligned_cols=83 Identities=7% Similarity=0.061 Sum_probs=65.0
Q ss_pred HHHHHHH-HhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHH
Q psy16295 3 QFNYSFC-LVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLE 81 (128)
Q Consensus 3 ~F~YAwa-Lv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk 81 (128)
.+++|.+ .....+. ...+++..++..++.+ | ...+.++.+|..++++|+|++|+.+++.+++.+|+|.....+.
T Consensus 81 ~~~la~~l~~~~~~~-~~~~A~~~~~~al~~~-p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 155 (177)
T 2e2e_A 81 YAALATVLYYQASQH-MTAQTRAMIDKALALD-S---NEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLV 155 (177)
T ss_dssp HHHHHHHHHHHTTTC-CCHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHH
T ss_pred HHHHHHHHHHhcCCc-chHHHHHHHHHHHHhC-C---CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 3566666 3343321 1257899999999888 6 5688999999999999999999999999999999998888888
Q ss_pred HHHHHHHhh
Q psy16295 82 SIVKKRMET 90 (128)
Q Consensus 82 ~~Ie~~i~k 90 (128)
..|+.....
T Consensus 156 ~~i~~~~~~ 164 (177)
T 2e2e_A 156 ESINMAKLL 164 (177)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888765544
No 25
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.37 E-value=2.4e-06 Score=61.39 Aligned_cols=75 Identities=11% Similarity=0.132 Sum_probs=62.8
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16295 3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLES 82 (128)
Q Consensus 3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~ 82 (128)
.|++|+++.+.. +..+++..++..+..+ | ...++++.+|..+.++|+|++|+.+++..++++|+|..+.--.-
T Consensus 39 ~~~lg~~~~~~g---~~~eA~~~~~~al~~~-P---~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg 111 (151)
T 3gyz_A 39 IYSYAYDFYNKG---RIEEAEVFFRFLCIYD-F---YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHhC-C---CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHH
Confidence 477788887765 4558999999999998 7 67899999999999999999999999999999999987765444
Q ss_pred HH
Q psy16295 83 IV 84 (128)
Q Consensus 83 ~I 84 (128)
.+
T Consensus 112 ~~ 113 (151)
T 3gyz_A 112 QC 113 (151)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 26
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.37 E-value=1.1e-06 Score=61.50 Aligned_cols=71 Identities=15% Similarity=0.203 Sum_probs=59.0
Q ss_pred CChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy16295 14 EFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIVKKRM 88 (128)
Q Consensus 14 ~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~Ie~~i 88 (128)
....++.++|+.++..+..+ | .....+|.||..|+++|+|++|+++++.+|+++|+|..+....-.+-.+.
T Consensus 8 ~~~~~~e~ai~~~~~a~~~~-p---~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 78 (150)
T 4ga2_A 8 RSKADVERYIASVQGSTPSP-R---QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELE 78 (150)
T ss_dssp CCHHHHHHHHHHHHHHSCSH-H---HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHcChHHHHHHHHHHhcccC-c---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 34678889999999988887 5 56777888999999999999999999999999999998887776665444
No 27
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.37 E-value=2.6e-06 Score=56.98 Aligned_cols=85 Identities=19% Similarity=0.201 Sum_probs=65.4
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHhhccCcc---ccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHH
Q psy16295 4 FNYSFCLVRSEFCADIRKGILLLEELFKTETED---IDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHL 80 (128)
Q Consensus 4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~---~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~L 80 (128)
|..+..+..- .+..+++.-++..++...++ ...+.+++++||.+++++|+|++|+.+.+.+|+.+|+|..+..-
T Consensus 9 ~~lG~~~~~~---~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n 85 (104)
T 2v5f_A 9 FELGKVAYTE---ADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (104)
T ss_dssp HHHHHHHHHT---TCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHc---cchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence 4555555543 45668888888877642110 13578999999999999999999999999999999999999777
Q ss_pred HHHHHHHHhhh
Q psy16295 81 ESIVKKRMETE 91 (128)
Q Consensus 81 k~~Ie~~i~kd 91 (128)
+..+++.+.++
T Consensus 86 ~~~~~~~~~~~ 96 (104)
T 2v5f_A 86 LKYFEYIMAKE 96 (104)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 77777766554
No 28
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.36 E-value=5.5e-06 Score=54.22 Aligned_cols=76 Identities=11% Similarity=0.079 Sum_probs=61.1
Q ss_pred hHHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCC---HHHH
Q psy16295 2 TQFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESEN---SQVQ 78 (128)
Q Consensus 2 ~~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N---~QA~ 78 (128)
+.|+.|..+....+ ..++++.++..++.. |+.....+.+|.+|..++++|+|++|+.+++.+++..|++ ..+.
T Consensus 4 ~~~~~a~~~~~~~~---~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 79 (129)
T 2xev_A 4 TAYNVAFDALKNGK---YDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGL 79 (129)
T ss_dssp CHHHHHHHHHHTTC---HHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHH
T ss_pred HHHHHHHHHHHhCC---HHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHH
Confidence 35788888887664 568999999999887 5212334899999999999999999999999999999999 4444
Q ss_pred HHH
Q psy16295 79 HLE 81 (128)
Q Consensus 79 ~Lk 81 (128)
-..
T Consensus 80 ~~l 82 (129)
T 2xev_A 80 LKL 82 (129)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 29
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.35 E-value=7.6e-06 Score=51.90 Aligned_cols=68 Identities=13% Similarity=0.309 Sum_probs=39.6
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHH
Q psy16295 4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQ 78 (128)
Q Consensus 4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~ 78 (128)
++.|.++.+.. +..++++++++.++.. | ...+.++.+|..+++.|+|++|+.+++.+++..|++.++.
T Consensus 13 ~~~~~~~~~~~---~~~~A~~~~~~~~~~~-~---~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 80 (125)
T 1na0_A 13 YNLGNAYYKQG---DYDEAIEYYQKALELD-P---NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAW 80 (125)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHHHC-c---CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHH
Confidence 34444444433 3345666666666555 3 3455666666666666666666666666666666665544
No 30
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.33 E-value=5.2e-06 Score=54.92 Aligned_cols=77 Identities=14% Similarity=0.116 Sum_probs=67.3
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcC------CCCHHHH
Q psy16295 5 NYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIE------SENSQVQ 78 (128)
Q Consensus 5 ~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~e------P~N~QA~ 78 (128)
++|.++.+.. +..++++.++..++.+ | ...+.++.+|..+.++|+|++|+.+++.+++++ |+|..+.
T Consensus 43 ~~a~~~~~~~---~~~~A~~~~~~al~~~-p---~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~ 115 (126)
T 3upv_A 43 NRAAALAKLM---SFPEAIADCNKAIEKD-P---NFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREID 115 (126)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHH
T ss_pred HHHHHHHHhc---CHHHHHHHHHHHHHhC-C---CcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHH
Confidence 5566666654 5668999999999998 6 578999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHH
Q psy16295 79 HLESIVKKRM 88 (128)
Q Consensus 79 ~Lk~~Ie~~i 88 (128)
.....+..++
T Consensus 116 ~~l~~~~~~l 125 (126)
T 3upv_A 116 QLYYKASQQR 125 (126)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhh
Confidence 9888887765
No 31
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.31 E-value=6.3e-06 Score=57.58 Aligned_cols=76 Identities=8% Similarity=0.090 Sum_probs=58.3
Q ss_pred hHHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHH
Q psy16295 2 TQFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLE 81 (128)
Q Consensus 2 ~~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk 81 (128)
+.|++|....+.. +..++++.++..++.+ | ...+.++.+|..+.++|+|++|+.+++..++++|+|..+..-.
T Consensus 33 ~~~~la~~y~~~~---~~~~A~~~~~~al~~~-p---~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 105 (150)
T 4ga2_A 33 KGFYFAKLYYEAK---EYDLAKKYICTYINVQ-E---RDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKI 105 (150)
T ss_dssp THHHHHHHHHHTT---CHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-C---CCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 3566777766654 4557888888888888 6 5788888888888888888888888888888888887765444
Q ss_pred HHH
Q psy16295 82 SIV 84 (128)
Q Consensus 82 ~~I 84 (128)
-.+
T Consensus 106 a~~ 108 (150)
T 4ga2_A 106 AEL 108 (150)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 32
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.30 E-value=5.1e-06 Score=58.22 Aligned_cols=79 Identities=9% Similarity=-0.018 Sum_probs=67.6
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16295 4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESI 83 (128)
Q Consensus 4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~ 83 (128)
+++|.++.... +..++++.++..+.-+ | ...+.+|.+|..+..+|+|++|+.+++..+++.|+|++...+++.
T Consensus 59 ~~lg~~~~~~g---~~~~A~~~~~~al~l~-p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 131 (148)
T 2vgx_A 59 LGLGACRQAMG---QYDLAIHSYSYGAVMD-I---XEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTR 131 (148)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHHS-T---TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHHHh---hHHHHHHHHHHHHhcC-C---CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHH
Confidence 56677776655 4558999999999988 6 578999999999999999999999999999999999999888887
Q ss_pred HHHHHh
Q psy16295 84 VKKRME 89 (128)
Q Consensus 84 Ie~~i~ 89 (128)
++..+.
T Consensus 132 ~~~~l~ 137 (148)
T 2vgx_A 132 VSSMLE 137 (148)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776654
No 33
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.29 E-value=9.8e-06 Score=51.06 Aligned_cols=76 Identities=12% Similarity=-0.024 Sum_probs=64.0
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16295 4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESI 83 (128)
Q Consensus 4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~ 83 (128)
+++|.++.+. .+..+++..++..++.+ | ...+.++.+|..+.++|+|++|+.+++..++.+|++..+......
T Consensus 42 ~~~a~~~~~~---~~~~~A~~~~~~~~~~~-~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 114 (118)
T 1elw_A 42 SNRSAAYAKK---GDYQKAYEDGCKTVDLK-P---DWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQN 114 (118)
T ss_dssp HHHHHHHHHH---TCHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HHHHHHHHhh---ccHHHHHHHHHHHHHhC-c---ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4566666654 45678999999999988 6 568999999999999999999999999999999999988877666
Q ss_pred HHH
Q psy16295 84 VKK 86 (128)
Q Consensus 84 Ie~ 86 (128)
+.+
T Consensus 115 ~~~ 117 (118)
T 1elw_A 115 MEA 117 (118)
T ss_dssp HHH
T ss_pred hhc
Confidence 543
No 34
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.29 E-value=5.7e-06 Score=66.94 Aligned_cols=80 Identities=20% Similarity=0.232 Sum_probs=69.9
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16295 3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLES 82 (128)
Q Consensus 3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~ 82 (128)
-+++|+++.+..+ ..++++.++..++.+ | ...+.+|.+|.+++++|+|++|+.+++..|+++|+|..+.....
T Consensus 276 ~~nla~~~~~~g~---~~~A~~~~~~al~~~-p---~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~ 348 (370)
T 1ihg_A 276 VLNIGACKLKMSD---WQGAVDSCLEALEID-P---SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELL 348 (370)
T ss_dssp HHHHHHHHHHTTC---HHHHHHHHHHHHTTC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHhccC---HHHHHHHHHHHHHhC-c---hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4688888887664 558999999999988 6 57899999999999999999999999999999999999988877
Q ss_pred HHHHHHh
Q psy16295 83 IVKKRME 89 (128)
Q Consensus 83 ~Ie~~i~ 89 (128)
.+..++.
T Consensus 349 ~~~~~~~ 355 (370)
T 1ihg_A 349 KVKQKIK 355 (370)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766654
No 35
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.29 E-value=1.8e-06 Score=60.32 Aligned_cols=55 Identities=15% Similarity=0.127 Sum_probs=26.3
Q ss_pred HHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHH
Q psy16295 21 KGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQH 79 (128)
Q Consensus 21 ~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~ 79 (128)
.+++.++...+.+ | ...+.++.+|..+.++|+|++|+.+++..++++|+|.++..
T Consensus 91 ~a~~~~~~a~~~~-~---~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 145 (184)
T 3vtx_A 91 AAIDALQRAIALN-T---VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQ 145 (184)
T ss_dssp HHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHhC-c---cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHH
Confidence 3444444444444 3 33444555555555555555555555555555555544433
No 36
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.28 E-value=1.4e-06 Score=57.09 Aligned_cols=71 Identities=14% Similarity=0.230 Sum_probs=59.3
Q ss_pred hHHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHH
Q psy16295 2 TQFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQH 79 (128)
Q Consensus 2 ~~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~ 79 (128)
+.|++|.++.... +..++++.++..++.+ | ...+.++.+|..+.++|+|++|+.+++..+++.|++.....
T Consensus 9 ~~~~lg~~~~~~g---~~~~A~~~~~~al~~~-p---~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~ 79 (100)
T 3ma5_A 9 TRYALAQEHLKHD---NASRALALFEELVETD-P---DYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKD 79 (100)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHHS-T---TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-C---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhH
Confidence 3577888888765 4568999999999998 6 57889999999999999999999999999999876544443
No 37
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.27 E-value=7.4e-06 Score=56.86 Aligned_cols=78 Identities=10% Similarity=0.021 Sum_probs=65.3
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16295 3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLES 82 (128)
Q Consensus 3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~ 82 (128)
-++.|..+.+.. +..++++.++..++.+ | ...++++.+|..++++|+|++|+.+++..++++|+|..+....-
T Consensus 14 ~~~~g~~~~~~g---~~~~A~~~~~~al~~~-p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 14 LKSEGNAAMARK---EYSKAIDLYTQALSIA-P---ANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHHS-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHhC-C---cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 356677777654 5568999999999998 6 57899999999999999999999999999999999988876665
Q ss_pred HHHHH
Q psy16295 83 IVKKR 87 (128)
Q Consensus 83 ~Ie~~ 87 (128)
.+-.+
T Consensus 87 ~~~~~ 91 (164)
T 3sz7_A 87 LARFD 91 (164)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55433
No 38
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.26 E-value=4.5e-06 Score=62.33 Aligned_cols=81 Identities=10% Similarity=0.161 Sum_probs=67.8
Q ss_pred HHHHHHHhccCCh-------hhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhh-----------chHHHHHHHH
Q psy16295 4 FNYSFCLVRSEFC-------ADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIK-----------EYTKSLKYCR 65 (128)
Q Consensus 4 F~YAwaLv~S~~~-------~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklg-----------dY~~A~~~~~ 65 (128)
++++-+|...... +.+.++|..|++-++-+ | ...|.+|.++.+++.+| +|++|+.+++
T Consensus 40 ~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P---~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~ 115 (158)
T 1zu2_A 40 TRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-P---KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQ 115 (158)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-c---CcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHH
Confidence 4566666655432 35779999999999999 7 68999999999999985 9999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHH
Q psy16295 66 AFLAIESENSQVQHLESIVKKRM 88 (128)
Q Consensus 66 ~lL~~eP~N~QA~~Lk~~Ie~~i 88 (128)
..|+++|+|...+.-.+++++.-
T Consensus 116 kAl~l~P~~~~y~~al~~~~ka~ 138 (158)
T 1zu2_A 116 QAVDEQPDNTHYLKSLEMTAKAP 138 (158)
T ss_dssp HHHHHCTTCHHHHHHHHHHHTHH
T ss_pred HHHHhCCCCHHHHHHHHHHHhCH
Confidence 99999999998888888777654
No 39
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.25 E-value=6.2e-06 Score=54.52 Aligned_cols=76 Identities=9% Similarity=0.071 Sum_probs=56.3
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16295 4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESI 83 (128)
Q Consensus 4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~ 83 (128)
++.|..+.+..+ ..+++..++..+..+ | ...+.++.+|..++++|+|++|+.+++.+++.+|++.++....-.
T Consensus 13 ~~~g~~~~~~~~---~~~A~~~~~~al~~~-~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 13 KEQGNRLFVGRK---YPEAAACYGRAITRN-P---LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp HHHHHHHHHTTC---HHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHhCc---HHHHHHHHHHHHhhC-c---CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 556666665543 457888888888777 5 467788888888888888888888888888888888877666555
Q ss_pred HHH
Q psy16295 84 VKK 86 (128)
Q Consensus 84 Ie~ 86 (128)
+-.
T Consensus 86 ~~~ 88 (137)
T 3q49_B 86 CQL 88 (137)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 40
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.25 E-value=1.1e-05 Score=60.06 Aligned_cols=80 Identities=13% Similarity=0.132 Sum_probs=66.5
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16295 4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESI 83 (128)
Q Consensus 4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~ 83 (128)
+++|+++.+.. +..++++.++..++.+ | ...+.++.+|..+.++|+|++|+.+++.+++++|+|.++......
T Consensus 276 ~~la~~~~~~~---~~~~A~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 348 (359)
T 3ieg_A 276 ERICHCFSKDE---KPVEAIRICSEVLQME-P---DNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEK 348 (359)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HHHHHHHHHcc---CHHHHHHHHHHHHHhC-c---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 34666776655 4568999999999887 6 568899999999999999999999999999999999999888777
Q ss_pred HHHHHhh
Q psy16295 84 VKKRMET 90 (128)
Q Consensus 84 Ie~~i~k 90 (128)
+...+.+
T Consensus 349 ~~~~~~~ 355 (359)
T 3ieg_A 349 AQRLLKQ 355 (359)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766654
No 41
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.24 E-value=8.7e-06 Score=64.28 Aligned_cols=80 Identities=9% Similarity=0.191 Sum_probs=69.3
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16295 3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLES 82 (128)
Q Consensus 3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~ 82 (128)
.+++|.++.+..+ ..++++.++..++.+ | ...+.+|.+|.+++++|+|++|+.+++.+|+++|+|..+.....
T Consensus 199 ~~nla~~~~~~g~---~~~A~~~~~~al~~~-p---~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~ 271 (336)
T 1p5q_A 199 HLNLAMCHLKLQA---FSAAIESCNKALELD-S---NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLA 271 (336)
T ss_dssp HHHHHHHHHHTTC---HHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHHHcCC---HHHHHHHHHHHHHhC-C---CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 4678888888764 558999999999998 6 57899999999999999999999999999999999999888777
Q ss_pred HHHHHHh
Q psy16295 83 IVKKRME 89 (128)
Q Consensus 83 ~Ie~~i~ 89 (128)
.+..++.
T Consensus 272 ~~~~~~~ 278 (336)
T 1p5q_A 272 VCQQRIR 278 (336)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7765543
No 42
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.24 E-value=1.2e-05 Score=51.46 Aligned_cols=82 Identities=12% Similarity=0.075 Sum_probs=61.5
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccc----hHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHH
Q psy16295 3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDR----KRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQ 78 (128)
Q Consensus 3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~----~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~ 78 (128)
.+++|.++.+.. +..+++..++..+... |+... ..++++.+|..++++|+|++|+.+++..++..| +....
T Consensus 41 ~~~la~~~~~~~---~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~ 115 (131)
T 1elr_A 41 ITNQAAVYFEKG---DYNKCRELCEKAIEVG-RENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVL 115 (131)
T ss_dssp HHHHHHHHHHHT---CHHHHHHHHHHHHHHH-HHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHH
T ss_pred HHHHHHHHHHhc---cHHHHHHHHHHHHhhc-cccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHH
Confidence 456677776654 4567888888888776 41001 178999999999999999999999999999999 57666
Q ss_pred HHHHHHHHHHh
Q psy16295 79 HLESIVKKRME 89 (128)
Q Consensus 79 ~Lk~~Ie~~i~ 89 (128)
.....+...+.
T Consensus 116 ~~l~~~~~~~~ 126 (131)
T 1elr_A 116 KKCQQAEKILK 126 (131)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66555555544
No 43
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.23 E-value=1.2e-05 Score=53.17 Aligned_cols=77 Identities=10% Similarity=0.261 Sum_probs=63.3
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCC-----CHHHHH
Q psy16295 5 NYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESE-----NSQVQH 79 (128)
Q Consensus 5 ~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~-----N~QA~~ 79 (128)
++|.++.+.. +..+++..++..++.+ | ...+.++.+|..++++|+|++|+.+++.+++++|+ +.....
T Consensus 48 ~l~~~~~~~~---~~~~A~~~~~~al~~~-p---~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~ 120 (137)
T 3q49_B 48 NRALCYLKMQ---QPEQALADCRRALELD-G---QSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPS 120 (137)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHH
T ss_pred HHHHHHHHhc---CHHHHHHHHHHHHHhC-c---hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHH
Confidence 4566666654 4558999999999988 6 57889999999999999999999999999999999 777776
Q ss_pred HHHHHHHHH
Q psy16295 80 LESIVKKRM 88 (128)
Q Consensus 80 Lk~~Ie~~i 88 (128)
....++.+.
T Consensus 121 ~l~~~~~~~ 129 (137)
T 3q49_B 121 ALRIAKKKR 129 (137)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666554
No 44
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.22 E-value=6.3e-06 Score=56.37 Aligned_cols=74 Identities=12% Similarity=0.112 Sum_probs=61.2
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16295 5 NYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIV 84 (128)
Q Consensus 5 ~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~I 84 (128)
+.+..+.+.. +..++|+.+++.++.+ | ...+.++.+|..++++|+|++|+.+++..++++|+|..+...+-.+
T Consensus 18 ~~G~~~~~~g---~~~~A~~~~~~al~~~-p---~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~ 90 (126)
T 4gco_A 18 NKGNEYFKKG---DYPTAMRHYNEAVKRD-P---ENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHcC---CHHHHHHHHHHHHHhC-C---CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 4444555543 5678999999999998 6 6789999999999999999999999999999999998876555444
Q ss_pred H
Q psy16295 85 K 85 (128)
Q Consensus 85 e 85 (128)
-
T Consensus 91 ~ 91 (126)
T 4gco_A 91 L 91 (126)
T ss_dssp H
T ss_pred H
Confidence 3
No 45
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.21 E-value=1.9e-05 Score=49.38 Aligned_cols=75 Identities=9% Similarity=0.146 Sum_probs=61.2
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCC--CHHHHHH
Q psy16295 3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESE--NSQVQHL 80 (128)
Q Consensus 3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~--N~QA~~L 80 (128)
.++.|..+.+.. +..+++..++..++.+ | ...+.++.+|..++++|+|++|+.+++..++..|+ +.++...
T Consensus 9 ~~~~~~~~~~~~---~~~~A~~~~~~a~~~~-~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 9 YYLEGVLQYDAG---NYTESIDLFEKAIQLD-P---EESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp GGGHHHHHHSSC---CHHHHHHHHHHHHHHC-C---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred HHHHHHHHHHhh---hHHHHHHHHHHHHHhC-c---CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 356677776654 4568999999999888 5 56889999999999999999999999999999999 8776554
Q ss_pred HHHH
Q psy16295 81 ESIV 84 (128)
Q Consensus 81 k~~I 84 (128)
...+
T Consensus 82 l~~~ 85 (112)
T 2kck_A 82 KADA 85 (112)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 46
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.21 E-value=3.3e-06 Score=55.39 Aligned_cols=68 Identities=9% Similarity=0.002 Sum_probs=46.9
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHH
Q psy16295 3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQV 77 (128)
Q Consensus 3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA 77 (128)
.+++|.++.+..+ ..+++..++..++.+ | ...+.++.+|..+.++|+|++|+.+++..+++.|++...
T Consensus 22 ~~~lg~~~~~~g~---~~~A~~~~~~al~~~-p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 89 (115)
T 2kat_A 22 RFTLGKTYAEHEQ---FDAALPHLRAALDFD-P---TYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQ 89 (115)
T ss_dssp HHHHHHHHHHTTC---HHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHccC---HHHHHHHHHHHHHHC-C---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccccH
Confidence 3566666665543 446777777777776 5 456777777777888888888888888777777755433
No 47
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.21 E-value=2.3e-05 Score=52.72 Aligned_cols=69 Identities=12% Similarity=0.160 Sum_probs=38.4
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHH
Q psy16295 5 NYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHL 80 (128)
Q Consensus 5 ~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~L 80 (128)
++|.++.+.. +..++++.++..++.+ | ...+.++.+|..+.++|+|++|+.+++.+++..|++..+...
T Consensus 52 ~~a~~~~~~~---~~~~A~~~~~~a~~~~-~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 120 (166)
T 1a17_A 52 NRSLAYLRTE---CYGYALGDATRAIELD-K---KYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMK 120 (166)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHHHHHcC---CHHHHHHHHHHHHHhC-c---ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 3444444433 3345566666655555 3 345566666666666666666666666666666666555433
No 48
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.20 E-value=6.7e-06 Score=67.78 Aligned_cols=81 Identities=12% Similarity=0.208 Sum_probs=66.7
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16295 3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLES 82 (128)
Q Consensus 3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~ 82 (128)
.+|+|+++.+..+ ..+++..++..++.+ | ...+.+|.+|.+++++|+|++|+.+++.+|+++|+|.++.....
T Consensus 320 ~~nla~~~~~~g~---~~~A~~~~~~al~~~-p---~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~ 392 (457)
T 1kt0_A 320 FLNLAMCYLKLRE---YTKAVECCDKALGLD-S---ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIS 392 (457)
T ss_dssp HHHHHHHHHHTTC---HHHHHHHHHHHHHHS-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHH
T ss_pred HHHHHHHHHHhcC---HHHHHHHHHHHHhcC-C---ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4688899888764 558999999999998 6 57899999999999999999999999999999999999988887
Q ss_pred HHHHHHhh
Q psy16295 83 IVKKRMET 90 (128)
Q Consensus 83 ~Ie~~i~k 90 (128)
.+..++.+
T Consensus 393 ~~~~~~~~ 400 (457)
T 1kt0_A 393 MCQKKAKE 400 (457)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77766543
No 49
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.19 E-value=1.7e-05 Score=51.29 Aligned_cols=75 Identities=16% Similarity=0.109 Sum_probs=62.7
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16295 4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESI 83 (128)
Q Consensus 4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~ 83 (128)
+++|.++.... +..++++.++..++.+ | ...+.++.+|..++++|+|++|+++++..++.+|++.++......
T Consensus 54 ~~la~~~~~~~---~~~~A~~~~~~a~~~~-~---~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 126 (133)
T 2lni_A 54 SNRAACYTKLL---EFQLALKDCEECIQLE-P---TFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQR 126 (133)
T ss_dssp HHHHHHHTTTT---CHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHH
T ss_pred HHHHHHHHHhc---cHHHHHHHHHHHHHhC-C---CchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 56666665544 5668999999999987 5 578899999999999999999999999999999999887766555
Q ss_pred HH
Q psy16295 84 VK 85 (128)
Q Consensus 84 Ie 85 (128)
+.
T Consensus 127 ~~ 128 (133)
T 2lni_A 127 CM 128 (133)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 50
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.19 E-value=8.4e-06 Score=58.46 Aligned_cols=74 Identities=9% Similarity=0.050 Sum_probs=60.8
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16295 3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLES 82 (128)
Q Consensus 3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~ 82 (128)
-++++.++.+.. +..++++.++..++-+ | ...+.+|.+|.++.++|+|++|+.+++..+++.|+.+....-++
T Consensus 73 ~~~lg~~~~~~g---~~~~Ai~~~~~al~l~-P---~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~~~~~A~~ 145 (151)
T 3gyz_A 73 IMGLAAIYQIKE---QFQQAADLYAVAFALG-K---NDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKAQS 145 (151)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHHS-S---SCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHc---cHHHHHHHHHHHHhhC-C---CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 356677776655 4558999999999998 7 57899999999999999999999999999999999874443333
Q ss_pred H
Q psy16295 83 I 83 (128)
Q Consensus 83 ~ 83 (128)
+
T Consensus 146 l 146 (151)
T 3gyz_A 146 Y 146 (151)
T ss_dssp H
T ss_pred H
Confidence 3
No 51
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.18 E-value=1.9e-05 Score=58.42 Aligned_cols=78 Identities=14% Similarity=0.168 Sum_probs=63.4
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhh----------hchHHHHHHHHHHHhcCCC
Q psy16295 4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARI----------KEYTKSLKYCRAFLAIESE 73 (128)
Q Consensus 4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~ykl----------gdY~~A~~~~~~lL~~eP~ 73 (128)
|+.|+++.+.. +..+++..++.+++.. |+.....+.+|.++..++++ |+|++|+.+++.+++..|+
T Consensus 152 ~~la~~~~~~g---~~~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 227 (261)
T 3qky_A 152 YEAARLYERRE---LYEAAAVTYEAVFDAY-PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPD 227 (261)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHcc---CHHHHHHHHHHHHHHC-CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCC
Confidence 77788887765 4568999999999887 63234789999999999988 9999999999999999999
Q ss_pred CHHHHHHHHHHH
Q psy16295 74 NSQVQHLESIVK 85 (128)
Q Consensus 74 N~QA~~Lk~~Ie 85 (128)
++.+..-...+.
T Consensus 228 ~~~~~~a~~~l~ 239 (261)
T 3qky_A 228 SPLLRTAEELYT 239 (261)
T ss_dssp CTHHHHHHHHHH
T ss_pred ChHHHHHHHHHH
Confidence 965554444443
No 52
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.17 E-value=6.8e-06 Score=55.69 Aligned_cols=67 Identities=15% Similarity=0.085 Sum_probs=52.3
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHH
Q psy16295 3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQ 76 (128)
Q Consensus 3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~Q 76 (128)
.+++|.++.+..+ ..+++..++..++.+ | ...+.++.+|..+.++|+|++|+.+++.+++.+|++.+
T Consensus 54 ~~~lg~~~~~~g~---~~~A~~~~~~al~l~-P---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 54 WRSLGLTQAENEK---DGLAIIALNHARMLD-P---KDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHTTC---HHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHcCC---HHHHHHHHHHHHHhC-C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCCC
Confidence 4667777776654 558999999999998 7 57889999999999999999999999999999999865
No 53
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=98.17 E-value=2e-05 Score=57.75 Aligned_cols=80 Identities=14% Similarity=0.123 Sum_probs=68.0
Q ss_pred hHHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHH
Q psy16295 2 TQFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLE 81 (128)
Q Consensus 2 ~~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk 81 (128)
..++++.++.+..+ ..+++..++..++.+ | ...+.++.+|..+.++|+|++|+.+++.+++.+|+|..+....
T Consensus 7 ~~~~lg~~~~~~g~---~~~A~~~~~~al~~~-p---~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~l 79 (217)
T 2pl2_A 7 NPLRLGVQLYALGR---YDAALTLFERALKEN-P---QDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVL 79 (217)
T ss_dssp HHHHHHHHHHHTTC---HHHHHHHHHHHHTTS-S---SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHcCC---HHHHHHHHHHHHHhC-C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 35778888888765 558999999999998 7 6899999999999999999999999999999999999887665
Q ss_pred HHHHHHH
Q psy16295 82 SIVKKRM 88 (128)
Q Consensus 82 ~~Ie~~i 88 (128)
-.+-.+.
T Consensus 80 g~~~~~~ 86 (217)
T 2pl2_A 80 SEAYVAL 86 (217)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5554433
No 54
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.15 E-value=1.5e-05 Score=58.00 Aligned_cols=72 Identities=15% Similarity=0.176 Sum_probs=62.4
Q ss_pred HHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16295 6 YSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIV 84 (128)
Q Consensus 6 YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~I 84 (128)
+|.++.+.. +..+++..++..++.+ | ...+.++.+|..++++|+|++|+.+++.+|+++|+|..+..-.-.+
T Consensus 60 lg~~~~~~g---~~~~A~~~~~~al~~~-p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~ 131 (208)
T 3urz_A 60 LALAYKKNR---NYDKAYLFYKELLQKA-P---NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNY 131 (208)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHHHC-C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 677777654 5568999999999998 7 6789999999999999999999999999999999999887655443
No 55
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.14 E-value=3.7e-05 Score=50.69 Aligned_cols=78 Identities=8% Similarity=0.008 Sum_probs=61.4
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16295 4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESI 83 (128)
Q Consensus 4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~ 83 (128)
+..|..+.... +..++++.++..++.+ |+.....+.++.+|..++++|+|++|+.+++..++.+|++.++....-.
T Consensus 32 ~~~a~~~~~~~---~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 32 RKEGNELFKCG---DYGGALAAYTQALGLD-ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHTTT---CHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHhC---CHHHHHHHHHHHHHHc-ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 45566666544 5668999999999987 5211238999999999999999999999999999999999877655544
Q ss_pred HH
Q psy16295 84 VK 85 (128)
Q Consensus 84 Ie 85 (128)
+-
T Consensus 108 ~~ 109 (148)
T 2dba_A 108 AL 109 (148)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 56
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.10 E-value=2.6e-05 Score=56.74 Aligned_cols=74 Identities=9% Similarity=0.222 Sum_probs=63.0
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHH----------------HHHHHhhhhchHHHHHHHHHH
Q psy16295 4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYY----------------LAIGNARIKEYTKSLKYCRAF 67 (128)
Q Consensus 4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYy----------------LAvg~yklgdY~~A~~~~~~l 67 (128)
|.-|..+.... +..+++..++..++.+ | ...+.+|+ +|..+.++|+|++|+.+++..
T Consensus 8 ~~~g~~~~~~g---~~~~A~~~~~~al~~~-p---~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 80 (208)
T 3urz_A 8 LQKVSAAIEAG---QNGQAVSYFRQTIALN-I---DRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKEL 80 (208)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHHC-H---HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHHhC-C---CChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 55666666554 5568999999999998 7 67889999 999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHH
Q psy16295 68 LAIESENSQVQHLESIV 84 (128)
Q Consensus 68 L~~eP~N~QA~~Lk~~I 84 (128)
|+++|+|..+....-.+
T Consensus 81 l~~~p~~~~~~~~lg~~ 97 (208)
T 3urz_A 81 LQKAPNNVDCLEACAEM 97 (208)
T ss_dssp HHHCTTCHHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHHH
Confidence 99999999887665554
No 57
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.09 E-value=5.1e-06 Score=65.80 Aligned_cols=79 Identities=11% Similarity=0.176 Sum_probs=52.7
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16295 3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLES 82 (128)
Q Consensus 3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~ 82 (128)
.+++|.++.+..+ ..+++..++..++.+ | ...+.+|.+|.+++++|+|++|+.+++.+|+++|+|..+.....
T Consensus 233 ~~nla~~~~~~g~---~~~A~~~~~~al~~~-p---~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~ 305 (338)
T 2if4_A 233 HLNIAACLIKLKR---YDEAIGHCNIVLTEE-E---KNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELR 305 (338)
T ss_dssp HHHHHHHHHTTTC---CHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------
T ss_pred HHHHHHHHHHcCC---HHHHHHHHHHHHHhC-C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 4678888877654 457999999999988 6 57899999999999999999999999999999999999988777
Q ss_pred HHHHHH
Q psy16295 83 IVKKRM 88 (128)
Q Consensus 83 ~Ie~~i 88 (128)
.+..+.
T Consensus 306 ~l~~~~ 311 (338)
T 2if4_A 306 ALAEQE 311 (338)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 664433
No 58
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.09 E-value=5e-06 Score=60.56 Aligned_cols=85 Identities=11% Similarity=-0.019 Sum_probs=55.8
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHhhccC--cc--ccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHH
Q psy16295 4 FNYSFCLVRSEFCADIRKGILLLEELFKTET--ED--IDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQH 79 (128)
Q Consensus 4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~--~~--~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~ 79 (128)
++.+.++....+..+..+++..+++.++... |+ .....++++.+|..+.+.|+|++|+.+++..|+++|+|.+|+.
T Consensus 180 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 259 (272)
T 3u4t_A 180 LWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAID 259 (272)
T ss_dssp HHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHH
Confidence 4556666655543333345555555444320 20 0113479999999999999999999999999999999999998
Q ss_pred HHHHHHHHH
Q psy16295 80 LESIVKKRM 88 (128)
Q Consensus 80 Lk~~Ie~~i 88 (128)
....+....
T Consensus 260 ~l~~~~~~~ 268 (272)
T 3u4t_A 260 GLKMKLEHH 268 (272)
T ss_dssp HHC------
T ss_pred Hhhhhhccc
Confidence 887776544
No 59
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.07 E-value=5.4e-05 Score=55.92 Aligned_cols=70 Identities=17% Similarity=0.247 Sum_probs=59.2
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHH
Q psy16295 3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQ 76 (128)
Q Consensus 3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~Q 76 (128)
.|+.|..+.+.. +..++++.++.+++.. |+.....+.+|.+|..++++|+|++|+.+++.+++..|+++.
T Consensus 18 ~~~~a~~~~~~g---~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 87 (261)
T 3qky_A 18 AFERAMEFYNQG---KYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR 87 (261)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred HHHHHHHHHHhC---CHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence 578888888765 4568999999999987 631233899999999999999999999999999999997754
No 60
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.06 E-value=5.5e-05 Score=48.18 Aligned_cols=78 Identities=8% Similarity=0.112 Sum_probs=64.8
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16295 4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESI 83 (128)
Q Consensus 4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~ 83 (128)
+++|+++.+.. +..++++.++..++.+ | ...+.++.+|..++++|+|++|+.+++.+++..|++..+......
T Consensus 50 ~~~a~~~~~~~---~~~~A~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 122 (131)
T 2vyi_A 50 CNRAAAYSKLG---NYAGAVQDCERAICID-P---AYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKI 122 (131)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHhh---chHHHHHHHHHHHhcC-c---cCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence 56677777655 4568999999999887 6 568899999999999999999999999999999999988766655
Q ss_pred HHHHH
Q psy16295 84 VKKRM 88 (128)
Q Consensus 84 Ie~~i 88 (128)
+..++
T Consensus 123 ~~~~~ 127 (131)
T 2vyi_A 123 AELKL 127 (131)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 61
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.05 E-value=5.7e-05 Score=47.72 Aligned_cols=75 Identities=13% Similarity=0.283 Sum_probs=62.3
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16295 4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESI 83 (128)
Q Consensus 4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~ 83 (128)
+++|.++.+.. +..+++..++..++.+ | ...+.++.+|..++++|+|++|+.+++.+++..|++.++......
T Consensus 47 ~~la~~~~~~~---~~~~A~~~~~~~~~~~-~---~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 119 (125)
T 1na0_A 47 YNLGNAYYKQG---DYDEAIEYYQKALELD-P---NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN 119 (125)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHhC---CHHHHHHHHHHHHHhC-C---ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 56677776654 4568999999999887 5 567899999999999999999999999999999999988766554
Q ss_pred HH
Q psy16295 84 VK 85 (128)
Q Consensus 84 Ie 85 (128)
+.
T Consensus 120 ~~ 121 (125)
T 1na0_A 120 AK 121 (125)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 62
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.04 E-value=8.8e-06 Score=53.88 Aligned_cols=68 Identities=9% Similarity=0.007 Sum_probs=55.2
Q ss_pred hhHHHHHHHHHHHhhcc--CccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16295 17 ADIRKGILLLEELFKTE--TEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIVKKR 87 (128)
Q Consensus 17 ~d~~~GI~LL~~l~~~~--~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~Ie~~ 87 (128)
.+..+++..++..++.+ .| ...+.++.+|..++++|+|++|+.+++..++.+|+|..+....-.+-.+
T Consensus 4 g~~~~A~~~~~~al~~~~~~p---~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 73 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGK---DLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYN 73 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHH---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCc---cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 34557899999999883 25 6789999999999999999999999999999999998877665555433
No 63
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.03 E-value=2.2e-05 Score=54.27 Aligned_cols=76 Identities=9% Similarity=0.058 Sum_probs=57.8
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHhhc------------------cCccccchHHHHHHHHHHHhhhhchHHHHHHHH
Q psy16295 4 FNYSFCLVRSEFCADIRKGILLLEELFKT------------------ETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCR 65 (128)
Q Consensus 4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~------------------~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~ 65 (128)
++.+..+.+.. +..+++..++..+.- + | ...++++.+|.+++++|+|++|+.+++
T Consensus 15 ~~~G~~~~~~~---~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~nla~~~~~~~~~~~A~~~~~ 87 (162)
T 3rkv_A 15 RQKGNELFVQK---DYKEAIDAYRDALTRLDTLILREKPGEPEWVELD-R---KNIPLYANMSQCYLNIGDLHEAEETSS 87 (162)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHH-H---THHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHH-H---HHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 34555555544 445677777766665 3 3 567899999999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHH
Q psy16295 66 AFLAIESENSQVQHLESIVKK 86 (128)
Q Consensus 66 ~lL~~eP~N~QA~~Lk~~Ie~ 86 (128)
.+|+++|+|..+.-.+-.+-.
T Consensus 88 ~al~~~p~~~~a~~~~g~~~~ 108 (162)
T 3rkv_A 88 EVLKREETNEKALFRRAKARI 108 (162)
T ss_dssp HHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHhcCCcchHHHHHHHHHHH
Confidence 999999999988766555543
No 64
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.03 E-value=2.2e-05 Score=49.10 Aligned_cols=66 Identities=9% Similarity=-0.124 Sum_probs=57.1
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccc--hHHHHHHHHHHHhhh-hchHHHHHHHHHHHhcCCCCH
Q psy16295 3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDR--KRDYLYYLAIGNARI-KEYTKSLKYCRAFLAIESENS 75 (128)
Q Consensus 3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~--~rd~LYyLAvg~ykl-gdY~~A~~~~~~lL~~eP~N~ 75 (128)
.+++|.++.+..+ ..++++.++..++.+ | . ..+.++.+|..+.++ |+|++|+++++.+++..|++.
T Consensus 43 ~~~~a~~~~~~~~---~~~A~~~~~~a~~~~-~---~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 43 WLMKGKALYNLER---YEEAVDCYNYVINVI-E---DEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHHHHHHHTTC---HHHHHHHHHHHHHTS-C---CTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHHHHccC---HHHHHHHHHHHHHhC-c---ccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 4677777777654 568999999999887 5 5 789999999999999 999999999999999999864
No 65
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.00 E-value=3.2e-05 Score=55.76 Aligned_cols=77 Identities=14% Similarity=0.185 Sum_probs=64.9
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccc--hHHHHHHHHHHHhhhhch------------------------
Q psy16295 4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDR--KRDYLYYLAIGNARIKEY------------------------ 57 (128)
Q Consensus 4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~--~rd~LYyLAvg~yklgdY------------------------ 57 (128)
++.+.++... .+..++++.++..++.+ | . ..+.++.++..++.+|+.
T Consensus 121 ~~~g~~~~~~---~~~~~A~~~~~~al~~~-p---~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 193 (228)
T 4i17_A 121 LKEGQKFQQA---GNIEKAEENYKHATDVT-S---KKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKAD 193 (228)
T ss_dssp HHHHHHHHHT---TCHHHHHHHHHHHTTSS-C---HHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHH
T ss_pred HHHhHHHHHh---ccHHHHHHHHHHHHhcC-C---CcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHH
Confidence 3445555443 45678999999999988 6 6 789999999999999999
Q ss_pred ---HHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16295 58 ---TKSLKYCRAFLAIESENSQVQHLESIVKKR 87 (128)
Q Consensus 58 ---~~A~~~~~~lL~~eP~N~QA~~Lk~~Ie~~ 87 (128)
++|+.+++..++++|+|..+..+...|+..
T Consensus 194 ~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~~ 226 (228)
T 4i17_A 194 AAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKAM 226 (228)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHh
Confidence 999999999999999999999988877654
No 66
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.98 E-value=7.2e-05 Score=50.19 Aligned_cols=74 Identities=8% Similarity=0.042 Sum_probs=62.2
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16295 4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESI 83 (128)
Q Consensus 4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~ 83 (128)
++.|+.+.... +..+++..++..+..+ | ...+.++.+|..++++|+|++|+.+++..++.+|++.++....-.
T Consensus 17 ~~~a~~~~~~~---~~~~A~~~~~~al~~~-~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~ 89 (166)
T 1a17_A 17 KTQANDYFKAK---DYENAIKFYSQAIELN-P---SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHHS-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHcc---CHHHHHHHHHHHHHhC-C---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 55666666654 5668999999999988 6 568999999999999999999999999999999999887655554
Q ss_pred H
Q psy16295 84 V 84 (128)
Q Consensus 84 I 84 (128)
+
T Consensus 90 ~ 90 (166)
T 1a17_A 90 S 90 (166)
T ss_dssp H
T ss_pred H
Confidence 4
No 67
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=97.96 E-value=2.2e-05 Score=55.86 Aligned_cols=54 Identities=9% Similarity=0.083 Sum_probs=27.6
Q ss_pred HHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHH
Q psy16295 21 KGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQ 78 (128)
Q Consensus 21 ~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~ 78 (128)
++++.+++.++.. | ...+.++.+|..+++.|+|++|+.+++.+++..|++..+.
T Consensus 143 ~A~~~~~~~~~~~-~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 196 (243)
T 2q7f_A 143 LALPYLQRAVELN-E---NDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAF 196 (243)
T ss_dssp HHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHhC-C---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH
Confidence 4555555555444 3 2344555555555555555555555555555555554443
No 68
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=97.96 E-value=6e-05 Score=55.15 Aligned_cols=75 Identities=7% Similarity=0.029 Sum_probs=65.0
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhh-----------hchHHHHHHHHHHHhcC
Q psy16295 3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARI-----------KEYTKSLKYCRAFLAIE 71 (128)
Q Consensus 3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~ykl-----------gdY~~A~~~~~~lL~~e 71 (128)
.+++|.++.+..+ ..+++..++..++.+ | ...+.++.++..+.++ |+|++|+..++..++.+
T Consensus 42 ~~~lg~~~~~~g~---~~~A~~~~~~al~~~-P---~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 114 (217)
T 2pl2_A 42 LYWLARTQLKLGL---VNPALENGKTLVART-P---RYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN 114 (217)
T ss_dssp HHHHHHHHHHTTC---HHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCC---HHHHHHHHHHHHHhC-C---CcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC
Confidence 4677888877654 458999999999998 7 6789999999999999 99999999999999999
Q ss_pred CCCHHHHHHHHHH
Q psy16295 72 SENSQVQHLESIV 84 (128)
Q Consensus 72 P~N~QA~~Lk~~I 84 (128)
|++.++....-.+
T Consensus 115 P~~~~~~~~lg~~ 127 (217)
T 2pl2_A 115 PRYAPLHLQRGLV 127 (217)
T ss_dssp TTCHHHHHHHHHH
T ss_pred cccHHHHHHHHHH
Confidence 9999887665544
No 69
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=97.96 E-value=4.3e-05 Score=55.97 Aligned_cols=70 Identities=10% Similarity=0.032 Sum_probs=58.9
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHH
Q psy16295 3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQ 76 (128)
Q Consensus 3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~Q 76 (128)
.|+.|..+.... +..+++..|+.+++.. |+.....+.+|.+|..++++|+|++|+..++.+++..|++..
T Consensus 7 ~~~~a~~~~~~g---~~~~A~~~~~~~~~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~ 76 (225)
T 2yhc_A 7 IYATAQQKLQDG---NWRQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN 76 (225)
T ss_dssp HHHHHHHHHHHT---CHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc
Confidence 467777777754 5668999999999886 522245789999999999999999999999999999999975
No 70
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=97.94 E-value=0.00011 Score=57.29 Aligned_cols=80 Identities=11% Similarity=0.121 Sum_probs=65.8
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16295 4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESI 83 (128)
Q Consensus 4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~ 83 (128)
+++++++.+.. +..++++.++..++.+ | ...+.++.+|..+.++|+|++|+.+++.+++++|+|..+......
T Consensus 299 ~~l~~~~~~~g---~~~~A~~~~~~a~~~~-p---~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 371 (450)
T 2y4t_A 299 ERICHCFSKDE---KPVEAIRVCSEVLQME-P---DNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEK 371 (450)
T ss_dssp HHHHHHHHTTT---CHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHHhC-c---ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 45667777655 4567899999988887 5 567999999999999999999999999999999999998888777
Q ss_pred HHHHHhh
Q psy16295 84 VKKRMET 90 (128)
Q Consensus 84 Ie~~i~k 90 (128)
+.....+
T Consensus 372 ~~~~~~~ 378 (450)
T 2y4t_A 372 AQRLLKQ 378 (450)
T ss_dssp HHHHHHH
T ss_pred HHHHhhc
Confidence 7655543
No 71
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=97.94 E-value=0.00013 Score=52.51 Aligned_cols=66 Identities=8% Similarity=0.054 Sum_probs=44.3
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHH
Q psy16295 4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQ 76 (128)
Q Consensus 4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~Q 76 (128)
++.|.++.+.. +..++++.++..++.+ | ...+.++.+|..++++|+|++|+.+++.+++++|+|..
T Consensus 46 ~~~~~~~~~~~---~~~~A~~~~~~al~~~-p---~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 111 (228)
T 4i17_A 46 YNCGVCADNIK---KYKEAADYFDIAIKKN-Y---NLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNAT 111 (228)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTT-C---SHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHhh---cHHHHHHHHHHHHHhC-c---chHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHH
Confidence 44555555544 3446777777777666 5 46677777777777777777777777777777777763
No 72
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=97.93 E-value=9.7e-05 Score=51.30 Aligned_cols=64 Identities=11% Similarity=0.071 Sum_probs=41.5
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCH
Q psy16295 5 NYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENS 75 (128)
Q Consensus 5 ~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~ 75 (128)
.+|+++.+.. +..++++.++..++.+ | ...+.++.+|..+.++|+|++|+++++..|+++|+|.
T Consensus 112 ~lg~~~~~~g---~~~~A~~~~~~~l~~~-p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 112 KLGLVYDSMG---EHDKAIEAYEKTISIK-P---GFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhC---CchhHHHHHHHHHHhc-c---hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCH
Confidence 4444444433 3446777777777666 5 4566777777777777777777777777777777654
No 73
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=97.92 E-value=8.4e-05 Score=61.25 Aligned_cols=85 Identities=9% Similarity=0.007 Sum_probs=68.6
Q ss_pred HHHHHHHHhcc-----CChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHH
Q psy16295 3 QFNYSFCLVRS-----EFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQV 77 (128)
Q Consensus 3 ~F~YAwaLv~S-----~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA 77 (128)
.+++|+++... .++.+..++++.++..++.+ |......+.++.+|..++++|+|++|+.+++..++++|+|.++
T Consensus 216 ~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a 294 (474)
T 4abn_A 216 WYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEP 294 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 35666666654 45588899999999999987 5111578999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHH
Q psy16295 78 QHLESIVKKRM 88 (128)
Q Consensus 78 ~~Lk~~Ie~~i 88 (128)
......+...+
T Consensus 295 ~~~l~~~~~~l 305 (474)
T 4abn_A 295 QQREQQLLEFL 305 (474)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 76665555444
No 74
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=97.92 E-value=9.3e-05 Score=51.58 Aligned_cols=71 Identities=13% Similarity=0.082 Sum_probs=44.4
Q ss_pred HHHHHHHhcc-CChhhHHHHHHHHHHHhh--ccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHH
Q psy16295 4 FNYSFCLVRS-EFCADIRKGILLLEELFK--TETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHL 80 (128)
Q Consensus 4 F~YAwaLv~S-~~~~d~~~GI~LL~~l~~--~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~L 80 (128)
+++|.++... . +..++++.++..++ .. | ...+.++.+|..+.+.|+|++|+.+++.+++..|++..+...
T Consensus 80 ~~l~~~~~~~~~---~~~~A~~~~~~~~~~~~~-~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 152 (225)
T 2vq2_A 80 NNYGWFLCGRLN---RPAESMAYFDKALADPTY-P---TPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKE 152 (225)
T ss_dssp HHHHHHHHTTTC---CHHHHHHHHHHHHTSTTC-S---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHHHHHHhcC---cHHHHHHHHHHHHcCcCC-c---chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHH
Confidence 4555555554 3 34466677776666 22 2 446667777777777777777777777777777776655444
Q ss_pred H
Q psy16295 81 E 81 (128)
Q Consensus 81 k 81 (128)
.
T Consensus 153 l 153 (225)
T 2vq2_A 153 L 153 (225)
T ss_dssp H
T ss_pred H
Confidence 3
No 75
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=97.91 E-value=9.7e-05 Score=52.57 Aligned_cols=76 Identities=8% Similarity=0.046 Sum_probs=58.1
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16295 3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLES 82 (128)
Q Consensus 3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~ 82 (128)
.+++|+.+.+.. +..++++.++..++.+ | ...+.++.+|..++++|+|++|+.+++..++..|++.++.....
T Consensus 142 ~~~~~~~~~~~~---~~~~A~~~~~~a~~~~-~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~ 214 (258)
T 3uq3_A 142 ARLEGKEYFTKS---DWPNAVKAYTEMIKRA-P---EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKA 214 (258)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHhc---CHHHHHHHHHHHHhcC-c---ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 346666666654 4557888888888887 5 46788888999999999999999999999999998877655444
Q ss_pred HHH
Q psy16295 83 IVK 85 (128)
Q Consensus 83 ~Ie 85 (128)
.+-
T Consensus 215 ~~~ 217 (258)
T 3uq3_A 215 TAQ 217 (258)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 76
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=97.91 E-value=1.5e-05 Score=53.70 Aligned_cols=77 Identities=8% Similarity=0.155 Sum_probs=60.3
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16295 3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLES 82 (128)
Q Consensus 3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~ 82 (128)
.+++|+.+.+.. +..++++.++..++.. | ...+.++.+|..++++|+|++|+.+++.+++..|++..+.....
T Consensus 79 ~~~~a~~~~~~~---~~~~A~~~~~~~~~~~-~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 151 (186)
T 3as5_A 79 ATVLGLTYVQVQ---KYDLAVPLLIKVAEAN-P---INFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIA 151 (186)
T ss_dssp HHHHHHHHHHHT---CHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHhc---CHHHHHHHHHHHHhcC-c---HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHH
Confidence 356677776654 4557888888888887 5 46788899999999999999999999999999999987766555
Q ss_pred HHHH
Q psy16295 83 IVKK 86 (128)
Q Consensus 83 ~Ie~ 86 (128)
.+-.
T Consensus 152 ~~~~ 155 (186)
T 3as5_A 152 FSYE 155 (186)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 77
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.91 E-value=6.7e-05 Score=48.94 Aligned_cols=61 Identities=15% Similarity=0.045 Sum_probs=52.5
Q ss_pred HHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16295 21 KGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIVK 85 (128)
Q Consensus 21 ~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~Ie 85 (128)
++++.++..++.+ | ...+.++.+|..+++.|+|++|+.+++.+++.+|++..+....-.+-
T Consensus 3 ~a~~~~~~al~~~-p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 63 (115)
T 2kat_A 3 AITERLEAMLAQG-T---DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTL 63 (115)
T ss_dssp CHHHHHHHHHTTT-C---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-C---CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 4678889999888 6 56899999999999999999999999999999999988765554443
No 78
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=97.89 E-value=5.2e-05 Score=54.00 Aligned_cols=73 Identities=15% Similarity=0.104 Sum_probs=62.5
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcC------CCCHH
Q psy16295 3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIE------SENSQ 76 (128)
Q Consensus 3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~e------P~N~Q 76 (128)
.+++|.++.+.. +..+++..++..++.+ | ...+.++.+|..+.++|+|++|+.+++..+++. |+|..
T Consensus 176 ~~~l~~~~~~~~---~~~~A~~~~~~al~~~-~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~ 248 (258)
T 3uq3_A 176 YSNRAAALAKLM---SFPEAIADCNKAIEKD-P---NFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSARE 248 (258)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHH
T ss_pred HHHHHHHHHHhC---CHHHHHHHHHHHHHhC-H---HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHH
Confidence 456777777765 4568999999999988 6 578999999999999999999999999999999 99988
Q ss_pred HHHHHH
Q psy16295 77 VQHLES 82 (128)
Q Consensus 77 A~~Lk~ 82 (128)
+..+..
T Consensus 249 ~~~~l~ 254 (258)
T 3uq3_A 249 IDQLYY 254 (258)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776654
No 79
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=97.85 E-value=9.4e-05 Score=46.88 Aligned_cols=74 Identities=12% Similarity=0.240 Sum_probs=59.5
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16295 4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESI 83 (128)
Q Consensus 4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~ 83 (128)
+++|..+.... +..+++..++..++.. | ...+.++.++..+++.|+|++|+++++.+++..|++.++....-.
T Consensus 39 ~~~a~~~~~~~---~~~~A~~~~~~~~~~~-~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 111 (136)
T 2fo7_A 39 YNLGNAYYKQG---DYDEAIEYYQKALELD-P---RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGN 111 (136)
T ss_dssp HHHHHHHHHHT---CHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHhc---CHHHHHHHHHHHHHHC-C---CchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 45666666554 5668999999988887 5 467889999999999999999999999999999999876655443
Q ss_pred H
Q psy16295 84 V 84 (128)
Q Consensus 84 I 84 (128)
+
T Consensus 112 ~ 112 (136)
T 2fo7_A 112 A 112 (136)
T ss_dssp H
T ss_pred H
Confidence 3
No 80
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.84 E-value=2.3e-05 Score=53.35 Aligned_cols=67 Identities=9% Similarity=0.174 Sum_probs=56.6
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHH
Q psy16295 4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQV 77 (128)
Q Consensus 4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA 77 (128)
.+.+..+.+. .+..++|+.++..++-+ | ...++++.+|..++++|+|++|+.+++..|+++|++...
T Consensus 12 ~~lG~~~~~~---~~~~~A~~~y~~Al~~~-p---~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 78 (127)
T 4gcn_A 12 KDLGNAAYKQ---KDFEKAHVHYDKAIELD-P---SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRAD 78 (127)
T ss_dssp HHHHHHHHHT---TCHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHc---CCHHHHHHHHHHHHHhC-C---CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchh
Confidence 3455555554 45678999999999988 7 578999999999999999999999999999999988654
No 81
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=97.83 E-value=0.00016 Score=53.59 Aligned_cols=75 Identities=7% Similarity=0.035 Sum_probs=56.0
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16295 3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLES 82 (128)
Q Consensus 3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~ 82 (128)
.|..|+.+.+.. +..++++.++..++.+ | ...+.++.+|..++++|+|++|+.+++.+++.+|++..+....-
T Consensus 6 ~~~~~~~~~~~g---~~~~A~~~~~~~l~~~-p---~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 78 (359)
T 3ieg_A 6 HLELGKKLLAAG---QLADALSQFHAAVDGD-P---DNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRG 78 (359)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHhhC-c---ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 456677776655 4457888888888877 5 46788888888888888888888888888888888876655444
Q ss_pred HH
Q psy16295 83 IV 84 (128)
Q Consensus 83 ~I 84 (128)
.+
T Consensus 79 ~~ 80 (359)
T 3ieg_A 79 HL 80 (359)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 82
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=97.83 E-value=0.00019 Score=45.40 Aligned_cols=73 Identities=12% Similarity=0.243 Sum_probs=60.1
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16295 3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLES 82 (128)
Q Consensus 3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~ 82 (128)
.++.|..+.+.. +..+++.++++.++.+ | ...+.++.+|..+++.|+|++|+.+++.+++..|++..+.....
T Consensus 4 ~~~l~~~~~~~~---~~~~A~~~~~~~~~~~-~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 76 (136)
T 2fo7_A 4 WYNLGNAYYKQG---DYDEAIEYYQKALELD-P---RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLG 76 (136)
T ss_dssp HHHHHHHHHHHT---CHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHcC---cHHHHHHHHHHHHHcC-C---cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHH
Confidence 356667766654 5668999999999887 5 46788999999999999999999999999999999987655443
No 83
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=97.81 E-value=0.00023 Score=47.77 Aligned_cols=70 Identities=13% Similarity=0.201 Sum_probs=43.3
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHH
Q psy16295 4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHL 80 (128)
Q Consensus 4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~L 80 (128)
+.+|.++.+.. +..++++.++..++.. | ...++++.+|..+++.|+|++|+.+++.+++..|++..+...
T Consensus 46 ~~~~~~~~~~~---~~~~A~~~~~~~~~~~-~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 115 (186)
T 3as5_A 46 LHLGIAYVKTG---AVDRGTELLERSLADA-P---DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFR 115 (186)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHhcC-C---CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHH
Confidence 34455555443 3345666666666665 4 356666677777777777777777777777777776655433
No 84
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=97.80 E-value=8.8e-05 Score=54.73 Aligned_cols=75 Identities=4% Similarity=0.050 Sum_probs=63.4
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16295 3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLES 82 (128)
Q Consensus 3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~ 82 (128)
.+++|+++.+.. +..++++.++..++.+ | ...+.++.+|..+.++|+|++|+.+++.+++++|+|..+.....
T Consensus 239 ~~~la~~~~~~g---~~~~A~~~~~~a~~~~-~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 311 (330)
T 3hym_B 239 LNNLGHVCRKLK---KYAEALDYHRQALVLI-P---QNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLG 311 (330)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHHS-T---TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHH
T ss_pred HHHHHHHHHHhc---CHHHHHHHHHHHHhhC-c---cchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHH
Confidence 356777776655 4568999999999888 6 57899999999999999999999999999999999998877665
Q ss_pred HH
Q psy16295 83 IV 84 (128)
Q Consensus 83 ~I 84 (128)
.+
T Consensus 312 ~~ 313 (330)
T 3hym_B 312 HC 313 (330)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 85
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.80 E-value=0.00013 Score=46.57 Aligned_cols=64 Identities=13% Similarity=0.163 Sum_probs=54.7
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCC
Q psy16295 4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESEN 74 (128)
Q Consensus 4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N 74 (128)
++.|..+.... +..+++..++..+..+ | ...++++.+|..++++|+|++|..+++.+++..|++
T Consensus 8 ~~l~~~~~~~~---~~~~A~~~~~~a~~~~-~---~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 71 (131)
T 1elr_A 8 KELGNDAYKKK---DFDTALKHYDKAKELD-P---TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN 71 (131)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhc---CHHHHHHHHHHHHhcC-C---ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc
Confidence 45666665544 5668999999999988 5 568999999999999999999999999999999877
No 86
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.80 E-value=0.0002 Score=50.88 Aligned_cols=76 Identities=14% Similarity=0.142 Sum_probs=59.9
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccch---------------HHHHHHHHHHHhhhhchHHHHHHHHHHH
Q psy16295 4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRK---------------RDYLYYLAIGNARIKEYTKSLKYCRAFL 68 (128)
Q Consensus 4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~---------------rd~LYyLAvg~yklgdY~~A~~~~~~lL 68 (128)
++.|..+.+.. +..++++.+++.++.. | ... .++++.+|..++++|+|++|+.+++.++
T Consensus 42 ~~~g~~~~~~~---~~~~A~~~~~~al~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 115 (198)
T 2fbn_A 42 KEEGNEFFKKN---EINEAIVKYKEALDFF-I--HTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL 115 (198)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTT-T--TCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHHHH-h--cccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 45566666554 5568999999988865 3 122 3899999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHH
Q psy16295 69 AIESENSQVQHLESIVK 85 (128)
Q Consensus 69 ~~eP~N~QA~~Lk~~Ie 85 (128)
+++|++.++.-..-.+-
T Consensus 116 ~~~p~~~~~~~~lg~~~ 132 (198)
T 2fbn_A 116 KIDKNNVKALYKLGVAN 132 (198)
T ss_dssp HHSTTCHHHHHHHHHHH
T ss_pred HhCcccHHHHHHHHHHH
Confidence 99999988766555443
No 87
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=97.79 E-value=0.00022 Score=49.68 Aligned_cols=72 Identities=15% Similarity=0.186 Sum_probs=55.7
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHH
Q psy16295 3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLE 81 (128)
Q Consensus 3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk 81 (128)
.+..|.++.+.. +..++++.++..++.+ | ...+.++.+|..+.+.|+|++|+.+++.+++.+|++..+....
T Consensus 11 ~~~~~~~~~~~~---~~~~A~~~~~~~~~~~-~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 82 (225)
T 2vq2_A 11 KTQLAMEYMRGQ---DYRQATASIEDALKSD-P---KNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNY 82 (225)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHh---hHHHHHHHHHHHHHhC-c---cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH
Confidence 355666766655 4557888888888877 5 4678888899999999999999999999999999887665443
No 88
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=97.78 E-value=0.00025 Score=51.82 Aligned_cols=78 Identities=5% Similarity=0.091 Sum_probs=62.3
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhh------------------hhchHHHHHHH
Q psy16295 3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNAR------------------IKEYTKSLKYC 64 (128)
Q Consensus 3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yk------------------lgdY~~A~~~~ 64 (128)
.|+.|+++.+.. +..++|+.++.+++.. |+.....+.+|+++..+++ +|++++|+..+
T Consensus 44 ~~~lg~~~~~~~---~~~~A~~~~~~~l~~~-P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 119 (225)
T 2yhc_A 44 QLDLIYAYYKNA---DLPLAQAAIDRFIRLN-PTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDF 119 (225)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHH
T ss_pred HHHHHHHHHhcC---CHHHHHHHHHHHHHHC-cCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHH
Confidence 567777887765 4568999999999887 6322345789999999997 57999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHH
Q psy16295 65 RAFLAIESENSQVQHLESIV 84 (128)
Q Consensus 65 ~~lL~~eP~N~QA~~Lk~~I 84 (128)
+.+++..|++..+...+..+
T Consensus 120 ~~~l~~~P~~~~a~~a~~~l 139 (225)
T 2yhc_A 120 SKLVRGYPNSQYTTDATKRL 139 (225)
T ss_dssp HHHHTTCTTCTTHHHHHHHH
T ss_pred HHHHHHCcCChhHHHHHHHH
Confidence 99999999999876554443
No 89
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.77 E-value=0.00015 Score=51.24 Aligned_cols=70 Identities=19% Similarity=0.139 Sum_probs=55.9
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccc-------------cchHHHHHHHHHHHhhhhchHHHHHHHHHHHh
Q psy16295 3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDI-------------DRKRDYLYYLAIGNARIKEYTKSLKYCRAFLA 69 (128)
Q Consensus 3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~-------------~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~ 69 (128)
.+++|.++.+.. +..++++.++..++.. |+. ....+.++.+|..++++|+|++|+.+++..++
T Consensus 74 ~~~lg~~~~~~~---~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 74 YFQRGMLYYQTE---KYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcc---cHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 467777777765 4557889999888865 310 12459999999999999999999999999999
Q ss_pred cCCCCHH
Q psy16295 70 IESENSQ 76 (128)
Q Consensus 70 ~eP~N~Q 76 (128)
+.|++..
T Consensus 150 ~~p~~~~ 156 (213)
T 1hh8_A 150 MKSEPRH 156 (213)
T ss_dssp TCCSGGG
T ss_pred cCccccc
Confidence 9998865
No 90
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=97.77 E-value=0.0001 Score=56.98 Aligned_cols=68 Identities=7% Similarity=0.006 Sum_probs=57.5
Q ss_pred HHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHH
Q psy16295 7 SFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQH 79 (128)
Q Consensus 7 AwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~ 79 (128)
+|.-+.. ...+..+++.++++++... | ...+.++.+|+.+.++|+|++|..+++.+|+.+|+|..+..
T Consensus 171 a~~~l~~-~~~~~~eA~~~~~~~l~~~-p---~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~ 238 (291)
T 3mkr_A 171 AWVSLAA-GGEKLQDAYYIFQEMADKC-S---PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLI 238 (291)
T ss_dssp HHHHHHH-CTTHHHHHHHHHHHHHHHS-C---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHh-CchHHHHHHHHHHHHHHhC-C---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 4544433 2467889999999999997 6 57889999999999999999999999999999999998753
No 91
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=97.76 E-value=0.00025 Score=51.18 Aligned_cols=68 Identities=6% Similarity=-0.057 Sum_probs=46.7
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHH
Q psy16295 4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQ 78 (128)
Q Consensus 4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~ 78 (128)
+++|.++.+.. +..++++.++..++.+ | ...+.++.+|..++++|+|++|+.+++.+++..|++....
T Consensus 81 ~~la~~~~~~~---~~~~A~~~~~~al~~~-~---~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 148 (275)
T 1xnf_A 81 NYLGIYLTQAG---NFDAAYEAFDSVLELD-P---TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRS 148 (275)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHHC-T---TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHcc---CHHHHHHHHHHHHhcC-c---cccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHH
Confidence 45555555543 4456777777777766 4 4567777777777777777777777777777777776443
No 92
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=97.75 E-value=0.00034 Score=50.26 Aligned_cols=72 Identities=14% Similarity=0.111 Sum_probs=45.0
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHhh--ccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHH
Q psy16295 4 FNYSFCLVRSEFCADIRKGILLLEELFK--TETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLE 81 (128)
Q Consensus 4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~--~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk 81 (128)
+++|+++.... +..++++.++..++ .. | ...+.++.+|..++++|+|++|+.+++.+++..|++.++....
T Consensus 109 ~~la~~~~~~g---~~~~A~~~~~~~~~~~~~-~---~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 181 (252)
T 2ho1_A 109 NNYGGFLYEQK---RYEEAYQRLLEASQDTLY-P---ERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEM 181 (252)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHTTCTTC-T---THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHH
T ss_pred HHHHHHHHHHh---HHHHHHHHHHHHHhCccC-c---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 45566665543 34466677776666 33 3 4566666777777777777777777777777777766655443
Q ss_pred H
Q psy16295 82 S 82 (128)
Q Consensus 82 ~ 82 (128)
-
T Consensus 182 a 182 (252)
T 2ho1_A 182 A 182 (252)
T ss_dssp H
T ss_pred H
Confidence 3
No 93
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.72 E-value=0.00028 Score=49.73 Aligned_cols=51 Identities=8% Similarity=0.029 Sum_probs=26.9
Q ss_pred HHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCH
Q psy16295 21 KGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENS 75 (128)
Q Consensus 21 ~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~ 75 (128)
++++.++..++.+ | ...+.++.+|..++++|+|++|+.+++..++..|+|.
T Consensus 55 ~A~~~~~~al~~~-~---~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~ 105 (213)
T 1hh8_A 55 EAEKAFTRSINRD-K---HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQ 105 (213)
T ss_dssp HHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCS
T ss_pred HHHHHHHHHHHhC-c---cchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcc
Confidence 4555555555544 3 3345555555555555555555555555555555544
No 94
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=97.72 E-value=0.00026 Score=51.14 Aligned_cols=74 Identities=7% Similarity=0.032 Sum_probs=59.9
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16295 4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESI 83 (128)
Q Consensus 4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~ 83 (128)
++.|.++.... +..++++.++..++.+ | ...+.++.+|..++++|+|++|+++++.+++.+|++..+....-.
T Consensus 47 ~~l~~~~~~~~---~~~~A~~~~~~al~~~-~---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~ 119 (275)
T 1xnf_A 47 YERGVLYDSLG---LRALARNDFSQALAIR-P---DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI 119 (275)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHHC-C---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred HHHHHHHHHcc---cHHHHHHHHHHHHHcC-C---CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHH
Confidence 45566666554 4568999999999888 6 578899999999999999999999999999999999876655444
Q ss_pred H
Q psy16295 84 V 84 (128)
Q Consensus 84 I 84 (128)
+
T Consensus 120 ~ 120 (275)
T 1xnf_A 120 A 120 (275)
T ss_dssp H
T ss_pred H
Confidence 3
No 95
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=97.72 E-value=0.00016 Score=58.52 Aligned_cols=73 Identities=12% Similarity=-0.017 Sum_probs=62.4
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16295 4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESI 83 (128)
Q Consensus 4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~ 83 (128)
+++++++.+.. +..++++.+++.++.+ | ...+.++.++..+.+.|++++|+++++.+++++|+|..+..+...
T Consensus 520 ~~l~~~~~~~g---~~~~A~~~~~~~~~~~-p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~ 592 (597)
T 2xpi_A 520 ANLGHAYRKLK---MYDAAIDALNQGLLLS-T---NDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKR 592 (597)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHHS-S---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHhc---CHHHHHHHHHHHHHhC-C---CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 56677777754 4568999999999888 6 568999999999999999999999999999999999988776543
No 96
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.70 E-value=0.00014 Score=54.07 Aligned_cols=80 Identities=6% Similarity=0.096 Sum_probs=63.5
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHhhc-------cCccccchHHHH----HHHHHHHhhhhchHHHHHHHHHHHhcCC
Q psy16295 4 FNYSFCLVRSEFCADIRKGILLLEELFKT-------ETEDIDRKRDYL----YYLAIGNARIKEYTKSLKYCRAFLAIES 72 (128)
Q Consensus 4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~-------~~~~~~~~rd~L----YyLAvg~yklgdY~~A~~~~~~lL~~eP 72 (128)
.|.+.+|.+-.. ..++|+-.+..++- + | ...+.| |-.++++.++|+|++|+.+++..|+++|
T Consensus 61 ~n~g~al~~Lgr---~~eAl~~~~kAL~l~n~~~e~~-p---d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p 133 (159)
T 2hr2_A 61 AGLAEALAGLRS---FDEALHSADKALHYFNRRGELN-Q---DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 133 (159)
T ss_dssp HHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHCCTT-S---THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCC---HHHHHHHHHHHHHhhhccccCC-C---chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 345556665543 44677777777776 8 6 578899 9999999999999999999999999999
Q ss_pred CCH----HHHHHHHHHHHHHhh
Q psy16295 73 ENS----QVQHLESIVKKRMET 90 (128)
Q Consensus 73 ~N~----QA~~Lk~~Ie~~i~k 90 (128)
++. +-..+++.|+++.+|
T Consensus 134 ~d~~~~~~~~~~~~~~~~~~~k 155 (159)
T 2hr2_A 134 ERKGETPGKERMMEVAIDRIAQ 155 (159)
T ss_dssp HCCSCCTTHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHH
Confidence 984 566778888877766
No 97
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=97.70 E-value=0.00023 Score=54.33 Aligned_cols=74 Identities=14% Similarity=0.203 Sum_probs=62.8
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16295 3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLES 82 (128)
Q Consensus 3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~ 82 (128)
-|+.|..+.+.. +..+++++++..++.+ | ...+.++.++..++++|+|++|+.+++..++.+|++..+....-
T Consensus 68 ~~~~~~~~~~~g---~~~~A~~~~~~al~~~-p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 140 (365)
T 4eqf_A 68 AFEEGLKRLKEG---DLPVTILFMEAAILQD-P---GDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALA 140 (365)
T ss_dssp HHHHHHHHHHHT---CHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHHhC-c---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 467778887765 5668999999999988 6 57899999999999999999999999999999999987655443
Q ss_pred H
Q psy16295 83 I 83 (128)
Q Consensus 83 ~ 83 (128)
.
T Consensus 141 ~ 141 (365)
T 4eqf_A 141 V 141 (365)
T ss_dssp H
T ss_pred H
Confidence 3
No 98
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.70 E-value=0.00022 Score=59.32 Aligned_cols=74 Identities=11% Similarity=0.103 Sum_probs=43.1
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16295 4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESI 83 (128)
Q Consensus 4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~ 83 (128)
+++|.++.+.. +..++++.++..++.+ | ...+.++.+|..++++|+|++|+++++..|+++|++.++......
T Consensus 44 ~~lg~~~~~~g---~~~~A~~~~~~al~l~-p---~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~ 116 (477)
T 1wao_1 44 GNRSLAYLRTE---CYGYALGDATRAIELD-K---KYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQE 116 (477)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHSC-T---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHH
T ss_pred HHHHHHHHHhc---CHHHHHHHHHHHHHhC-C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 44555555443 3345666666666655 4 345666666666666666666666666666666666655544443
Q ss_pred H
Q psy16295 84 V 84 (128)
Q Consensus 84 I 84 (128)
+
T Consensus 117 ~ 117 (477)
T 1wao_1 117 C 117 (477)
T ss_dssp H
T ss_pred H
Confidence 3
No 99
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=97.70 E-value=0.00028 Score=51.90 Aligned_cols=74 Identities=7% Similarity=0.135 Sum_probs=61.3
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16295 4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESI 83 (128)
Q Consensus 4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~ 83 (128)
|+.|+.+.+.. +..+++.++++.++.+ | ...+.++.+|..+++.|+|++|+.+++.+++.+|++..+....-.
T Consensus 25 ~~~a~~~~~~~---~~~~A~~~~~~~~~~~-~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 97 (327)
T 3cv0_A 25 MEEGLSMLKLA---NLAEAALAFEAVCQAA-P---EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAV 97 (327)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHhc---cHHHHHHHHHHHHHhC-C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHH
Confidence 66777777765 4568999999999888 6 578899999999999999999999999999999999877654443
Q ss_pred H
Q psy16295 84 V 84 (128)
Q Consensus 84 I 84 (128)
+
T Consensus 98 ~ 98 (327)
T 3cv0_A 98 S 98 (327)
T ss_dssp H
T ss_pred H
Confidence 3
No 100
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.69 E-value=0.00031 Score=48.64 Aligned_cols=72 Identities=11% Similarity=0.066 Sum_probs=44.0
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHH-Hhhhhch--HHHHHHHHHHHhcCCCCHHHHHH
Q psy16295 4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIG-NARIKEY--TKSLKYCRAFLAIESENSQVQHL 80 (128)
Q Consensus 4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg-~yklgdY--~~A~~~~~~lL~~eP~N~QA~~L 80 (128)
+.+|.++.... +..+++..++..++.+ | ...+.++.+|.. +++.|+| ++|+.+++.+++.+|++..+...
T Consensus 48 ~~lg~~~~~~~---~~~~A~~~~~~al~~~-p---~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 120 (177)
T 2e2e_A 48 ALLGEYYLWQN---DYSNSLLAYRQALQLR-G---ENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALML 120 (177)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHHH-C---SCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHHcC-C---CCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHH
Confidence 34455554443 3446666666666666 4 346666666666 6667776 77777777777777776665544
Q ss_pred HH
Q psy16295 81 ES 82 (128)
Q Consensus 81 k~ 82 (128)
.-
T Consensus 121 la 122 (177)
T 2e2e_A 121 LA 122 (177)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 101
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=97.69 E-value=0.00041 Score=54.45 Aligned_cols=80 Identities=11% Similarity=0.059 Sum_probs=65.6
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16295 3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLES 82 (128)
Q Consensus 3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~ 82 (128)
.+++|+++.+.....+..++++.++..+..+ | ...+.++.+|..+.++|+|++|+.+++.+++++|++.++.....
T Consensus 415 ~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~---~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 490 (514)
T 2gw1_A 415 LVGKATLLTRNPTVENFIEATNLLEKASKLD-P---RSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAIT 490 (514)
T ss_dssp HHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-c---ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 4566666665111456778999999999888 6 57899999999999999999999999999999999999987766
Q ss_pred HHHH
Q psy16295 83 IVKK 86 (128)
Q Consensus 83 ~Ie~ 86 (128)
..+.
T Consensus 491 ~~~~ 494 (514)
T 2gw1_A 491 FAEA 494 (514)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 102
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.68 E-value=0.00029 Score=53.89 Aligned_cols=74 Identities=9% Similarity=0.092 Sum_probs=52.8
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16295 4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESI 83 (128)
Q Consensus 4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~ 83 (128)
++.|..+.+.. +..++++.++..++.+ | ...+.++.+|..++++|+|++|+.+++..++++|+|..+....-.
T Consensus 8 ~~~g~~~~~~g---~~~~A~~~~~~al~~~-p---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 8 KEQGNRLFVGR---KYPEAAACYGRAITRN-P---LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHHC-S---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHHhC-C---ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 45555555544 4556888888887777 5 467788888888888888888888888888888888776554443
Q ss_pred H
Q psy16295 84 V 84 (128)
Q Consensus 84 I 84 (128)
+
T Consensus 81 ~ 81 (281)
T 2c2l_A 81 C 81 (281)
T ss_dssp H
T ss_pred H
Confidence 3
No 103
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=97.66 E-value=0.00049 Score=48.72 Aligned_cols=53 Identities=11% Similarity=0.275 Sum_probs=25.6
Q ss_pred HHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHH
Q psy16295 21 KGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQV 77 (128)
Q Consensus 21 ~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA 77 (128)
++++.++..++.. | ...+.++.+|..+.++|+|++|+.+++.+++..|++.++
T Consensus 109 ~A~~~~~~~~~~~-~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 161 (243)
T 2q7f_A 109 EAKDMFEKALRAG-M---ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEA 161 (243)
T ss_dssp HHHHHHHHHHHHT-C---CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHhC-C---CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHH
Confidence 4444444444444 2 234444555555555555555555555555555554443
No 104
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=97.66 E-value=0.00031 Score=55.74 Aligned_cols=78 Identities=10% Similarity=0.089 Sum_probs=62.4
Q ss_pred HHHHHHHhccCCh-------hhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHH
Q psy16295 4 FNYSFCLVRSEFC-------ADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQ 76 (128)
Q Consensus 4 F~YAwaLv~S~~~-------~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~Q 76 (128)
++.|+++.+..+. .+..+++..++..+..+ | ...+.++.+|..+.++|+|++|+.+++..+++.|++..
T Consensus 422 ~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 497 (537)
T 3fp2_A 422 IGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-P---RSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDE 497 (537)
T ss_dssp HHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHH
T ss_pred HHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-C---CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 3445666555333 78889999999999988 6 56799999999999999999999999999999999998
Q ss_pred HHHHHHHHH
Q psy16295 77 VQHLESIVK 85 (128)
Q Consensus 77 A~~Lk~~Ie 85 (128)
........+
T Consensus 498 ~~~~~~~~~ 506 (537)
T 3fp2_A 498 KLQATTFAE 506 (537)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhHHH
Confidence 876555433
No 105
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=97.66 E-value=0.0003 Score=50.57 Aligned_cols=77 Identities=13% Similarity=0.090 Sum_probs=62.1
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16295 3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLES 82 (128)
Q Consensus 3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~ 82 (128)
.+++|+++.+.. +..++++.++..++.. | ...+.++.+|..++++|+|++|+.+++.+++..|++..+..+..
T Consensus 144 ~~~la~~~~~~g---~~~~A~~~~~~~~~~~-~---~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 216 (252)
T 2ho1_A 144 FENLGLVSLQMK---KPAQAKEYFEKSLRLN-R---NQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGI 216 (252)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHHC-S---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHhcC-c---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 456777777654 4558899999988887 5 56888999999999999999999999999999999988877666
Q ss_pred HHHH
Q psy16295 83 IVKK 86 (128)
Q Consensus 83 ~Ie~ 86 (128)
.+..
T Consensus 217 ~~~~ 220 (252)
T 2ho1_A 217 RLAK 220 (252)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 106
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=97.64 E-value=0.00037 Score=53.11 Aligned_cols=74 Identities=9% Similarity=0.007 Sum_probs=51.3
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16295 4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESI 83 (128)
Q Consensus 4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~ 83 (128)
++++..+.+. .+..++++.+++.++.+ | ...+.++.++..+.++|+|++|+.+++..++++|++..+....-.
T Consensus 217 ~~l~~~~~~~---g~~~~A~~~~~~al~~~-p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 289 (365)
T 4eqf_A 217 TGLGVLFHLS---GEFNRAIDAFNAALTVR-P---EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGI 289 (365)
T ss_dssp HHHHHHHHHH---TCHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHC---CCHHHHHHHHHHHHHhC-C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 4455555543 34557778888777776 5 456778888888888888888888888888888887666544433
Q ss_pred H
Q psy16295 84 V 84 (128)
Q Consensus 84 I 84 (128)
+
T Consensus 290 ~ 290 (365)
T 4eqf_A 290 S 290 (365)
T ss_dssp H
T ss_pred H
Confidence 3
No 107
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=97.64 E-value=0.00021 Score=56.79 Aligned_cols=77 Identities=8% Similarity=0.089 Sum_probs=63.0
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16295 4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESI 83 (128)
Q Consensus 4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~ 83 (128)
++.|..+.+..+. .++++.+++.++.+ | ...+.++.+|..++++|+|++|+++++.+++.+|+|..+....-.
T Consensus 29 ~~~g~~~~~~g~~---~~A~~~~~~al~~~-p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 101 (537)
T 3fp2_A 29 KNRGNHFFTAKNF---NEAIKYYQYAIELD-P---NEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHTTCC---C-CHHHHHHHHHHC-T---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHhccH---HHHHHHHHHHHhhC-C---CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 5566666666543 47999999999998 6 578999999999999999999999999999999999988766655
Q ss_pred HHHH
Q psy16295 84 VKKR 87 (128)
Q Consensus 84 Ie~~ 87 (128)
+-..
T Consensus 102 ~~~~ 105 (537)
T 3fp2_A 102 ANES 105 (537)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5433
No 108
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=97.63 E-value=9.4e-05 Score=52.01 Aligned_cols=74 Identities=8% Similarity=-0.011 Sum_probs=62.9
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16295 3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLES 82 (128)
Q Consensus 3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~ 82 (128)
.|+.|..+.+..+ ..+++..++..++.+ | ...+.++.+|..+.+.|+|++|+.+++.+++.+| ++....+..
T Consensus 9 ~~~~a~~~~~~g~---~~~A~~~~~~al~~~-P---~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~ 80 (176)
T 2r5s_A 9 LLKQVSELLQQGE---HAQALNVIQTLSDEL-Q---SRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIA 80 (176)
T ss_dssp HHHHHHHHHHTTC---HHHHHHHHHTSCHHH-H---TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHH
T ss_pred HHHHHHHHHHcCC---HHHHHHHHHHHHHHC-C---CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHH
Confidence 4677777777664 468999999999988 7 6789999999999999999999999999999999 887766654
Q ss_pred HH
Q psy16295 83 IV 84 (128)
Q Consensus 83 ~I 84 (128)
.+
T Consensus 81 ~~ 82 (176)
T 2r5s_A 81 KL 82 (176)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 109
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=97.63 E-value=0.0004 Score=52.39 Aligned_cols=75 Identities=15% Similarity=0.250 Sum_probs=61.1
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16295 3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLES 82 (128)
Q Consensus 3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~ 82 (128)
-|+.|..+.+.. +..+++..++..++.+ | ...+.++.+|..+.++|+|++|+.+++.+++.+|++..+....-
T Consensus 67 ~~~~~~~~~~~g---~~~~A~~~~~~al~~~-p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~ 139 (368)
T 1fch_A 67 PFEEGLRRLQEG---DLPNAVLLFEAAVQQD-P---KHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALA 139 (368)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHSC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHHhC-C---CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 456677777655 4568999999999887 6 57889999999999999999999999999999999987765544
Q ss_pred HH
Q psy16295 83 IV 84 (128)
Q Consensus 83 ~I 84 (128)
.+
T Consensus 140 ~~ 141 (368)
T 1fch_A 140 VS 141 (368)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 110
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=97.62 E-value=0.00024 Score=58.00 Aligned_cols=62 Identities=6% Similarity=0.147 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16295 19 IRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIV 84 (128)
Q Consensus 19 ~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~I 84 (128)
..+++..++..++.+ | ...+.+++++..+.++|+|++|+.+++.+|+++|+|..+-.-+..+
T Consensus 148 ~~eAl~~~~~al~l~-P---~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~ 209 (382)
T 2h6f_A 148 LHEEMNYITAIIEEQ-P---KNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWV 209 (382)
T ss_dssp HHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC-C---CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHH
Confidence 455666666666666 4 4566666666666666666666666666666666666555444433
No 111
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=97.60 E-value=0.00055 Score=51.63 Aligned_cols=74 Identities=9% Similarity=-0.009 Sum_probs=53.8
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16295 4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESI 83 (128)
Q Consensus 4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~ 83 (128)
+++|.++.+.. +..++++.++..++.+ | ...+.++.+|..+.++|+|++|+.+++.+++++|++..+....-.
T Consensus 221 ~~l~~~~~~~g---~~~~A~~~~~~al~~~-~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~ 293 (368)
T 1fch_A 221 CGLGVLFNLSG---EYDKAVDCFTAALSVR-P---NDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGI 293 (368)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHHhC-c---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 45556665544 4557888888888776 5 457788888888888888888888888888888888766554444
Q ss_pred H
Q psy16295 84 V 84 (128)
Q Consensus 84 I 84 (128)
+
T Consensus 294 ~ 294 (368)
T 1fch_A 294 S 294 (368)
T ss_dssp H
T ss_pred H
Confidence 3
No 112
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.59 E-value=0.00037 Score=54.84 Aligned_cols=76 Identities=11% Similarity=0.171 Sum_probs=61.9
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccch--------------HHHHHHHHHHHhhhhchHHHHHHHHHHH
Q psy16295 3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRK--------------RDYLYYLAIGNARIKEYTKSLKYCRAFL 68 (128)
Q Consensus 3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~--------------rd~LYyLAvg~yklgdY~~A~~~~~~lL 68 (128)
.++++..+.+.. +..+++..++..++.. | ... .++++.+|..++++|+|++|+.+++.+|
T Consensus 150 ~~~~g~~~~~~g---~~~~A~~~y~~Al~~~-p--~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 150 VKERGTVYFKEG---KYKQALLQYKKIVSWL-E--YESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHT---CHHHHHHHHHHHHHHT-T--TCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHHHh-h--ccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 356667776644 5668999999999887 5 232 6899999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHH
Q psy16295 69 AIESENSQVQHLESIV 84 (128)
Q Consensus 69 ~~eP~N~QA~~Lk~~I 84 (128)
+++|+|..+...+-.+
T Consensus 224 ~~~p~~~~a~~~lg~~ 239 (336)
T 1p5q_A 224 ELDSNNEKGLSRRGEA 239 (336)
T ss_dssp HHCTTCHHHHHHHHHH
T ss_pred HhCCCcHHHHHHHHHH
Confidence 9999998876655444
No 113
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=97.58 E-value=0.00018 Score=52.19 Aligned_cols=65 Identities=12% Similarity=0.178 Sum_probs=38.5
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCH
Q psy16295 3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENS 75 (128)
Q Consensus 3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~ 75 (128)
.+++|..+....+ ..+++..+++.++.+ | ...++++.+|..++++|+|++|+.+++.+++ .|+|+
T Consensus 6 ~~~~a~~~~~~~~---~~~A~~~~~~~l~~~-p---~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~ 70 (272)
T 3u4t_A 6 EFRYADFLFKNNN---YAEAIEVFNKLEAKK-Y---NSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNAT 70 (272)
T ss_dssp HHHHHHHHHTTTC---HHHHHHHHHHHHHTT-C---CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTT
T ss_pred HHHHHHHHHHhcC---HHHHHHHHHHHHHhC-C---CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCch
Confidence 3556666655443 335666666666665 4 3455666666666666666666666666666 44443
No 114
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=97.57 E-value=0.00062 Score=50.05 Aligned_cols=71 Identities=11% Similarity=-0.031 Sum_probs=47.0
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHH
Q psy16295 4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLE 81 (128)
Q Consensus 4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk 81 (128)
+.+|+.+.+.. +..++++.++..++.+ | ...+.++.+|..+.+.|+|++|+.+++.+++..|++..+....
T Consensus 176 ~~la~~~~~~~---~~~~A~~~~~~~~~~~-~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 246 (327)
T 3cv0_A 176 ASLGVLYNLSN---NYDSAAANLRRAVELR-P---DDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNM 246 (327)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHhc---cHHHHHHHHHHHHHhC-C---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 44555555443 3456777777777666 4 4567777777777777777777777777777777776655443
No 115
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=97.56 E-value=0.00051 Score=53.00 Aligned_cols=74 Identities=8% Similarity=0.105 Sum_probs=63.3
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHH-HHHHHHHHHhcCCCCHHHHHHH
Q psy16295 3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTK-SLKYCRAFLAIESENSQVQHLE 81 (128)
Q Consensus 3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~-A~~~~~~lL~~eP~N~QA~~Lk 81 (128)
.++.|.++.+..+ ..++++.|++.+..+ | ...+.++.+++.+..+|++++ +.++++.+++++|+|+.+..+.
T Consensus 203 ~~~la~~~~~~g~---~~eA~~~l~~al~~~-p---~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~~ 275 (291)
T 3mkr_A 203 LNGQAACHMAQGR---WEAAEGVLQEALDKD-S---GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYR 275 (291)
T ss_dssp HHHHHHHHHHTTC---HHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHcCC---HHHHHHHHHHHHHhC-C---CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 3567777777664 458999999999998 7 689999999999999999986 6799999999999999998876
Q ss_pred HH
Q psy16295 82 SI 83 (128)
Q Consensus 82 ~~ 83 (128)
+.
T Consensus 276 ~~ 277 (291)
T 3mkr_A 276 AK 277 (291)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 116
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.56 E-value=0.00017 Score=46.84 Aligned_cols=50 Identities=10% Similarity=0.086 Sum_probs=43.8
Q ss_pred chHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy16295 39 RKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIVKKRM 88 (128)
Q Consensus 39 ~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~Ie~~i 88 (128)
...+.+|.+|..++++|+|++|+.+++.+++.+|++.++....-.+-.+.
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 54 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERL 54 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 56889999999999999999999999999999999999877666664443
No 117
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.54 E-value=0.0005 Score=55.46 Aligned_cols=77 Identities=9% Similarity=0.147 Sum_probs=60.2
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHhh----------------ccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHH
Q psy16295 4 FNYSFCLVRSEFCADIRKGILLLEELFK----------------TETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAF 67 (128)
Q Consensus 4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~----------------~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~l 67 (128)
++.|..+.+.. +..++++.++..++ .+ | ...++++.+|..++++|+|++|+.+++.+
T Consensus 227 ~~~g~~~~~~g---~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~-~---~~~~~~~nla~~~~~~g~~~~A~~~~~~a 299 (370)
T 1ihg_A 227 KNIGNTFFKSQ---NWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQ-P---VALSCVLNIGACKLKMSDWQGAVDSCLEA 299 (370)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGH-H---HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhc---CHHHHHHHHHHHHHHhhcCccccChHHHHHHH-H---HHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 45566666554 45577888887776 33 3 57899999999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHH
Q psy16295 68 LAIESENSQVQHLESIVKKR 87 (128)
Q Consensus 68 L~~eP~N~QA~~Lk~~Ie~~ 87 (128)
|+++|+|.++.-.+-.+-.+
T Consensus 300 l~~~p~~~~a~~~lg~~~~~ 319 (370)
T 1ihg_A 300 LEIDPSNTKALYRRAQGWQG 319 (370)
T ss_dssp HTTCTTCHHHHHHHHHHHHH
T ss_pred HHhCchhHHHHHHHHHHHHH
Confidence 99999999887666555433
No 118
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=97.52 E-value=0.00036 Score=60.32 Aligned_cols=75 Identities=13% Similarity=0.116 Sum_probs=62.5
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16295 3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLES 82 (128)
Q Consensus 3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~ 82 (128)
.++.|.++.... +..++++.++..++.+ | ...+.+|.+|..++++|+|++|+.+++.+|+.+|+|.++..-.-
T Consensus 436 ~~~~a~~~~~~g---~~~~A~~~~~~al~~~-p---~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg 508 (681)
T 2pzi_A 436 PLMEVRALLDLG---DVAKATRKLDDLAERV-G---WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALA 508 (681)
T ss_dssp HHHHHHHHHHHT---CHHHHHHHHHHHHHHH-C---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHH
T ss_pred HHHHHHHHHhcC---CHHHHHHHHHHHhccC-c---chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 355666666654 4568999999999998 6 57899999999999999999999999999999999988875544
Q ss_pred HH
Q psy16295 83 IV 84 (128)
Q Consensus 83 ~I 84 (128)
.+
T Consensus 509 ~~ 510 (681)
T 2pzi_A 509 AT 510 (681)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 119
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=97.51 E-value=0.00064 Score=52.36 Aligned_cols=69 Identities=13% Similarity=0.072 Sum_probs=45.8
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHH
Q psy16295 4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQH 79 (128)
Q Consensus 4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~ 79 (128)
++++.++.+.. +..++++.+++.++.. | ...+.++.++..+.+.|+|++|+.+++.+++..|++..+..
T Consensus 275 ~~l~~~~~~~g---~~~~A~~~~~~al~~~-p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 343 (388)
T 1w3b_A 275 CNLANALKEKG---SVAEAEDCYNTALRLC-P---THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHS 343 (388)
T ss_dssp HHHHHHHHHHS---CHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHH
T ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHhhC-c---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 45566665544 3446777777777666 4 45667777777777777777777777777777777765543
No 120
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=97.51 E-value=0.0006 Score=56.41 Aligned_cols=57 Identities=5% Similarity=-0.032 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHH
Q psy16295 19 IRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQH 79 (128)
Q Consensus 19 ~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~ 79 (128)
..++++.+++.++.+ | ...+.++.+|..++++|+|++|+.+++..++.+|+|.++..
T Consensus 39 ~~~A~~~~~~al~~~-p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 95 (568)
T 2vsy_A 39 TTAGEMAVQRGLALH-P---GHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIAL 95 (568)
T ss_dssp HHHHHHHHHHHHTTS-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHhC-C---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 335555555555554 3 34455555555555555555555555555555555544433
No 121
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.51 E-value=0.0005 Score=46.53 Aligned_cols=75 Identities=5% Similarity=0.042 Sum_probs=55.0
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccc----cchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHH
Q psy16295 3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDI----DRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQ 78 (128)
Q Consensus 3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~----~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~ 78 (128)
-++.|.++.+.. +..++|+.++..++-+ |+. ...-.+++.++..+.++|+|++|+++++..|+..|++.-..
T Consensus 45 ~~nlg~~~~~~~---~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~~ 120 (127)
T 4gcn_A 45 YNNKAAVYFEEK---KFAECVQFCEKAVEVG-RETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVK 120 (127)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHHH-HHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCHHHHH
T ss_pred HHhHHHHHHHhh---hHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCHHHHH
Confidence 356777777765 4557888888877665 310 12235788899999999999999999999999999755444
Q ss_pred HHH
Q psy16295 79 HLE 81 (128)
Q Consensus 79 ~Lk 81 (128)
.|+
T Consensus 121 ~l~ 123 (127)
T 4gcn_A 121 KVK 123 (127)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 122
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=97.51 E-value=0.00067 Score=52.73 Aligned_cols=70 Identities=6% Similarity=0.018 Sum_probs=46.7
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHH
Q psy16295 4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHL 80 (128)
Q Consensus 4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~L 80 (128)
+..|..+.+.. +..+++.++++.++.+ | ...+.++.+|..++++|+|++|+.+++.+++.+|++..+...
T Consensus 30 ~~~~~~~~~~g---~~~~A~~~~~~~l~~~-p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 99 (450)
T 2y4t_A 30 LELGKKLLAAG---QLADALSQFHAAVDGD-P---DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQ 99 (450)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHHhC-C---ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 45555555544 3446777777777666 4 456777777777777777777777777777777777655443
No 123
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.48 E-value=0.00062 Score=55.97 Aligned_cols=75 Identities=15% Similarity=0.183 Sum_probs=60.7
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccch--------------HHHHHHHHHHHhhhhchHHHHHHHHHHHh
Q psy16295 4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRK--------------RDYLYYLAIGNARIKEYTKSLKYCRAFLA 69 (128)
Q Consensus 4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~--------------rd~LYyLAvg~yklgdY~~A~~~~~~lL~ 69 (128)
++.++.+.+.. +..+++..++..++.. | ... ..+++.+|.+++++|+|++|+.+++.+|+
T Consensus 272 ~~~G~~~~~~g---~~~~A~~~y~~Al~~~-p--~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 272 KEKGTVYFKGG---KYMQAVIQYGKIVSWL-E--MEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHHH-T--TCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC---CHHHHHHHHHHHHHHh-c--ccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 46667776644 5668999999988876 4 222 68999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHH
Q psy16295 70 IESENSQVQHLESIV 84 (128)
Q Consensus 70 ~eP~N~QA~~Lk~~I 84 (128)
++|+|..+.-.+-.+
T Consensus 346 ~~p~~~~a~~~~g~a 360 (457)
T 1kt0_A 346 LDSANEKGLYRRGEA 360 (457)
T ss_dssp HSTTCHHHHHHHHHH
T ss_pred cCCccHHHHHHHHHH
Confidence 999998876555444
No 124
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=97.47 E-value=0.00067 Score=47.52 Aligned_cols=56 Identities=13% Similarity=0.132 Sum_probs=47.6
Q ss_pred HHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCH--HHHHHH
Q psy16295 22 GILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENS--QVQHLE 81 (128)
Q Consensus 22 GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~--QA~~Lk 81 (128)
++..++..++.+ | ...+.+|.+|..+.++|+|++|+.+++.+|+.+|++. ++....
T Consensus 93 a~~~~~~al~~~-P---~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l 150 (176)
T 2r5s_A 93 ELKRLEQELAAN-P---DNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTF 150 (176)
T ss_dssp HHHHHHHHHHHS-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHH
T ss_pred HHHHHHHHHHhC-C---CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHH
Confidence 578888888887 6 5789999999999999999999999999999999863 454433
No 125
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=97.46 E-value=0.00053 Score=50.45 Aligned_cols=61 Identities=7% Similarity=-0.040 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhh-chHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16295 19 IRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIK-EYTKSLKYCRAFLAIESENSQVQHLESI 83 (128)
Q Consensus 19 ~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklg-dY~~A~~~~~~lL~~eP~N~QA~~Lk~~ 83 (128)
..+++.++++.++.+ | ...+.++.++..+++.| +|++|+.+++.+++.+|++.++....-.
T Consensus 72 ~~~A~~~~~~~~~~~-~---~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 133 (330)
T 3hym_B 72 ANELFYLSHKLVDLY-P---SNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGH 133 (330)
T ss_dssp HHHHHHHHHHHHHHC-T---TSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-c---CCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence 445666666666555 4 34566666666666666 6666666666666666666655444333
No 126
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=97.42 E-value=0.00076 Score=55.79 Aligned_cols=78 Identities=6% Similarity=-0.009 Sum_probs=62.3
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16295 4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESI 83 (128)
Q Consensus 4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~ 83 (128)
+++|.++.... +..++++.+++.++.+ | ...+.++.+|..+.++|+|++|+.+++..++.+|+|.++......
T Consensus 61 ~~lg~~~~~~g---~~~~A~~~~~~al~~~-p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 133 (568)
T 2vsy_A 61 ARLGRVRWTQQ---RHAEAAVLLQQASDAA-P---EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLN 133 (568)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHhcC-C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 56677776654 4568899999988887 6 568899999999999999999999999999999999887766655
Q ss_pred HHHHH
Q psy16295 84 VKKRM 88 (128)
Q Consensus 84 Ie~~i 88 (128)
+....
T Consensus 134 ~~~~~ 138 (568)
T 2vsy_A 134 WRRRL 138 (568)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 55544
No 127
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=97.42 E-value=0.00095 Score=52.35 Aligned_cols=73 Identities=11% Similarity=0.104 Sum_probs=55.9
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16295 4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESI 83 (128)
Q Consensus 4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~ 83 (128)
++.|..+.+.. +..+++..+++.++.+ | ..+.++.+|..+.++|+|++|+.+++.+++.+|+|..+....-.
T Consensus 10 ~~~g~~~~~~g---~~~~A~~~~~~al~~~-p----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 81 (514)
T 2gw1_A 10 KDKGNQFFRNK---KYDDAIKYYNWALELK-E----DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHTS---CHHHHHHHHHHHHHHC-C----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred HHHHHHHHHhc---cHHHHHHHHHHHHhcC-c----cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence 45566666655 4557888888888887 6 26788888888888888888888888888888888877655544
Q ss_pred H
Q psy16295 84 V 84 (128)
Q Consensus 84 I 84 (128)
+
T Consensus 82 ~ 82 (514)
T 2gw1_A 82 A 82 (514)
T ss_dssp H
T ss_pred H
Confidence 4
No 128
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=97.41 E-value=0.00096 Score=54.37 Aligned_cols=77 Identities=12% Similarity=0.202 Sum_probs=63.9
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhc-hHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16295 5 NYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKE-YTKSLKYCRAFLAIESENSQVQHLESI 83 (128)
Q Consensus 5 ~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgd-Y~~A~~~~~~lL~~eP~N~QA~~Lk~~ 83 (128)
+++..+.+. .+..++++.++..++.+ | ...+.+++++..+.++|+ |++|+.+++.+|+++|+|.++-..+..
T Consensus 102 ~lg~~~~~~---g~~~~Al~~~~~al~l~-P---~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~ 174 (382)
T 2h6f_A 102 YFRAVLQRD---ERSERAFKLTRDAIELN-A---ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHT---CCCHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHC---CChHHHHHHHHHHHHhC-c---cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 444444443 34568999999999999 7 689999999999999996 999999999999999999999887776
Q ss_pred HHHHH
Q psy16295 84 VKKRM 88 (128)
Q Consensus 84 Ie~~i 88 (128)
+-.++
T Consensus 175 ~~~~~ 179 (382)
T 2h6f_A 175 LVEWL 179 (382)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 65444
No 129
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.40 E-value=0.00072 Score=53.34 Aligned_cols=75 Identities=15% Similarity=0.151 Sum_probs=57.1
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccch----------------HHHHHHHHHHHhhhhchHHHHHHHHHH
Q psy16295 4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRK----------------RDYLYYLAIGNARIKEYTKSLKYCRAF 67 (128)
Q Consensus 4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~----------------rd~LYyLAvg~yklgdY~~A~~~~~~l 67 (128)
++.++.+.+.. +..+++..++..++.. |+ .. .++++.+|..++++|+|++|+.+++..
T Consensus 183 ~~~g~~~~~~g---~~~~A~~~y~~Al~~~-p~--~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 183 KMDGNSLFKEE---KLEEAMQQYEMAIAYM-GD--DFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHTCSSS---CCHHHHHHHHHHHHHS-CH--HHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHhcC---CHHHHHHHHHHHHHHh-cc--chhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45555555544 4457888888877776 41 11 159999999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHH
Q psy16295 68 LAIESENSQVQHLESIV 84 (128)
Q Consensus 68 L~~eP~N~QA~~Lk~~I 84 (128)
|+++|+|..+.-.+-.+
T Consensus 257 l~~~p~~~~a~~~lg~a 273 (338)
T 2if4_A 257 LTEEEKNPKALFRRGKA 273 (338)
T ss_dssp HHHCTTCHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHH
Confidence 99999998876554444
No 130
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.39 E-value=0.00056 Score=52.29 Aligned_cols=66 Identities=8% Similarity=0.227 Sum_probs=56.9
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCH
Q psy16295 3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENS 75 (128)
Q Consensus 3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~ 75 (128)
.+++|.++.+.. +..+++..++..++.+ | ...+.+|.+|..+.++|+|++|+.+++..++.+|+|.
T Consensus 41 ~~~la~~~~~~~---~~~~A~~~~~~al~~~-p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 106 (281)
T 2c2l_A 41 YTNRALCYLKMQ---QPEQALADCRRALELD-G---QSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR 106 (281)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHTTSC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhc---CHHHHHHHHHHHHHhC-C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch
Confidence 356677777655 4568999999999988 6 5789999999999999999999999999999999883
No 131
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=97.34 E-value=0.0015 Score=50.29 Aligned_cols=57 Identities=11% Similarity=0.003 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHH
Q psy16295 19 IRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQH 79 (128)
Q Consensus 19 ~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~ 79 (128)
..++++.++..++.+ | ...+.++.++..+.+.|+|++|+.+++.+++..|++..+..
T Consensus 253 ~~~A~~~~~~al~~~-p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 309 (388)
T 1w3b_A 253 IDLAIDTYRRAIELQ-P---HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLN 309 (388)
T ss_dssp HHHHHHHHHHHHHTC-S---SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHhhC-C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHH
Confidence 445666777666666 4 45666777777777777777777777777777777665543
No 132
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.33 E-value=0.00086 Score=55.70 Aligned_cols=65 Identities=9% Similarity=0.072 Sum_probs=57.5
Q ss_pred hhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16295 16 CADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIV 84 (128)
Q Consensus 16 ~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~I 84 (128)
..+..++++.+++.++.+ | ...+.++.+|..++++|+|++|+.+++..++++|++.++....-.+
T Consensus 19 ~g~~~~A~~~~~~Al~~~-p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 83 (477)
T 1wao_1 19 AKDYENAIKFYSQAIELN-P---SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS 83 (477)
T ss_dssp TTCHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhC-C---ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 457789999999999998 6 5799999999999999999999999999999999998876655444
No 133
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=97.31 E-value=0.0011 Score=58.69 Aligned_cols=68 Identities=12% Similarity=0.070 Sum_probs=35.3
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHH
Q psy16295 4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQ 78 (128)
Q Consensus 4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~ 78 (128)
++++.++.... +..++++.++..++-+ | ...+.++.||..+.++|+|++|+.+++..|+++|++..+.
T Consensus 81 ~nLg~~l~~~g---~~~~A~~~~~kAl~l~-P---~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~ 148 (723)
T 4gyw_A 81 SNMGNTLKEMQ---DVQGALQCYTRAIQIN-P---AFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAY 148 (723)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHH
T ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHHhC-C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence 34444444433 2334555555555554 3 3455555555555555555555555555555555555543
No 134
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=97.25 E-value=0.0014 Score=58.01 Aligned_cols=54 Identities=7% Similarity=0.116 Sum_probs=27.2
Q ss_pred HHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHH
Q psy16295 21 KGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQ 78 (128)
Q Consensus 21 ~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~ 78 (128)
++++.+++.++-+ | ...+.++.||..+.++|+|++|+.+++..|+++|++..+.
T Consensus 61 eA~~~~~~Al~l~-P---~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~ 114 (723)
T 4gyw_A 61 EALMHYKEAIRIS-P---TFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAH 114 (723)
T ss_dssp HHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHhC-C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 4455555544444 3 3445555555555555555555555555555555554443
No 135
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=97.24 E-value=0.0019 Score=53.12 Aligned_cols=79 Identities=10% Similarity=0.062 Sum_probs=64.9
Q ss_pred HHHHHHHHhcc--CCh----hhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhh--------hchHHHHHHHHHHH
Q psy16295 3 QFNYSFCLVRS--EFC----ADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARI--------KEYTKSLKYCRAFL 68 (128)
Q Consensus 3 ~F~YAwaLv~S--~~~----~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~ykl--------gdY~~A~~~~~~lL 68 (128)
.+++|+++... ... .+..++++.+++.++.+ | ...+.++.+|..+.++ |+|++|+.+++..+
T Consensus 173 ~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p---~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al 248 (474)
T 4abn_A 173 LQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-V---LDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAE 248 (474)
T ss_dssp HHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-C---CCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Confidence 45667777654 222 67789999999999998 6 5789999999999999 99999999999999
Q ss_pred hcCC---CCHHHHHHHHHHH
Q psy16295 69 AIES---ENSQVQHLESIVK 85 (128)
Q Consensus 69 ~~eP---~N~QA~~Lk~~Ie 85 (128)
+++| ++..+....-.+-
T Consensus 249 ~~~p~~~~~~~~~~~lg~~~ 268 (474)
T 4abn_A 249 KVDRKASSNPDLHLNRATLH 268 (474)
T ss_dssp HHCGGGGGCHHHHHHHHHHH
T ss_pred HhCCCcccCHHHHHHHHHHH
Confidence 9999 8888766555443
No 136
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=97.15 E-value=0.0018 Score=49.50 Aligned_cols=62 Identities=11% Similarity=0.053 Sum_probs=50.1
Q ss_pred HHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHH
Q psy16295 22 GILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESEN--SQVQHLESIVKKR 87 (128)
Q Consensus 22 GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N--~QA~~Lk~~Ie~~ 87 (128)
+++.|+..+..+ | ...+.+|.||..+...|+|++|+..++.+|+.+|++ .++....-.+-+.
T Consensus 204 a~~~l~~al~~~-P---~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~ 267 (287)
T 3qou_A 204 EIQQLQQQVAEN-P---EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAA 267 (287)
T ss_dssp HHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHH
T ss_pred cHHHHHHHHhcC-C---ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHH
Confidence 567777777777 6 578999999999999999999999999999999999 5555444444433
No 137
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.14 E-value=0.0013 Score=48.84 Aligned_cols=71 Identities=7% Similarity=0.033 Sum_probs=54.3
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHhhccCcccc-----c----hHHHHHHHHHHHhhhhchHHHHHHHHHHHhc----
Q psy16295 4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDID-----R----KRDYLYYLAIGNARIKEYTKSLKYCRAFLAI---- 70 (128)
Q Consensus 4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~-----~----~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~---- 70 (128)
++.+..+.+.. +..++|+..+..++-+ |+.. . .-.+++-+|.++.++|+|++|+.+++..|++
T Consensus 15 ~~~G~~l~~~g---~~eeAi~~Y~kAL~l~-p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 15 LSDAQRQLVAG---EYDEAAANCRRAMEIS-HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHT---CHHHHHHHHHHHHHHH-TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHhhC-CCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 44555555543 5567888888888877 5100 1 2349999999999999999999999999999
Q ss_pred ---CCCCHHHH
Q psy16295 71 ---ESENSQVQ 78 (128)
Q Consensus 71 ---eP~N~QA~ 78 (128)
+|++.++-
T Consensus 91 ~e~~pd~~~A~ 101 (159)
T 2hr2_A 91 GELNQDEGKLW 101 (159)
T ss_dssp CCTTSTHHHHH
T ss_pred ccCCCchHHHH
Confidence 99987765
No 138
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.11 E-value=0.0017 Score=39.50 Aligned_cols=46 Identities=13% Similarity=0.232 Sum_probs=39.8
Q ss_pred chHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16295 39 RKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIV 84 (128)
Q Consensus 39 ~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~I 84 (128)
...+.++.+|..+++.|+|++|+.+++..++.+|++.++....-.+
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 52 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 52 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 5678999999999999999999999999999999998765544333
No 139
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.07 E-value=0.0017 Score=40.78 Aligned_cols=45 Identities=4% Similarity=-0.003 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16295 40 KRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIV 84 (128)
Q Consensus 40 ~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~I 84 (128)
.-+.++.+|..+++.|+|++|+.+++..++.+|++..+....-.+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 47 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMA 47 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 467899999999999999999999999999999998776544443
No 140
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=97.07 E-value=0.0018 Score=49.47 Aligned_cols=66 Identities=8% Similarity=0.098 Sum_probs=55.0
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCH
Q psy16295 3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENS 75 (128)
Q Consensus 3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~ 75 (128)
.++.|..+.... +..+++..++..+..+ | ...+.++.||..+.++|++++|+..++.+++.+|++.
T Consensus 120 ~~~~a~~~~~~g---~~~~A~~~~~~al~~~-P---~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~ 185 (287)
T 3qou_A 120 XAQQAMQLMQES---NYTDALPLLXDAWQLS-N---QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTR 185 (287)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHHT-T---SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHH
T ss_pred HHHHHHHHHhCC---CHHHHHHHHHHHHHhC-C---cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchH
Confidence 355666666654 4457999999999998 7 5789999999999999999999999999999999544
No 141
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=97.06 E-value=0.0047 Score=49.88 Aligned_cols=77 Identities=12% Similarity=0.122 Sum_probs=60.0
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHhhcc-----CccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHH
Q psy16295 4 FNYSFCLVRSEFCADIRKGILLLEELFKTE-----TEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQ 78 (128)
Q Consensus 4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~-----~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~ 78 (128)
+++++.+.+.. +..++++++++.++.. .| ....+.++.++.++.+.|+|++|+++++.+++.+|+|..+.
T Consensus 479 ~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~p--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 553 (597)
T 2xpi_A 479 NELGVVAFNKS---DMQTAINHFQNALLLVKKTQSNE--KPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVH 553 (597)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHHHHHSCCCS--GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHH
T ss_pred HHHHHHHHHhC---CHHHHHHHHHHHHHhhhccccch--hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHH
Confidence 45677777655 4557888888887762 13 23378999999999999999999999999999999998776
Q ss_pred HHHHHHH
Q psy16295 79 HLESIVK 85 (128)
Q Consensus 79 ~Lk~~Ie 85 (128)
...-.+-
T Consensus 554 ~~l~~~~ 560 (597)
T 2xpi_A 554 TAIALVY 560 (597)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554443
No 142
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.96 E-value=0.0023 Score=48.68 Aligned_cols=71 Identities=6% Similarity=0.006 Sum_probs=49.1
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHhhccCcccc----chHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHH
Q psy16295 4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDID----RKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQ 78 (128)
Q Consensus 4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~----~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~ 78 (128)
.+++..+.+.. +..++++.++..++.. |+.. ...++++-+++.+.++|+|++|+.+++..++++|++....
T Consensus 162 ~~lg~~~~~~g---~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 236 (292)
T 1qqe_A 162 IKCADLKALDG---QYIEASDIYSKLIKSS-MGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSR 236 (292)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTT-SSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--------
T ss_pred HHHHHHHHHhC---CHHHHHHHHHHHHHHH-hcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcH
Confidence 45666776665 4568999999998876 4211 1235788899999999999999999999999999987644
No 143
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=96.91 E-value=0.0067 Score=47.59 Aligned_cols=73 Identities=19% Similarity=0.097 Sum_probs=56.1
Q ss_pred HHHHHHhcc-CChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHH
Q psy16295 5 NYSFCLVRS-EFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLE 81 (128)
Q Consensus 5 ~YAwaLv~S-~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk 81 (128)
++++.+..- ....+..+++..+++.+..+ | ...+.++.+|..+.+.|+|++|..+++..++..|++..+..-.
T Consensus 214 ~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~---~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 287 (472)
T 4g1t_A 214 LLALKLHKMREEGEEEGEGEKLVEEALEKA-P---GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQI 287 (472)
T ss_dssp HHHHHHHHCC------CHHHHHHHHHHHHC-S---SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-c---cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHH
Confidence 444444433 23455668999999998888 6 6789999999999999999999999999999999998875443
No 144
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=96.86 E-value=0.0028 Score=46.09 Aligned_cols=35 Identities=11% Similarity=0.001 Sum_probs=32.1
Q ss_pred chHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCC
Q psy16295 39 RKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESE 73 (128)
Q Consensus 39 ~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~ 73 (128)
...+.++.+|..+.++|+|++|+++++..+++.|+
T Consensus 276 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 276 TVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 56788999999999999999999999999999886
No 145
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=96.84 E-value=0.0035 Score=49.21 Aligned_cols=74 Identities=11% Similarity=0.208 Sum_probs=60.7
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhh---chHHHHHHHHHHHhcCCCCHHHHHH
Q psy16295 4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIK---EYTKSLKYCRAFLAIESENSQVQHL 80 (128)
Q Consensus 4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklg---dY~~A~~~~~~lL~~eP~N~QA~~L 80 (128)
.+.+|++++-. ..+..++++.++..++.+ | ...+.++.++..+++++ ++++|+..++..++++|++..+...
T Consensus 140 ~~~g~~~~~~~-~~~y~~A~~~~~kal~~~-p---~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~ 214 (472)
T 4g1t_A 140 CEEGWTRLKCG-GNQNERAKVCFEKALEKK-P---KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVL 214 (472)
T ss_dssp HHHHHHHHHHC-TTHHHHHHHHHHHHHHHS-T---TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHH
T ss_pred HHHHHHHHHHc-cccHHHHHHHHHHHHHhC-C---CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHH
Confidence 46688887754 456789999999999998 7 57899999999988765 5578999999999999999988755
Q ss_pred HH
Q psy16295 81 ES 82 (128)
Q Consensus 81 k~ 82 (128)
..
T Consensus 215 l~ 216 (472)
T 4g1t_A 215 LA 216 (472)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 146
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=96.73 E-value=0.0038 Score=53.89 Aligned_cols=67 Identities=3% Similarity=-0.101 Sum_probs=57.1
Q ss_pred ChhhHHHHHHHHHHHh--------hccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16295 15 FCADIRKGILLLEELF--------KTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIVK 85 (128)
Q Consensus 15 ~~~d~~~GI~LL~~l~--------~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~Ie 85 (128)
...+..++++.+++.+ ..+ | ...+.++.+|..++++|+|++|+..++.+++.+|+|..+...+-.+-
T Consensus 403 ~~~~~~~A~~~~~~al~~~~~~~~~~~-p---~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 477 (681)
T 2pzi_A 403 VLSQPVQTLDSLRAARHGALDADGVDF-S---ESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAE 477 (681)
T ss_dssp TTCCHHHHHHHHHHHHTC-------CC-T---TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHhhhhccccccccc-c---cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHH
Confidence 3456678999999998 666 5 67899999999999999999999999999999999998877665553
No 147
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=96.71 E-value=0.0085 Score=42.64 Aligned_cols=62 Identities=15% Similarity=0.014 Sum_probs=48.0
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHhhc-------cCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhc
Q psy16295 3 QFNYSFCLVRSEFCADIRKGILLLEELFKT-------ETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAI 70 (128)
Q Consensus 3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~-------~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~ 70 (128)
.+++|+++....+ ..++++.+++.+.. +.| ...+.++.+|..++++|+|++|+.+++..+++
T Consensus 88 ~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 156 (283)
T 3edt_B 88 LNNLAVLYGKRGK---YKEAEPLCKRALEIREKVLGKFHP---DVAKQLNNLALLCQNQGKAEEVEYYYRRALEI 156 (283)
T ss_dssp HHHHHHHHHTTTC---HHHHHHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHcCCCCh---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3567777776654 44666666665554 223 67889999999999999999999999999998
No 148
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=96.70 E-value=0.01 Score=43.15 Aligned_cols=72 Identities=19% Similarity=0.244 Sum_probs=35.6
Q ss_pred HHHHHHHHhccCC-hhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhh----hhchHHHHHHHHHHHhcCCCCHHH
Q psy16295 3 QFNYSFCLVRSEF-CADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNAR----IKEYTKSLKYCRAFLAIESENSQV 77 (128)
Q Consensus 3 ~F~YAwaLv~S~~-~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yk----lgdY~~A~~~~~~lL~~eP~N~QA 77 (128)
.++++..+..... +.|..++++.++...+.+ |+ ....+.+|.|+..+.. .+|+++|+.+++...+. |.+..+
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~-~~-~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a 164 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDS-ES-DAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYA 164 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST-TS-HHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC-CC-cchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHH
Confidence 3444444443221 345555555555555544 20 1235555555555555 55556666655555555 444443
No 149
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=96.64 E-value=0.013 Score=46.90 Aligned_cols=72 Identities=13% Similarity=0.110 Sum_probs=52.1
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHhhccC-ccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHH
Q psy16295 3 QFNYSFCLVRSEFCADIRKGILLLEELFKTET-EDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHL 80 (128)
Q Consensus 3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~-~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~L 80 (128)
.|+.+.++..-.. ..+++..+++...... | ....|-+|+++++..++|+.++|+..++.++..+|+ .++...
T Consensus 174 ~~~LG~al~~LG~---~~eAl~~l~~a~~g~~~P--~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~a 246 (282)
T 4f3v_A 174 GVAHGVAAANLAL---FTEAERRLTEANDSPAGE--ACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAA 246 (282)
T ss_dssp HHHHHHHHHHTTC---HHHHHHHHHHHHTSTTTT--TTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHH
T ss_pred HHHHHHHHHHCCC---HHHHHHHHHHHhcCCCCc--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHH
Confidence 4556666666553 4477888887765443 3 236788888888888888888888888888888888 665543
No 150
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.63 E-value=0.0039 Score=45.80 Aligned_cols=64 Identities=8% Similarity=0.005 Sum_probs=43.1
Q ss_pred HHHHHHHHhccC-ChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhh----hhchHHHHHHHHHHHhcCC
Q psy16295 3 QFNYSFCLVRSE-FCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNAR----IKEYTKSLKYCRAFLAIES 72 (128)
Q Consensus 3 ~F~YAwaLv~S~-~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yk----lgdY~~A~~~~~~lL~~eP 72 (128)
.++++..+.+.. ...+..++++.++..++.+ ..+.++.++..+.+ .++|++|+.+++..++..|
T Consensus 149 ~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 217 (273)
T 1ouv_A 149 CTILGSLYDAGRGTPKDLKKALASYDKACDLK------DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN 217 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC
Confidence 456666665521 1345567777777776654 24677777777777 7888888888777777766
No 151
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=96.50 E-value=0.016 Score=44.96 Aligned_cols=64 Identities=14% Similarity=0.098 Sum_probs=51.5
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHhh-----ccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCC
Q psy16295 3 QFNYSFCLVRSEFCADIRKGILLLEELFK-----TETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESE 73 (128)
Q Consensus 3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~-----~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~ 73 (128)
.+++|++..+.. +..++++.+++.+. .+ | ...++++.+|..++++|+|++|+.+++..+++-|.
T Consensus 225 ~~~lg~~y~~~~---~~~~A~~~~~~al~~~~~~~~-~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 293 (378)
T 3q15_A 225 LLNIANSYDRSG---DDQMAVEHFQKAAKVSREKVP-D---LLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA 293 (378)
T ss_dssp HHHHHHHHHHHT---CHHHHHHHHHHHHHHHHHHCG-G---GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHHHHHhhCC-h---hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 456777777654 44578888888777 55 5 34899999999999999999999999999998543
No 152
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=96.43 E-value=0.019 Score=37.08 Aligned_cols=69 Identities=16% Similarity=0.074 Sum_probs=41.2
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCC
Q psy16295 3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIES 72 (128)
Q Consensus 3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP 72 (128)
.++.|+.+....+.+.-.+-.+-..++.+.. ++......+++.+|..+..+|+|++|..+++..+++.|
T Consensus 52 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 120 (164)
T 3ro3_A 52 YSNLGNAYIFLGEFETASEYYKKTLLLARQL-KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 120 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4566666666666655443333333333331 11146677777777777777777777777777776643
No 153
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=96.42 E-value=0.022 Score=43.40 Aligned_cols=77 Identities=14% Similarity=0.063 Sum_probs=51.0
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHhhccCccc---cchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCH---HH
Q psy16295 4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDI---DRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENS---QV 77 (128)
Q Consensus 4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~---~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~---QA 77 (128)
+++|+.+.+.. +..++++.+++.++.. |.. ....++++-++..+..+|+|++|+.+++..| ++|++. ++
T Consensus 159 ~~lg~~~~~~g---~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~ 233 (307)
T 2ifu_A 159 GKASRLLVRQQ---KFDEAAASLQKEKSMY-KEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDC 233 (307)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHH
T ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHHHH-HHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHH
Confidence 46677776654 4457888888877653 210 1123466666777778899999999999999 999654 44
Q ss_pred HHHHHHHH
Q psy16295 78 QHLESIVK 85 (128)
Q Consensus 78 ~~Lk~~Ie 85 (128)
..+..+++
T Consensus 234 ~~l~~l~~ 241 (307)
T 2ifu_A 234 AALEDLLQ 241 (307)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 154
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=96.38 E-value=0.021 Score=40.50 Aligned_cols=52 Identities=17% Similarity=0.133 Sum_probs=43.3
Q ss_pred hhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcC
Q psy16295 17 ADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIE 71 (128)
Q Consensus 17 ~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~e 71 (128)
...+++++++++....+.| ...+.++.+|..++.+|+|++|+.+++..++..
T Consensus 22 ~~~~~al~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 73 (283)
T 3edt_B 22 PLCKQALEDLEKTSGHDHP---DVATMLNILALVYRDQNKYKEAAHLLNDALAIR 73 (283)
T ss_dssp HHHHHHHHHHHHHHCSSSH---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 3456777777777766533 688999999999999999999999999999884
No 155
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=96.32 E-value=0.014 Score=37.73 Aligned_cols=70 Identities=11% Similarity=-0.070 Sum_probs=51.7
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHhhc-cCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCC
Q psy16295 3 QFNYSFCLVRSEFCADIRKGILLLEELFKT-ETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESEN 74 (128)
Q Consensus 3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~-~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N 74 (128)
-++.|+.+....+.++-.+-..-..++.+. +.+ .....+++.+|..++.+|+|++|+.+++..++..|+.
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 82 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK--AAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL 82 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCc--hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 467888888887776644433333333332 212 5789999999999999999999999999999876653
No 156
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=96.27 E-value=0.017 Score=43.81 Aligned_cols=54 Identities=17% Similarity=0.124 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhhc-cCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHH
Q psy16295 19 IRKGILLLEELFKT-ETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQ 76 (128)
Q Consensus 19 ~~~GI~LL~~l~~~-~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~Q 76 (128)
..+++..++..++. + | ...+.++.++..+.++|++++|+..++.+|++.|++..
T Consensus 80 ~~~A~~~~~rAl~~~~-p---~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 134 (308)
T 2ond_A 80 SDEAANIYERAISTLL-K---KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT 134 (308)
T ss_dssp HHHHHHHHHHHHTTTT-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTH
T ss_pred hHHHHHHHHHHHHHhC-c---ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCcc
Confidence 47899999999984 6 6 56788999999999999999999999999999999875
No 157
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=96.22 E-value=0.019 Score=41.66 Aligned_cols=66 Identities=11% Similarity=-0.027 Sum_probs=50.3
Q ss_pred hHHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhh----hhchHHHHHHHHHHHhcCCC
Q psy16295 2 TQFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNAR----IKEYTKSLKYCRAFLAIESE 73 (128)
Q Consensus 2 ~~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yk----lgdY~~A~~~~~~lL~~eP~ 73 (128)
+.|+++..+.+...+.|..++++.++.....+ ..+.+|.|+..+.. .+|+++|+.+++...+..|.
T Consensus 52 a~~~lg~~y~~~g~~~~~~~A~~~~~~A~~~g------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 121 (212)
T 3rjv_A 52 ALALLAQLKIRNPQQADYPQARQLAEKAVEAG------SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSES 121 (212)
T ss_dssp HHHHHHHHTTSSTTSCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTS
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCC
Confidence 45677777776444557888888888876554 36788888888887 88888888888888888884
No 158
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=96.19 E-value=0.048 Score=39.45 Aligned_cols=63 Identities=14% Similarity=0.141 Sum_probs=50.2
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHhhc-------cCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcC
Q psy16295 3 QFNYSFCLVRSEFCADIRKGILLLEELFKT-------ETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIE 71 (128)
Q Consensus 3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~-------~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~e 71 (128)
.++.|+++.... +..+++.++++.++. +.| ...++++.+|..++.+|+|++|+.+++..++.-
T Consensus 30 ~~~l~~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 99 (311)
T 3nf1_A 30 LHNLVIQYASQG---RYEVAVPLCKQALEDLEKTSGHDHP---DVATMLNILALVYRDQNKYKDAANLLNDALAIR 99 (311)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHHCSSSH---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 456777777665 455788888887773 223 678999999999999999999999999999883
No 159
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.10 E-value=0.017 Score=35.95 Aligned_cols=41 Identities=12% Similarity=0.002 Sum_probs=34.6
Q ss_pred HHHHHHHhhhhchHHHHHHHHHHHhcCCCCHH-HHHHHHHHH
Q psy16295 45 YYLAIGNARIKEYTKSLKYCRAFLAIESENSQ-VQHLESIVK 85 (128)
Q Consensus 45 YyLAvg~yklgdY~~A~~~~~~lL~~eP~N~Q-A~~Lk~~Ie 85 (128)
|-.|..+++.|+|++|+.+++.+++.+|++.. +....-.+-
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~ 45 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAY 45 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 56788999999999999999999999999987 655554443
No 160
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.09 E-value=0.014 Score=43.23 Aligned_cols=59 Identities=10% Similarity=0.051 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhch----------HHHHHHHHHHHhcCCCCHHHHHH
Q psy16295 18 DIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEY----------TKSLKYCRAFLAIESENSQVQHL 80 (128)
Q Consensus 18 d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY----------~~A~~~~~~lL~~eP~N~QA~~L 80 (128)
...+++..++..+..+ | ...|.++.++.++.++++| ++|+.+++..|+++|++.++.--
T Consensus 17 ~feeA~~~~~~Ai~l~-P---~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~ 85 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSN-P---LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWC 85 (158)
T ss_dssp HHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHC-C---CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHH
Confidence 3457888999999988 7 6889999999999999875 59999999999999999987643
No 161
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=96.03 E-value=0.063 Score=36.74 Aligned_cols=67 Identities=6% Similarity=0.055 Sum_probs=49.3
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHhhc---c-CccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhc---CCCC
Q psy16295 3 QFNYSFCLVRSEFCADIRKGILLLEELFKT---E-TEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAI---ESEN 74 (128)
Q Consensus 3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~---~-~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~---eP~N 74 (128)
.++.|+......+ ..++++.+++.+.. . .+ .....+++.+|..+..+|+|++|+.+++..+++ .|++
T Consensus 29 ~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 102 (203)
T 3gw4_A 29 RFMLGYVYAFMDR---FDEARASFQALQQQAQKSGDH--TAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPED 102 (203)
T ss_dssp HHHHHHHHHHTTC---HHHHHHHHHHHHHHHHTTCCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHcCCc--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCcc
Confidence 3456666666554 44677777776651 1 11 367789999999999999999999999999998 5544
No 162
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=95.88 E-value=0.037 Score=44.20 Aligned_cols=77 Identities=10% Similarity=0.136 Sum_probs=66.5
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhh--chHHHHHHHHHHHhcCCCCHHHHHH
Q psy16295 3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIK--EYTKSLKYCRAFLAIESENSQVQHL 80 (128)
Q Consensus 3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklg--dY~~A~~~~~~lL~~eP~N~QA~~L 80 (128)
.++|..++.++.... .+++++.+.++.-+ | ..-..+++-......++ +|++++++++.+|+..|+|.|+=.-
T Consensus 35 ~~~~~~a~~~~~e~s--~~aL~~t~~~L~~n-P---~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~ 108 (306)
T 3dra_A 35 IMGLLLALMKAEEYS--ERALHITELGINEL-A---SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNY 108 (306)
T ss_dssp HHHHHHHHHHTTCCS--HHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHH
T ss_pred HHHHHHHHHHcCCCC--HHHHHHHHHHHHHC-c---HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHH
Confidence 356777777776554 37999999999999 7 67889999999999999 9999999999999999999999888
Q ss_pred HHHHH
Q psy16295 81 ESIVK 85 (128)
Q Consensus 81 k~~Ie 85 (128)
+..|-
T Consensus 109 R~~iL 113 (306)
T 3dra_A 109 RQLII 113 (306)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77776
No 163
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.87 E-value=0.031 Score=42.30 Aligned_cols=70 Identities=13% Similarity=-0.072 Sum_probs=51.1
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHHhhccCccc---cchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHH
Q psy16295 5 NYSFCLVRSEFCADIRKGILLLEELFKTETEDI---DRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQV 77 (128)
Q Consensus 5 ~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~---~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA 77 (128)
+.|..+... ..+..++++.+++.++-. |.. ....+++.-++..+.++|+|++|+.+++..+++.|++...
T Consensus 122 ~lg~~~~~~--lg~~~~A~~~~~~Al~~~-~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 194 (292)
T 1qqe_A 122 ELGEILEND--LHDYAKAIDCYELAGEWY-AQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLS 194 (292)
T ss_dssp HHHHHHHHT--TCCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTT
T ss_pred HHHHHHHHh--hcCHHHHHHHHHHHHHHH-HhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcc
Confidence 444444432 134567888888877654 210 1225789999999999999999999999999999998653
No 164
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=95.74 E-value=0.044 Score=41.56 Aligned_cols=67 Identities=10% Similarity=-0.012 Sum_probs=48.6
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHH-HHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHH
Q psy16295 4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRD-YLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQV 77 (128)
Q Consensus 4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd-~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA 77 (128)
++|+..+.+.. +..+++++++..++.. | ...+ .++.++....+.|++++|+..++..++.+|.+.++
T Consensus 103 ~~~~~~~~~~~---~~~~A~~~~~~al~~~-p---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~ 170 (308)
T 2ond_A 103 FAYADYEESRM---KYEKVHSIYNRLLAIE-D---IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHV 170 (308)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHTSS-S---SCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHH
T ss_pred HHHHHHHHhcC---CHHHHHHHHHHHHhcc-c---cCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHH
Confidence 45555555443 4567888888888876 5 2333 67777788888888888888888888888877554
No 165
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=95.71 E-value=0.034 Score=42.53 Aligned_cols=63 Identities=14% Similarity=0.221 Sum_probs=45.7
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHhhccCcc-ccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhc
Q psy16295 4 FNYSFCLVRSEFCADIRKGILLLEELFKTETED-IDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAI 70 (128)
Q Consensus 4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~-~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~ 70 (128)
+..|..+.+.. +..+++..+++.++.+ |+ .....++++.+|..++.+|+|++|+.+++..+++
T Consensus 52 ~~~g~~~~~~g---~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (411)
T 4a1s_A 52 ALEGERLCNAG---DCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTL 115 (411)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC---cHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34455555544 4567888888888876 41 0112368889999999999999999999988887
No 166
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=95.66 E-value=0.053 Score=41.87 Aligned_cols=64 Identities=9% Similarity=0.155 Sum_probs=49.3
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHhh-----ccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCC
Q psy16295 3 QFNYSFCLVRSEFCADIRKGILLLEELFK-----TETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIES 72 (128)
Q Consensus 3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~-----~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP 72 (128)
.++.|++..+.. +..++++.+++.++ .+.| ....+++.+|..++++|+|++|..+++..+++.|
T Consensus 227 ~~~lg~~y~~~g---~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 295 (383)
T 3ulq_A 227 LYNIGLCKNSQS---QYEDAIPYFKRAIAVFEESNILP---SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ 295 (383)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCGG---GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHHHHHhhccch---hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 456777776655 44578888887776 3323 5688999999999999999999999999998854
No 167
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=95.64 E-value=0.091 Score=43.11 Aligned_cols=79 Identities=14% Similarity=0.161 Sum_probs=62.8
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhh-chHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16295 4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIK-EYTKSLKYCRAFLAIESENSQVQHLES 82 (128)
Q Consensus 4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklg-dY~~A~~~~~~lL~~eP~N~QA~~Lk~ 82 (128)
++|--+++++.... .+++++.+.++..+ | ..-..++|-......++ +|++++.+++.+|+.+|.|.|+=.-+.
T Consensus 57 ~~~~r~~~~~~e~s--e~AL~lt~~~L~~n-P---~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~ 130 (349)
T 3q7a_A 57 MDYFRAIAAKEEKS--ERALELTEIIVRMN-P---AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRL 130 (349)
T ss_dssp HHHHHHHHHTTCCS--HHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred HHHHHHHHHhCCCC--HHHHHHHHHHHHhC-c---hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 44555555665443 36899999999998 6 57888899888888888 599999999999999999999987777
Q ss_pred HHHHHH
Q psy16295 83 IVKKRM 88 (128)
Q Consensus 83 ~Ie~~i 88 (128)
.+-.++
T Consensus 131 wlL~~l 136 (349)
T 3q7a_A 131 LLLDRI 136 (349)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 776666
No 168
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=95.58 E-value=0.042 Score=41.39 Aligned_cols=63 Identities=19% Similarity=0.244 Sum_probs=48.3
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHhhccCcc-ccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhc
Q psy16295 4 FNYSFCLVRSEFCADIRKGILLLEELFKTETED-IDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAI 70 (128)
Q Consensus 4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~-~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~ 70 (128)
+..|..+.+.. +..+++..+++.++.. |+ .....++++.+|..++..|+|++|+.+++..+++
T Consensus 13 ~~~g~~~~~~g---~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 76 (406)
T 3sf4_A 13 ALEGERLCKSG---DCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL 76 (406)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc---cHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 55666776665 4558899999988876 41 0123578999999999999999999999998877
No 169
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=95.50 E-value=0.052 Score=39.12 Aligned_cols=63 Identities=19% Similarity=0.244 Sum_probs=43.8
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHhhccCcc-ccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhc
Q psy16295 4 FNYSFCLVRSEFCADIRKGILLLEELFKTETED-IDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAI 70 (128)
Q Consensus 4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~-~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~ 70 (128)
|..|..+.+.. +..+++..+++.++.+ |+ .....++++.+|..++..|+|++|+.+++..++.
T Consensus 9 ~~~g~~~~~~g---~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 72 (338)
T 3ro2_A 9 ALEGERLCKSG---DCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL 72 (338)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc---cHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34455555544 4457888888887775 41 0122578888888888888888888888887776
No 170
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=95.44 E-value=0.04 Score=42.15 Aligned_cols=68 Identities=12% Similarity=0.011 Sum_probs=48.8
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHhhccCcc---ccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCC
Q psy16295 3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETED---IDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESEN 74 (128)
Q Consensus 3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~---~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N 74 (128)
.+++|..+.+..+ ..++++.+++.++.. +. ......+++.+|..+.++|+|++|+.+++..+++.|++
T Consensus 226 ~~~la~~~~~~g~---~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 296 (411)
T 4a1s_A 226 CGNLGNTYYLLGD---FQAAIEHHQERLRIA-REFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVEL 296 (411)
T ss_dssp HHHHHHHHHHTTC---HHHHHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCC---hHHHHHHHHHHHHHH-HhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc
Confidence 3456666666554 446777777766654 20 01233489999999999999999999999999988865
No 171
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=95.42 E-value=0.13 Score=37.54 Aligned_cols=60 Identities=8% Similarity=0.073 Sum_probs=39.1
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhh----hhchHHHHHHHHHHHhcC
Q psy16295 3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNAR----IKEYTKSLKYCRAFLAIE 71 (128)
Q Consensus 3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yk----lgdY~~A~~~~~~lL~~e 71 (128)
.|+++..+.... +..++++.++..++.+ ..+.++.++..+.+ .++|++|+.+++..++..
T Consensus 9 ~~~lg~~~~~~~---~~~~A~~~~~~a~~~~------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~ 72 (273)
T 1ouv_A 9 LVGLGAKSYKEK---DFTQAKKYFEKACDLK------ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN 72 (273)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCC---CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC
Confidence 455666666554 4556777777766633 24667777777777 777777777777776664
No 172
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=95.37 E-value=0.025 Score=43.14 Aligned_cols=67 Identities=9% Similarity=0.021 Sum_probs=49.2
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHhhccCcc---ccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCH
Q psy16295 4 FNYSFCLVRSEFCADIRKGILLLEELFKTETED---IDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENS 75 (128)
Q Consensus 4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~---~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~ 75 (128)
.+.|..+.+ .+..++++.+++.+.-. |. .....++++-+|..+.++|+|++|+.+++..+++.|++.
T Consensus 120 ~~lg~~~~~----g~~~~A~~~~~~Al~~~-~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 189 (307)
T 2ifu_A 120 DRAGKLMEP----LDLSKAVHLYQQAAAVF-ENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEME 189 (307)
T ss_dssp HHHHHHHTT----TCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHc----CCHHHHHHHHHHHHHHH-HhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Confidence 344555433 56677888888766543 20 013368899999999999999999999999999988765
No 173
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=95.32 E-value=0.017 Score=43.52 Aligned_cols=54 Identities=24% Similarity=0.247 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHhh------ccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCC
Q psy16295 18 DIRKGILLLEELFK------TETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESEN 74 (128)
Q Consensus 18 d~~~GI~LL~~l~~------~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N 74 (128)
+..++++.++..++ .+ + ...-..+|.+|..++++|+|++|+.+++..|++.|++
T Consensus 170 ~~~~A~~~~~~al~~~~~~~~~-~--~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~ 229 (293)
T 3u3w_A 170 YLKKGIDLFEQILKQLEALHDN-E--EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI 229 (293)
T ss_dssp CHHHHHHHHHHHHHHHHHSSCC-H--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhcccc-h--hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHc
Confidence 55678888888774 22 2 3566789999999999999999999999999987665
No 174
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=95.31 E-value=0.086 Score=37.96 Aligned_cols=34 Identities=24% Similarity=0.357 Sum_probs=19.2
Q ss_pred chHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCC
Q psy16295 39 RKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIES 72 (128)
Q Consensus 39 ~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP 72 (128)
.....++.+|..+.++|+|++|+.+++..+++.|
T Consensus 261 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 294 (338)
T 3ro2_A 261 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 294 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555555555544
No 175
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=95.28 E-value=0.029 Score=45.26 Aligned_cols=31 Identities=6% Similarity=-0.035 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHhh----hhchHHHHHHHHHHHhcC
Q psy16295 41 RDYLYYLAIGNAR----IKEYTKSLKYCRAFLAIE 71 (128)
Q Consensus 41 rd~LYyLAvg~yk----lgdY~~A~~~~~~lL~~e 71 (128)
.+.+|.|+..+++ .+|+++|+.+++..++..
T Consensus 399 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 399 SAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 3445555555554 455555555555555555
No 176
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.11 E-value=0.056 Score=35.56 Aligned_cols=47 Identities=13% Similarity=-0.072 Sum_probs=41.6
Q ss_pred chHHHHHHHHHHHhhhhc---hHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16295 39 RKRDYLYYLAIGNARIKE---YTKSLKYCRAFLAIESENSQVQHLESIVK 85 (128)
Q Consensus 39 ~~rd~LYyLAvg~yklgd---Y~~A~~~~~~lL~~eP~N~QA~~Lk~~Ie 85 (128)
.+.+.++-+|.+.|..++ .++|+..++..|+.+|+|..+..+.-.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~ 53 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDH 53 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHH
Confidence 568999999999987777 89999999999999999999999885543
No 177
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=95.02 E-value=0.16 Score=34.62 Aligned_cols=62 Identities=11% Similarity=0.001 Sum_probs=39.3
Q ss_pred HHHHHHHHhcc-CChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhh----hhchHHHHHHHHHHHhc
Q psy16295 3 QFNYSFCLVRS-EFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNAR----IKEYTKSLKYCRAFLAI 70 (128)
Q Consensus 3 ~F~YAwaLv~S-~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yk----lgdY~~A~~~~~~lL~~ 70 (128)
+|+++..+.+. ..+.|..++++.++.-.+.+ ..+..|.|+..|.+ .+|+++|+++++...+.
T Consensus 60 ~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g------~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 60 CRFLGDFYENGKYVKKDLRKAAQYYSKACGLN------DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC------CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 45666665542 22456667777777666554 25666777777777 67777777777776665
No 178
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=94.94 E-value=0.092 Score=42.68 Aligned_cols=76 Identities=3% Similarity=-0.151 Sum_probs=57.5
Q ss_pred hHHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhh----hchHHHHHHHHHHHhcCCCCHHH
Q psy16295 2 TQFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARI----KEYTKSLKYCRAFLAIESENSQV 77 (128)
Q Consensus 2 ~~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~ykl----gdY~~A~~~~~~lL~~eP~N~QA 77 (128)
+.++++..+.....+++..++++.++.....+ | ..-..+|.|+..+.+. +|+++|+++++... |+|..+
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~---~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a 250 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-T---VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPAS 250 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-C---SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-C---HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHH
Confidence 35777778877777778888999988888887 3 3455568888888776 78888888888877 777777
Q ss_pred HHHHHHH
Q psy16295 78 QHLESIV 84 (128)
Q Consensus 78 ~~Lk~~I 84 (128)
..-.-.+
T Consensus 251 ~~~Lg~~ 257 (452)
T 3e4b_A 251 WVSLAQL 257 (452)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655544
No 179
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.89 E-value=0.055 Score=41.82 Aligned_cols=74 Identities=7% Similarity=0.036 Sum_probs=57.7
Q ss_pred hHHHHHHHHhccCChhhHHHHHHHHHHHhhccCccc--------------cchHHHHHHHHHHHhhhhchHHHHHHHHHH
Q psy16295 2 TQFNYSFCLVRSEFCADIRKGILLLEELFKTETEDI--------------DRKRDYLYYLAIGNARIKEYTKSLKYCRAF 67 (128)
Q Consensus 2 ~~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~--------------~~~rd~LYyLAvg~yklgdY~~A~~~~~~l 67 (128)
++++-|..|+.+. +..++++.+.++++.. |+. .....+++.|+..|+++|+|++|..++..+
T Consensus 6 ~~l~~a~~l~~~~---~y~eA~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~ 81 (434)
T 4b4t_Q 6 SKLEEARRLVNEK---QYNEAEQVYLSLLDKD-SSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHS 81 (434)
T ss_dssp HHHHHHHHHHHHT---CHHHHHHHHHHHHHSC-CCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHhhC-cccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4567778888776 4557999999998875 320 123457999999999999999999999999
Q ss_pred HhcCCCCHHHHH
Q psy16295 68 LAIESENSQVQH 79 (128)
Q Consensus 68 L~~eP~N~QA~~ 79 (128)
++..|...++..
T Consensus 82 ~~~~~~~~~~~~ 93 (434)
T 4b4t_Q 82 TEYMMQFAKSKT 93 (434)
T ss_dssp HHHHHTSCHHHH
T ss_pred HHHHHHccchHH
Confidence 998887766543
No 180
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=94.82 E-value=0.061 Score=42.88 Aligned_cols=65 Identities=11% Similarity=0.126 Sum_probs=56.9
Q ss_pred hhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchH--HHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16295 17 ADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYT--KSLKYCRAFLAIESENSQVQHLESIVK 85 (128)
Q Consensus 17 ~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~--~A~~~~~~lL~~eP~N~QA~~Lk~~Ie 85 (128)
.+..+.+++++..+..+ | ..-.+++|-....-++++|+ +++.+++.+++.+|.|-.|=.=+..+-
T Consensus 124 ~~~~~EL~~~~~~l~~~-p---kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll 190 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-P---KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLL 190 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-C---CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 45678999999999998 6 78999999999999999999 999999999999999998866554443
No 181
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=94.81 E-value=0.21 Score=38.61 Aligned_cols=76 Identities=12% Similarity=-0.047 Sum_probs=52.6
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHhhccC--ccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHh-----cCCCCHH
Q psy16295 4 FNYSFCLVRSEFCADIRKGILLLEELFKTET--EDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLA-----IESENSQ 76 (128)
Q Consensus 4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~--~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~-----~eP~N~Q 76 (128)
+++|.+.....+ ..++++.+++.++... ++....-.+++.||..+.++|+|++|+.+++..++ .+|.+..
T Consensus 186 ~~lg~~y~~~~~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 262 (378)
T 3q15_A 186 FVIAGNYDDFKH---YDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPK 262 (378)
T ss_dssp HHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHHHHhCC---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHH
Confidence 456666665544 4467777766555310 11134567899999999999999999999999999 7887755
Q ss_pred HHHHHH
Q psy16295 77 VQHLES 82 (128)
Q Consensus 77 A~~Lk~ 82 (128)
+.....
T Consensus 263 ~~~~la 268 (378)
T 3q15_A 263 VLFGLS 268 (378)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444333
No 182
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=94.73 E-value=0.15 Score=34.77 Aligned_cols=65 Identities=8% Similarity=-0.139 Sum_probs=37.6
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHhhcc--CccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcC
Q psy16295 4 FNYSFCLVRSEFCADIRKGILLLEELFKTE--TEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIE 71 (128)
Q Consensus 4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~--~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~e 71 (128)
++.++.+....+ ..+++..+++.+... .++......+++.+|..+.++|+|++|+++++..+++-
T Consensus 111 ~~lg~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 111 YEVATVALHFGD---LAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC---HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 455555555443 335666666554321 01002334556777888888888888888877776653
No 183
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=94.73 E-value=0.25 Score=39.73 Aligned_cols=70 Identities=13% Similarity=0.040 Sum_probs=54.5
Q ss_pred hHHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhh----hhchHHHHHHHHHHHhcCCCCHHH
Q psy16295 2 TQFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNAR----IKEYTKSLKYCRAFLAIESENSQV 77 (128)
Q Consensus 2 ~~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yk----lgdY~~A~~~~~~lL~~eP~N~QA 77 (128)
+.+++++.+.+...+.+..++++.++...+.+ ..+.+|.|+..++. .+|+++|..+++..++.. ++++
T Consensus 330 a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a 401 (490)
T 2xm6_A 330 AQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG------EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAA 401 (490)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHH
T ss_pred HHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHH
Confidence 35677777777666778889999988887765 36789999999998 899999999999988753 4554
Q ss_pred HH
Q psy16295 78 QH 79 (128)
Q Consensus 78 ~~ 79 (128)
..
T Consensus 402 ~~ 403 (490)
T 2xm6_A 402 QV 403 (490)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 184
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=94.64 E-value=0.095 Score=39.26 Aligned_cols=59 Identities=19% Similarity=0.117 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHHhhccC--ccccchHHHHHHHHHHHhhhhchHHHHHHHHHHH---hcCCCCHH
Q psy16295 18 DIRKGILLLEELFKTET--EDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFL---AIESENSQ 76 (128)
Q Consensus 18 d~~~GI~LL~~l~~~~~--~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL---~~eP~N~Q 76 (128)
+..++++.+++.+.... ++....-++++.+|..++++|+|++|+.+++..| +..|+++.
T Consensus 130 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~ 193 (293)
T 2qfc_A 130 DYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEE 193 (293)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred CHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCcccc
Confidence 56689999888775321 1002346799999999999999999999999999 66777653
No 185
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=94.64 E-value=0.16 Score=37.97 Aligned_cols=84 Identities=4% Similarity=-0.012 Sum_probs=54.0
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHhhccC--ccccchHHHHHHHHHHHhhhhchHHH-HHHHHHHHhcCCCCHHHHH
Q psy16295 3 QFNYSFCLVRSEFCADIRKGILLLEELFKTET--EDIDRKRDYLYYLAIGNARIKEYTKS-LKYCRAFLAIESENSQVQH 79 (128)
Q Consensus 3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~--~~~~~~rd~LYyLAvg~yklgdY~~A-~~~~~~lL~~eP~N~QA~~ 79 (128)
-+|+|+++.+..+ ..++++.+++.+.... ++.....++++.+|..+.++|+|++| ..+++..+.+-..... ..
T Consensus 199 ~~nlg~~y~~~~~---y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~~-~~ 274 (293)
T 2qfc_A 199 RYNHAKALYLDSR---YEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEM-HA 274 (293)
T ss_dssp HHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC-HH
T ss_pred HHhHHHHHHHHhh---HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhCc-Hh
Confidence 4677888876654 4477777777654420 11123578999999999999999999 8888877755322111 12
Q ss_pred HHHHHHHHHhh
Q psy16295 80 LESIVKKRMET 90 (128)
Q Consensus 80 Lk~~Ie~~i~k 90 (128)
+.+.|+..+.+
T Consensus 275 ~~~~~~~~~~~ 285 (293)
T 2qfc_A 275 YKEALVNKISR 285 (293)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 35555555543
No 186
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=94.57 E-value=0.18 Score=43.02 Aligned_cols=79 Identities=8% Similarity=0.029 Sum_probs=64.7
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhc----------hHHHHHHHHHHHhcCCCC
Q psy16295 5 NYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKE----------YTKSLKYCRAFLAIESEN 74 (128)
Q Consensus 5 ~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgd----------Y~~A~~~~~~lL~~eP~N 74 (128)
++-.++.++...+ .++++..+.++..+ | ..-..|+|-+....++++ |++|+.+++.+|+.+|.|
T Consensus 33 ~~~~~~~~~~~~~--eeal~~~~~~l~~n-P---~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~ 106 (567)
T 1dce_A 33 QAVFQKRQAGELD--ESVLELTSQILGAN-P---DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS 106 (567)
T ss_dssp HHHHHHHHTTCCS--HHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHcCCCC--HHHHHHHHHHHHHC-c---hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCC
Confidence 3444555554433 47899999999999 7 678899999999999999 999999999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q psy16295 75 SQVQHLESIVKKRME 89 (128)
Q Consensus 75 ~QA~~Lk~~Ie~~i~ 89 (128)
.|+=.=+..+-.++.
T Consensus 107 y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 107 YGTWHHRCWLLSRLP 121 (567)
T ss_dssp HHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHcc
Confidence 999877777666554
No 187
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=94.51 E-value=0.081 Score=44.14 Aligned_cols=64 Identities=9% Similarity=0.034 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhc-----CCCCHHHHHHHHHHH
Q psy16295 19 IRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAI-----ESENSQVQHLESIVK 85 (128)
Q Consensus 19 ~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~-----eP~N~QA~~Lk~~Ie 85 (128)
.++++++.+..+..+-| ..-..++-||..|..+|+|++|..++++.|++ -|+++..+.|...++
T Consensus 363 ~~~aL~i~~~~lG~~Hp---~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 363 GQKIIKPYSKHYPVYSL---NVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHHHHHHHHSCSSCH---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCh---HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence 34455555555555534 56778999999999999999999999999986 499999999988765
No 188
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=94.51 E-value=0.28 Score=37.70 Aligned_cols=73 Identities=10% Similarity=0.158 Sum_probs=49.6
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHhhccC--ccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHh-----cC-CCCH
Q psy16295 4 FNYSFCLVRSEFCADIRKGILLLEELFKTET--EDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLA-----IE-SENS 75 (128)
Q Consensus 4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~--~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~-----~e-P~N~ 75 (128)
+++|.++.... +..++++.+++.++... ++.......++.+|..+.++|+|++|+.+++..|+ .+ |...
T Consensus 188 ~~lg~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 264 (383)
T 3ulq_A 188 SLFATNFLDLK---QYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP 264 (383)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHHhc---CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHH
Confidence 44555555544 44577777777665420 10023446899999999999999999999999999 45 6554
Q ss_pred HHHH
Q psy16295 76 QVQH 79 (128)
Q Consensus 76 QA~~ 79 (128)
.+..
T Consensus 265 ~~~~ 268 (383)
T 3ulq_A 265 QAYF 268 (383)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 189
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=94.49 E-value=0.2 Score=37.49 Aligned_cols=66 Identities=6% Similarity=0.012 Sum_probs=48.3
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHhhccC--ccccchHHHHHHHHHHHhhhh-chHHHHHHHHHHHhcC
Q psy16295 3 QFNYSFCLVRSEFCADIRKGILLLEELFKTET--EDIDRKRDYLYYLAIGNARIK-EYTKSLKYCRAFLAIE 71 (128)
Q Consensus 3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~--~~~~~~rd~LYyLAvg~yklg-dY~~A~~~~~~lL~~e 71 (128)
-+|+++++.+..+ ..++++.+++.+.-.. .+.....++++.+|..++++| +|++|+.+++..|++-
T Consensus 199 ~~nlg~~y~~~~~---y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 199 RYNHAKALYLDSR---YEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 4678888887664 4577777776655420 111245899999999999999 5799999999988753
No 190
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=94.42 E-value=0.22 Score=40.48 Aligned_cols=51 Identities=16% Similarity=0.120 Sum_probs=45.9
Q ss_pred HHHHHHHHHhh-ccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCH
Q psy16295 21 KGILLLEELFK-TETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENS 75 (128)
Q Consensus 21 ~GI~LL~~l~~-~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~ 75 (128)
+++++++..++ .. | ...+.++.++..+.+.|++++|+..++.+|++.|+|.
T Consensus 304 ~A~~~~~~Al~~~~-p---~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 355 (530)
T 2ooe_A 304 EAANIYERAISTLL-K---KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDP 355 (530)
T ss_dssp HHHHHHHHHTTTTC-S---SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCH
T ss_pred HHHHHHHHHHHHhC-c---ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCc
Confidence 78999999997 45 6 5788899999999999999999999999999999986
No 191
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=94.42 E-value=0.16 Score=43.39 Aligned_cols=67 Identities=13% Similarity=0.229 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhh--chHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy16295 18 DIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIK--EYTKSLKYCRAFLAIESENSQVQHLESIVKKRM 88 (128)
Q Consensus 18 d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklg--dY~~A~~~~~~lL~~eP~N~QA~~Lk~~Ie~~i 88 (128)
...+.++.++..++.+ | .....|++-+....+++ +|++|+.+++.+|+.+|.|-.|=.=+..+-.++
T Consensus 88 ~~~~eL~~~~~~l~~~-p---K~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l 156 (567)
T 1dce_A 88 LVKAELGFLESCLRVN-P---KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQA 156 (567)
T ss_dssp HHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhC-C---CCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHc
Confidence 3788999999999988 6 68899999999999999 669999999999999999998887776665544
No 192
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=94.37 E-value=0.23 Score=37.20 Aligned_cols=67 Identities=10% Similarity=0.081 Sum_probs=41.3
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHhhccC--ccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCC
Q psy16295 4 FNYSFCLVRSEFCADIRKGILLLEELFKTET--EDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESE 73 (128)
Q Consensus 4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~--~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~ 73 (128)
+++|..+.+..+ ..++++.+++.+.... ++......+++.+|..+.++|+|++|+.+++..+++.|+
T Consensus 271 ~~la~~~~~~g~---~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 339 (406)
T 3sf4_A 271 YSLGNTYTLLQD---YEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 339 (406)
T ss_dssp HHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCc---HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 455555555443 3456666666554320 000234667788888888888888888888887777543
No 193
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=94.27 E-value=0.087 Score=42.88 Aligned_cols=52 Identities=12% Similarity=-0.009 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCC
Q psy16295 19 IRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESEN 74 (128)
Q Consensus 19 ~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N 74 (128)
..+++.+++..++.. | ...+.+..++--..++|++++|+..++..++..|.+
T Consensus 407 ~~~A~~~~e~al~~~-p---~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~ 458 (530)
T 2ooe_A 407 KSVAFKIFELGLKKY-G---DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 458 (530)
T ss_dssp HHHHHHHHHHHHHHH-T---TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSC
T ss_pred hhHHHHHHHHHHHHC-C---CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCC
Confidence 345555555555554 3 334555555555555555555555555555554444
No 194
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.20 E-value=0.092 Score=42.86 Aligned_cols=54 Identities=17% Similarity=0.014 Sum_probs=48.5
Q ss_pred hhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhh-hchHHHHHHHHHHHhcCCC
Q psy16295 17 ADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARI-KEYTKSLKYCRAFLAIESE 73 (128)
Q Consensus 17 ~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~ykl-gdY~~A~~~~~~lL~~eP~ 73 (128)
.|..++.++|+.-+.-+ | ...-|..|++|-.+++. |||++|+++++..|+..|.
T Consensus 218 Gd~ekA~~~ferAL~Ln-P--~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 218 GGMEKAHTAFEHLTRYC-S--AHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp CCHHHHHHHHHHHHHHC-C--TTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred CCHHHHHHHHHHHHHhC-C--CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 47789999999999999 7 35599999999999995 9999999999999998887
No 195
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=93.85 E-value=0.21 Score=40.47 Aligned_cols=77 Identities=14% Similarity=0.164 Sum_probs=56.0
Q ss_pred HHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhc-hHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16295 7 SFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKE-YTKSLKYCRAFLAIESENSQVQHLESIVK 85 (128)
Q Consensus 7 AwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgd-Y~~A~~~~~~lL~~eP~N~QA~~Lk~~Ie 85 (128)
.|.|-+-..+ +..+.+++++.++..+ | ..-.+|+|-.....+++. +++++.+++.+++.+|.|..|=.=+..+-
T Consensus 115 ~wlL~~l~~~-~~~~EL~~~~k~l~~d-p---rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll 189 (331)
T 3dss_A 115 CWLLSRLPEP-NWARELELCARFLEAD-E---RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLL 189 (331)
T ss_dssp HHHHHHCSSC-CHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred HHHHhccCcc-cHHHHHHHHHHHHHhC-C---CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 3555444322 4567888888888887 5 678888888888888888 58888888888888888888865555444
Q ss_pred HHH
Q psy16295 86 KRM 88 (128)
Q Consensus 86 ~~i 88 (128)
.++
T Consensus 190 ~~l 192 (331)
T 3dss_A 190 PQL 192 (331)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
No 196
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=93.69 E-value=0.18 Score=40.93 Aligned_cols=66 Identities=14% Similarity=0.252 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhh--chHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy16295 19 IRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIK--EYTKSLKYCRAFLAIESENSQVQHLESIVKKRM 88 (128)
Q Consensus 19 ~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklg--dY~~A~~~~~~lL~~eP~N~QA~~Lk~~Ie~~i 88 (128)
..+.+.+++.++..+ | .....|++-.....+++ +|++++.+|+.+|+.+|.|-.|=.=+..+-...
T Consensus 90 l~~EL~~~~~~L~~~-P---Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l 157 (331)
T 3dss_A 90 VKAELGFLESCLRVN-P---KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQA 157 (331)
T ss_dssp HHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhC-C---CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 678999999999998 6 68999999999999999 499999999999999999999977666654443
No 197
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=93.68 E-value=0.16 Score=41.26 Aligned_cols=69 Identities=6% Similarity=-0.112 Sum_probs=39.3
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhh-----chHHHHHHHHHHHhcCCCCHHH
Q psy16295 3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIK-----EYTKSLKYCRAFLAIESENSQV 77 (128)
Q Consensus 3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklg-----dY~~A~~~~~~lL~~eP~N~QA 77 (128)
.|+++..+.....+.|..++++.++...+.+ ..+..|.|+..+. .| |+++|+++++... |++..+
T Consensus 251 ~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g------~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A 320 (452)
T 3e4b_A 251 WVSLAQLLYDFPELGDVEQMMKYLDNGRAAD------QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAA 320 (452)
T ss_dssp HHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHH
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHH
Confidence 4555555333333556666666666655443 2556666666665 44 6666666666666 666655
Q ss_pred HHHH
Q psy16295 78 QHLE 81 (128)
Q Consensus 78 ~~Lk 81 (128)
.--.
T Consensus 321 ~~~L 324 (452)
T 3e4b_A 321 DYYL 324 (452)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5433
No 198
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=93.17 E-value=0.42 Score=39.12 Aligned_cols=69 Identities=12% Similarity=0.098 Sum_probs=61.0
Q ss_pred hHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhh-h-chHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q psy16295 18 DIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARI-K-EYTKSLKYCRAFLAIESENSQVQHLESIVKKRMET 90 (128)
Q Consensus 18 d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~ykl-g-dY~~A~~~~~~lL~~eP~N~QA~~Lk~~Ie~~i~k 90 (128)
+..+.+++++.++..+ | ..-..+++-.....++ + ++++++.+++.+|+.+|.|..|=.-+.-+-.++.+
T Consensus 104 ~l~eEL~~~~~~L~~n-P---Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~ 174 (349)
T 3q7a_A 104 SLEDELRLMNEFAVQN-L---KSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFST 174 (349)
T ss_dssp CHHHHHHHHHHHHHTT-C---CCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhC-C---CcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc
Confidence 5778999999999998 6 6899999999999998 8 99999999999999999999998877777666544
No 199
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=92.81 E-value=0.41 Score=36.34 Aligned_cols=68 Identities=10% Similarity=-0.088 Sum_probs=47.0
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHhhccC--cc--ccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCC
Q psy16295 4 FNYSFCLVRSEFCADIRKGILLLEELFKTET--ED--IDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESEN 74 (128)
Q Consensus 4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~--~~--~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N 74 (128)
++.++.+.... +..++++.+++.+.... ++ ......+++.+|..++..|+|++|+.+++..|++.|..
T Consensus 97 ~~la~~~~~~G---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 168 (373)
T 1hz4_A 97 IQQSEILFAQG---FLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY 168 (373)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcc
Confidence 45566655544 44567777777665421 00 01345677789999999999999999999999988763
No 200
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=92.53 E-value=0.52 Score=37.50 Aligned_cols=31 Identities=6% Similarity=-0.090 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhhhhchHHHHHHHHHHHhcC
Q psy16295 41 RDYLYYLAIGNARIKEYTKSLKYCRAFLAIE 71 (128)
Q Consensus 41 rd~LYyLAvg~yklgdY~~A~~~~~~lL~~e 71 (128)
.+..|+++.++.++|++++|+++++..+.-.
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~ 201 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSP 201 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC
Confidence 5678888888888888888888888887543
No 201
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=92.39 E-value=0.81 Score=38.63 Aligned_cols=67 Identities=10% Similarity=0.026 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHH
Q psy16295 19 IRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAI-----ESENSQVQHLESIVKKRM 88 (128)
Q Consensus 19 ~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~-----eP~N~QA~~Lk~~Ie~~i 88 (128)
.++++++.+..+..+-| ..-..++-||..|..+|+|++|..++++.|++ =|+++....+..++....
T Consensus 374 ~~~aL~i~~~~lG~~Hp---~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~ 445 (490)
T 3n71_A 374 ARRMVDGYMKLYHHNNA---QLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTE 445 (490)
T ss_dssp HHHHHHHHHHHSCTTCH---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCH---HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 34555566666665534 57788999999999999999999999999975 699999998887776544
No 202
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=92.24 E-value=0.55 Score=38.77 Aligned_cols=64 Identities=11% Similarity=0.108 Sum_probs=48.9
Q ss_pred HHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHH
Q psy16295 21 KGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAI-----ESENSQVQHLESIVKKR 87 (128)
Q Consensus 21 ~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~-----eP~N~QA~~Lk~~Ie~~ 87 (128)
+.+++.+..+..+-| ..--.++-||..|..+|+|++|+.+++..|++ =|+++..+.+...++.-
T Consensus 354 ~~L~i~~~~lg~~Hp---~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~ 422 (429)
T 3qwp_A 354 RTMEPYRIFFPGSHP---VRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEEC 422 (429)
T ss_dssp HHHHHHHHHSCSSCH---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHH
T ss_pred HHHHhHHHHcCCCCh---HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 344444444444434 56778999999999999999999999998875 68999999887766553
No 203
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=92.10 E-value=0.3 Score=39.51 Aligned_cols=59 Identities=27% Similarity=0.320 Sum_probs=45.8
Q ss_pred HHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCC--CCHHHHHHHHHH
Q psy16295 22 GILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIES--ENSQVQHLESIV 84 (128)
Q Consensus 22 GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP--~N~QA~~Lk~~I 84 (128)
++.-|++++..+ + .....++++|..++..|+|++|++.+...+...| ++..+..+.--|
T Consensus 85 a~~~l~~l~~~~-~---~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi 145 (310)
T 3mv2_B 85 NIEELENLLKDK-Q---NSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEV 145 (310)
T ss_dssp CCHHHHHTTTTS-C---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-C---CCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHH
Confidence 567778877765 2 2355678999999999999999999999999887 666666555444
No 204
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=92.09 E-value=0.77 Score=34.44 Aligned_cols=67 Identities=18% Similarity=0.106 Sum_probs=46.6
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHhhccCcc---ccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhc
Q psy16295 3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETED---IDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAI 70 (128)
Q Consensus 3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~---~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~ 70 (128)
-|+-.-.|....--+++.--..+|-.+..++ |+ ....-+-++|+|-++|..++|.+|..++++.|+.
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~-~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNN-PELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-TTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCC-cccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 3444455555555555555566666665554 32 1356679999999999999999999999997643
No 205
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=90.65 E-value=0.82 Score=30.20 Aligned_cols=66 Identities=14% Similarity=0.168 Sum_probs=44.1
Q ss_pred cCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q psy16295 13 SEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIVKKRMET 90 (128)
Q Consensus 13 S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~Ie~~i~k 90 (128)
|++.+-.++||+++..-+..+.. .+-.+ |+ .-|.+|+.++..+++.||+...-..+++.|.+=+.|
T Consensus 10 ~~~~~~~~~Ai~lv~~Ave~D~~--g~y~e-----Al-----~lY~~aie~l~~alk~e~d~~~k~~ir~K~~eY~~R 75 (83)
T 2w2u_A 10 SAQVMLEEMARKYAINAVKADKE--GNAEE-----AI-----TNYKKAIEVLAQLVSLYRDGSTAAIYEQMINEYKRR 75 (83)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHT--TCHHH-----HH-----HHHHHHHHHHHHHHHHSTTSSTHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHh--ccHHH-----HH-----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 56677788999998887666521 11111 22 224566667788888899888877788887766554
No 206
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=90.62 E-value=0.97 Score=37.61 Aligned_cols=67 Identities=10% Similarity=0.068 Sum_probs=45.3
Q ss_pred HHHHHhccCChhhHHHHHHHHHHHhhccCcccc---------------------------------------chHHHHHH
Q psy16295 6 YSFCLVRSEFCADIRKGILLLEELFKTETEDID---------------------------------------RKRDYLYY 46 (128)
Q Consensus 6 YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~---------------------------------------~~rd~LYy 46 (128)
-|+.++...++++..+++++|++.++.+ |+.. ...+-..|
T Consensus 202 ra~~~l~~~~~~~~~~A~~l~e~Al~lD-P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~ 280 (372)
T 3ly7_A 202 QAHDYLLHGDDKSLNRASELLGEIVQSS-PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIY 280 (372)
T ss_dssp HHHHHHHHCSHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHH
Confidence 3667777778899999999999988888 6410 01111122
Q ss_pred --HHHHHhhhhchHHHHHHHHHHHhcCCC
Q psy16295 47 --LAIGNARIKEYTKSLKYCRAFLAIESE 73 (128)
Q Consensus 47 --LAvg~yklgdY~~A~~~~~~lL~~eP~ 73 (128)
+|+.+.-.||+++|+.++++.|+++|+
T Consensus 281 ~alal~~l~~gd~d~A~~~l~rAl~Ln~s 309 (372)
T 3ly7_A 281 QIKAVSALVKGKTDESYQAINTGIDLEMS 309 (372)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 444455568888888888888888875
No 207
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=89.43 E-value=2.3 Score=34.10 Aligned_cols=78 Identities=10% Similarity=0.054 Sum_probs=59.4
Q ss_pred HHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHH-HHHHHHHH
Q psy16295 9 CLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQH-LESIVKKR 87 (128)
Q Consensus 9 aLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~-Lk~~Ie~~ 87 (128)
.|.++. +...+|+.+++-+|.+ | ..-+.--.|--=.+=.||+++|.+=++.+.+.+|+...... ++++|...
T Consensus 6 ~ll~~g---~L~~al~~~~~~VR~~-P---~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE 78 (273)
T 1zbp_A 6 NALSEG---QLQQALELLIEAIKAS-P---KDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAA 78 (273)
T ss_dssp HHTTTT---CHHHHHHHHHHHHHTC-T---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred HHHhCC---CHHHHHHHHHHHHHhC-C---cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHH
Confidence 344444 4557899999999998 6 33444444444467789999999999999999999988774 49999988
Q ss_pred HhhhHH
Q psy16295 88 METEGL 93 (128)
Q Consensus 88 i~kdGl 93 (128)
+.|.-+
T Consensus 79 ~~R~~v 84 (273)
T 1zbp_A 79 QARKDF 84 (273)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888543
No 208
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=88.59 E-value=2.4 Score=31.96 Aligned_cols=64 Identities=5% Similarity=-0.125 Sum_probs=45.8
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHhhccCccc--cchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcC
Q psy16295 4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDI--DRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIE 71 (128)
Q Consensus 4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~--~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~e 71 (128)
.++|+.+.... +..++...+++.+... +.. .....+++.+|..+...|+|++|+.+++..+++.
T Consensus 139 ~~la~~~~~~g---~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~ 204 (373)
T 1hz4_A 139 RIRAQLLWAWA---RLDEAEASARSGIEVL-SSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLL 204 (373)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHHT-TTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc---CHHHHHHHHHHHHHHh-hccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 34555555554 4557778887766553 100 1245788899999999999999999999999873
No 209
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=87.97 E-value=2.1 Score=34.68 Aligned_cols=63 Identities=16% Similarity=0.097 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHH-------HhcCCCCHHHHHHHHHHH
Q psy16295 18 DIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAF-------LAIESENSQVQHLESIVK 85 (128)
Q Consensus 18 d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~l-------L~~eP~N~QA~~Lk~~Ie 85 (128)
+..+++..++.++..+ | .+-+.+..|-.++++.|++.+|++.++.+ |-++| .+.-+.|.+.|-
T Consensus 186 ~~~~a~~~l~~~~~~~-P---~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P-~~~l~~l~~~il 255 (388)
T 2ff4_A 186 RASAVIAELEALTFEH-P---YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDP-GPTLRALNERIL 255 (388)
T ss_dssp CHHHHHHHHHHHHHHS-T---TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCC-CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHH
Confidence 3456788899998888 7 56778889999999999999999886664 45677 455556665554
No 210
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=87.94 E-value=3.1 Score=28.00 Aligned_cols=54 Identities=11% Similarity=0.055 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhh----hhchHHHHHHHHHHHhcCCCCHHHHH
Q psy16295 18 DIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNAR----IKEYTKSLKYCRAFLAIESENSQVQH 79 (128)
Q Consensus 18 d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yk----lgdY~~A~~~~~~lL~~eP~N~QA~~ 79 (128)
++.++++.++.-.+.+ ..+..|.|+..|.+ .+|+++|+++++...+. .+.++..
T Consensus 40 ~~~~A~~~~~~Aa~~g------~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~ 97 (138)
T 1klx_A 40 NKQKLFQYLSKACELN------SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCL 97 (138)
T ss_dssp CHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHH
T ss_pred CHHHHHHHHHHHHcCC------CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHH
Confidence 3444777777766654 35777888888887 78888888888877665 4555543
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=87.77 E-value=0.59 Score=38.85 Aligned_cols=64 Identities=9% Similarity=0.009 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHHhhc-------cCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhc-----CCCCHHHHHHHHHH
Q psy16295 18 DIRKGILLLEELFKT-------ETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAI-----ESENSQVQHLESIV 84 (128)
Q Consensus 18 d~~~GI~LL~~l~~~-------~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~-----eP~N~QA~~Lk~~I 84 (128)
+..+++.++++.+.. +-| ..-..+.-||..|..+|+|++|..+++..|++ =|+++.......-+
T Consensus 313 ~~~eA~~~~~~~L~i~~~~lg~~Hp---~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 388 (433)
T 3qww_A 313 SPSELLEICELSQEKMSSVFEDSNV---YMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL 388 (433)
T ss_dssp CHHHHHHHHHHHHHHHTTTBCTTSH---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhCccChhch---HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 345667777665543 213 45678899999999999999999999999975 46666655544433
No 212
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=87.77 E-value=1.5 Score=35.35 Aligned_cols=62 Identities=13% Similarity=0.120 Sum_probs=48.4
Q ss_pred hhHHHHHHHHHHHhhcc---------CccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16295 17 ADIRKGILLLEELFKTE---------TEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESI 83 (128)
Q Consensus 17 ~d~~~GI~LL~~l~~~~---------~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~ 83 (128)
.+..++-+.|+.+.+.. .| ...|.+.-+.+..+-+|+ +|.++++++.+.+|+++=...+.+.
T Consensus 225 g~~~eAe~~L~~l~~~~p~~~~k~~~~p---~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~~~k 295 (310)
T 3mv2_B 225 RNIAEAQGIVELLLSDYYSVEQKENAVL---YKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHHQEI 295 (310)
T ss_dssp TCHHHHHHHHHHHHSHHHHTTTCHHHHS---SHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcccccccccCCC---CCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHHHHH
Confidence 34556777777665542 14 578999777777777898 9999999999999999999888765
No 213
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=87.76 E-value=1.3 Score=36.08 Aligned_cols=57 Identities=11% Similarity=-0.010 Sum_probs=49.0
Q ss_pred hhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhh-----hchHHHHHHHHHHHhcCCCC
Q psy16295 16 CADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARI-----KEYTKSLKYCRAFLAIESEN 74 (128)
Q Consensus 16 ~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~ykl-----gdY~~A~~~~~~lL~~eP~N 74 (128)
-..+.++..+++.-++-+ |+ -...-++-+|+.-|++. ||.++|+++.++.|++.|++
T Consensus 176 l~~l~~A~a~lerAleLD-P~-~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~ 237 (301)
T 3u64_A 176 PDTVHAAVMMLERACDLW-PS-YQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAH 237 (301)
T ss_dssp HHHHHHHHHHHHHHHHHC-TT-HHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTT
T ss_pred HHhHHHHHHHHHHHHHhC-CC-cccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCC
Confidence 456778899999999988 62 23566999999999996 99999999999999999976
No 214
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=87.62 E-value=1.3 Score=38.89 Aligned_cols=49 Identities=14% Similarity=0.151 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q psy16295 41 RDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIVKKRME 89 (128)
Q Consensus 41 rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~Ie~~i~ 89 (128)
.|-+.-.|-.++..|||.-|...++.++..||+|.+|+.|+.-.-+++.
T Consensus 449 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~ 497 (658)
T 2cfu_A 449 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLG 497 (658)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 4667777888999999999999999999999999999999988776664
No 215
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=86.40 E-value=1.6 Score=32.77 Aligned_cols=37 Identities=11% Similarity=0.204 Sum_probs=34.4
Q ss_pred cchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCC
Q psy16295 38 DRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESEN 74 (128)
Q Consensus 38 ~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N 74 (128)
.++-.|+||++.-+.-.+||.+|.......++.-|++
T Consensus 11 ~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~ 47 (203)
T 3t5x_A 11 AQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS 47 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh
Confidence 5789999999999999999999999999999998865
No 216
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=85.18 E-value=1.4 Score=32.31 Aligned_cols=54 Identities=13% Similarity=0.014 Sum_probs=44.2
Q ss_pred ChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhh---chHHHHHHHHHHHhcC-C
Q psy16295 15 FCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIK---EYTKSLKYCRAFLAIE-S 72 (128)
Q Consensus 15 ~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklg---dY~~A~~~~~~lL~~e-P 72 (128)
+++++++.-+-.++-+..+ + ...|..|-+|.+..+.+ ++.++...++.+++.+ |
T Consensus 10 ~~~~l~~~~~~y~~e~~~~-~---~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p 67 (152)
T 1pc2_A 10 SVEDLLKFEKKFQSEKAAG-S---VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSK 67 (152)
T ss_dssp CHHHHHHHHHHHHHHHHTT-C---CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCH
T ss_pred CHHHHHHHHHHHHHHHccC-C---CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCc
Confidence 5666666666666666655 3 57999999999999988 8999999999999999 7
No 217
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.40 E-value=3.5 Score=31.51 Aligned_cols=57 Identities=12% Similarity=0.106 Sum_probs=43.4
Q ss_pred hhhHHHHHHHHHHHhhccC--ccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCC
Q psy16295 16 CADIRKGILLLEELFKTET--EDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIES 72 (128)
Q Consensus 16 ~~d~~~GI~LL~~l~~~~~--~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP 72 (128)
..+..+++.++++++.... ++....-+++..++-.|..+|||++|+.+.+..+.+.|
T Consensus 148 ~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 206 (434)
T 4b4t_Q 148 KKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAAN 206 (434)
T ss_dssp HTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhh
Confidence 3456788888888776521 11135678899999999999999999999999988743
No 218
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=84.15 E-value=0.96 Score=38.17 Aligned_cols=63 Identities=13% Similarity=0.078 Sum_probs=44.8
Q ss_pred hhHHHHHHHHHHHhhc-------cCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhc-----CCCCHHHHHHHH
Q psy16295 17 ADIRKGILLLEELFKT-------ETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAI-----ESENSQVQHLES 82 (128)
Q Consensus 17 ~d~~~GI~LL~~l~~~-------~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~-----eP~N~QA~~Lk~ 82 (128)
.+..+++.++++.+.. +-| ..-..+.-||..|..+|+|++|..+++..|++ -|+++.......
T Consensus 323 g~~~eA~~l~~~aL~~~~~~lg~~Hp---~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 323 GLYHEVVKLCRECLEKQEPVFADTNL---YVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp TCHHHHHHHHHHHHHHHTTTBCTTSH---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3445666666655543 323 46778899999999999999999999999976 366666544433
No 219
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=80.28 E-value=3.5 Score=34.24 Aligned_cols=55 Identities=4% Similarity=-0.115 Sum_probs=47.0
Q ss_pred hhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHH
Q psy16295 17 ADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQ 76 (128)
Q Consensus 17 ~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~Q 76 (128)
.+..+|+..++.-+.-+ | .-..+..++..+.-.|++++|...++..++++|..+.
T Consensus 291 gd~d~A~~~l~rAl~Ln-~----s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 291 GKTDESYQAINTGIDLE-M----SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp TCHHHHHHHHHHHHHHC-C----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred CCHHHHHHHHHHHHhcC-C----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 66778899999888887 5 2456678899999999999999999999999999874
No 220
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=79.48 E-value=1.9 Score=33.69 Aligned_cols=33 Identities=24% Similarity=0.417 Sum_probs=29.3
Q ss_pred chHHHHHHHHHHHhhhhchHHHHHHHHHHH--hcC
Q psy16295 39 RKRDYLYYLAIGNARIKEYTKSLKYCRAFL--AIE 71 (128)
Q Consensus 39 ~~rd~LYyLAvg~yklgdY~~A~~~~~~lL--~~e 71 (128)
+.--..||=++++++++||.+|...++.+| ++|
T Consensus 60 NT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd 94 (242)
T 3kae_A 60 NTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVE 94 (242)
T ss_dssp CBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSB
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 456778999999999999999999999999 555
No 221
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=79.26 E-value=3.1 Score=34.18 Aligned_cols=67 Identities=6% Similarity=-0.054 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHhhccC----ccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhc-----CCCCHHHHHHHHHH
Q psy16295 18 DIRKGILLLEELFKTET----EDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAI-----ESENSQVQHLESIV 84 (128)
Q Consensus 18 d~~~GI~LL~~l~~~~~----~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~-----eP~N~QA~~Lk~~I 84 (128)
+..+++++++..+.... |+-...-+.+.-||..|..+|+|++|..+++.+|++ =|+++.......-+
T Consensus 302 ~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nL 377 (429)
T 3qwp_A 302 KWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKV 377 (429)
T ss_dssp CHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHH
Confidence 44677888877764310 100245678899999999999999999999999976 36666655544433
No 222
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=78.32 E-value=12 Score=24.73 Aligned_cols=66 Identities=18% Similarity=0.188 Sum_probs=41.3
Q ss_pred cCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q psy16295 13 SEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIVKKRMET 90 (128)
Q Consensus 13 S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~Ie~~i~k 90 (128)
|..+....++|+++..-+..+.. .+-. -|+- -|.+|+.++-..++.+|+...-..|+..+.+=+.|
T Consensus 6 ~~~~~~l~~Ai~lv~~Ave~D~~--g~y~-----eAl~-----~Y~~Aie~l~~alk~e~~~~~k~~l~~K~~eYl~R 71 (93)
T 1wfd_A 6 SGQDSDSTAAVAVLKRAVELDAE--SRYQ-----QALV-----CYQEGIDMLLQVLKGTKESSKRCVLRTKISGYMDR 71 (93)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHT--TCHH-----HHHH-----HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHh--CCHH-----HHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 35566777888888876666521 1111 1222 24566667778888898877766677777655544
No 223
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=77.52 E-value=4.9 Score=26.16 Aligned_cols=61 Identities=15% Similarity=0.151 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q psy16295 18 DIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIVKKRMET 90 (128)
Q Consensus 18 d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~Ie~~i~k 90 (128)
-..+||+++..-+..+.. .+-.+ |+ .-|.+|+.++..+++.+|+...-..+++.|.+=+.|
T Consensus 7 ~~~~Ai~lv~~Ave~D~~--g~y~e-----Al-----~lY~~aie~l~~~lk~e~d~~~k~~ir~K~~eY~~R 67 (83)
T 2v6y_A 7 LEDMARKYAILAVKADKE--GKVED-----AI-----TYYKKAIEVLSQIIVLYPESVARTAYEQMINEYKKR 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHT--TCHHH-----HH-----HHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh--ccHHH-----HH-----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 356788888876665421 11111 22 224566667778888899888777788887765554
No 224
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=77.27 E-value=2.1 Score=27.58 Aligned_cols=31 Identities=13% Similarity=0.061 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHhhhhchHHHHHHHHHHHhcC
Q psy16295 40 KRDYLYYLAIGNARIKEYTKSLKYCRAFLAIE 71 (128)
Q Consensus 40 ~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~e 71 (128)
..|| |-|+..+|+.++|.+|....+..|+..
T Consensus 5 a~dc-~~lG~~~~~~~~y~~A~~W~~~Al~~~ 35 (104)
T 2v5f_A 5 AEDC-FELGKVAYTEADYYHTELWMEQALRQL 35 (104)
T ss_dssp HHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHccchHHHHHHHHHHHHhh
Confidence 4566 689999999999999999999999875
No 225
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=75.04 E-value=4.3 Score=33.36 Aligned_cols=36 Identities=17% Similarity=0.291 Sum_probs=30.4
Q ss_pred HHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16295 50 GNARIKEYTKSLKYCRAFLAIESENSQVQHLESIVK 85 (128)
Q Consensus 50 g~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~Ie 85 (128)
-.||.+||..|-.++++||+..|....+..-++.+.
T Consensus 216 ~a~K~KNy~tAa~fArrLLel~p~~~~a~qArkil~ 251 (325)
T 3mv2_A 216 QHFKHKNFLQASYFAGEFLKIISSGPRAEQARKIKN 251 (325)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCCSSHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 379999999999999999999998777766665554
No 226
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=69.83 E-value=5 Score=36.12 Aligned_cols=47 Identities=17% Similarity=0.132 Sum_probs=36.9
Q ss_pred hhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHH
Q psy16295 17 ADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAF 67 (128)
Q Consensus 17 ~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~l 67 (128)
.+..-|+++=..-+.-. | ..=+|||.||-.|.++|||++|+-.++.+
T Consensus 351 ~~~elAL~~Ak~AV~~a-P---seF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 351 GDYELALGVSNTSTELA-L---DSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp TCHHHHHHHHHHHHHHC-S---SCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred CcHHHHHHHHHHHHhcC-c---hhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34445666666666666 6 56899999999999999999999887766
No 227
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=69.64 E-value=5.5 Score=32.60 Aligned_cols=35 Identities=14% Similarity=0.291 Sum_probs=28.2
Q ss_pred HHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16295 50 GNARIKEYTKSLKYCRAFLAIESENSQVQHLESIV 84 (128)
Q Consensus 50 g~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~I 84 (128)
-.||.+||..|-.+.++||+..|....+..-++.+
T Consensus 207 ~a~K~KNy~tAa~fArrLLel~p~~~~~~qArkil 241 (320)
T 3mkr_B 207 LFFKLKNFRTAAAFARRLLELGPKPEVAQQTRKIL 241 (320)
T ss_dssp HHHHTTBHHHHHHHHHHHHHTCCCHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 37999999999999999999999766555544444
No 228
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=71.50 E-value=1 Score=39.79 Aligned_cols=49 Identities=8% Similarity=0.120 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q psy16295 41 RDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIVKKRME 89 (128)
Q Consensus 41 rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~Ie~~i~ 89 (128)
.|-+.-.|-.++..|||.-|...++.++..||+|.+|+.|+.-.-+++.
T Consensus 461 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~ 509 (668)
T 2yhe_A 461 ADAVLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLG 509 (668)
Confidence 4556666788899999999999999999999999999999887755553
No 229
>1j2j_B ADP-ribosylation factor binding protein GGA1, ADP-ribosylation factor 1; protein transport; HET: GTP; 1.60A {Homo sapiens} SCOP: a.7.8.1
Probab=66.13 E-value=5 Score=24.02 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=23.1
Q ss_pred HHHhccCChhhHHHHHHHHHHHhhcc
Q psy16295 8 FCLVRSEFCADIRKGILLLEELFKTE 33 (128)
Q Consensus 8 waLv~S~~~~d~~~GI~LL~~l~~~~ 33 (128)
.-|++|.+|+|.+.+=.|....++++
T Consensus 14 ~~Ll~s~~P~Dlq~AN~LiK~mv~ed 39 (45)
T 1j2j_B 14 ARLLKSSHPEDLRAANKLIKEMVQED 39 (45)
T ss_dssp HHHHTCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCChhhHHHHHHHHHHHhhHH
Confidence 46899999999999999999988776
No 230
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=63.77 E-value=9.5 Score=22.58 Aligned_cols=29 Identities=21% Similarity=0.125 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHHHH---HhhHHHhhhhhhc
Q psy16295 91 EGLKGMALAGGAVLAQ---GQGTMEMSCKSYK 119 (128)
Q Consensus 91 dGliG~~i~gga~~~~---g~~~~~~~~~~~~ 119 (128)
-+.|..+++||.++.+ +....++-|+.-+
T Consensus 9 ~~aIA~gVVgGv~~v~ii~~~~~~~~RRRr~~ 40 (44)
T 2l2t_A 9 TPLIAAGVIGGLFILVIVGLTFAVYVRRKSIK 40 (44)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred cceEEEeehHHHHHHHHHHHHHHHHhhhhhhh
Confidence 4567788888876322 2334555555433
No 231
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=62.77 E-value=6.6 Score=34.10 Aligned_cols=37 Identities=27% Similarity=0.378 Sum_probs=33.4
Q ss_pred chHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCH
Q psy16295 39 RKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENS 75 (128)
Q Consensus 39 ~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~ 75 (128)
..-.|+||++.-+.-+++|.+|.+++...++.-|.+.
T Consensus 268 q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 268 LEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS 304 (523)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence 4578999999999999999999999999999888654
No 232
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=62.10 E-value=14 Score=29.69 Aligned_cols=41 Identities=7% Similarity=-0.189 Sum_probs=34.2
Q ss_pred chHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHH
Q psy16295 39 RKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQH 79 (128)
Q Consensus 39 ~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~ 79 (128)
...+++.-++-.+...|+|.+|...++.++..+|-+..+..
T Consensus 169 ~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~ 209 (388)
T 2ff4_A 169 DKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWT 209 (388)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 34566777788889999999999999999999999976443
No 233
>2lbg_A Major prion protein; conserved hydrophobic region, membrane protei; NMR {Homo sapiens}
Probab=61.64 E-value=12 Score=20.12 Aligned_cols=22 Identities=36% Similarity=0.262 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHH--hhHHHhhh
Q psy16295 94 KGMALAGGAVLAQG--QGTMEMSC 115 (128)
Q Consensus 94 iG~~i~gga~~~~g--~~~~~~~~ 115 (128)
+|.+.+|.++-++| .+|..|||
T Consensus 4 ~ga~AAGaVvGglGgy~lg~~ms~ 27 (27)
T 2lbg_A 4 AGAAAAGAVVGGLGGYMLGSAMSR 27 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhhhhhhhhhHHHHHHHHhcC
Confidence 45444443332233 34566664
No 234
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=60.42 E-value=19 Score=26.73 Aligned_cols=26 Identities=15% Similarity=0.114 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhhhhchHHHHHHHHH
Q psy16295 41 RDYLYYLAIGNARIKEYTKSLKYCRA 66 (128)
Q Consensus 41 rd~LYyLAvg~yklgdY~~A~~~~~~ 66 (128)
.|+-|-+|.+|.+++++++|+...+.
T Consensus 122 ~Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 122 IEVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 38999999999999999999988554
No 235
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=59.01 E-value=15 Score=23.56 Aligned_cols=63 Identities=19% Similarity=0.253 Sum_probs=38.3
Q ss_pred hhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q psy16295 16 CADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIVKKRMET 90 (128)
Q Consensus 16 ~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~Ie~~i~k 90 (128)
++...+++.++..-+..+.. .+ |--|+ .-|.+|..++-..++.+|+...-..|++.+.+-+.|
T Consensus 7 ~~~l~~A~~l~~~Av~~D~~--g~-----y~eAl-----~~Y~~aie~l~~a~k~e~~~~~k~~l~~k~~eYl~R 69 (85)
T 2v6x_A 7 GDFLTKGIELVQKAIDLDTA--TQ-----YEEAY-----TAYYNGLDYLMLALKYEKNPKSKDLIRAKFTEYLNR 69 (85)
T ss_dssp SCHHHHHHHHHHHHHHHHHT--TC-----HHHHH-----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHc--CC-----HHHHH-----HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 45667788887776555411 11 11122 224456666777778888777667788888776665
No 236
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=58.59 E-value=17 Score=23.82 Aligned_cols=34 Identities=18% Similarity=0.278 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q psy16295 57 YTKSLKYCRAFLAIESENSQVQHLESIVKKRMET 90 (128)
Q Consensus 57 Y~~A~~~~~~lL~~eP~N~QA~~Lk~~Ie~~i~k 90 (128)
|.+|..++-.+++.+|+..--..|++.|.+=+.|
T Consensus 39 Y~~Aie~ll~alk~e~d~~~k~~lr~K~~eYl~R 72 (86)
T 4a5x_A 39 YQEGIDLLLQVLKGTKDNTKRCNLREKISKYMDR 72 (86)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH
Confidence 4566677778888898766666677777766655
No 237
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=58.39 E-value=20 Score=24.80 Aligned_cols=62 Identities=15% Similarity=0.304 Sum_probs=38.4
Q ss_pred hhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHHhh
Q psy16295 17 ADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQ-VQHLESIVKKRMET 90 (128)
Q Consensus 17 ~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~Q-A~~Lk~~Ie~~i~k 90 (128)
....++|+++..-+..+.. .+ |--|+ .-|.+|..++-.+++.+|.|+. -..|++.+.+-+.|
T Consensus 13 ~~l~kAi~lv~~Ave~D~a--g~-----y~eAl-----~lY~~Aie~l~~alk~e~~~~~~k~~lr~K~~eYl~R 75 (117)
T 2cpt_A 13 PNLQKAIDLASKAAQEDKA--GN-----YEEAL-----QLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDR 75 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHH--TC-----HHHHH-----HHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHc--cC-----HHHHH-----HHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Confidence 4577888888776655411 11 11122 2355667777788888977776 45677777766655
No 238
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=54.69 E-value=6 Score=23.38 Aligned_cols=28 Identities=11% Similarity=-0.009 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHH---HHHhhHHHhhhhhhc
Q psy16295 92 GLKGMALAGGAVL---AQGQGTMEMSCKSYK 119 (128)
Q Consensus 92 GliG~~i~gga~~---~~g~~~~~~~~~~~~ 119 (128)
+.|..+++||.++ ++++..+++-|++-|
T Consensus 11 ~~IA~gVVgGv~~~~ii~~~~~~~~RRr~~~ 41 (44)
T 2ks1_B 11 PSIATGMVGALLLLLVVALGIGLFMRRRHIV 41 (44)
T ss_dssp SSSTHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred ceEEeehhHHHHHHHHHHHHHHHHhhhhHhh
Confidence 4566778887663 223335566665544
No 239
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=54.42 E-value=17 Score=30.71 Aligned_cols=37 Identities=11% Similarity=0.042 Sum_probs=33.5
Q ss_pred cchHHHHHHHHHHHhhhhchHHHHHHHHHHHhc-CCCC
Q psy16295 38 DRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAI-ESEN 74 (128)
Q Consensus 38 ~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~-eP~N 74 (128)
.++..|+||++.=+.-.+||.+|-......++. -|.+
T Consensus 217 ~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 217 DQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred cceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 467899999999999999999999999999998 6654
No 240
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=54.34 E-value=10 Score=24.80 Aligned_cols=19 Identities=21% Similarity=0.433 Sum_probs=15.9
Q ss_pred HhhhhchHHHHHHHHHHHh
Q psy16295 51 NARIKEYTKSLKYCRAFLA 69 (128)
Q Consensus 51 ~yklgdY~~A~~~~~~lL~ 69 (128)
+..+|||+.|+.|++.+++
T Consensus 22 ~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 22 YALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHTCCHHHHHHHHHHHH
T ss_pred HHHhcChHHHHHHHHHHHH
Confidence 5778999999999877765
No 241
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=54.05 E-value=28 Score=30.44 Aligned_cols=22 Identities=9% Similarity=-0.022 Sum_probs=13.5
Q ss_pred chHHHHHHHHHHHhcCCCCHHH
Q psy16295 56 EYTKSLKYCRAFLAIESENSQV 77 (128)
Q Consensus 56 dY~~A~~~~~~lL~~eP~N~QA 77 (128)
|++.|++.++..|+.-|++...
T Consensus 485 d~e~Ar~ife~~Lk~~p~~~~~ 506 (679)
T 4e6h_A 485 DTKTACKVLELGLKYFATDGEY 506 (679)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHHHHCCCchHH
Confidence 3666666666666666665543
No 242
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=52.95 E-value=43 Score=31.16 Aligned_cols=61 Identities=20% Similarity=0.291 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHHhhccCccccchHH-HHHHHHHHHhhhhchHHHHHHHHH---HHhcCCCCHHHHHHH
Q psy16295 18 DIRKGILLLEELFKTETEDIDRKRD-YLYYLAIGNARIKEYTKSLKYCRA---FLAIESENSQVQHLE 81 (128)
Q Consensus 18 d~~~GI~LL~~l~~~~~~~~~~~rd-~LYyLAvg~yklgdY~~A~~~~~~---lL~~eP~N~QA~~Lk 81 (128)
++...|..+|+|+++.. ...|+ +-...+.-||-+|+|++|++|.=. +..++-...=++.|-
T Consensus 49 eia~~i~~ie~l~ed~~---f~~r~laalvaSkvyy~Lg~~~~al~yaL~aG~~fd~~~~seYv~tii 113 (963)
T 4ady_A 49 EISNELPDIEALYDDDT---FSDREMAALIASKVYYNLGEYESAVKYALAAKDRFDIDEKSQFVETIV 113 (963)
T ss_dssp HHHTTHHHHHHHHSCTT---CTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHGGGSCTTSCSHHHHHHH
T ss_pred HHHhhHHHHHHHHcCCC---cchHHHHHHHHHHHheeccchHHHHHHHHhCCCcCCCCCcchHHHHHH
Confidence 45566778888888874 34455 455566889999999999999433 455554444444444
No 243
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=51.54 E-value=56 Score=32.24 Aligned_cols=81 Identities=7% Similarity=0.094 Sum_probs=0.0
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCC---------
Q psy16295 4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESEN--------- 74 (128)
Q Consensus 4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N--------- 74 (128)
++||.++..-. ++.++|+-.+. . ...+.++-++-.+.++|+|++|.+|+.+..+++|+.
T Consensus 1109 sqLAKAql~~G---~~kEAIdsYiK------A---dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~Lafa 1176 (1630)
T 1xi4_A 1109 SQLAKAQLQKG---MVKEAIDSYIK------A---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFA 1176 (1630)
T ss_pred HHHHHHHHhCC---CHHHHHHHHHh------c---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHH
Q ss_pred ----HHHHHHHHHHHHHHhhhHHHHHH
Q psy16295 75 ----SQVQHLESIVKKRMETEGLKGMA 97 (128)
Q Consensus 75 ----~QA~~Lk~~Ie~~i~kdGliG~~ 97 (128)
.|-.++...| +....+.+..+|
T Consensus 1177 YAKl~rleele~fI-~~~n~ad~~~iG 1202 (1630)
T 1xi4_A 1177 LAKTNRLAELEEFI-NGPNNAHIQQVG 1202 (1630)
T ss_pred HHhhcCHHHHHHHH-hCCCHHHHHHHH
No 244
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=49.45 E-value=12 Score=22.98 Aligned_cols=18 Identities=28% Similarity=0.350 Sum_probs=15.8
Q ss_pred hhhHHHHHHHHHHHhhcc
Q psy16295 16 CADIRKGILLLEELFKTE 33 (128)
Q Consensus 16 ~~d~~~GI~LL~~l~~~~ 33 (128)
.+|+.|+|+||+.+-+++
T Consensus 6 ~RDv~RaiELle~lq~sg 23 (53)
T 1zl8_A 6 ERDVQRILELMEHVQKTG 23 (53)
T ss_dssp HHHHHHHHHHHHHHGGGS
T ss_pred HHHHHHHHHHHHHHHHcC
Confidence 469999999999998876
No 245
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=49.22 E-value=35 Score=27.79 Aligned_cols=50 Identities=10% Similarity=0.265 Sum_probs=39.3
Q ss_pred HHHHHHhhhhchHHHHHHHHHHHhcCC-----CCHHHHHHHHHHHHHHhhhHHHHHH
Q psy16295 46 YLAIGNARIKEYTKSLKYCRAFLAIES-----ENSQVQHLESIVKKRMETEGLKGMA 97 (128)
Q Consensus 46 yLAvg~yklgdY~~A~~~~~~lL~~eP-----~N~QA~~Lk~~Ie~~i~kdGliG~~ 97 (128)
-.|.-+++.|++++|+...+.+|..-| ++.+..+++++|+ +.+|-++||-
T Consensus 107 k~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~--icreYilal~ 161 (320)
T 3mkr_B 107 QLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLIT--ICREYIVGLS 161 (320)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHH--HHHHHHHHHH
Confidence 346778999999999999999999886 4567777888875 5667777763
No 246
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=46.81 E-value=37 Score=29.73 Aligned_cols=49 Identities=8% Similarity=0.016 Sum_probs=26.3
Q ss_pred HHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCH
Q psy16295 23 ILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENS 75 (128)
Q Consensus 23 I~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~ 75 (128)
|..|++-+..+ | ..-+.|.-++-..-+.++++.+|..++.+|..-|.+.
T Consensus 52 i~~lE~~l~~n-p---~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~ 100 (679)
T 4e6h_A 52 IGKLNDMIEEQ-P---TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMA 100 (679)
T ss_dssp HHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHC-c---CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCH
Confidence 44455555555 4 3455554444444445556666666666666666554
No 247
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=45.91 E-value=50 Score=27.16 Aligned_cols=53 Identities=8% Similarity=0.021 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHH
Q psy16295 19 IRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQ 76 (128)
Q Consensus 19 ~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~Q 76 (128)
..+...+++..+... | ...+.|+-.|-=.-+.|+.++|+..+++.++. |.+..
T Consensus 195 ~~Rv~~~ye~al~~~-p---~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~ 247 (493)
T 2uy1_A 195 ESRMHFIHNYILDSF-Y---YAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMF 247 (493)
T ss_dssp HHHHHHHHHHHHHHT-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSH
T ss_pred HHHHHHHHHHHHHcC-C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHH
Confidence 456677888888877 6 45788887777778899999999999999999 99863
No 248
>2kxe_A DNA polymerase II small subunit; D-family, archara, helical BU transferase; HET: DNA; NMR {Pyrococcus horikoshii}
Probab=44.94 E-value=16 Score=23.80 Aligned_cols=33 Identities=18% Similarity=0.275 Sum_probs=26.0
Q ss_pred HHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHH
Q psy16295 24 LLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKS 60 (128)
Q Consensus 24 ~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A 60 (128)
++.++|+++++ .-.-.-|||=+.|||-|+++-|
T Consensus 6 elVk~L~~n~Y----LiTPsAYyLL~~~ykkg~FsL~ 38 (75)
T 2kxe_A 6 EFVKGLMKNGY----LITPSAYYLLVGHFNEGKFSLI 38 (75)
T ss_dssp HHHHHHHTTTC----EECHHHHHHHHHHHHTTSSCHH
T ss_pred HHHHHHHHCCc----eeCchHHHHHHHHhhcccccHH
Confidence 46778899987 3455678899999999999654
No 249
>2npu_A FKBP12-rapamycin complex-associated protein; four-helix bundle, transferase; NMR {Homo sapiens}
Probab=43.33 E-value=53 Score=23.23 Aligned_cols=67 Identities=16% Similarity=0.313 Sum_probs=45.2
Q ss_pred hhHHHHHHHHHHH---hhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHhh
Q psy16295 17 ADIRKGILLLEEL---FKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESE--NSQVQHLESIVKKRMET 90 (128)
Q Consensus 17 ~d~~~GI~LL~~l---~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~--N~QA~~Lk~~Ie~~i~k 90 (128)
.|+..-++.|+.| +..+ | +..+|.-+.-++| .+-.+|+.+|+...+..-. -.||=.+-.-|-++|.+
T Consensus 54 ~n~~~m~~~L~pLh~~l~~~-P--eT~~E~sF~~~fG----~~L~~A~~~~~~y~~t~d~~~lnqAWd~Y~~Vf~rI~k 125 (126)
T 2npu_A 54 RNVKGMFEVLEPLHAMMERG-P--QTLKETSFNQAYG----RDLMEAQEWCRKYMKSGNVKDLTQAWDLYYHVFRRISK 125 (126)
T ss_dssp TCHHHHHHHHHHHHHHHHHS-C--CCHHHHHHHHHHH----HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHHHccC-C--CCHHHHHHHHHHh----HHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHhc
Confidence 4555666777666 4434 4 4566665555554 6889999999998855433 34888888888888765
No 250
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=42.81 E-value=95 Score=22.62 Aligned_cols=62 Identities=15% Similarity=0.256 Sum_probs=37.8
Q ss_pred HHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHH-hcCCCCHHH
Q psy16295 9 CLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFL-AIESENSQV 77 (128)
Q Consensus 9 aLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL-~~eP~N~QA 77 (128)
-|+||.+|+|.+++=.|+...++.+ . .+.|..--+.- -+..-.+-.+.+..+| ...|.+...
T Consensus 24 ~Lirs~~PeDL~~AN~LiK~m~~~d-~---~r~e~~~k~~s---eLe~V~~nv~LL~EML~~~~pg~~~~ 86 (158)
T 1naf_A 24 RLLKSSHPEDLRAANKLIKEMVQED-Q---KRMEKISKRVN---AIEEVNNNVKLLTEMVMSHSQGGAAA 86 (158)
T ss_dssp HHHSSCSTTHHHHHHHHHHHHHHHH-H---HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHTTTC----
T ss_pred HHHhcCChhhHHHHHHHHHHHhccc-h---hhHHHHHHHHH---HHHHHHHHHHHHHHHHHhcCCCcCCC
Confidence 5899999999999999999999876 2 45555443332 2222233344555555 456765543
No 251
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=41.54 E-value=98 Score=24.40 Aligned_cols=48 Identities=15% Similarity=0.304 Sum_probs=32.6
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHH--HHHHHHHhhhh
Q psy16295 3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYL--YYLAIGNARIK 55 (128)
Q Consensus 3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~L--YyLAvg~yklg 55 (128)
-||||..+.+.++.++...-...++++++.. . ..|-+ ...|+|..--+
T Consensus 215 ~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~-~----d~EalyR~LvALGtL~~~ 264 (304)
T 3ebb_A 215 ALNYSVCFHKDHNIEGKAQCLSLISTILEVV-Q----DLEATFRLLVALGTLISD 264 (304)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHHTTC-C----CHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhcCCchHHHHHHHHHHHHHhcc-C----CHHHHHHHHHHHHHHHhC
Confidence 4899999999887766666677777777765 2 23544 45666666543
No 252
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=41.27 E-value=82 Score=26.03 Aligned_cols=56 Identities=7% Similarity=0.071 Sum_probs=37.0
Q ss_pred hhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHh--cCCCC
Q psy16295 16 CADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLA--IESEN 74 (128)
Q Consensus 16 ~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~--~eP~N 74 (128)
..++.++.+++++....+-+ -..-.+--|--++.+.|+.++|.+.++.+.+ +.|+-
T Consensus 83 ~~~l~~A~~lf~~M~~~G~~---Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~ 140 (501)
T 4g26_A 83 NPGLSRGFDIFKQMIVDKVV---PNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRL 140 (501)
T ss_dssp CHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCH
T ss_pred cchHHHHHHHHHHHHHhCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcc
Confidence 34577888888887776532 1233444455578888888888888887765 35553
No 253
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=40.51 E-value=53 Score=26.80 Aligned_cols=50 Identities=10% Similarity=0.157 Sum_probs=39.6
Q ss_pred HHHHHhhhhchHHHHHHHHHHHhcCC-----CCHHHHHHHHHHHHHHhhhHHHHHHH
Q psy16295 47 LAIGNARIKEYTKSLKYCRAFLAIES-----ENSQVQHLESIVKKRMETEGLKGMAL 98 (128)
Q Consensus 47 LAvg~yklgdY~~A~~~~~~lL~~eP-----~N~QA~~Lk~~Ie~~i~kdGliG~~i 98 (128)
.|.-+++.|++++|+...+.+|..-| ++.+..+++++|+ +.+|-++||-|
T Consensus 120 ~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~--icrEYilal~i 174 (325)
T 3mv2_A 120 EGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILE--TAREYILGLSI 174 (325)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 36678999999999999999988754 5678888888885 56777777643
No 254
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=40.46 E-value=40 Score=22.37 Aligned_cols=38 Identities=18% Similarity=0.302 Sum_probs=27.0
Q ss_pred chHHHHHHHHHHHhc-----------CCCCHHHHHHHHHHHHHHhhhHH
Q psy16295 56 EYTKSLKYCRAFLAI-----------ESENSQVQHLESIVKKRMETEGL 93 (128)
Q Consensus 56 dY~~A~~~~~~lL~~-----------eP~N~QA~~Lk~~Ie~~i~kdGl 93 (128)
+.++|++-.+..|.- ..++.||++|.++|.+-.+|-|+
T Consensus 30 eleralqelekalaragarnvqitisaendeqakelleliarllqklgy 78 (96)
T 2jvf_A 30 ELERALQELEKALARAGARNVQITISAENDEQAKELLELIARLLQKLGY 78 (96)
T ss_dssp HHHHHHHHHHHHHHHHTCSEEEEEEECSSHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhccccceEEEEEecChHHHHHHHHHHHHHHHHhCC
Confidence 455566665555532 34678999999999998888665
No 255
>3d0w_A YFLH protein; GRAM-positive bacterium, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Bacillus subtilis}
Probab=39.57 E-value=23 Score=24.63 Aligned_cols=28 Identities=18% Similarity=0.194 Sum_probs=22.6
Q ss_pred HHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16295 50 GNARIKEYTKSLKYCRAFLAIESENSQVQHLESIVK 85 (128)
Q Consensus 50 g~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~Ie 85 (128)
..|++|+|- .=+.||.|+|-+-|+++=+
T Consensus 56 ~A~~iGdyL--------A~~vdP~N~EerlLkELW~ 83 (104)
T 3d0w_A 56 SAAILGDYL--------AKHEEPQNGEEMLLQELWS 83 (104)
T ss_dssp HHHHHHHHH--------HTCCCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHH--------HHcCCCCCHHHHHHHHHHH
Confidence 567888883 3468999999999999865
No 256
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=38.88 E-value=35 Score=23.33 Aligned_cols=28 Identities=11% Similarity=0.003 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHhhhhchHHHHHHHHHH
Q psy16295 40 KRDYLYYLAIGNARIKEYTKSLKYCRAF 67 (128)
Q Consensus 40 ~rd~LYyLAvg~yklgdY~~A~~~~~~l 67 (128)
.-...++=|+-..|.|||++|...++..
T Consensus 19 ~ArS~~~eAl~~Ak~g~fe~A~~~l~eA 46 (105)
T 2e2a_A 19 DARSKLLEALKAAENGDFAKADSLVVEA 46 (105)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3556788899999999999999987654
No 257
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=38.18 E-value=34 Score=23.33 Aligned_cols=28 Identities=14% Similarity=0.195 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHhhhhchHHHHHHHHHH
Q psy16295 40 KRDYLYYLAIGNARIKEYTKSLKYCRAF 67 (128)
Q Consensus 40 ~rd~LYyLAvg~yklgdY~~A~~~~~~l 67 (128)
.-...++=|+-..|.|||++|...++..
T Consensus 17 ~Ars~~~eAl~~Ak~g~fe~A~~~l~eA 44 (103)
T 1wcr_A 17 QARSLAYAALKQAKQGDFAAAKAMMDQS 44 (103)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4556788899999999999999987653
No 258
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=37.87 E-value=26 Score=22.81 Aligned_cols=8 Identities=13% Similarity=0.547 Sum_probs=3.9
Q ss_pred HHHHHHHH
Q psy16295 96 MALAGGAV 103 (128)
Q Consensus 96 ~~i~gga~ 103 (128)
+|++||++
T Consensus 15 ~gvi~gil 22 (79)
T 2knc_B 15 LSVMGAIL 22 (79)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 45555533
No 259
>1pfi_A Major coat protein of PF1 virus; complex(viral coat protein/DNA), helical virus; HET: DC; 3.00A {Pseudomonas phage PF1} SCOP: h.1.4.1 PDB: 1ifn_A 1ifm_A* 1pjf_A 1ql1_A 1ql2_A 1zn5_A 2ifm_A 2ifn_A 2klv_A 2ksj_A 2xkm_A 3ifm_A 4ifm_A
Probab=36.79 E-value=42 Score=19.82 Aligned_cols=24 Identities=29% Similarity=0.174 Sum_probs=15.1
Q ss_pred HHHHHHHHHHH-HHHHhhHHHhhhh
Q psy16295 93 LKGMALAGGAV-LAQGQGTMEMSCK 116 (128)
Q Consensus 93 liG~~i~gga~-~~~g~~~~~~~~~ 116 (128)
-||-.|||..+ +.++.+.+-|-||
T Consensus 21 si~~~IVGaLvil~VAGLiysm~RK 45 (46)
T 1pfi_A 21 AIGGYIVGALVILAVAGLIYSMLRK 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46666777655 5566666666665
No 260
>4f52_E Glomulin; cullin-ring E3 ligase, inhibitor, cell cycle-ligase-signalin complex; 3.00A {Homo sapiens}
Probab=36.02 E-value=2.1e+02 Score=24.71 Aligned_cols=94 Identities=12% Similarity=0.071 Sum_probs=61.9
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccch-----------HHHHHHHHHHHhhhhchHHHHHHHHHHHhcCC
Q psy16295 4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRK-----------RDYLYYLAIGNARIKEYTKSLKYCRAFLAIES 72 (128)
Q Consensus 4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~-----------rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP 72 (128)
..|...|+.+....-+.+|+++++.++..-.+.+-.. -..+--+.+.+=-......|.+.+...++.-|
T Consensus 319 l~~l~~lL~~~~~~~~~kGL~Ll~~ll~~l~~~sl~~~~ld~~~~~~~~q~L~~v~~~~P~~~lR~~a~~vl~~~I~~~~ 398 (596)
T 4f52_E 319 MGHIEVFLQRTEESVISKGLELLENSLLRIEDNSLLYQYLEIKSFLTVPQGLVKVMTLCPIETLRKKSLAMLQLYINKLD 398 (596)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHHHHHHSSCTTCBCGGGGGSHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHBC
T ss_pred HHHHHHHHcCCchHHHHhHHHHHHHHHHhccCccCChhhhchhhHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHhCC
Confidence 4578888999999999999999998887742221000 11122223333344567788999999999998
Q ss_pred CCHHHHHHHHHHHHHHhhhHHHHHHH
Q psy16295 73 ENSQVQHLESIVKKRMETEGLKGMAL 98 (128)
Q Consensus 73 ~N~QA~~Lk~~Ie~~i~kdGliG~~i 98 (128)
+...-.-|+.+++ ....+|+.|.+|
T Consensus 399 ~e~R~~iL~~LL~-~~~~~~v~~~lI 423 (596)
T 4f52_E 399 SQGKYTLFRCLLN-TSNHSGVEAFII 423 (596)
T ss_dssp HHHHHHHHHHHHH-HHCCHHHHHHHH
T ss_pred hHHHHHHHHHHHh-cCCChHHHHHHH
Confidence 6555555566655 456688887643
No 261
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=35.03 E-value=1.7e+02 Score=24.13 Aligned_cols=62 Identities=15% Similarity=0.048 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHh--cCCCCHHHHHHHHH
Q psy16295 19 IRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLA--IESENSQVQHLESI 83 (128)
Q Consensus 19 ~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~--~eP~N~QA~~Lk~~ 83 (128)
..++.+++++..+.+-. -....+--|=-++.+.|+.++|.+.++.+-+ .+|+......|...
T Consensus 156 ~~~A~~l~~~M~~~G~~---Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~ 219 (501)
T 4g26_A 156 ADKAYEVDAHMVESEVV---PEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEW 219 (501)
T ss_dssp HHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCC---CCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHH
Confidence 34555555555544321 1122222233355555555555555555532 45554444444443
No 262
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=34.99 E-value=36 Score=18.77 Aligned_cols=15 Identities=27% Similarity=-0.055 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHH
Q psy16295 92 GLKGMALAGGAVLAQ 106 (128)
Q Consensus 92 GliG~~i~gga~~~~ 106 (128)
+.|..++++|.++.+
T Consensus 13 ~~I~~~vv~Gv~ll~ 27 (41)
T 2k9y_A 13 LAVIGGVAVGVVLLL 27 (41)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred EEEEeehhHHHHHHH
Confidence 445566677776544
No 263
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=34.26 E-value=21 Score=29.08 Aligned_cols=37 Identities=14% Similarity=-0.015 Sum_probs=30.9
Q ss_pred chHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCH
Q psy16295 39 RKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENS 75 (128)
Q Consensus 39 ~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~ 75 (128)
..|+.++-+|--+++.|||++|.+.+..+...-+...
T Consensus 129 e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~ 165 (429)
T 4b4t_R 129 EQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTG 165 (429)
T ss_dssp CCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChH
Confidence 4788999999999999999999999888776544443
No 264
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=33.83 E-value=1.3e+02 Score=22.36 Aligned_cols=36 Identities=17% Similarity=0.170 Sum_probs=26.1
Q ss_pred HHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHH
Q psy16295 25 LLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYC 64 (128)
Q Consensus 25 LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~ 64 (128)
++.+++.++ + -+.+.|+=+|.+|-|+|+-.+|-...
T Consensus 113 i~~~~l~n~-~---~~~~~l~kia~Ay~Klg~~r~a~eLl 148 (172)
T 1wy6_A 113 IGREILKNN-E---VSASILVAIANALRRVGDERDATTLL 148 (172)
T ss_dssp HHHHHC--C-C---SCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHhccC-C---CChHHHHHHHHHHHHhcchhhHHHHH
Confidence 344555555 2 46999999999999999998886553
No 265
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=33.61 E-value=91 Score=22.86 Aligned_cols=43 Identities=16% Similarity=0.329 Sum_probs=30.8
Q ss_pred HHHHHHHHHhhccCccccchHHHHHHHHH--HHhhhhchHHHHHHHHHHHh
Q psy16295 21 KGILLLEELFKTETEDIDRKRDYLYYLAI--GNARIKEYTKSLKYCRAFLA 69 (128)
Q Consensus 21 ~GI~LL~~l~~~~~~~~~~~rd~LYyLAv--g~yklgdY~~A~~~~~~lL~ 69 (128)
.++.-+-+.+|.. +.|.+..|-+ |+..+|+|++|+.|++.+.+
T Consensus 16 ~~~~~~~~~LR~q------rHdf~NkLqvI~GLlql~~ydea~~yI~~~~~ 60 (192)
T 1ixm_A 16 ALTNELIHLLGHS------RHDWMNKLQLIKGNLSLQKYDRVFEMIEEMVI 60 (192)
T ss_dssp HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444555544 5677776654 88999999999999988754
No 266
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=32.98 E-value=49 Score=22.75 Aligned_cols=28 Identities=7% Similarity=-0.101 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHhhhhchHHHHHHHHHH
Q psy16295 40 KRDYLYYLAIGNARIKEYTKSLKYCRAF 67 (128)
Q Consensus 40 ~rd~LYyLAvg~yklgdY~~A~~~~~~l 67 (128)
.-...++=|+-..|.|||++|.+.++..
T Consensus 21 ~Ars~~~eAl~~Ak~gdfe~A~~~l~eA 48 (109)
T 3k1s_A 21 NARSFAMEALQFAKQGKMAEADEAMVKA 48 (109)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3456778899999999999999987654
No 267
>2llm_A Amyloid beta A4 protein; alzheimer'S disease, protein fibril; NMR {Homo sapiens} PDB: 2loh_A
Probab=38.05 E-value=9.8 Score=22.55 Aligned_cols=28 Identities=18% Similarity=0.149 Sum_probs=17.5
Q ss_pred hhhHHHHHHHHHHHHHHHHhhHHHhhhh
Q psy16295 89 ETEGLKGMALAGGAVLAQGQGTMEMSCK 116 (128)
Q Consensus 89 ~kdGliG~~i~gga~~~~g~~~~~~~~~ 116 (128)
.+..+||+.++|-++..+-+++..|-||
T Consensus 15 srga~iGL~v~gVai~~vIVvsl~mlRr 42 (43)
T 2llm_A 15 NKGAIIGLMVGGVVIATVIVITLVMLKK 42 (43)
Confidence 6778999877664444444556655544
No 268
>3l8r_A PTCA, putative PTS system, cellobiose-specific IIA component; helix; 2.50A {Streptococcus mutans} SCOP: a.7.2.0
Probab=30.28 E-value=57 Score=22.91 Aligned_cols=28 Identities=14% Similarity=0.048 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHhhhhchHHHHHHHHHH
Q psy16295 40 KRDYLYYLAIGNARIKEYTKSLKYCRAF 67 (128)
Q Consensus 40 ~rd~LYyLAvg~yklgdY~~A~~~~~~l 67 (128)
.-...++=|+-..|.|||++|...++..
T Consensus 36 ~ARS~~~eAl~~Ak~gdfe~A~~~l~eA 63 (120)
T 3l8r_A 36 NARSIVHEAFDAMREKNYILAEQKLQEA 63 (120)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3556778899999999999999987654
No 269
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=30.20 E-value=1.7e+02 Score=21.78 Aligned_cols=60 Identities=15% Similarity=0.265 Sum_probs=38.8
Q ss_pred HHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHH-hcCCCCH
Q psy16295 9 CLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFL-AIESENS 75 (128)
Q Consensus 9 aLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL-~~eP~N~ 75 (128)
-|+||.+|+|.+++=.|+...++.+ . .+.|..--+.- -+..-.+..+.+..+| ...|.+.
T Consensus 40 eLirs~~PeDL~~AN~LiK~m~~~d-~---~r~e~~~k~~~---eLe~V~~nv~LL~EML~~~~pg~~ 100 (186)
T 1oxz_A 40 RLLKSSHPEDLRAANKLIKEMVQED-Q---KRMEKISKRVN---AIEEVNNNVKLLTEMVMSHSQGGA 100 (186)
T ss_dssp HHHSCCSHHHHHHHHHHHHHHHHHH-H---HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHTSSSCS
T ss_pred HHhcCCChhhHHHHHHHHHHHhccc-h---hhHHHHHHHHH---HHHHHHHHHHHHHHHHHhcCCCcc
Confidence 5899999999999999999988876 2 45555443332 3333333445555555 4556544
No 270
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=30.02 E-value=51 Score=27.11 Aligned_cols=63 Identities=13% Similarity=0.041 Sum_probs=36.2
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhh-chHHHHHHHHHHHhcCCCCH
Q psy16295 5 NYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIK-EYTKSLKYCRAFLAIESENS 75 (128)
Q Consensus 5 ~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklg-dY~~A~~~~~~lL~~eP~N~ 75 (128)
.|+.-+.+.. +..++..+++.. +. |+ ...+.+-..|.--++.+ |++.||..++..++.-|+++
T Consensus 291 ~y~~~~~r~~---~~~~AR~i~~~A-~~--~~--~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~ 354 (493)
T 2uy1_A 291 NHLNYVLKKR---GLELFRKLFIEL-GN--EG--VGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDST 354 (493)
T ss_dssp HHHHHHHHHH---CHHHHHHHHHHH-TT--SC--CCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHcC---CHHHHHHHHHHh-hC--CC--CChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCH
Confidence 3555554433 466677777776 32 21 11222222244444555 68888888888888888765
No 271
>3aei_A Prefoldin beta subunit 2; double helix, coiled coil, chaperone; 1.70A {Thermococcus SP}
Probab=29.11 E-value=1.1e+02 Score=20.52 Aligned_cols=28 Identities=14% Similarity=0.248 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q psy16295 59 KSLKYCRAFLAIESENSQVQHLESIVKKRMET 90 (128)
Q Consensus 59 ~A~~~~~~lL~~eP~N~QA~~Lk~~Ie~~i~k 90 (128)
+|.+.++.-|+ -+|.+.|++.|+=+|+.
T Consensus 2 eav~ayel~le----l~qir~lr~~~elkmke 29 (99)
T 3aei_A 2 EAVRAYELQLE----LQQIRTLRQSLELKMKE 29 (99)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 35555555444 47999999999999876
No 272
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=27.17 E-value=1.1e+02 Score=23.91 Aligned_cols=50 Identities=16% Similarity=0.268 Sum_probs=38.1
Q ss_pred cchHHHHHHHHHHH-hhhhchHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHH
Q psy16295 38 DRKRDYLYYLAIGN-ARIKEYTKSLKYCRAFLAIESENSQ-VQHLESIVKKR 87 (128)
Q Consensus 38 ~~~rd~LYyLAvg~-yklgdY~~A~~~~~~lL~~eP~N~Q-A~~Lk~~Ie~~ 87 (128)
+..++.+---||.= .+.|+|++|.+..+.+..-.|.|+- -..|...|.+|
T Consensus 110 e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~K 161 (235)
T 3bu8_A 110 ESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREK 161 (235)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhcc
Confidence 34566666677764 7899999999999999999888874 45566666654
No 273
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=26.97 E-value=64 Score=18.12 Aligned_cols=10 Identities=20% Similarity=0.262 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q psy16295 98 LAGGAVLAQG 107 (128)
Q Consensus 98 i~gga~~~~g 107 (128)
|+-|.+++++
T Consensus 16 iVvG~v~gv~ 25 (38)
T 2k1k_A 16 VIFGLLLGAA 25 (38)
T ss_dssp HHHHHHHHHH
T ss_pred eehHHHHHHH
Confidence 3333433333
No 274
>2o8s_A AGR_C_984P; all alpha-helical protein, structural genomics, PSI-2, prote structure initiative; 2.40A {Agrobacterium tumefaciens} SCOP: a.295.1.1
Probab=26.51 E-value=79 Score=25.85 Aligned_cols=61 Identities=13% Similarity=0.160 Sum_probs=45.0
Q ss_pred hhhHHHHHHHHHHHhhc-cCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHH
Q psy16295 16 CADIRKGILLLEELFKT-ETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQ 76 (128)
Q Consensus 16 ~~d~~~GI~LL~~l~~~-~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~Q 76 (128)
..++.+-++-+++-+.. ..++-...-+.||-.|+..|-+.+...++.+++.+|+-+|+++-
T Consensus 78 ~p~v~Re~~Yf~enIg~V~SvDDLL~D~RLl~~AL~AfGLed~~~akaflkKVLesdlsD~~ 139 (323)
T 2o8s_A 78 QPDVARETEYYREKIGSVKSIDDFMADTRLYNYALKAHGLEDMAYAKAFIRKVLTEGASDKN 139 (323)
T ss_dssp SHHHHHHHHHHHHHGGGCCSHHHHHTCHHHHHHHHHHTTGGGSTTCHHHHHHHHHHCSSSTT
T ss_pred ChHHHHHHHHHHHhcCCCCCHHHHhccHHHHHHHHHhcCCchhhchHHHHHHHHhcCCCChH
Confidence 34556666666664444 22211235667899999999999999999999999999998864
No 275
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=26.29 E-value=61 Score=18.65 Aligned_cols=6 Identities=17% Similarity=0.673 Sum_probs=2.8
Q ss_pred HHHHHH
Q psy16295 96 MALAGG 101 (128)
Q Consensus 96 ~~i~gg 101 (128)
.|++||
T Consensus 14 ~gvi~~ 19 (43)
T 2k9j_B 14 LSVMGA 19 (43)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 344554
No 276
>3ub0_A Non-structural protein 6, NSP6,; feline coronavirus, primer-independen polymerase, replication; 2.60A {Feline infectious peritonitis virus}
Probab=25.87 E-value=68 Score=24.56 Aligned_cols=30 Identities=10% Similarity=0.069 Sum_probs=25.9
Q ss_pred chHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16295 56 EYTKSLKYCRAFLAIESENSQVQHLESIVK 85 (128)
Q Consensus 56 dY~~A~~~~~~lL~~eP~N~QA~~Lk~~Ie 85 (128)
+|++|+..++......-..++.+.|++.+.
T Consensus 18 ~YE~A~~~Ye~a~~ng~~pQ~~Kql~KA~N 47 (199)
T 3ub0_A 18 AYEKARADLEEAKKNDVSPQLLKQLTKACN 47 (199)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 699999999999999977788888888763
No 277
>2yin_A DOCK2, dedicator of cytokinesis protein 2; apoptosis, DOCK, DOCK guanine nucleotide exchange factors; 2.70A {Homo sapiens} PDB: 3b13_A
Probab=21.45 E-value=87 Score=25.98 Aligned_cols=40 Identities=23% Similarity=0.184 Sum_probs=30.8
Q ss_pred HHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHH
Q psy16295 23 ILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYC 64 (128)
Q Consensus 23 I~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~ 64 (128)
+.|++-+-..+.| +....+++-|+--|.+.++|.||=-+.
T Consensus 19 ~~l~~~y~~~~~~--el~i~~l~~L~~~h~~~~ny~EAa~~l 58 (436)
T 2yin_A 19 VNLLNFYKDNNRE--EMYIRYLYKLRDLHLDCDNYTEAAYTL 58 (436)
T ss_dssp HHHHHHHHHHTCH--HHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhCCCh--HHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 3444444443556 689999999999999999999987664
No 278
>1k19_A Chemosensory protein CSP2; pheromone, lipid transport; NMR {Mamestra brassicae} SCOP: a.118.21.1 PDB: 1kx8_A 1kx9_A 1n8u_A* 1n8v_A* 2jnt_A
Probab=21.38 E-value=77 Score=21.94 Aligned_cols=31 Identities=10% Similarity=0.209 Sum_probs=27.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q psy16295 60 SLKYCRAFLAIESENSQVQHLESIVKKRMET 90 (128)
Q Consensus 60 A~~~~~~lL~~eP~N~QA~~Lk~~Ie~~i~k 90 (128)
=.+|++.+|..-|-.+.++.||+.|-+.+..
T Consensus 23 l~~y~~Clld~gpCtpegk~lK~~lpeAl~t 53 (112)
T 1k19_A 23 LVAYVNCVMERGKCSPEGKELKEHLQDAIEN 53 (112)
T ss_dssp HHHHHHHHTTCSSSHHHHHHHHHHHHHHTTT
T ss_pred HHHHHhHHhcCCCCCHHHHHHHHHhHHHHhc
Confidence 3578999999999999999999999988753
No 279
>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A
Probab=20.69 E-value=79 Score=23.46 Aligned_cols=33 Identities=3% Similarity=-0.045 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q psy16295 58 TKSLKYCRAFLAIESENSQVQHLESIVKKRMET 90 (128)
Q Consensus 58 ~~A~~~~~~lL~~eP~N~QA~~Lk~~Ie~~i~k 90 (128)
.+....+..+|+.+|+.+.+.++.+.+++....
T Consensus 234 ~~l~~li~~~l~~dP~~Rs~~el~~~L~~~~~~ 266 (286)
T 3uqc_A 234 FQISAVAARSVQGDGGIRSASTLLNLMQQATAV 266 (286)
T ss_dssp HHHHHHHHHHHCTTSSCCCHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHcccCCccCCHHHHHHHHHHHhcc
Confidence 456788999999999999888888887765543
No 280
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B
Probab=20.39 E-value=1.7e+02 Score=23.95 Aligned_cols=48 Identities=8% Similarity=0.042 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q psy16295 40 KRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIVKKRMET 90 (128)
Q Consensus 40 ~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~Ie~~i~k 90 (128)
--+++...|--..-.|+.+.|.+|++.+ -.+++++..|+..|.....+
T Consensus 335 l~~~~~eYA~lLA~qG~l~~A~~yL~~l---p~~~~~~~~lr~Rl~~a~~~ 382 (399)
T 2pm7_A 335 LIAKFLEFINLTTSTGNFELATEFLNSL---PSDNEEVKTEKARVLIASGK 382 (399)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHS---CTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHhC---CCCChhHHHHHHHHHHhcCC
Confidence 3456666677778889999999999964 23668888888888766644
Done!