RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16295
(128 letters)
>gnl|CDD|213405 cd12212, Fis1, Mitochondria Fission Protein Fis1, cytosolic domain.
Fis1, along with Dnm1 and Mdv1, is an essential protein
in mediating mitochondrial fission. Dnm1 and Fis1 are
highly conserved, with a common mechanism in disparate
species. In mutants of these proteins, mitochondrial
fission is impaired, resulting in networks of undivided
mitochondria. The Fis1 N-terminus is cytosolic and
tethered to the mitochondrial outer membrane via a
C-terminal transmembrane domain. Fis1 appears to act via
the recruitment of division complexes to the
mitochondrial outer membrane, via interactions with Mdv1
or Caf4. Fis1 has tandem TPR helix-turn-helix motifs
which are known to mediate protein-protein interactions.
Length = 113
Score = 99.1 bits (248), Expect = 4e-28
Identities = 32/92 (34%), Positives = 58/92 (63%), Gaps = 3/92 (3%)
Query: 2 TQFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSL 61
T+FNY++ L++S D ++G+ LL E+++ E R+R+ LYYLA+GN ++ Y+++
Sbjct: 25 TKFNYAWGLIKSNSREDQQEGVRLLTEIYRESPE---RRRECLYYLALGNYKLGNYSEAR 81
Query: 62 KYCRAFLAIESENSQVQHLESIVKKRMETEGL 93
+Y L E +N Q Q L+ ++ ++ EGL
Sbjct: 82 RYNDLLLEKEPDNLQAQSLKQLIDDKVAKEGL 113
>gnl|CDD|132797 cd06887, PX_p47phox, The phosphoinositide binding Phox Homology
domain of the p47phox subunit of NADPH oxidase. The PX
domain is a phosphoinositide (PI) binding module present
in many proteins with diverse functions such as cell
signaling, vesicular trafficking, protein sorting, and
lipid modification, among others. p47phox is a cytosolic
subunit of the phagocytic NADPH oxidase complex (also
called Nox2 or gp91phox), which plays a key role in the
ability of phagocytes to defend against bacterial
infections. NADPH oxidase catalyzes the transfer of
electrons from NADPH to oxygen during phagocytosis
forming superoxide and reactive oxygen species. p47phox
is required for activation of NADH oxidase and plays a
role in translocation. It contains an N-terminal PX
domain, two Src Homology 3 (SH3) domains, and a
C-terminal domain that contains PxxP motifs for binding
SH3 domains. The PX domain of p47phox is unique in that
it contains two distinct basic pockets on the
membrane-binding surface: one preferentially binds
phosphatidylinositol-3,4-bisphosphate [PI(3,4)P2] and is
analogous to the PI3P-binding pocket of p40phox, while
the other binds anionic phospholipids such as
phosphatidic acid or phosphatidylserine. Simultaneous
binding in the two pockets results in increased membrane
affinity. The PX domain of p47phox is also involved in
protein-protein interaction.
Length = 118
Score = 28.6 bits (64), Expect = 0.43
Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Query: 26 LEELFKTETEDIDRKRDYLYYLA----IGNARIKEYTKSL--KYCRAFLAIESENSQVQH 79
L+E+F E DI+++ + +L R E + +YC L++ + S+ H
Sbjct: 49 LKEMFPIEAGDINKENRIIPHLPAPKWFDGQRAAENRQGTLTEYCSTLLSLPPKISRCPH 108
Query: 80 LESIVKKR 87
+ K R
Sbjct: 109 VLDFFKVR 116
>gnl|CDD|226085 COG3555, COG3555, Aspartyl/asparaginyl beta-hydroxylase and related
dioxygenases [Posttranslational modification, protein
turnover, chaperones].
Length = 291
Score = 28.6 bits (64), Expect = 0.95
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 5/54 (9%)
Query: 10 LVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKY 63
LVRS A +R+ + + T D+ +A+ + R++E L
Sbjct: 231 LVRSVVEAAMRR-----QPVSGDVTGASDKLFLVAGAIALQSKRVEERNSKLYK 279
>gnl|CDD|219053 pfam06482, Endostatin, Collagenase NC10 and Endostatin. NC10
stands for Non-helical region 10 and is taken from human
COL15A1. A mutation in this region in human COL18A1 is
associated with an increased risk of prostrate cancer.
This domain is cleaved from the precursor and forms
endostatin. Endostatin is a key tumour suppressor and
has been used highly successfully to treat cancer. It is
a potent angiogenesis inhibitor. Endostatin also binds a
zinc ion near the N-terminus; this is likely to be of
structural rather than functional importance according
to.
Length = 291
Score = 27.8 bits (62), Expect = 1.5
Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 5/22 (22%)
Query: 65 RAFLAIESENSQVQHLESIVKK 86
RAFL+ S++Q L SIV++
Sbjct: 154 RAFLS-----SRLQDLYSIVRR 170
>gnl|CDD|227943 COG5656, SXM1, Importin, protein involved in nuclear import
[Posttranslational modification, protein turnover,
chaperones].
Length = 970
Score = 27.9 bits (62), Expect = 1.6
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYL 44
F + L+RS + G+L LEELFK + ++ +
Sbjct: 128 FPKAANLLRSSEANHVYTGLLCLEELFKAYRWKYNDEQVDI 168
>gnl|CDD|234533 TIGR04285, nucleoid_noc, nucleoid occlusion protein. This model
describes nucleoid occlusion protein, a close homolog to
ParB chromosome partitioning proteins including Spo0J in
Bacillus subtilis. Its gene often is located near the
gene for the Spo0J ortholog. This protein bind a
specific DNA sequence and blocks cytokinesis from
happening until chromosome segregation is complete.
Length = 255
Score = 27.5 bits (62), Expect = 1.9
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 65 RAFLAIESENSQVQHLESIVKKRM---ETEGL 93
RA L + E Q++ L I++K + +TE L
Sbjct: 159 RALLKLPDEELQLEVLNEIIEKGLNVKQTEEL 190
>gnl|CDD|224001 COG1075, LipA, Predicted acetyltransferases and hydrolases with the
alpha/beta hydrolase fold [General function prediction
only].
Length = 336
Score = 27.5 bits (61), Expect = 2.1
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 45 YYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIVKKRMETEGLK 94
+ IG +IKE +KY + + ENS+ HL+ I + E + L
Sbjct: 276 GLVGIGLVKIKENDGLVKYLSSLGKVNRENSRWDHLDEIGQDLGEEDVLN 325
>gnl|CDD|178293 PLN02690, PLN02690, Agmatine deiminase.
Length = 374
Score = 27.0 bits (60), Expect = 3.3
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
Query: 85 KKRMETEGLK----GMALAGGAVLAQGQGT 110
+K +E E L M L GG++ G+GT
Sbjct: 143 RKILEAERLPRFPHSMILEGGSIHVDGEGT 172
>gnl|CDD|227251 COG4914, COG4914, Predicted nucleotidyltransferase [General
function prediction only].
Length = 190
Score = 26.3 bits (58), Expect = 3.9
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 13/61 (21%)
Query: 35 EDIDRKRDYLYYLAIGNARI-KEYTKSLKYCRAFLAIESENSQVQHLESIVKKRMETEGL 93
ED + ++ + GN R+ E K +Y AF E+++ + KR+ G+
Sbjct: 141 EDEEFLKEVARMVLEGNIRVDYEKIK--EYATAF----PEDAEG------ILKRLRRNGI 188
Query: 94 K 94
Sbjct: 189 Y 189
>gnl|CDD|224534 COG1619, LdcA, Uncharacterized proteins, homologs of microcin C7
resistance protein MccF [Defense mechanisms].
Length = 313
Score = 26.5 bits (59), Expect = 4.2
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 9 CLVRSEFCADIRKGILLLEELFKTETEDIDR 39
L+ + + DI IL LE++ + IDR
Sbjct: 195 SLIGTPYMPDIEGKILFLEDVNEK-PYRIDR 224
>gnl|CDD|213718 TIGR02529, EutJ, ethanolamine utilization protein EutJ family
protein.
Length = 239
Score = 26.3 bits (58), Expect = 5.1
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 77 VQHLESIVKKRMETEGLKGMALAGGA 102
Q + SIVK+ +E +G+K + L GGA
Sbjct: 179 YQKMASIVKRHIEGQGVKDLYLVGGA 204
>gnl|CDD|214755 smart00638, LPD_N, Lipoprotein N-terminal Domain.
Length = 574
Score = 26.1 bits (58), Expect = 6.7
Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
Query: 26 LEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESI 83
L EL + D + LY A+GNA S+K +L S L +I
Sbjct: 447 LHELLQQAVSKGDEEEIQLYLKALGNAGHPS---SIKVLEPYLEGAEPLSTFIRLAAI 501
>gnl|CDD|220397 pfam09781, NDUF_B5, NADH:ubiquinone oxidoreductase, NDUFB5/SGDH
subunit. Members of this family mediate the transfer of
electrons from NADH to the respiratory chain. The
immediate electron acceptor for the enzyme is believed
to be ubiquinone, the reaction that occurs being: NADH +
ubiquinone = NAD(+) + ubiquinol.
Length = 182
Score = 25.5 bits (56), Expect = 7.3
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Query: 55 KEYTKSLKYCRAFLAIESENSQVQHLESIVKKRMETEG 92
KEY K L A + E+E ++++ LE V++ M G
Sbjct: 124 KEYEKML----ALIQEENEKAEIRLLELEVRRLMRERG 157
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.134 0.373
Gapped
Lambda K H
0.267 0.0715 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,258,556
Number of extensions: 539524
Number of successful extensions: 452
Number of sequences better than 10.0: 1
Number of HSP's gapped: 450
Number of HSP's successfully gapped: 22
Length of query: 128
Length of database: 10,937,602
Length adjustment: 86
Effective length of query: 42
Effective length of database: 7,123,158
Effective search space: 299172636
Effective search space used: 299172636
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.2 bits)