RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16295
(128 letters)
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces
cerevisiae} SCOP: a.118.8.1
Length = 144
Score = 126 bits (317), Expect = 1e-38
Identities = 35/104 (33%), Positives = 61/104 (58%), Gaps = 3/104 (2%)
Query: 2 TQFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSL 61
++FNY++ L++S D R G+ +L +++K R+R+ LYYL IG ++ EY+ +
Sbjct: 41 SRFNYAWGLIKSTDVNDERLGVKILTDIYKEAES---RRRECLYYLTIGCYKLGEYSMAK 97
Query: 62 KYCRAFLAIESENSQVQHLESIVKKRMETEGLKGMALAGGAVLA 105
+Y E N QV L+S+V+ +++ E LKG+ +AGG
Sbjct: 98 RYVDTLFEHERNNKQVGALKSMVEDKIQKETLKGVVVAGGVHHH 141
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens}
SCOP: a.118.8.1
Length = 152
Score = 124 bits (313), Expect = 6e-38
Identities = 53/106 (50%), Positives = 75/106 (70%), Gaps = 2/106 (1%)
Query: 2 TQFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSL 61
TQF Y++CLVRS++ DIRKGI+LLEEL +++ +RDY++YLA+GN R+KEY K+L
Sbjct: 34 TQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKE--EQRDYVFYLAVGNYRLKEYEKAL 91
Query: 62 KYCRAFLAIESENSQVQHLESIVKKRMETEGLKGMALAGGAVLAQG 107
KY R L E +N+Q + LE ++ K M+ +GL GMA+ GG L
Sbjct: 92 KYVRGLLQTEPQNNQAKELERLIDKAMKKDGLVGMAIVGGMALGVA 137
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function;
2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Length = 126
Score = 106 bits (266), Expect = 4e-31
Identities = 46/92 (50%), Positives = 67/92 (72%), Gaps = 2/92 (2%)
Query: 2 TQFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSL 61
TQF Y++CLVR+ + DIRKGI+LLEEL +++ +RDY++YLA+GN R+KEY K+L
Sbjct: 37 TQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKE--EQRDYVFYLAVGNYRLKEYEKAL 94
Query: 62 KYCRAFLAIESENSQVQHLESIVKKRMETEGL 93
KY R L E +N+Q + LE ++ K M+ +GL
Sbjct: 95 KYVRGLLQTEPQNNQAKELERLIDKAMKKDGL 126
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR,
scaffold, peroxisome, membrane fission, protein binding;
1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A
3uux_A
Length = 134
Score = 103 bits (259), Expect = 5e-30
Identities = 29/90 (32%), Positives = 53/90 (58%), Gaps = 3/90 (3%)
Query: 2 TQFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSL 61
++FNY++ L++S D R G+ +L +++K R+R+ LYYL IG ++ EY+ +
Sbjct: 42 SRFNYAWGLIKSTDVNDERLGVKILTDIYKEAES---RRRECLYYLTIGCYKLGEYSMAK 98
Query: 62 KYCRAFLAIESENSQVQHLESIVKKRMETE 91
+Y E N QV L+S+V+ +++ E
Sbjct: 99 RYVDTLFEHERNNKQVGALKSMVEDKIQKE 128
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.4 bits (78), Expect = 0.006
Identities = 19/127 (14%), Positives = 40/127 (31%), Gaps = 35/127 (27%)
Query: 3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLK 62
+ NY F L+ + +TE Y+ R + Y +
Sbjct: 88 RINYKF----------------LMSPI---KTEQRQPSMMTRMYI---EQRDRLYNDNQV 125
Query: 63 YCRAFLAIESENSQVQ-HLESIVKKRMETEGLKGMALAGGAVLAQGQGTMEMSCKSYKNT 121
+ + ++ +++ L + + + + G+ +G +A C SYK
Sbjct: 126 FAKYNVSRLQPYLKLRQALLEL--RPAKNVLIDGVLGSGKTWVAL------DVCLSYK-- 175
Query: 122 ASVLKKF 128
V K
Sbjct: 176 --VQCKM 180
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.9 bits (77), Expect = 0.011
Identities = 19/111 (17%), Positives = 37/111 (33%), Gaps = 37/111 (33%)
Query: 10 LVRSEFCADIRKG--I-LLLEELFKTETEDIDRKRDYL--YYLA--IGNARIKEYTKSLK 62
L +EF +G I L +L + + + ++ + Y A + + + S
Sbjct: 86 LCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNS-- 143
Query: 63 YCRAFL-AIESENSQVQHLESIVKKRMETEGLKGMALAGGAVLAQGQGTME 112
A A+ N+Q+ +A+ GG QG +
Sbjct: 144 ---ALFRAVGEGNAQL------------------VAIFGG------QGNTD 167
Score = 32.7 bits (74), Expect = 0.022
Identities = 28/131 (21%), Positives = 43/131 (32%), Gaps = 37/131 (28%)
Query: 5 NYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYC 64
NYS + I G L E++FK E Y + G ++T+
Sbjct: 1687 NYS-----AMIFETIVDGKLKTEKIFKEINEHS---TSYTFRSEKGLLSATQFTQ----- 1733
Query: 65 RAFLAIESENSQVQHLESIVKKRMETEGL--KGMALAG---G---AVLAQGQGTMEMSCK 116
A +E + + L+S +GL AG G A LA M
Sbjct: 1734 PALTLMEK--AAFEDLKS--------KGLIPADATFAGHSLGEYAA-LASLADVM----- 1777
Query: 117 SYKNTASVLKK 127
S ++ V+
Sbjct: 1778 SIESLVEVVFY 1788
Score = 27.3 bits (60), Expect = 1.5
Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 12/72 (16%)
Query: 66 AFLAIESENSQVQHLESIVK---KRMETEGLKGM---ALAGGAVLAQGQGTMEMS----C 115
+++ E S+V + ++ E L+G ALA A L Q T +
Sbjct: 66 GYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALA--AKLLQENDTTLVKTKELI 123
Query: 116 KSYKNTASVLKK 127
K+Y + K+
Sbjct: 124 KNYITARIMAKR 135
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.097
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 9/30 (30%)
Query: 54 IKEYTKSLK-Y----CRAFLAIESENSQVQ 78
+K+ SLK Y A LAI + ++
Sbjct: 22 LKKLQASLKLYADDSAPA-LAI---KATME 47
Score = 29.9 bits (66), Expect = 0.14
Identities = 7/40 (17%), Positives = 16/40 (40%), Gaps = 10/40 (25%)
Query: 73 ENSQVQHLESIVKKRMETEGLKGMALAGGAVLAQGQGTME 112
E ++ L++ +K + +A+ + TME
Sbjct: 18 EKQALKKLQASLKL-YADDSAPALAI---------KATME 47
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for
structural genomi infectious diseases, csgid, serine
peptidase S66; 1.95A {Bacillus anthracis}
Length = 331
Score = 26.4 bits (59), Expect = 3.0
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 3/30 (10%)
Query: 13 SEFCADIRKGILLLEELFKTETED---IDR 39
+ + +++ IL LEE T T DR
Sbjct: 217 TSYMPNLKDKILFLEEDSLTGTSTLKTFDR 246
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha
helix, antivirus, antiviral protein; 2.80A {Homo
sapiens}
Length = 472
Score = 26.4 bits (58), Expect = 3.0
Identities = 17/106 (16%), Positives = 41/106 (38%), Gaps = 4/106 (3%)
Query: 18 DIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQV 77
+ ++ F E + ++ +L Y ++K K++ + + I ++ +
Sbjct: 349 QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREK 408
Query: 78 QH----LESIVKKRMETEGLKGMALAGGAVLAQGQGTMEMSCKSYK 119
+ L+ I K R+ G AL A L + M+ + + +
Sbjct: 409 EKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSE 454
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 26.2 bits (57), Expect = 4.0
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 20 RKGILLLEELFKTETEDIDRKRD-----YLYYLAIGNARIKEYTKSLKYCRAFLAIESEN 74
K + LE + ++ +L LA+ +++EYTK+++ C L ++S N
Sbjct: 292 GKIVSWLEMEYGLSEKESKASESFLLAAFLN-LAMCYLKLREYTKAVECCDKALGLDSAN 350
>2ilk_A Interleukin-10; cytokine; 1.60A {Homo sapiens} SCOP: a.26.1.3 PDB:
1j7v_L 1y6k_L 2h24_A 1inr_A 1ilk_A 1lk3_A 1y6n_L 1vlk_A
1y6m_L
Length = 160
Score = 25.0 bits (54), Expect = 7.1
Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 3/72 (4%)
Query: 26 LEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIVK 85
LEE+ + ++ L ++ L+ C FL E+++ V+ +++
Sbjct: 73 LEEVMPQAENQDPDIKAHVNSLGENLKTLR---LRLRRCHRFLPCENKSKAVEQVKNAFN 129
Query: 86 KRMETEGLKGMA 97
K E K M+
Sbjct: 130 KLQEKGIYKAMS 141
>3sft_A CHEB, chemotaxis response regulator protein-glutamate
methylesterase; modified doubly-wound/fold,
chemoreceptor; 2.15A {Thermotoga maritima}
Length = 193
Score = 24.7 bits (55), Expect = 8.9
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 90 TEGLKGMALAGGAVLAQGQGT 110
T+G + GG V+A+ + T
Sbjct: 140 TKGAFKVKFYGGTVIAEDKET 160
>1chd_A CHEB methylesterase; chemotaxis protein, serine hydrolase, carboxyl
methylesteras; 1.75A {Salmonella typhimurium} SCOP:
c.40.1.1
Length = 203
Score = 24.7 bits (55), Expect = 9.8
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 90 TEGLKGMALAGGAVLAQ 106
G+ M AG +AQ
Sbjct: 142 AAGMLAMYQAGAWTIAQ 158
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.134 0.373
Gapped
Lambda K H
0.267 0.0585 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,828,231
Number of extensions: 95650
Number of successful extensions: 202
Number of sequences better than 10.0: 1
Number of HSP's gapped: 198
Number of HSP's successfully gapped: 28
Length of query: 128
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 45
Effective length of database: 4,384,350
Effective search space: 197295750
Effective search space used: 197295750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.7 bits)