RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16295
         (128 letters)



>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 124

 Score =  101 bits (254), Expect = 1e-29
 Identities = 30/90 (33%), Positives = 54/90 (60%), Gaps = 3/90 (3%)

Query: 2   TQFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSL 61
           ++FNY++ L++S    D R G+ +L +++K   E   R+R+ LYYL IG  ++ EY+ + 
Sbjct: 37  SRFNYAWGLIKSTDVNDERLGVKILTDIYK---EAESRRRECLYYLTIGCYKLGEYSMAK 93

Query: 62  KYCRAFLAIESENSQVQHLESIVKKRMETE 91
           +Y       E  N QV  L+S+V+ +++ E
Sbjct: 94  RYVDTLFEHERNNKQVGALKSMVEDKIQKE 123


>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 122

 Score = 51.6 bits (123), Expect = 3e-10
 Identities = 44/90 (48%), Positives = 65/90 (72%), Gaps = 2/90 (2%)

Query: 2   TQFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSL 61
           TQF Y++CLVR+ +  DIRKGI+LLEEL    +++   +RDY++YLA+GN R+KEY K+L
Sbjct: 35  TQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKE--EQRDYVFYLAVGNYRLKEYEKAL 92

Query: 62  KYCRAFLAIESENSQVQHLESIVKKRMETE 91
           KY R  L  E +N+Q + LE ++ K M+ +
Sbjct: 93  KYVRGLLQTEPQNNQAKELERLIDKAMKKD 122


>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis)
           [TaxId: 7054]}
          Length = 541

 Score = 24.9 bits (53), Expect = 3.5
 Identities = 6/23 (26%), Positives = 15/23 (65%)

Query: 19  IRKGILLLEELFKTETEDIDRKR 41
           +R G++ ++E+ K  T  +D ++
Sbjct: 509 LRGGVVFVDEVPKGLTGKLDARK 531


>d2ocda1 c.88.1.1 (A:2-337) Asparaginase type II {Vibrio cholerae
           [TaxId: 666]}
          Length = 336

 Score = 24.0 bits (51), Expect = 7.1
 Identities = 7/47 (14%), Positives = 13/47 (27%), Gaps = 5/47 (10%)

Query: 70  IESENSQVQHLESIVKKRMETEGLKGMALAGGAVLAQGQGTMEMSCK 116
           ++S +      + I                 G V+  G  TM  +  
Sbjct: 57  MDSSDMTPADWQLIADDIAAN-----YDKYDGFVILHGTDTMAYTAS 98


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.134    0.373 

Gapped
Lambda     K      H
   0.267   0.0663    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 436,577
Number of extensions: 17628
Number of successful extensions: 56
Number of sequences better than 10.0: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 9
Length of query: 128
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 53
Effective length of database: 1,377,846
Effective search space: 73025838
Effective search space used: 73025838
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.4 bits)