Query psy16296
Match_columns 70
No_of_seqs 128 out of 1219
Neff 9.4
Searched_HMMs 46136
Date Fri Aug 16 17:43:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16296.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16296hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0753|consensus 99.4 5.9E-13 1.3E-17 80.7 3.9 65 4-70 225-294 (317)
2 KOG0753|consensus 99.2 1.1E-11 2.3E-16 75.3 4.5 49 21-69 135-196 (317)
3 KOG0752|consensus 99.2 1.5E-11 3.3E-16 75.7 4.2 59 10-70 128-193 (320)
4 KOG0759|consensus 99.2 2.9E-11 6.3E-16 72.9 3.5 65 4-70 197-263 (286)
5 PF00153 Mito_carr: Mitochondr 99.1 1.1E-10 2.4E-15 60.2 3.1 33 37-69 40-72 (95)
6 KOG0758|consensus 99.1 1.5E-10 3.3E-15 70.3 3.7 63 4-68 9-77 (297)
7 KOG0754|consensus 99.1 3.6E-11 7.8E-16 71.8 0.6 56 11-68 10-77 (294)
8 KOG0752|consensus 99.0 5.2E-10 1.1E-14 69.0 4.4 58 11-70 226-295 (320)
9 KOG0764|consensus 99.0 5.6E-10 1.2E-14 67.6 4.0 33 37-69 142-174 (299)
10 PTZ00169 ADP/ATP transporter o 99.0 9.9E-10 2.2E-14 66.9 4.6 32 38-69 250-281 (300)
11 KOG0750|consensus 98.9 7.6E-10 1.6E-14 66.6 3.0 60 7-68 210-277 (304)
12 KOG0764|consensus 98.9 1.8E-09 3.8E-14 65.5 3.8 34 37-70 240-273 (299)
13 KOG0762|consensus 98.9 1.3E-09 2.8E-14 65.2 3.0 62 6-69 106-172 (311)
14 PTZ00169 ADP/ATP transporter o 98.9 2.6E-09 5.7E-14 65.1 4.4 58 10-69 9-81 (300)
15 KOG0754|consensus 98.9 9.9E-10 2.1E-14 65.7 2.3 50 21-70 213-272 (294)
16 KOG0768|consensus 98.9 1.2E-09 2.7E-14 67.1 2.8 60 8-69 231-293 (323)
17 KOG0758|consensus 98.9 1.7E-09 3.7E-14 65.8 3.3 60 9-70 214-276 (297)
18 KOG0757|consensus 98.9 2E-09 4.3E-14 65.3 3.2 32 38-69 164-195 (319)
19 KOG0756|consensus 98.9 7.2E-10 1.6E-14 67.5 1.4 57 12-70 213-276 (299)
20 KOG0767|consensus 98.9 4E-09 8.8E-14 64.0 4.1 63 7-69 136-199 (333)
21 KOG0751|consensus 98.8 1.5E-09 3.4E-14 70.2 2.4 62 7-70 541-607 (694)
22 KOG0749|consensus 98.8 4E-09 8.8E-14 63.6 3.8 61 7-69 212-280 (298)
23 PTZ00168 mitochondrial carrier 98.8 3.3E-09 7.2E-14 63.7 3.1 56 12-70 183-240 (259)
24 KOG0751|consensus 98.8 1.8E-09 3.9E-14 69.9 1.7 33 37-69 386-418 (694)
25 KOG0762|consensus 98.8 3.7E-09 8.1E-14 63.3 2.7 49 22-70 213-266 (311)
26 KOG0757|consensus 98.7 9.9E-09 2.2E-13 62.3 2.6 51 20-70 243-298 (319)
27 KOG0759|consensus 98.7 6.9E-09 1.5E-13 62.8 1.3 34 36-69 134-167 (286)
28 PTZ00168 mitochondrial carrier 98.7 1.7E-08 3.8E-13 60.6 2.5 49 21-69 95-147 (259)
29 KOG0755|consensus 98.6 8.3E-09 1.8E-13 61.9 0.7 59 10-70 230-295 (320)
30 KOG0760|consensus 98.6 5.5E-08 1.2E-12 58.9 3.1 47 21-67 122-173 (302)
31 KOG0768|consensus 98.5 1E-07 2.2E-12 58.8 3.2 49 21-69 147-198 (323)
32 KOG0766|consensus 98.5 1.5E-08 3.3E-13 60.2 -0.4 57 11-69 216-277 (297)
33 KOG0749|consensus 98.5 4.9E-08 1.1E-12 59.0 1.6 64 5-70 9-83 (298)
34 KOG0769|consensus 98.4 2.3E-07 5E-12 56.4 3.1 55 12-68 7-71 (308)
35 KOG0761|consensus 98.4 8.7E-08 1.9E-12 59.3 0.8 62 7-70 261-333 (361)
36 KOG0760|consensus 98.4 2.1E-07 4.6E-12 56.4 2.3 61 6-68 204-274 (302)
37 KOG0765|consensus 98.3 6.6E-07 1.4E-11 54.8 2.7 30 39-68 180-209 (333)
38 KOG0767|consensus 98.3 1.9E-07 4.2E-12 56.8 0.4 47 23-69 51-102 (333)
39 KOG0765|consensus 98.3 3.9E-07 8.4E-12 55.8 1.5 34 36-69 66-99 (333)
40 KOG0766|consensus 98.3 8E-07 1.7E-11 53.0 2.8 32 38-69 141-172 (297)
41 KOG0763|consensus 98.3 3.7E-07 8E-12 54.4 1.3 56 11-68 18-78 (301)
42 KOG0750|consensus 98.1 3.3E-07 7.2E-12 55.4 -1.0 64 4-69 112-180 (304)
43 KOG0036|consensus 98.1 1.2E-06 2.6E-11 55.9 1.3 57 11-69 190-253 (463)
44 KOG0763|consensus 98.1 1.3E-06 2.9E-11 52.1 1.0 50 21-70 227-279 (301)
45 KOG0755|consensus 98.0 2.6E-06 5.7E-11 51.4 1.9 36 35-70 165-200 (320)
46 KOG2745|consensus 98.0 5.7E-06 1.2E-10 50.5 2.6 35 34-68 169-203 (321)
47 KOG2954|consensus 97.9 8.3E-06 1.8E-10 51.1 2.6 32 38-69 327-358 (427)
48 KOG0756|consensus 97.9 6E-06 1.3E-10 50.7 1.8 31 39-69 148-178 (299)
49 KOG0769|consensus 97.9 1.5E-05 3.3E-10 48.6 3.2 29 41-69 251-279 (308)
50 KOG0770|consensus 97.8 2.8E-06 6.1E-11 51.8 -0.5 54 13-68 37-98 (353)
51 KOG0761|consensus 97.8 1.8E-05 3.8E-10 49.4 2.2 31 38-68 95-125 (361)
52 KOG0036|consensus 97.7 1.7E-05 3.8E-10 50.7 1.4 57 11-69 285-347 (463)
53 KOG0770|consensus 97.6 6.3E-05 1.4E-09 46.1 2.7 33 37-69 169-201 (353)
54 KOG1519|consensus 94.5 0.029 6.3E-07 33.5 1.9 28 41-69 63-90 (297)
55 KOG2745|consensus 93.5 0.096 2.1E-06 32.6 2.8 28 41-68 68-95 (321)
56 KOG1519|consensus 86.3 0.67 1.4E-05 27.8 2.0 35 34-69 148-182 (297)
57 KOG2954|consensus 78.1 0.87 1.9E-05 29.3 0.4 27 42-68 109-135 (427)
58 PF03201 HMD: H2-forming N5,N1 65.3 19 0.00041 19.1 4.3 54 13-68 19-72 (98)
59 PF10126 Nit_Regul_Hom: Unchar 61.4 5.9 0.00013 21.4 1.3 20 47-66 19-42 (110)
60 COG4075 Uncharacterized conser 59.9 6.7 0.00015 20.9 1.3 21 46-66 18-42 (110)
61 PF12594 DUF3764: Protein of u 51.8 8.5 0.00018 19.9 0.9 18 48-65 27-44 (86)
62 COG4297 Uncharacterized protei 44.1 16 0.00034 20.8 1.3 20 45-64 35-54 (163)
63 PF13384 HTH_23: Homeodomain-l 30.9 22 0.00047 15.6 0.4 18 42-59 32-49 (50)
64 PHA01749 coat protein 27.0 54 0.0012 17.6 1.5 32 38-69 50-85 (134)
65 PRK00961 H(2)-dependent methyl 26.4 1.3E+02 0.0028 19.4 3.3 43 23-67 271-313 (342)
66 PF08887 GAD-like: GAD-like do 26.1 60 0.0013 17.4 1.6 26 39-64 27-53 (109)
67 TIGR01723 hmd_TIGR 5,10-methen 25.6 1.4E+02 0.003 19.3 3.3 43 23-67 269-311 (340)
68 PF13518 HTH_28: Helix-turn-he 25.5 72 0.0016 13.7 1.7 19 42-60 27-45 (52)
69 smart00263 LYZ1 Alpha-lactalbu 24.8 63 0.0014 17.9 1.6 17 42-58 90-106 (127)
70 PF09196 DUF1953: Domain of un 21.9 27 0.00059 16.7 -0.2 11 53-63 8-18 (66)
71 PF05464 Phi-29_GP4: Phi-29-li 21.9 52 0.0011 17.8 0.9 22 46-67 69-90 (125)
72 TIGR01724 hmd_rel H2-forming N 20.9 1.8E+02 0.0039 19.0 3.2 43 23-67 222-264 (341)
73 PF01809 Haemolytic: Haemolyti 20.6 72 0.0016 15.6 1.2 23 42-67 29-51 (68)
74 PF08300 HCV_NS5a_1a: Hepatiti 20.3 33 0.00072 16.6 -0.0 12 53-64 7-18 (62)
No 1
>KOG0753|consensus
Probab=99.37 E-value=5.9e-13 Score=80.69 Aligned_cols=65 Identities=37% Similarity=0.802 Sum_probs=49.5
Q ss_pred hhHHHHHHHhhhHHHHHHHhHhhcccchhcc-----ccccccCcHHHHHHHHHHHhchhccccccchhhhcC
Q psy16296 4 LGRELYARFSYGYELLIFLVALPMNQKHLKN-----QHVRVYKGSIDCMLQTIKHEGFMALYKGFIPTWFIL 70 (70)
Q Consensus 4 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~i~~~eG~~gl~rG~~~~~~r~ 70 (70)
+..|+.+++.+|+.+ .++++|.+..+... ++...|+++.||+.+++++||+.+||||+.|+++|.
T Consensus 225 ~~~HfvSs~~AGl~a--ai~s~P~DVVKTRmMNqp~g~~~~Ykgs~DC~~k~v~~EG~~AlYKGF~Psw~Rl 294 (317)
T KOG0753|consen 225 IPTHFVSSFCAGLAA--AILSSPVDVVKTRMMNQPPGRGGLYKGSLDCLIKTVKNEGFFALYKGFIPSWLRL 294 (317)
T ss_pred hHHHHHHHHHHHHHH--HHhcCcHHHHHhhhccCCCCcCccccchHHHHHHHHHhcChHHHHccccccceec
Confidence 456788888888877 55444443333211 334679999999999999999999999999999984
No 2
>KOG0753|consensus
Probab=99.25 E-value=1.1e-11 Score=75.35 Aligned_cols=49 Identities=18% Similarity=0.291 Sum_probs=40.0
Q ss_pred HHhHhhcccchhccc-------------cccccCcHHHHHHHHHHHhchhccccccchhhhc
Q psy16296 21 FLVALPMNQKHLKNQ-------------HVRVYKGSIDCMLQTIKHEGFMALYKGFIPTWFI 69 (70)
Q Consensus 21 ~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~i~~~eG~~gl~rG~~~~~~r 69 (70)
++++..+.+|.|.+| .+++|++..+++.+|+++||++|||||..|++.|
T Consensus 135 Gaia~~~AnPtDlVKVrmQaeG~~~~~g~~~Ry~g~~~Af~~I~r~eGvrGLWkG~~Pn~qR 196 (317)
T KOG0753|consen 135 GAIAQALANPTDLVKVRMQAEGRLRLQGEPPRYSGTLNAFRTIYRTEGVRGLWKGVVPNIQR 196 (317)
T ss_pred hHHHHHhcCccceEEEEeeehhhhcccCCCCccccHHHHHHHHHHhcCcceeeeccchhHHH
Confidence 555555566666433 3567999999999999999999999999999987
No 3
>KOG0752|consensus
Probab=99.22 E-value=1.5e-11 Score=75.71 Aligned_cols=59 Identities=20% Similarity=0.297 Sum_probs=47.9
Q ss_pred HHHhhhHHHHHHHhHhhcccchhcccc-------ccccCcHHHHHHHHHHHhchhccccccchhhhcC
Q psy16296 10 ARFSYGYELLIFLVALPMNQKHLKNQH-------VRVYKGSIDCMLQTIKHEGFMALYKGFIPTWFIL 70 (70)
Q Consensus 10 ~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~i~~~eG~~gl~rG~~~~~~r~ 70 (70)
..+.+|+.+ ++.++...+|.|..++ ...|.++.+++++|+++||++|||||+.|+++++
T Consensus 128 ~~l~aGalA--G~~a~~~tyPLDlvRtRLa~q~~~~~y~~l~~a~~~I~~~eGi~gfYrGl~ptllgi 193 (320)
T KOG0752|consen 128 VRLVAGALA--GMTATLATYPLDLLRTRLAVQGELKVYRGLLHAFKTIYREEGIRGFYRGLGPTLLGI 193 (320)
T ss_pred HHHHHHHHH--HHHHHHhcCcHHHhhhheeeecccccCCcHHHHHHHHHHhcchhhhhcCcchhhhee
Confidence 445566655 7777888888887653 2259999999999999999999999999999874
No 4
>KOG0759|consensus
Probab=99.16 E-value=2.9e-11 Score=72.90 Aligned_cols=65 Identities=25% Similarity=0.485 Sum_probs=47.7
Q ss_pred hhHHHHHHHhhhHHHHHHHhHhhcccchhccc--cccccCcHHHHHHHHHHHhchhccccccchhhhcC
Q psy16296 4 LGRELYARFSYGYELLIFLVALPMNQKHLKNQ--HVRVYKGSIDCMLQTIKHEGFMALYKGFIPTWFIL 70 (70)
Q Consensus 4 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~eG~~gl~rG~~~~~~r~ 70 (70)
++.|+.+++.+|+.. .+++.|++..+.... ....|++..||+.++.|+||+.+||||+.|.++|.
T Consensus 197 ~~tH~~aS~~aG~va--tv~s~PlDv~KTr~mN~~~~~y~g~~d~~~k~~k~eG~~~~~kGf~P~~~Rl 263 (286)
T KOG0759|consen 197 ILTHFIASMIAGLVA--TVISQPLDVLKTRIMNMKPGEYKGLLDVLVKTVKKEGPLGFFKGFVPALMRL 263 (286)
T ss_pred hHHHHHHHHHHHHHH--HHhcChHHHHHHHHhhcCccccccHHHHHHHHHHHcCcchhhccchHHHHHh
Confidence 567777887777665 554444433332221 12349999999999999999999999999999884
No 5
>PF00153 Mito_carr: Mitochondrial carrier protein; InterPro: IPR018108 A variety of substrate carrier proteins that are involved in energy transfer are found in the inner mitochondrial membrane or integral to the membrane of other eukaryotic organelles such as the peroxisome [, , , , , ]. Such proteins include: ADP, ATP carrier protein (ADP/ATP translocase); 2-oxoglutarate/malate carrier protein; phosphate carrier protein; tricarboxylate transport protein (or citrate transport protein); Graves disease carrier protein; yeast mitochondrial proteins MRS3 and MRS4; yeast mitochondrial FAD carrier protein; and many others. Structurally, these proteins can consist of up to three tandem repeats of a domain of approximately 100 residues, each domain containing two transmembrane regions.; PDB: 2LCK_A 2C3E_A 1OKC_A.
Probab=99.08 E-value=1.1e-10 Score=60.18 Aligned_cols=33 Identities=33% Similarity=0.702 Sum_probs=29.5
Q ss_pred ccccCcHHHHHHHHHHHhchhccccccchhhhc
Q psy16296 37 VRVYKGSIDCMLQTIKHEGFMALYKGFIPTWFI 69 (70)
Q Consensus 37 ~~~~~~~~~~~~~i~~~eG~~gl~rG~~~~~~r 69 (70)
...+.+.++++++++++||+++||||+.++++|
T Consensus 40 ~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~ 72 (95)
T PF00153_consen 40 KQPYQGVWQCLRKIYKEEGIRGLYRGFGPSLLR 72 (95)
T ss_dssp CSS-SSHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred ccccccccccccccchhhhhccccCChHHHHHH
Confidence 456889999999999999999999999999886
No 6
>KOG0758|consensus
Probab=99.07 E-value=1.5e-10 Score=70.33 Aligned_cols=63 Identities=25% Similarity=0.374 Sum_probs=49.7
Q ss_pred hhHHHHHHHhhhHHHHHHHhHhhcccchhcccc------ccccCcHHHHHHHHHHHhchhccccccchhhh
Q psy16296 4 LGRELYARFSYGYELLIFLVALPMNQKHLKNQH------VRVYKGSIDCMLQTIKHEGFMALYKGFIPTWF 68 (70)
Q Consensus 4 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~i~~~eG~~gl~rG~~~~~~ 68 (70)
+....+..|.+|... ++....+.+|.|.+|. ...|++.+||+++++++||++|||||..+.++
T Consensus 9 ~~~~~~kdf~AG~~g--G~~~vlVGhPfDTvKVRlQt~~~~~y~~~~~c~~~t~~~Eg~~GfYkGm~~Pli 77 (297)
T KOG0758|consen 9 LEGSPLKDFVAGGVG--GAAQVLVGHPFDTVKVRLQTQNTPVYKGTLDCVKKTLKNEGVKGFYKGMTAPLI 77 (297)
T ss_pred cccccHHHHHHhhhh--hhhhhhccCCccceEEeeeccCCCCcccHHHHHHHHHHhcchhhhhcccccchh
Confidence 334446677777766 7777778888887662 34588999999999999999999999988765
No 7
>KOG0754|consensus
Probab=99.06 E-value=3.6e-11 Score=71.78 Aligned_cols=56 Identities=25% Similarity=0.449 Sum_probs=44.9
Q ss_pred HHhhhHHHHHHHhHhhcccchhcccc------------ccccCcHHHHHHHHHHHhchhccccccchhhh
Q psy16296 11 RFSYGYELLIFLVALPMNQKHLKNQH------------VRVYKGSIDCMLQTIKHEGFMALYKGFIPTWF 68 (70)
Q Consensus 11 ~~~~g~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~i~~~eG~~gl~rG~~~~~~ 68 (70)
.|.||+.+ +++.-.+++|.|..|+ +.+|++++||+.+|+|+||+.+||||+.|.++
T Consensus 10 Qf~AGg~A--G~~Ev~~myPLDVVKTRmQlq~~~~~~~~~~Y~g~~Dc~~Ki~k~EG~s~lykGI~pPIl 77 (294)
T KOG0754|consen 10 QFLAGGSA--GFSEVCLMYPLDVVKTRMQLQVTTPFGGEVHYNGVMDCLVKIVKNEGLSSLYKGILPPIL 77 (294)
T ss_pred eeeccccc--chhhheeecchhhheeeeeeecccCCCCccccccHHHHHHHHHHhcchhhhhccCCCHHh
Confidence 45566555 6676677788887653 35799999999999999999999999998765
No 8
>KOG0752|consensus
Probab=99.01 E-value=5.2e-10 Score=69.04 Aligned_cols=58 Identities=29% Similarity=0.352 Sum_probs=45.3
Q ss_pred HHhhhHHHHHHHhHhhcccchhcccc------------ccccCcHHHHHHHHHHHhchhccccccchhhhcC
Q psy16296 11 RFSYGYELLIFLVALPMNQKHLKNQH------------VRVYKGSIDCMLQTIKHEGFMALYKGFIPTWFIL 70 (70)
Q Consensus 11 ~~~~g~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~i~~~eG~~gl~rG~~~~~~r~ 70 (70)
.+..|+.+ ++++..+..|.|.++. ..+|++++||+++|+++||+.|||||+.|+++++
T Consensus 226 ~l~~GalA--G~~aqti~yPlD~vRrrmQ~~~~~~~~~~~~~~~~~~~~~~i~~~EG~~gLYkGl~p~~lK~ 295 (320)
T KOG0752|consen 226 RLLCGALA--GAVAQTITYPLDTVRRRMQLGGLKYFGGGFRYKGVLDAFRQIVKTEGVKGLYKGLSPNLLKV 295 (320)
T ss_pred HHHHHHHH--HHHHhhhcccHHHHHHHHhccCccccccccccccHHHHHHHHHHHhhhhhhhccccHHHHHh
Confidence 44555554 7777888888886531 2345789999999999999999999999998763
No 9
>KOG0764|consensus
Probab=98.99 E-value=5.6e-10 Score=67.58 Aligned_cols=33 Identities=39% Similarity=0.724 Sum_probs=30.2
Q ss_pred ccccCcHHHHHHHHHHHhchhccccccchhhhc
Q psy16296 37 VRVYKGSIDCMLQTIKHEGFMALYKGFIPTWFI 69 (70)
Q Consensus 37 ~~~~~~~~~~~~~i~~~eG~~gl~rG~~~~~~r 69 (70)
...|++++|++++|+++||++|||+|+.|.++-
T Consensus 142 ~~~Y~~~f~a~rki~k~EG~rgLY~GlVP~L~G 174 (299)
T KOG0764|consen 142 STAYKGMFDALRKIYKEEGFRGLYKGLVPGLLG 174 (299)
T ss_pred ccccccHHHHHHHHHHHHhHHHHHhhhhhHhhh
Confidence 457999999999999999999999999998763
No 10
>PTZ00169 ADP/ATP transporter on adenylate translocase; Provisional
Probab=98.97 E-value=9.9e-10 Score=66.92 Aligned_cols=32 Identities=28% Similarity=0.583 Sum_probs=30.1
Q ss_pred cccCcHHHHHHHHHHHhchhccccccchhhhc
Q psy16296 38 RVYKGSIDCMLQTIKHEGFMALYKGFIPTWFI 69 (70)
Q Consensus 38 ~~~~~~~~~~~~i~~~eG~~gl~rG~~~~~~r 69 (70)
..|++.++|+++|+++||++|||||+.|+++|
T Consensus 250 ~~y~~~~~~~~~i~~~eG~~gly~G~~~~~~~ 281 (300)
T PTZ00169 250 IQYTGTLDCWKKILKNEGLGGFFKGAWANVLR 281 (300)
T ss_pred cccCcHHHHHHHHHHHhchhHhhccchHHHHh
Confidence 46899999999999999999999999999987
No 11
>KOG0750|consensus
Probab=98.94 E-value=7.6e-10 Score=66.58 Aligned_cols=60 Identities=25% Similarity=0.293 Sum_probs=47.0
Q ss_pred HHHHHHhhhHHHHHHHhHhhcccchhcccc--------ccccCcHHHHHHHHHHHhchhccccccchhhh
Q psy16296 7 ELYARFSYGYELLIFLVALPMNQKHLKNQH--------VRVYKGSIDCMLQTIKHEGFMALYKGFIPTWF 68 (70)
Q Consensus 7 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~i~~~eG~~gl~rG~~~~~~ 68 (70)
.++.+|.+|+.. +..+..+..|.|.+|+ +.+|++.+||+++++++||+.+||||..++++
T Consensus 210 vF~~sF~agl~~--gs~sa~~vtPlDVvKTRiQ~~~~ned~~~gi~d~~~~~lk~EGptAffKG~~cr~l 277 (304)
T KOG0750|consen 210 VFYQSFLAGLVA--GSASAIVVTPLDVVKTRIQTLGDNEDNYKGIFDCVKNTLKNEGPTAFFKGATCRML 277 (304)
T ss_pred hhHHHHHHHHHh--hhhhhhhcccHHHHHHHHhhcccCccccccHHHHHHHHHHhhChHHHhccccccee
Confidence 366777777766 5555555666666553 45699999999999999999999999998875
No 12
>KOG0764|consensus
Probab=98.90 E-value=1.8e-09 Score=65.46 Aligned_cols=34 Identities=29% Similarity=0.538 Sum_probs=31.8
Q ss_pred ccccCcHHHHHHHHHHHhchhccccccchhhhcC
Q psy16296 37 VRVYKGSIDCMLQTIKHEGFMALYKGFIPTWFIL 70 (70)
Q Consensus 37 ~~~~~~~~~~~~~i~~~eG~~gl~rG~~~~~~r~ 70 (70)
...|+++++|+++++++||++|||||+.++++|+
T Consensus 240 ~~~~~~~~~lIk~t~r~eG~~GfYkG~~~nLvR~ 273 (299)
T KOG0764|consen 240 NPRYRGVFDLIKKTWRNEGFRGFYKGLATNLVRT 273 (299)
T ss_pred CcccccHHHHHHHHHHHhchhhHHHHhHHHHhhc
Confidence 5678999999999999999999999999999985
No 13
>KOG0762|consensus
Probab=98.90 E-value=1.3e-09 Score=65.23 Aligned_cols=62 Identities=23% Similarity=0.460 Sum_probs=46.6
Q ss_pred HHHHHHHhhhHHHHHHHhHhhcccchhc-----cccccccCcHHHHHHHHHHHhchhccccccchhhhc
Q psy16296 6 RELYARFSYGYELLIFLVALPMNQKHLK-----NQHVRVYKGSIDCMLQTIKHEGFMALYKGFIPTWFI 69 (70)
Q Consensus 6 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~i~~~eG~~gl~rG~~~~~~r 69 (70)
.+++.+..+|++- +++.+|++-.+.. .+...+|++.++|+++|++.||++|+|||+..+++|
T Consensus 106 s~fl~G~aaGa~Q--~vi~aPmEl~K~rLQlqd~~~~~t~~Gpi~~~kqilr~eGlrgl~rGltaTvlR 172 (311)
T KOG0762|consen 106 SHFLGGVAAGAAQ--SVICAPMELIKTRLQLQDQDSGITFSGPIDCLKQILRTEGLRGLYRGLTATVLR 172 (311)
T ss_pred HHHHHHHHHhhhh--hhhcchHHHHHHHHhhhcccCCccccCcHHHHHHHHhhhhhhHHhhhHHHHHHh
Confidence 3445555555544 6677776655532 234568999999999999999999999999999987
No 14
>PTZ00169 ADP/ATP transporter on adenylate translocase; Provisional
Probab=98.89 E-value=2.6e-09 Score=65.08 Aligned_cols=58 Identities=17% Similarity=0.283 Sum_probs=43.2
Q ss_pred HHHhhhHHHHHHHhHhhcccchhcccc---------------ccccCcHHHHHHHHHHHhchhccccccchhhhc
Q psy16296 10 ARFSYGYELLIFLVALPMNQKHLKNQH---------------VRVYKGSIDCMLQTIKHEGFMALYKGFIPTWFI 69 (70)
Q Consensus 10 ~~~~~g~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~i~~~eG~~gl~rG~~~~~~r 69 (70)
..+.+|+.+ ++++..+.+|.|.+|+ ..+|+++++++++++++||++|||||+.++++|
T Consensus 9 ~~~~aG~~a--g~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~~~~ 81 (300)
T PTZ00169 9 TDFLMGGIS--AAISKTAVAPIERVKMLIQTQDSIPEIKSGKVPRYSGIVNCFRRVSKEQGVLSLWRGNTANVIR 81 (300)
T ss_pred HHHHHHHHH--HHHHHHhcCcHhHheeeeeccccccccccccCcCcCcHHHHHHHHHhccceeEEecCChHHHHH
Confidence 345555544 5566666666665442 135889999999999999999999999999876
No 15
>KOG0754|consensus
Probab=98.89 E-value=9.9e-10 Score=65.75 Aligned_cols=50 Identities=30% Similarity=0.434 Sum_probs=41.6
Q ss_pred HHhHhhcccchhccc----------cccccCcHHHHHHHHHHHhchhccccccchhhhcC
Q psy16296 21 FLVALPMNQKHLKNQ----------HVRVYKGSIDCMLQTIKHEGFMALYKGFIPTWFIL 70 (70)
Q Consensus 21 ~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~i~~~eG~~gl~rG~~~~~~r~ 70 (70)
+.+.|.++.|.|..| ...+|+..+..+..++|+||+++||||+.|.++|.
T Consensus 213 gtla~~ln~pfDVaKsRIQgpqp~~~~~KY~wt~~ti~~vyrEEGF~ALYKGl~pkvmRL 272 (294)
T KOG0754|consen 213 GTLACVLNTPFDVAKSRIQGPQPVPGERKYNWTLPTILTVYREEGFRALYKGLVPKVMRL 272 (294)
T ss_pred hhhhhhccChhHHhHhhccCCCCCCCeeccceechHHHHHHHHhhHHHHHhhhhhhheee
Confidence 566677777777644 24579999999999999999999999999999984
No 16
>KOG0768|consensus
Probab=98.89 E-value=1.2e-09 Score=67.07 Aligned_cols=60 Identities=17% Similarity=0.254 Sum_probs=40.0
Q ss_pred HHHHHhhhHHHHHHHhHhhcccchhccccccccC---cHHHHHHHHHHHhchhccccccchhhhc
Q psy16296 8 LYARFSYGYELLIFLVALPMNQKHLKNQHVRVYK---GSIDCMLQTIKHEGFMALYKGFIPTWFI 69 (70)
Q Consensus 8 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~eG~~gl~rG~~~~~~r 69 (70)
...+..+|+.. +.+++|++..+.......++. .+.+++++|+++||+.+||+|+.|++++
T Consensus 231 a~~Ga~AG~it--A~lTTPlDViKTRiM~~~~~~~~~~~~~~i~~I~~eeG~~gl~kG~vPRv~w 293 (323)
T KOG0768|consen 231 ALCGALAGGIT--AALTTPLDVIKTRIMLAKHGRSCSTLLRVIKSIYREEGFAGLFKGLVPRVFW 293 (323)
T ss_pred HHHHHHhhhHH--hhcCChHHHHHHHHhhcccccchhHHHHHHHHHHHhcchHHHhhcchhHHHH
Confidence 33444445444 455555544444333333333 4889999999999999999999999875
No 17
>KOG0758|consensus
Probab=98.88 E-value=1.7e-09 Score=65.84 Aligned_cols=60 Identities=23% Similarity=0.355 Sum_probs=41.4
Q ss_pred HHHHhhhHHHHHHHhHhhcccchhccccc--cccCc-HHHHHHHHHHHhchhccccccchhhhcC
Q psy16296 9 YARFSYGYELLIFLVALPMNQKHLKNQHV--RVYKG-SIDCMLQTIKHEGFMALYKGFIPTWFIL 70 (70)
Q Consensus 9 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~i~~~eG~~gl~rG~~~~~~r~ 70 (70)
.++..+|+.. |....|.+..+...+++ .+|.+ +.++.++|+++||+++||||+.|.++|.
T Consensus 214 ~aGg~aG~a~--W~~v~P~DvvKS~iQt~~~~~~~~~~~~~~k~i~~~~G~k~~yrG~gp~~~Ra 276 (297)
T KOG0758|consen 214 LAGGLAGIAF--WLAVFPFDVVKSRLQTDPKPTYKNSIRSVAKKIYRKEGLKGFYRGFGPTLLRA 276 (297)
T ss_pred HhhhHHHHhh--HhhhccHHHHHHHHhcCCCCCccccHHHHHHHHHHhhchhhhhccccHHHhhh
Confidence 3444455554 55555555444444433 45554 5569999999999999999999999984
No 18
>KOG0757|consensus
Probab=98.87 E-value=2e-09 Score=65.28 Aligned_cols=32 Identities=25% Similarity=0.544 Sum_probs=29.4
Q ss_pred cccCcHHHHHHHHHHHhchhccccccchhhhc
Q psy16296 38 RVYKGSIDCMLQTIKHEGFMALYKGFIPTWFI 69 (70)
Q Consensus 38 ~~~~~~~~~~~~i~~~eG~~gl~rG~~~~~~r 69 (70)
.+|.+.++|+++++++||++|||||+.++++-
T Consensus 164 ~~~~~~~qc~~~Vy~~EG~rGfYkGltASyaG 195 (319)
T KOG0757|consen 164 SQYMNVWQCIRRVYHTEGFRGFYKGLTASYAG 195 (319)
T ss_pred cccccHHHHHHHHHHhhhhhHHhhcccHHhcc
Confidence 57999999999999999999999999998753
No 19
>KOG0756|consensus
Probab=98.87 E-value=7.2e-10 Score=67.48 Aligned_cols=57 Identities=28% Similarity=0.295 Sum_probs=42.6
Q ss_pred HhhhHHHHHHHhHhhcccchhcccc-------ccccCcHHHHHHHHHHHhchhccccccchhhhcC
Q psy16296 12 FSYGYELLIFLVALPMNQKHLKNQH-------VRVYKGSIDCMLQTIKHEGFMALYKGFIPTWFIL 70 (70)
Q Consensus 12 ~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~i~~~eG~~gl~rG~~~~~~r~ 70 (70)
+.+|+.. +.++...++|.|.+++ ...++++.+|...|+++||+++||||..|++.|+
T Consensus 213 ~~~gaia--Ga~sv~~~~PiDvvktRMqsl~s~~~~~~t~~~~~~I~k~eGlkafykG~~PRlgrv 276 (299)
T KOG0756|consen 213 GISGAIA--GAASVFGTQPIDVVKTRMQSLKSDKEYKQTIDCAYQILKSEGLKAFYKGLVPRLGRV 276 (299)
T ss_pred hhhhhhc--cccccccCCCcHHHHHHhhhhhccccccchHHHhHHHHHhhhHHHHhcccccccccc
Confidence 3344443 5556666678777653 2335569999999999999999999999998874
No 20
>KOG0767|consensus
Probab=98.85 E-value=4e-09 Score=63.96 Aligned_cols=63 Identities=24% Similarity=0.412 Sum_probs=51.5
Q ss_pred HHHHHHhhhHHHHHHHhHhhcccchhcccccccc-CcHHHHHHHHHHHhchhccccccchhhhc
Q psy16296 7 ELYARFSYGYELLIFLVALPMNQKHLKNQHVRVY-KGSIDCMLQTIKHEGFMALYKGFIPTWFI 69 (70)
Q Consensus 7 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~eG~~gl~rG~~~~~~r 69 (70)
.++.+.++.+...+.+..+|++..+...++.+.+ +++.+++.+|+++||+.+||||+.|-|+|
T Consensus 136 siYlaaSAsAEf~ADiaLcP~EA~KVRvQT~P~fa~~l~~~~pki~k~EG~~~fykGl~PLW~R 199 (333)
T KOG0767|consen 136 SIYLAASASAEFFADIALCPMEAVKVRVQTQPGFANTLRDGFPKIYKEEGLGGFYKGLVPLWMR 199 (333)
T ss_pred hhhhhhhhHHHHHHHHHhCchhhheEEEeccCcccchhHHHHHHHHHHhhhhhHhcCCchHHHh
Confidence 3444556777777788888888887777776665 56789999999999999999999999887
No 21
>KOG0751|consensus
Probab=98.85 E-value=1.5e-09 Score=70.16 Aligned_cols=62 Identities=26% Similarity=0.322 Sum_probs=43.1
Q ss_pred HHHHHHhhhHHHHHHHhHhhcccchhc-----cccccccCcHHHHHHHHHHHhchhccccccchhhhcC
Q psy16296 7 ELYARFSYGYELLIFLVALPMNQKHLK-----NQHVRVYKGSIDCMLQTIKHEGFMALYKGFIPTWFIL 70 (70)
Q Consensus 7 ~~~~~~~~g~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~i~~~eG~~gl~rG~~~~~~r~ 70 (70)
.+.+++.||.++ ..+.+|.+..+.. .+.+.+|++++||+++|+++||+++||||-.++++|.
T Consensus 541 LlaagaiAGvPA--A~LvTPaDVIKTRLQvaaRaGqTtYnGv~d~~rkilkEEgp~afwKGtaARV~RS 607 (694)
T KOG0751|consen 541 LLAAGAIAGVPA--ASLVTPADVIKTRLQVAARAGQTTYNGVIDCFRKILKEEGPRAFWKGTAARVFRS 607 (694)
T ss_pred HHHHHHhcCCch--hhcCCHHHHHHHHheeccccCCceechHHHHHHHHHHhhChHhhhcccceeeecc
Confidence 344455555544 3344444333322 1235679999999999999999999999999998874
No 22
>KOG0749|consensus
Probab=98.84 E-value=4e-09 Score=63.62 Aligned_cols=61 Identities=21% Similarity=0.222 Sum_probs=43.2
Q ss_pred HHHHHHhhhHHHHHHHhHhhcccchhcc--------ccccccCcHHHHHHHHHHHhchhccccccchhhhc
Q psy16296 7 ELYARFSYGYELLIFLVALPMNQKHLKN--------QHVRVYKGSIDCMLQTIKHEGFMALYKGFIPTWFI 69 (70)
Q Consensus 7 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~i~~~eG~~gl~rG~~~~~~r 69 (70)
++++++..+-.. ...+-...+|.|++ ++...|++.+||+++|+++||..+||||...+++|
T Consensus 212 ~f~~sf~iaq~v--T~~ag~~sYP~DTVRRRmm~~~~~~~~Y~~TldC~rkI~k~EG~~affkGa~sNilR 280 (298)
T KOG0749|consen 212 NFAASFAIAQVV--TTGAGLLSYPLDTVRRRMMQSKGADLKYTGTLDCWRKIYKEEGGKAFFKGALSNILR 280 (298)
T ss_pred hHHHHHHHHHHH--HHhcccccccchHHHHHHhhccCcccccCcHHHHHHHHHHHhchHHHhhhHHHHHhh
Confidence 444555433332 33334444555542 34678999999999999999999999999999887
No 23
>PTZ00168 mitochondrial carrier protein; Provisional
Probab=98.82 E-value=3.3e-09 Score=63.67 Aligned_cols=56 Identities=18% Similarity=0.053 Sum_probs=43.0
Q ss_pred HhhhHHHHHHHhHhhcccchhcccccc--ccCcHHHHHHHHHHHhchhccccccchhhhcC
Q psy16296 12 FSYGYELLIFLVALPMNQKHLKNQHVR--VYKGSIDCMLQTIKHEGFMALYKGFIPTWFIL 70 (70)
Q Consensus 12 ~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~eG~~gl~rG~~~~~~r~ 70 (70)
+.+|+.+ +.++..+.+|.|.+|+.. ..++..+|++++ ++||++|||||+.|+++|.
T Consensus 183 ~~aG~~a--g~~a~~~t~P~DvvKtr~q~~~~~~~~~~~~i-~~eG~~glyrG~~~r~~r~ 240 (259)
T PTZ00168 183 AICGGLA--GGIAGFLTTPVDVIKSRQIIYGKSYIETVTEI-AEEGYLTFYKGCCFRSSYL 240 (259)
T ss_pred HHHHHHH--HHHHHHhCChHHHHHHHHHhccccHHHHHHHH-HHhCHHHHHccchHHHHHH
Confidence 4455544 677777788888777532 235778999998 9999999999999999873
No 24
>KOG0751|consensus
Probab=98.81 E-value=1.8e-09 Score=69.86 Aligned_cols=33 Identities=36% Similarity=0.820 Sum_probs=30.7
Q ss_pred ccccCcHHHHHHHHHHHhchhccccccchhhhc
Q psy16296 37 VRVYKGSIDCMLQTIKHEGFMALYKGFIPTWFI 69 (70)
Q Consensus 37 ~~~~~~~~~~~~~i~~~eG~~gl~rG~~~~~~r 69 (70)
+..|+|++||++++++.||+.|||||+.|.++-
T Consensus 386 e~~YkNS~DCfkKv~r~EG~~GLYrGLlPQliG 418 (694)
T KOG0751|consen 386 ELMYKNSFDCFKKVLRYEGFFGLYRGLLPQLIG 418 (694)
T ss_pred hhhhcchHHHHHHHHhhhhHHHHHhhhhhhhhc
Confidence 467999999999999999999999999999874
No 25
>KOG0762|consensus
Probab=98.80 E-value=3.7e-09 Score=63.29 Aligned_cols=49 Identities=14% Similarity=0.300 Sum_probs=37.7
Q ss_pred HhHhhcccchhccc----cc-cccCcHHHHHHHHHHHhchhccccccchhhhcC
Q psy16296 22 LVALPMNQKHLKNQ----HV-RVYKGSIDCMLQTIKHEGFMALYKGFIPTWFIL 70 (70)
Q Consensus 22 ~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~i~~~eG~~gl~rG~~~~~~r~ 70 (70)
+.+....+|.|.+| .+ ..|++..||+++.+++||.+.||||+..+++|.
T Consensus 213 m~SWla~Yp~DVVKtrlQad~~~Y~g~~dC~~ks~r~eG~r~f~rGL~saliRA 266 (311)
T KOG0762|consen 213 MASWLACYPLDVVKTRLQADHLAYEGIADCFRKSYRQEGYRVFFRGLNSALIRA 266 (311)
T ss_pred HHHHHHhccHHHHHHHHhccccchhhHHHHHHHHHHhcCceeehhhhhHHHHHh
Confidence 33344445555544 33 359999999999999999999999999999883
No 26
>KOG0757|consensus
Probab=98.71 E-value=9.9e-09 Score=62.29 Aligned_cols=51 Identities=20% Similarity=0.309 Sum_probs=42.3
Q ss_pred HHHhHhhcccchhccc-----cccccCcHHHHHHHHHHHhchhccccccchhhhcC
Q psy16296 20 IFLVALPMNQKHLKNQ-----HVRVYKGSIDCMLQTIKHEGFMALYKGFIPTWFIL 70 (70)
Q Consensus 20 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~i~~~eG~~gl~rG~~~~~~r~ 70 (70)
+-.+++.+.+|.+.+. +..+|+++++|++.++++||..+||||+.+.++|.
T Consensus 243 aK~~As~iaYPHEVvRTRLReeg~KY~gfvqt~~~v~keEG~~~lYrGL~~~L~R~ 298 (319)
T KOG0757|consen 243 AKFIASIIAYPHEVVRTRLREEGTKYTGFVQTLKLVFKEEGYPGLYRGLTTQLLRT 298 (319)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhccchhhHHHHHHHHHHhcChHHHHhHHHHHHHHh
Confidence 3566777778876543 24589999999999999999999999999999984
No 27
>KOG0759|consensus
Probab=98.68 E-value=6.9e-09 Score=62.82 Aligned_cols=34 Identities=32% Similarity=0.527 Sum_probs=31.8
Q ss_pred cccccCcHHHHHHHHHHHhchhccccccchhhhc
Q psy16296 36 HVRVYKGSIDCMLQTIKHEGFMALYKGFIPTWFI 69 (70)
Q Consensus 36 ~~~~~~~~~~~~~~i~~~eG~~gl~rG~~~~~~r 69 (70)
+.++|+|++|.+.+|+|+||+..||+|+.|+..|
T Consensus 134 ~RRNYknv~dgL~rI~reEG~~~L~~G~~~tv~R 167 (286)
T KOG0759|consen 134 QRRNYKNVFDGLVRITREEGVTALFRGCKPTVSR 167 (286)
T ss_pred HhhhhhhHhhHHhhhhhhhhHHHHHcCchHHHHH
Confidence 4678999999999999999999999999999877
No 28
>PTZ00168 mitochondrial carrier protein; Provisional
Probab=98.65 E-value=1.7e-08 Score=60.57 Aligned_cols=49 Identities=10% Similarity=0.023 Sum_probs=38.9
Q ss_pred HHhHhhcccchhcccccc---ccCcHHHHHHHHHHHhchhc-cccccchhhhc
Q psy16296 21 FLVALPMNQKHLKNQHVR---VYKGSIDCMLQTIKHEGFMA-LYKGFIPTWFI 69 (70)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~eG~~g-l~rG~~~~~~r 69 (70)
+.++..+..|.|.+|+.. .+++..+++++++++||++| +|||+.++++|
T Consensus 95 g~~a~~~~~P~dvvKtRlQ~~~~~~~~~~~~~i~~~eG~~g~~y~G~~~~l~r 147 (259)
T PTZ00168 95 EITACIVRLPFEIVKQNMQVSGNISVLKTIYEITQREGLPSFLGKSYFVMIVR 147 (259)
T ss_pred HHhhheeeChHHHHHHHHHhcCCCcHHHHHHHHHHccCccccccchHHHHHHH
Confidence 666667777777665422 24689999999999999997 68999999987
No 29
>KOG0755|consensus
Probab=98.63 E-value=8.3e-09 Score=61.90 Aligned_cols=59 Identities=27% Similarity=0.391 Sum_probs=43.9
Q ss_pred HHHhhhHHHHHHHhHhhcccchhcc-------ccccccCcHHHHHHHHHHHhchhccccccchhhhcC
Q psy16296 10 ARFSYGYELLIFLVALPMNQKHLKN-------QHVRVYKGSIDCMLQTIKHEGFMALYKGFIPTWFIL 70 (70)
Q Consensus 10 ~~~~~g~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~i~~~eG~~gl~rG~~~~~~r~ 70 (70)
..++++... +...+..++|.|.+ +.+..|++..||+.+++|.||+-++|||+.+.++|+
T Consensus 230 ~~lta~~is--G~~vsvam~p~Dvv~TRlYNQ~~d~lYkg~iDC~lk~lRsEGv~~lYKGF~a~~~Ri 295 (320)
T KOG0755|consen 230 LHLTASLIS--GSGVSVAMTPFDVVTTRLYNQKVDELYKGPIDCILKTLRSEGVYALYKGFWAHYLRI 295 (320)
T ss_pred HHhhHhhhc--ccceEEEecchHHHHHHHHhcccchhhcCcHHHHHHHHHhhhHHHHHhhHHHHHhhc
Confidence 455555554 44334444566643 335679999999999999999999999999999885
No 30
>KOG0760|consensus
Probab=98.58 E-value=5.5e-08 Score=58.92 Aligned_cols=47 Identities=19% Similarity=0.331 Sum_probs=39.3
Q ss_pred HHhHhhcccchhcccc-----ccccCcHHHHHHHHHHHhchhccccccchhh
Q psy16296 21 FLVALPMNQKHLKNQH-----VRVYKGSIDCMLQTIKHEGFMALYKGFIPTW 67 (70)
Q Consensus 21 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~i~~~eG~~gl~rG~~~~~ 67 (70)
.++...+..|.|.+|+ ...|+++++|+++++|+||+.+||+++..++
T Consensus 122 t~~sDAvm~P~dvVKQR~Qm~~~~y~sv~~ci~~v~r~EGl~AFYrsY~T~l 173 (302)
T KOG0760|consen 122 TLISDAVMNPFDVVKQRMQMYNSPYKSVWDCIRTVYRNEGLGAFYRSYPTQL 173 (302)
T ss_pred HHHHHHhcCHHHHHHHHHhcccCCCccHHHHHHHHHHhcchhHhhhccceee
Confidence 5667777788887764 4579999999999999999999999987654
No 31
>KOG0768|consensus
Probab=98.52 E-value=1e-07 Score=58.81 Aligned_cols=49 Identities=20% Similarity=0.282 Sum_probs=39.9
Q ss_pred HHhHhhcccchhcccc---ccccCcHHHHHHHHHHHhchhccccccchhhhc
Q psy16296 21 FLVALPMNQKHLKNQH---VRVYKGSIDCMLQTIKHEGFMALYKGFIPTWFI 69 (70)
Q Consensus 21 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~~eG~~gl~rG~~~~~~r 69 (70)
.++.+.+..|.+..|+ ..++.+..+.++.|+++||++|||||+..+++|
T Consensus 147 ~i~a~~irvP~EvvKQR~Q~~~~~~~~~~~~~i~~~~G~~GlYrG~gstl~R 198 (323)
T KOG0768|consen 147 EIVACLIRVPTEVVKQRAQAGQFERLCQILRSIISKEGFRGLYRGYGSTLLR 198 (323)
T ss_pred HHHHHhhhchHHHHHHHHHhhccchHHHHHHHHHHhhccchhhhhhhHHHhh
Confidence 5566667777777664 234667899999999999999999999999988
No 32
>KOG0766|consensus
Probab=98.51 E-value=1.5e-08 Score=60.15 Aligned_cols=57 Identities=19% Similarity=0.182 Sum_probs=47.8
Q ss_pred HHhhhHHHHHHHhHhhcccchhcccc-----ccccCcHHHHHHHHHHHhchhccccccchhhhc
Q psy16296 11 RFSYGYELLIFLVALPMNQKHLKNQH-----VRVYKGSIDCMLQTIKHEGFMALYKGFIPTWFI 69 (70)
Q Consensus 11 ~~~~g~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~i~~~eG~~gl~rG~~~~~~r 69 (70)
.++.|+.. +..++.+.+|.|.+|+ ..+|++..+.+..|+++||++|||.|..++++|
T Consensus 216 N~~sgi~s--g~lAt~vT~Pfd~iKTrmQLeP~kf~n~~~~~tli~kneg~rgff~G~~~R~lR 277 (297)
T KOG0766|consen 216 NFSSGIFS--GILATLVTQPFDVIKTRMQLEPLKFQNIGQAVTLIFKNEGLRGFFQGGIPRALR 277 (297)
T ss_pred ehhHHHHH--HHHHHHhcCchhhhhhhhccchHHhhhhhhheeeeeccccHHHHhhcccHHHHH
Confidence 34455544 7788888899998875 457899999999999999999999999999887
No 33
>KOG0749|consensus
Probab=98.50 E-value=4.9e-08 Score=59.03 Aligned_cols=64 Identities=19% Similarity=0.342 Sum_probs=48.0
Q ss_pred hHHHHHHHhhhHHHHHHHhHhhcccchhccc-----------cccccCcHHHHHHHHHHHhchhccccccchhhhcC
Q psy16296 5 GRELYARFSYGYELLIFLVALPMNQKHLKNQ-----------HVRVYKGSIDCMLQTIKHEGFMALYKGFIPTWFIL 70 (70)
Q Consensus 5 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~i~~~eG~~gl~rG~~~~~~r~ 70 (70)
.+++...|.+|... ..++.....|.+.+| .+.+|+++.||+.++.++||+.+||||..++++|.
T Consensus 9 ~~~F~~Dfl~Ggva--AavsKTavAPIERVKLlLQ~Q~~~~~~~~~YkGi~Dc~~r~~~eqG~~sfWRGN~anViRy 83 (298)
T KOG0749|consen 9 AKSFAKDFLAGGVA--AAVSKTAVAPIERVKLLLQVQDSEIAADKRYKGIVDCFVRIPKEQGFLSFWRGNLANVIRY 83 (298)
T ss_pred HHHHHHHHHcchHH--hhhhhhccccHHHHHHHHHhccchhhhccCccchhheeeechhhhhhhheecccccchhhc
Confidence 34566677777766 555555555554322 13489999999999999999999999999999884
No 34
>KOG0769|consensus
Probab=98.42 E-value=2.3e-07 Score=56.35 Aligned_cols=55 Identities=27% Similarity=0.328 Sum_probs=43.3
Q ss_pred HhhhHHHHHHHhHhhcccchhccc----------cccccCcHHHHHHHHHHHhchhccccccchhhh
Q psy16296 12 FSYGYELLIFLVALPMNQKHLKNQ----------HVRVYKGSIDCMLQTIKHEGFMALYKGFIPTWF 68 (70)
Q Consensus 12 ~~~g~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~i~~~eG~~gl~rG~~~~~~ 68 (70)
..+|++. ++.+....+|.|..+ .+.+|++..||+.+|+++||+.++|+|+.|.+.
T Consensus 7 A~sGAvG--s~iA~t~~YPLDT~ksr~Q~e~~~~~~~k~r~t~dvm~eiik~eg~lsLYqGl~p~~~ 71 (308)
T KOG0769|consen 7 ALSGAVG--SLIAMTIFYPLDTVKSRLQAEVRVRGQRKYRYTSDVMWEIIKEEGVLSLYQGLGPVLV 71 (308)
T ss_pred HhhhhHH--HHHHHHhhcchHHHHHHHHHHHHhhhccchhHHHHHHHHHHhccchHHHhccccHHHH
Confidence 3455555 666667777877543 356799999999999999999999999999764
No 35
>KOG0761|consensus
Probab=98.40 E-value=8.7e-08 Score=59.33 Aligned_cols=62 Identities=16% Similarity=0.201 Sum_probs=46.7
Q ss_pred HHHHHHhhhHHHHHHHhHhhcccchhcccc-----------ccccCcHHHHHHHHHHHhchhccccccchhhhcC
Q psy16296 7 ELYARFSYGYELLIFLVALPMNQKHLKNQH-----------VRVYKGSIDCMLQTIKHEGFMALYKGFIPTWFIL 70 (70)
Q Consensus 7 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~i~~~eG~~gl~rG~~~~~~r~ 70 (70)
++.++|++|+.+ +.++....+|.|..|+ +..-++.+..++.|++.+|++|||.|..|+++|+
T Consensus 261 ~f~~sF~sG~ia--GtvAAi~T~PfDV~KT~~QI~~~~~~~~~~~~st~~~l~~i~~~~G~~~L~sG~~pR~iKv 333 (361)
T KOG0761|consen 261 SFGASFVSGFIA--GTVAAIATCPFDVVKTRRQIEGGTSDDDRMTRSTFMTLKTIWRTGGLKGLFSGLLPRLIKV 333 (361)
T ss_pred ceeeeehhhhHH--HHHHHHHcCCchhhhHHHHHhcCCCCCccccchhhhhhHHHHHccchhhhhhccccceeee
Confidence 344567777776 7777777778776653 1123556667899999999999999999999874
No 36
>KOG0760|consensus
Probab=98.38 E-value=2.1e-07 Score=56.45 Aligned_cols=61 Identities=16% Similarity=0.194 Sum_probs=42.6
Q ss_pred HHHHHHHhhhHHHHHHHhHhhcccchhcccc----------ccccCcHHHHHHHHHHHhchhccccccchhhh
Q psy16296 6 RELYARFSYGYELLIFLVALPMNQKHLKNQH----------VRVYKGSIDCMLQTIKHEGFMALYKGFIPTWF 68 (70)
Q Consensus 6 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~i~~~eG~~gl~rG~~~~~~ 68 (70)
.|.+++..+|+.+ ..+++|++..+...++ ..+.+++.+.++.|++..|++|||||+.|+++
T Consensus 204 ih~i~GalaGa~A--aa~TTPLDvvKT~Lq~q~s~~~~~~~~~k~~gi~~a~R~Iy~~~G~~gf~rG~~~Rm~ 274 (302)
T KOG0760|consen 204 IHIIAGALAGALA--AALTTPLDVVKTLLQTQGSSALSILIRRKASGISDAFRTIYQKHGVKGFFRGLKPRMV 274 (302)
T ss_pred HHHHhhhhhHHHH--HHhCCcHHHHHHHHHhhcchhhHHHHHHhhccHHHHHHHHHHhcCchhhhhcccceee
Confidence 4455555555544 5566665555433221 23568899999999999999999999999875
No 37
>KOG0765|consensus
Probab=98.28 E-value=6.6e-07 Score=54.82 Aligned_cols=30 Identities=23% Similarity=0.524 Sum_probs=27.5
Q ss_pred ccCcHHHHHHHHHHHhchhccccccchhhh
Q psy16296 39 VYKGSIDCMLQTIKHEGFMALYKGFIPTWF 68 (70)
Q Consensus 39 ~~~~~~~~~~~i~~~eG~~gl~rG~~~~~~ 68 (70)
.|.+-.|.+++|++.+|++|||||+..+++
T Consensus 180 ~~~~g~Dv~rkI~k~DG~rGfYRGf~aS~l 209 (333)
T KOG0765|consen 180 RYGNGFDVIRKILKTDGPRGFYRGFGASLL 209 (333)
T ss_pred ccccchHHHHHHHHhcCcchhhhhhhhhhh
Confidence 478889999999999999999999998775
No 38
>KOG0767|consensus
Probab=98.27 E-value=1.9e-07 Score=56.81 Aligned_cols=47 Identities=21% Similarity=0.191 Sum_probs=39.2
Q ss_pred hHhhcccchhcccc-----ccccCcHHHHHHHHHHHhchhccccccchhhhc
Q psy16296 23 VALPMNQKHLKNQH-----VRVYKGSIDCMLQTIKHEGFMALYKGFIPTWFI 69 (70)
Q Consensus 23 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~i~~~eG~~gl~rG~~~~~~r 69 (70)
.++....|.|.+|. ..+|++..+.++.++++||+++|+|||.|+++-
T Consensus 51 ~TH~aitPLDlvKcrmQv~P~kY~~~~~GFk~~iaeeG~rgl~~Gw~pTllG 102 (333)
T KOG0767|consen 51 TTHTAITPLDLVKCRMQVDPAKYKSIVQGFKVTIAEEGVRGLARGWAPTLLG 102 (333)
T ss_pred cccccccchhheeeeeeeChhhhccchhHHHHHHHhhhhHHHHhccccceec
Confidence 45556678887764 347999999999999999999999999999863
No 39
>KOG0765|consensus
Probab=98.26 E-value=3.9e-07 Score=55.79 Aligned_cols=34 Identities=26% Similarity=0.488 Sum_probs=29.7
Q ss_pred cccccCcHHHHHHHHHHHhchhccccccchhhhc
Q psy16296 36 HVRVYKGSIDCMLQTIKHEGFMALYKGFIPTWFI 69 (70)
Q Consensus 36 ~~~~~~~~~~~~~~i~~~eG~~gl~rG~~~~~~r 69 (70)
++..|++.+++..+|+|.||++|||||+..++..
T Consensus 66 ~~~vyrs~f~~~~~I~r~eG~~GLYRGF~~s~~~ 99 (333)
T KOG0765|consen 66 KNTVYRSTFDAASKILRREGVRGLYRGFGTSLPG 99 (333)
T ss_pred ccchhHHHHHHHHHHHHhcCCchhhhhhcccccc
Confidence 3556999999999999999999999999877653
No 40
>KOG0766|consensus
Probab=98.26 E-value=8e-07 Score=52.99 Aligned_cols=32 Identities=19% Similarity=0.334 Sum_probs=29.5
Q ss_pred cccCcHHHHHHHHHHHhchhccccccchhhhc
Q psy16296 38 RVYKGSIDCMLQTIKHEGFMALYKGFIPTWFI 69 (70)
Q Consensus 38 ~~~~~~~~~~~~i~~~eG~~gl~rG~~~~~~r 69 (70)
..|.+....+++||.+||.+|||||+.++++|
T Consensus 141 Y~Y~siy~air~Iy~kEG~~GfFrGfgaT~LR 172 (297)
T KOG0766|consen 141 YGYESIYAAIRSIYHKEGHRGFFRGFGATLLR 172 (297)
T ss_pred ccHHHHHHHHHHHHHhcchhhhhhcchhhHhc
Confidence 35778899999999999999999999999987
No 41
>KOG0763|consensus
Probab=98.26 E-value=3.7e-07 Score=54.36 Aligned_cols=56 Identities=25% Similarity=0.419 Sum_probs=42.9
Q ss_pred HHhhhHHHHHHHhHhhcccchhcccc-----ccccCcHHHHHHHHHHHhchhccccccchhhh
Q psy16296 11 RFSYGYELLIFLVALPMNQKHLKNQH-----VRVYKGSIDCMLQTIKHEGFMALYKGFIPTWF 68 (70)
Q Consensus 11 ~~~~g~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~i~~~eG~~gl~rG~~~~~~ 68 (70)
.+.+|... +.......||.|..|. +..|++..+|+.+.|+++|++|||+|-.|.+.
T Consensus 18 DllAGaaG--G~A~Vy~gQPlDTvKVK~QTFP~lYrg~~dC~l~TY~~dGlRGlYaGt~PAl~ 78 (301)
T KOG0763|consen 18 DLLAGAAG--GTACVYTGQPLDTVKVKMQTFPDLYRGLTDCFLKTYRQDGLRGLYAGTVPALF 78 (301)
T ss_pred HHhccccC--CceeeeeCCCcceeeeehccChHHHhhHHHHHHHHHHHhhhhhhhcCccHHHH
Confidence 34455544 4445556788887764 34699999999999999999999999998764
No 42
>KOG0750|consensus
Probab=98.11 E-value=3.3e-07 Score=55.43 Aligned_cols=64 Identities=25% Similarity=0.284 Sum_probs=41.3
Q ss_pred hhHHHHHHHhhhHHHHHHHhHhhcccchhcccccc-----ccCcHHHHHHHHHHHhchhccccccchhhhc
Q psy16296 4 LGRELYARFSYGYELLIFLVALPMNQKHLKNQHVR-----VYKGSIDCMLQTIKHEGFMALYKGFIPTWFI 69 (70)
Q Consensus 4 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~i~~~eG~~gl~rG~~~~~~r 69 (70)
+++...++..+|..- .++++|++.-+...+... .-...-....+++++||+.+||||++++++|
T Consensus 112 ~~~gmlAG~laG~~q--IvvttPmelLKIqmQd~gr~a~~~~~~at~l~~~lLr~~Gif~LYkG~G~T~aR 180 (304)
T KOG0750|consen 112 LGRGMLAGGLAGICQ--IVVTTPMELLKIQMQDAGRVAAATKVFATRLTWKLLRDEGIFGLYKGLGATLAR 180 (304)
T ss_pred cchhhhhccccceEE--EEEeccHHHHHhhhhcCcccccccccchhHHHHHHHHhhhHHHHHhccchhhhc
Confidence 445555555555544 456677665543322211 1123346688999999999999999999987
No 43
>KOG0036|consensus
Probab=98.10 E-value=1.2e-06 Score=55.89 Aligned_cols=57 Identities=7% Similarity=-0.091 Sum_probs=45.3
Q ss_pred HHhhhHHHHHHHhHhhcccchhcccc-------ccccCcHHHHHHHHHHHhchhccccccchhhhc
Q psy16296 11 RFSYGYELLIFLVALPMNQKHLKNQH-------VRVYKGSIDCMLQTIKHEGFMALYKGFIPTWFI 69 (70)
Q Consensus 11 ~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~i~~~eG~~gl~rG~~~~~~r 69 (70)
-+.||..+ +++++..+.|.|..|. +.+..++..+++.++++.|+++||||.+.+++.
T Consensus 190 ~liAGGiA--GavSRTcTAPlDRLKV~lqv~~~k~~~~~v~~~~k~l~~eggiksf~rGNGiNViK 253 (463)
T KOG0036|consen 190 FLIAGGIA--GAVSRTCTAPLDRLKVFLQVQSPKANILPLLKAVKSLWREGGIKSFFRGNGLNVIK 253 (463)
T ss_pred hhcccccc--ccccccccCchhhhheeeeccCCCCCcccHHHHHHHHHhccCceeeeccCceeeEE
Confidence 35577766 8888888899987652 223346899999999999999999999987765
No 44
>KOG0763|consensus
Probab=98.07 E-value=1.3e-06 Score=52.05 Aligned_cols=50 Identities=18% Similarity=0.197 Sum_probs=36.5
Q ss_pred HHhHhhcccchhccccccc---cCcHHHHHHHHHHHhchhccccccchhhhcC
Q psy16296 21 FLVALPMNQKHLKNQHVRV---YKGSIDCMLQTIKHEGFMALYKGFIPTWFIL 70 (70)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~eG~~gl~rG~~~~~~r~ 70 (70)
++.......|.|.+|...+ -.+++..+-.++|+||+.+||+|+.|+++|+
T Consensus 227 GicLWtsv~PaDviKSRiQV~~~~~fm~t~~avVr~eGi~aLY~GLlpt~lRt 279 (301)
T KOG0763|consen 227 GICLWTSVFPADVIKSRIQVLSMNGFMFTLGAVVRNEGILALYSGLLPTMLRT 279 (301)
T ss_pred eeEEEeeeccHHHHhhHheecccchHHHHHHHHHhhhhHHHHHhccchHHHhh
Confidence 4444455566676664332 2356667778999999999999999999984
No 45
>KOG0755|consensus
Probab=98.04 E-value=2.6e-06 Score=51.38 Aligned_cols=36 Identities=14% Similarity=0.219 Sum_probs=32.1
Q ss_pred ccccccCcHHHHHHHHHHHhchhccccccchhhhcC
Q psy16296 35 QHVRVYKGSIDCMLQTIKHEGFMALYKGFIPTWFIL 70 (70)
Q Consensus 35 ~~~~~~~~~~~~~~~i~~~eG~~gl~rG~~~~~~r~ 70 (70)
+..+.|.++++.+++|++++|++|||||..+.++|+
T Consensus 165 G~Q~~~t~m~nal~~I~k~nGVkGL~rGs~Aai~Rt 200 (320)
T KOG0755|consen 165 GYQHGYTSMFNALRRIYKENGVKGLFRGSDAAILRT 200 (320)
T ss_pred chhhcccHHHHHHHHHHHhcCcceeeechHHhhhhh
Confidence 345678999999999999999999999999988874
No 46
>KOG2745|consensus
Probab=97.98 E-value=5.7e-06 Score=50.53 Aligned_cols=35 Identities=20% Similarity=0.461 Sum_probs=32.5
Q ss_pred cccccccCcHHHHHHHHHHHhchhccccccchhhh
Q psy16296 34 NQHVRVYKGSIDCMLQTIKHEGFMALYKGFIPTWF 68 (70)
Q Consensus 34 ~~~~~~~~~~~~~~~~i~~~eG~~gl~rG~~~~~~ 68 (70)
++.+.+|.+..+.+..|+|+||+.|||.|+.|+++
T Consensus 169 VGrEtkYtg~~~Sl~~I~kqEG~~GfFaGLvP~LL 203 (321)
T KOG2745|consen 169 VGRETKYTGLVGSLATIGKQEGIAGFFAGLVPRLL 203 (321)
T ss_pred HcccchhhHHHHHHHHHHHhcchhhHHhhhhHHHH
Confidence 46788999999999999999999999999999876
No 47
>KOG2954|consensus
Probab=97.92 E-value=8.3e-06 Score=51.06 Aligned_cols=32 Identities=38% Similarity=0.670 Sum_probs=29.2
Q ss_pred cccCcHHHHHHHHHHHhchhccccccchhhhc
Q psy16296 38 RVYKGSIDCMLQTIKHEGFMALYKGFIPTWFI 69 (70)
Q Consensus 38 ~~~~~~~~~~~~i~~~eG~~gl~rG~~~~~~r 69 (70)
.+|.+.+||++.+...||+.|||||+++.+++
T Consensus 327 t~Y~G~fDC~rt~~~sEGv~glYkGfGAvilq 358 (427)
T KOG2954|consen 327 TKYSGYFDCYRTTLESEGVWGLYKGFGAVILQ 358 (427)
T ss_pred eccchHHHHHHHHHHhhhHHHHHhhhhHHHHH
Confidence 47999999999999999999999999987764
No 48
>KOG0756|consensus
Probab=97.91 E-value=6e-06 Score=50.69 Aligned_cols=31 Identities=29% Similarity=0.416 Sum_probs=28.3
Q ss_pred ccCcHHHHHHHHHHHhchhccccccchhhhc
Q psy16296 39 VYKGSIDCMLQTIKHEGFMALYKGFIPTWFI 69 (70)
Q Consensus 39 ~~~~~~~~~~~i~~~eG~~gl~rG~~~~~~r 69 (70)
.++++++++++|+|+||++|+|+|..++.+|
T Consensus 148 ~~~g~~~~~~~IvkeeGi~gi~~Gv~at~~r 178 (299)
T KOG0756|consen 148 KQKGFIHVVRHIVKEEGIRGIYRGVTATAAR 178 (299)
T ss_pred ccccHHHHHHHHHHhcCccccccCccHHHHH
Confidence 3469999999999999999999999998876
No 49
>KOG0769|consensus
Probab=97.89 E-value=1.5e-05 Score=48.64 Aligned_cols=29 Identities=17% Similarity=0.416 Sum_probs=25.8
Q ss_pred CcHHHHHHHHHHHhchhccccccchhhhc
Q psy16296 41 KGSIDCMLQTIKHEGFMALYKGFIPTWFI 69 (70)
Q Consensus 41 ~~~~~~~~~i~~~eG~~gl~rG~~~~~~r 69 (70)
++..+.+..++++||+.|||||+.+.+++
T Consensus 251 r~il~ll~~~~r~eGi~Gl~KGl~akilq 279 (308)
T KOG0769|consen 251 RTILGLLYAIWRKEGILGLFKGLEAKILQ 279 (308)
T ss_pred cchHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 46688999999999999999999998764
No 50
>KOG0770|consensus
Probab=97.83 E-value=2.8e-06 Score=51.83 Aligned_cols=54 Identities=17% Similarity=0.105 Sum_probs=41.1
Q ss_pred hhhHHHHHHHhHhhcccchhccccc-------cccCcHHHHHHHHHHHhchh-ccccccchhhh
Q psy16296 13 SYGYELLIFLVALPMNQKHLKNQHV-------RVYKGSIDCMLQTIKHEGFM-ALYKGFIPTWF 68 (70)
Q Consensus 13 ~~g~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~i~~~eG~~-gl~rG~~~~~~ 68 (70)
.+|.+. +...--++++.|..|+. .+|+++++|.+.||-+||++ |||+|+.|.++
T Consensus 37 ~~GGIg--Ga~gd~~MHslDTvKTRqQ~a~~~nky~~m~~~yrTiw~eeGv~~GlY~Gi~p~~~ 98 (353)
T KOG0770|consen 37 LWGGIG--GAFGDGMMHSLDTVKTRQQSAIIMNKYQSMLQMYRTIWVEEGVKRGLYRGIAPGVT 98 (353)
T ss_pred eecccc--cccccccccchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhchhhhhhcccchHhh
Confidence 344444 55666677777776642 25889999999999999997 99999998765
No 51
>KOG0761|consensus
Probab=97.77 E-value=1.8e-05 Score=49.37 Aligned_cols=31 Identities=32% Similarity=0.711 Sum_probs=29.0
Q ss_pred cccCcHHHHHHHHHHHhchhccccccchhhh
Q psy16296 38 RVYKGSIDCMLQTIKHEGFMALYKGFIPTWF 68 (70)
Q Consensus 38 ~~~~~~~~~~~~i~~~eG~~gl~rG~~~~~~ 68 (70)
.+|++.+|.+.+|.|+||++.||+|+.|+++
T Consensus 95 ~qf~GT~Daf~KI~RhEGirsLWsGL~ptlv 125 (361)
T KOG0761|consen 95 GQFKGTLDAFTKIARHEGIRSLWSGLSPTLV 125 (361)
T ss_pred cccCChHHHHHHHHHhhhhhhhhccCCchhe
Confidence 4699999999999999999999999999875
No 52
>KOG0036|consensus
Probab=97.69 E-value=1.7e-05 Score=50.72 Aligned_cols=57 Identities=23% Similarity=0.165 Sum_probs=43.5
Q ss_pred HHhhhHHHHHHHhHhhcccchhcccc------ccccCcHHHHHHHHHHHhchhccccccchhhhc
Q psy16296 11 RFSYGYELLIFLVALPMNQKHLKNQH------VRVYKGSIDCMLQTIKHEGFMALYKGFIPTWFI 69 (70)
Q Consensus 11 ~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~i~~~eG~~gl~rG~~~~~~r 69 (70)
.+.||..+ +.++....+|.|..|+ ...+.+++++.++++.+||+++||||..|+++-
T Consensus 285 rl~AGglA--GavAQ~~IYPmd~lKtRlq~~~~~~~~~~l~~ak~il~~eg~r~FykG~~p~llG 347 (463)
T KOG0036|consen 285 RLLAGGLA--GAVAQTSIYPMDTLKTRLQCRPLGQGKGLLKLAKDILFQEGPRAFYKGYLPNLLG 347 (463)
T ss_pred hhhccCch--hHHHHhhcChHHHHHHHhhcccccchhhhhhhhhhHHHhhhHHHHHhccccceeE
Confidence 34455544 6777777788877664 234558899999999999999999999998753
No 53
>KOG0770|consensus
Probab=97.59 E-value=6.3e-05 Score=46.10 Aligned_cols=33 Identities=21% Similarity=0.140 Sum_probs=29.2
Q ss_pred ccccCcHHHHHHHHHHHhchhccccccchhhhc
Q psy16296 37 VRVYKGSIDCMLQTIKHEGFMALYKGFIPTWFI 69 (70)
Q Consensus 37 ~~~~~~~~~~~~~i~~~eG~~gl~rG~~~~~~r 69 (70)
..+|.+....++.|+|+||+++||-|+.++++|
T Consensus 169 gynY~~~rga~k~i~KeeG~k~lf~GY~aTlaR 201 (353)
T KOG0770|consen 169 GYNYGYYRGAFKAIWKEEGPKGLFAGYWATLAR 201 (353)
T ss_pred CCchHHHHHHHHHHHHHhCcchhhhHHHHHHHh
Confidence 446777788899999999999999999999987
No 54
>KOG1519|consensus
Probab=94.49 E-value=0.029 Score=33.46 Aligned_cols=28 Identities=32% Similarity=0.731 Sum_probs=22.9
Q ss_pred CcHHHHHHHHHHHhchhccccccchhhhc
Q psy16296 41 KGSIDCMLQTIKHEGFMALYKGFIPTWFI 69 (70)
Q Consensus 41 ~~~~~~~~~i~~~eG~~gl~rG~~~~~~r 69 (70)
.+..|.+-+ ++++|++.+|||+.|.++|
T Consensus 63 ~kT~~aF~q-LR~~GfRn~YRG~~~~Lmq 90 (297)
T KOG1519|consen 63 IKTRDAFLQ-LRRDGFRNLYRGILPPLMQ 90 (297)
T ss_pred chHHHHHHH-HHHhhHHHHHhcccHHHHh
Confidence 455677776 4889999999999998876
No 55
>KOG2745|consensus
Probab=93.54 E-value=0.096 Score=32.58 Aligned_cols=28 Identities=18% Similarity=0.400 Sum_probs=25.1
Q ss_pred CcHHHHHHHHHHHhchhccccccchhhh
Q psy16296 41 KGSIDCMLQTIKHEGFMALYKGFIPTWF 68 (70)
Q Consensus 41 ~~~~~~~~~i~~~eG~~gl~rG~~~~~~ 68 (70)
.|++.-.++|-..+|..|+|||+.|+++
T Consensus 68 P~~fsYakhI~~idG~~gl~rGLtprL~ 95 (321)
T KOG2745|consen 68 PNFFSYAKHIGTIDGYIGLYRGLTPRLA 95 (321)
T ss_pred ccHHHHHHHHhcccccchhhhcccHHHH
Confidence 4778888999999999999999999875
No 56
>KOG1519|consensus
Probab=86.30 E-value=0.67 Score=27.84 Aligned_cols=35 Identities=20% Similarity=0.516 Sum_probs=27.7
Q ss_pred cccccccCcHHHHHHHHHHHhchhccccccchhhhc
Q psy16296 34 NQHVRVYKGSIDCMLQTIKHEGFMALYKGFIPTWFI 69 (70)
Q Consensus 34 ~~~~~~~~~~~~~~~~i~~~eG~~gl~rG~~~~~~r 69 (70)
.+...++.+.++.++. ++..|+--.|||+.|-+.|
T Consensus 148 hkhhdkftntyqafka-lkchgigeyyrglvpilfr 182 (297)
T KOG1519|consen 148 HKHHDKFTNTYQAFKA-LKCHGIGEYYRGLVPILFR 182 (297)
T ss_pred cccccchhhHHHHHHH-hhccccchhhcccchhhhh
Confidence 3445568888887776 5889999999999998765
No 57
>KOG2954|consensus
Probab=78.12 E-value=0.87 Score=29.30 Aligned_cols=27 Identities=19% Similarity=0.395 Sum_probs=22.4
Q ss_pred cHHHHHHHHHHHhchhccccccchhhh
Q psy16296 42 GSIDCMLQTIKHEGFMALYKGFIPTWF 68 (70)
Q Consensus 42 ~~~~~~~~i~~~eG~~gl~rG~~~~~~ 68 (70)
.+..++.+.-++.|+..||||...+++
T Consensus 109 tlip~i~~~~rrQGl~tlWKGmgs~~l 135 (427)
T KOG2954|consen 109 TLIPVIVHLHRRQGLTTLWKGMGSCLL 135 (427)
T ss_pred eeeehhhhhhhhccHHHHHhhccceee
Confidence 456788888999999999999886543
No 58
>PF03201 HMD: H2-forming N5,N10-methylene-tetrahydromethanopterin dehydrogenase; InterPro: IPR004889 This entry represents the C-terminal domain of H2-forming N5,N10-methylene-tetrahydromethanopterin dehydrogenases. The N(5),N(10)-methylenetetrahydromethanopterin dehydrogenase system of methanogenic archaea is composed of H2-forming methylenetetrahydromethanopterin dehydrogenase (Hmd, represented by this entry) and F420-dependent methylenetetrahydromethanopterin dehydrogenase (IPR002844 from INTERPRO) [, ]. Hmd is an iron-sulphur-cluster-free enzyme that contains an intrinsic CO ligand bound to iron []. This domain is found at the C terminus of two distinct subgroups: one has been experimentally characterised as H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase (Hmd or HmdI), and the other one contains isozymes that have not been experimentally characterised (HmdII and HmdIII). Because all three isozyme forms are present in each of the corresponding sequenced genomes, it has been suggested that HmdII and HmdIII may not exhibit Hmd activity and may have a different biological function [].; GO: 0018537 coenzyme F420-dependent N5,N10-methenyltetrahydromethanopterin reductase activity, 0047068 N5,N10-methenyltetrahydromethanopterin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 3F46_A 2B0J_A 3DAG_A 3DAF_A 3H65_A 3F47_A.
Probab=65.29 E-value=19 Score=19.09 Aligned_cols=54 Identities=9% Similarity=0.002 Sum_probs=30.0
Q ss_pred hhhHHHHHHHhHhhcccchhccccccccCcHHHHHHHHHHHhchhccccccchhhh
Q psy16296 13 SYGYELLIFLVALPMNQKHLKNQHVRVYKGSIDCMLQTIKHEGFMALYKGFIPTWF 68 (70)
Q Consensus 13 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~gl~rG~~~~~~ 68 (70)
.+|+..-..+.+..+..|.+.... +-.-....+...++++|+.|+-+-+.|.++
T Consensus 19 ~agiL~Y~~v~t~il~AP~~mie~--qi~~tL~tiasLv~~~Gi~gl~k~Lnp~al 72 (98)
T PF03201_consen 19 YAGILDYYDVGTKILGAPADMIEM--QIIETLQTIASLVETSGIDGLLKALNPEAL 72 (98)
T ss_dssp HHHHHHHHHHHHHTS---HHHHHH--HHHHHHHHHHHHHHHH-GGGGGGTS-GGGG
T ss_pred HHHHHHHHHHHHHHhcChHHHHHH--HHHHHHHHHHHHHHHhhHHHHHHhcCHHHH
Confidence 344433333455666667654322 123456678888999999999998877543
No 59
>PF10126 Nit_Regul_Hom: Uncharacterized protein, homolog of nitrogen regulatory protein PII; InterPro: IPR019296 This family consists of various hypothetical archaeal proteins. It includes a putative nitrogen regulatory protein PII homolog.
Probab=61.36 E-value=5.9 Score=21.35 Aligned_cols=20 Identities=25% Similarity=0.674 Sum_probs=15.8
Q ss_pred HHHHHHHhchhccc----cccchh
Q psy16296 47 MLQTIKHEGFMALY----KGFIPT 66 (70)
Q Consensus 47 ~~~i~~~eG~~gl~----rG~~~~ 66 (70)
...++.+.|+.||| ||++|.
T Consensus 19 aINaLte~GITGFyl~eYkGmSP~ 42 (110)
T PF10126_consen 19 AINALTEGGITGFYLHEYKGMSPQ 42 (110)
T ss_pred HHHHHHhcCccEEEeEeecCCChH
Confidence 45677889999996 888875
No 60
>COG4075 Uncharacterized conserved protein, homolog of nitrogen regulatory protein PII [Function unknown]
Probab=59.93 E-value=6.7 Score=20.87 Aligned_cols=21 Identities=14% Similarity=0.504 Sum_probs=16.3
Q ss_pred HHHHHHHHhchhccc----cccchh
Q psy16296 46 CMLQTIKHEGFMALY----KGFIPT 66 (70)
Q Consensus 46 ~~~~i~~~eG~~gl~----rG~~~~ 66 (70)
-...+....|+.||| ||.+|.
T Consensus 18 kaiN~mad~GiTGFfl~eYrGvsPd 42 (110)
T COG4075 18 KAINIMADAGITGFFLHEYRGVSPD 42 (110)
T ss_pred HHHHHHHhcCcceEEEEEecCcChh
Confidence 355678889999985 888874
No 61
>PF12594 DUF3764: Protein of unknown function (DUF3764); InterPro: IPR022240 This family of proteins is found in bacteria. Proteins in this family are typically between 89 and 101 amino acids in length.
Probab=51.79 E-value=8.5 Score=19.88 Aligned_cols=18 Identities=28% Similarity=0.394 Sum_probs=14.5
Q ss_pred HHHHHHhchhccccccch
Q psy16296 48 LQTIKHEGFMALYKGFIP 65 (70)
Q Consensus 48 ~~i~~~eG~~gl~rG~~~ 65 (70)
...-++.|+..||||.+.
T Consensus 27 ~~~~~e~gIk~lyrGvsk 44 (86)
T PF12594_consen 27 QAMHKEFGIKSLYRGVSK 44 (86)
T ss_pred HHHHHhcCCeEEEEeccc
Confidence 556677899999999873
No 62
>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]
Probab=44.05 E-value=16 Score=20.80 Aligned_cols=20 Identities=15% Similarity=0.376 Sum_probs=16.8
Q ss_pred HHHHHHHHHhchhccccccc
Q psy16296 45 DCMLQTIKHEGFMALYKGFI 64 (70)
Q Consensus 45 ~~~~~i~~~eG~~gl~rG~~ 64 (70)
..+.++++.+|+.|.|+|-.
T Consensus 35 ~~~e~~~~~~gW~gsW~g~V 54 (163)
T COG4297 35 AQVEDHFKANGWFGSWRGGV 54 (163)
T ss_pred HHHHHHHhhcCCcccccccc
Confidence 34788999999999999854
No 63
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C.
Probab=30.91 E-value=22 Score=15.56 Aligned_cols=18 Identities=17% Similarity=0.375 Sum_probs=4.1
Q ss_pred cHHHHHHHHHHHhchhcc
Q psy16296 42 GSIDCMLQTIKHEGFMAL 59 (70)
Q Consensus 42 ~~~~~~~~i~~~eG~~gl 59 (70)
+.+.-+.+-|+++|+.||
T Consensus 32 ~Tv~~w~kr~~~~G~~gL 49 (50)
T PF13384_consen 32 STVYRWIKRYREEGLEGL 49 (50)
T ss_dssp HHHHHHHT----------
T ss_pred HHHHHHHHHccccccccc
Confidence 344455666777888775
No 64
>PHA01749 coat protein
Probab=27.01 E-value=54 Score=17.63 Aligned_cols=32 Identities=16% Similarity=0.218 Sum_probs=22.0
Q ss_pred cccCcHHHHHHHHHHHhch----hccccccchhhhc
Q psy16296 38 RVYKGSIDCMLQTIKHEGF----MALYKGFIPTWFI 69 (70)
Q Consensus 38 ~~~~~~~~~~~~i~~~eG~----~gl~rG~~~~~~r 69 (70)
+++.+.-+-+..++.+.|+ +..|.|+...+.|
T Consensus 50 pkftsvne~vsavltqygvtgpnraiyqgfglkvar 85 (134)
T PHA01749 50 PKFTSVNENVSAVLTQYGITGPNRAIYQGFGLKVAR 85 (134)
T ss_pred ccchhHHHHHHHHHHHhcCCCccHHHHhhhhHHHHH
Confidence 4566666777777777776 5678888766554
No 65
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=26.40 E-value=1.3e+02 Score=19.40 Aligned_cols=43 Identities=12% Similarity=0.094 Sum_probs=27.9
Q ss_pred hHhhcccchhccccccccCcHHHHHHHHHHHhchhccccccchhh
Q psy16296 23 VALPMNQKHLKNQHVRVYKGSIDCMLQTIKHEGFMALYKGFIPTW 67 (70)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~gl~rG~~~~~ 67 (70)
.+..+..|.+..+. +-...+..+..+++.+|+.++-+-+.|-+
T Consensus 271 ~tqIlgAP~~mie~--qa~eaL~tmasLme~~GI~gm~~aLnPea 313 (342)
T PRK00961 271 VTQILGAPADFAQM--MADEALTQITALMREEGIDNMEEALDPGA 313 (342)
T ss_pred HHHHhcCcHHHHHH--HHHHHHHHHHHHHHHhhHhHHHHhcCHHH
Confidence 45556666654322 12345667788889999999888777644
No 66
>PF08887 GAD-like: GAD-like domain; InterPro: IPR014983 This domain is functionally uncharacterised, but it appears to be distantly related to the GAD domain IPR004115 from INTERPRO.
Probab=26.06 E-value=60 Score=17.38 Aligned_cols=26 Identities=35% Similarity=0.482 Sum_probs=20.4
Q ss_pred ccCcH-HHHHHHHHHHhchhccccccc
Q psy16296 39 VYKGS-IDCMLQTIKHEGFMALYKGFI 64 (70)
Q Consensus 39 ~~~~~-~~~~~~i~~~eG~~gl~rG~~ 64 (70)
+|++. -+.+-..+++.|+.++..|+.
T Consensus 27 kyk~~lP~~Ll~~W~~~G~g~~~dG~f 53 (109)
T PF08887_consen 27 KYKGKLPDELLEYWKEYGFGGYGDGLF 53 (109)
T ss_pred HhcCCCcHHHHHHHHHcCCchhcCcEE
Confidence 35554 477899999999998888864
No 67
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=25.60 E-value=1.4e+02 Score=19.34 Aligned_cols=43 Identities=9% Similarity=0.075 Sum_probs=27.9
Q ss_pred hHhhcccchhccccccccCcHHHHHHHHHHHhchhccccccchhh
Q psy16296 23 VALPMNQKHLKNQHVRVYKGSIDCMLQTIKHEGFMALYKGFIPTW 67 (70)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~gl~rG~~~~~ 67 (70)
.+..+..|.+..+. +-...+..+..+++.+|+.++-+-+.|-+
T Consensus 269 ~t~IlgAP~~miq~--qa~eaL~tmasLme~~GI~gm~~aLnPea 311 (340)
T TIGR01723 269 VTKILGAPADFAQM--MADEALTQIHNLMEEKGIDKMEEALDPAA 311 (340)
T ss_pred HHHHhcCcHHHHHH--HHHHHHHHHHHHHHHhhHHHHHHhcCHHH
Confidence 45555666654322 12345667788889999999888777644
No 68
>PF13518 HTH_28: Helix-turn-helix domain
Probab=25.48 E-value=72 Score=13.71 Aligned_cols=19 Identities=11% Similarity=0.225 Sum_probs=13.7
Q ss_pred cHHHHHHHHHHHhchhccc
Q psy16296 42 GSIDCMLQTIKHEGFMALY 60 (70)
Q Consensus 42 ~~~~~~~~i~~~eG~~gl~ 60 (70)
+.+.-+.+.++++|+.+|.
T Consensus 27 ~tv~~w~~~y~~~G~~~l~ 45 (52)
T PF13518_consen 27 STVYRWIKRYREGGIEGLK 45 (52)
T ss_pred hHHHHHHHHHHhcCHHHhc
Confidence 4556677778888887765
No 69
>smart00263 LYZ1 Alpha-lactalbumin / lysozyme C.
Probab=24.82 E-value=63 Score=17.88 Aligned_cols=17 Identities=18% Similarity=0.513 Sum_probs=13.6
Q ss_pred cHHHHHHHHHHHhchhc
Q psy16296 42 GSIDCMLQTIKHEGFMA 58 (70)
Q Consensus 42 ~~~~~~~~i~~~eG~~g 58 (70)
..+.|.++|++++|+..
T Consensus 90 ddv~CAk~I~~~~G~~a 106 (127)
T smart00263 90 DDVKCAKKIVSDQGIDA 106 (127)
T ss_pred HHHHHHHHHHHHcCchH
Confidence 34789999999988743
No 70
>PF09196 DUF1953: Domain of unknown function (DUF1953); InterPro: IPR015279 This domain is found in the Archaeal protein maltooligosyl trehalose synthase produced by Sulfolobus spp. Its function has not, as yet, been defined. ; PDB: 3HJE_A 1IV8_A.
Probab=21.89 E-value=27 Score=16.69 Aligned_cols=11 Identities=18% Similarity=0.241 Sum_probs=7.9
Q ss_pred Hhchhcccccc
Q psy16296 53 HEGFMALYKGF 63 (70)
Q Consensus 53 ~eG~~gl~rG~ 63 (70)
++|+.||.||-
T Consensus 8 ~~glcgf~r~~ 18 (66)
T PF09196_consen 8 EEGLCGFIRFN 18 (66)
T ss_dssp -TTEEEEEETT
T ss_pred hhcceeEEecC
Confidence 57888888874
No 71
>PF05464 Phi-29_GP4: Phi-29-like late genes activator (early protein GP4); InterPro: IPR008771 This family consists of phi-29-like late genes activator (or early protein GP4). This protein is thought to be a positive regulator of late transcription and may function as a sigma-like component of the host RNA polymerase [].; GO: 0003899 DNA-directed RNA polymerase activity, 0016987 sigma factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2FIP_B 2FIO_A.
Probab=21.89 E-value=52 Score=17.78 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=12.2
Q ss_pred HHHHHHHHhchhccccccchhh
Q psy16296 46 CMLQTIKHEGFMALYKGFIPTW 67 (70)
Q Consensus 46 ~~~~i~~~eG~~gl~rG~~~~~ 67 (70)
|+..-+.+.|+..++||-..++
T Consensus 69 ~fY~~VEKRGF~~~~KGd~~TW 90 (125)
T PF05464_consen 69 TFYSQVEKRGFHAWLKGDNMTW 90 (125)
T ss_dssp HHHHHH-TS---EEETTEEE-H
T ss_pred HHHHHHhhhhhhheecCCcchH
Confidence 3445567789999999987665
No 72
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=20.91 E-value=1.8e+02 Score=19.02 Aligned_cols=43 Identities=12% Similarity=0.096 Sum_probs=27.5
Q ss_pred hHhhcccchhccccccccCcHHHHHHHHHHHhchhccccccchhh
Q psy16296 23 VALPMNQKHLKNQHVRVYKGSIDCMLQTIKHEGFMALYKGFIPTW 67 (70)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~gl~rG~~~~~ 67 (70)
.+..+..|.+.+.. +-...+..+..+++.+|+.++-+-+.|-+
T Consensus 222 ~t~i~~ap~~~~~~--~~~~~l~~~a~l~~~~Gi~~~~~~l~p~~ 264 (341)
T TIGR01724 222 GTQIINAPKEMIEK--QILMTLQTMASLVETSGVEGMAKAINPEL 264 (341)
T ss_pred HHHHhcCcHHHHHH--HHHHHHHHHHHHHHHhhHHHHHHhcCHHH
Confidence 44555666654322 12344667788889999999888776644
No 73
>PF01809 Haemolytic: Haemolytic domain; InterPro: IPR002696 This is a family of short (70 amino acid) hypothetical proteins from various bacteria. They contain three conserved cysteine residues. Q44066 from SWISSPROT from Aeromonas hydrophila has been found to have hemolytic activity.
Probab=20.60 E-value=72 Score=15.56 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=13.0
Q ss_pred cHHHHHHHHHHHhchhccccccchhh
Q psy16296 42 GSIDCMLQTIKHEGFMALYKGFIPTW 67 (70)
Q Consensus 42 ~~~~~~~~i~~~eG~~gl~rG~~~~~ 67 (70)
+-++-..+.+++.| +++|+..++
T Consensus 29 SCS~Y~~~ai~~~G---~~~G~~l~~ 51 (68)
T PF01809_consen 29 SCSEYAKQAIRKYG---LFKGLWLTA 51 (68)
T ss_pred CHHHHHHHHHHHhC---hHHHHHHHH
Confidence 44555677777777 444544433
No 74
>PF08300 HCV_NS5a_1a: Hepatitis C virus non-structural 5a zinc finger domain; InterPro: IPR013192 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in the non-structural 5a protein (NS5a) in Hepatitis C virus. The molecular function of NS5a is uncertain, but it is phosphorylated when expressed in mammalian cells. It is thought to interact with the dsRNA dependent (interferon inducible) kinase PKR, P19525 from SWISSPROT [, ]. This region corresponds to the N-terminal zinc binding domain (1a) []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003968 RNA-directed RNA polymerase activity, 0004252 serine-type endopeptidase activity, 0008270 zinc ion binding, 0017111 nucleoside-triphosphatase activity, 0006355 regulation of transcription, DNA-dependent, 0006915 apoptosis, 0030683 evasion by virus of host immune response, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane; PDB: 1ZH1_B 3FQM_A 3FQQ_B.
Probab=20.28 E-value=33 Score=16.62 Aligned_cols=12 Identities=17% Similarity=0.517 Sum_probs=5.4
Q ss_pred Hhchhccccccc
Q psy16296 53 HEGFMALYKGFI 64 (70)
Q Consensus 53 ~eG~~gl~rG~~ 64 (70)
++|++|-|+|=.
T Consensus 7 qrGy~G~W~GdG 18 (62)
T PF08300_consen 7 QRGYKGVWRGDG 18 (62)
T ss_dssp ---B-SEEES-E
T ss_pred CCCCCcEEcCCC
Confidence 468888888744
Done!