Query psy16296
Match_columns 70
No_of_seqs 128 out of 1219
Neff 9.4
Searched_HMMs 29240
Date Fri Aug 16 17:44:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16296.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16296hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1okc_A ADP, ATP carrier protei 99.2 4.9E-11 1.7E-15 71.3 5.0 32 38-69 248-279 (297)
2 2lck_A Mitochondrial uncouplin 99.1 3.9E-11 1.3E-15 72.0 4.0 60 8-69 206-267 (303)
3 1okc_A ADP, ATP carrier protei 99.0 3.4E-10 1.2E-14 67.6 4.3 31 39-69 49-79 (297)
4 2lck_A Mitochondrial uncouplin 99.0 2E-10 6.8E-15 68.9 2.5 49 21-69 115-173 (303)
5 2acm_A Mucin-1; auto-catalytic 72.0 0.59 2E-05 21.9 -0.4 20 41-60 40-59 (66)
6 2l5r_A Antimicrobial peptide a 34.2 8.9 0.0003 14.3 0.1 19 48-67 3-21 (26)
7 2b0j_A 5,10-methenyltetrahydro 30.8 68 0.0023 20.0 3.5 44 23-68 271-314 (358)
8 3f2e_A SIRV coat protein; four 30.3 15 0.0005 18.1 0.5 25 42-66 10-38 (100)
9 1yro_A Alpha-lactalbumin; Arg2 28.3 49 0.0017 17.4 2.3 17 42-58 87-103 (123)
10 2fbd_A Lysozyme 1; digestive l 27.8 52 0.0018 17.2 2.4 17 42-58 88-104 (122)
11 1hml_A Alpha-lactalbumin; calc 26.1 55 0.0019 17.7 2.3 17 42-58 106-122 (142)
12 1iiz_A Lysozyme; hydrolase; 2. 25.6 53 0.0018 17.2 2.2 16 42-57 86-101 (120)
13 1b9o_A Protein (alpha-lactalbu 24.5 49 0.0017 17.4 1.9 16 42-57 87-102 (123)
14 2z2f_A Lysozyme C-2; stomach l 21.0 83 0.0028 16.6 2.4 17 42-58 91-107 (129)
No 1
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=99.15 E-value=4.9e-11 Score=71.31 Aligned_cols=32 Identities=31% Similarity=0.554 Sum_probs=30.1
Q ss_pred cccCcHHHHHHHHHHHhchhccccccchhhhc
Q psy16296 38 RVYKGSIDCMLQTIKHEGFMALYKGFIPTWFI 69 (70)
Q Consensus 38 ~~~~~~~~~~~~i~~~eG~~gl~rG~~~~~~r 69 (70)
..|++.++|+++|+++||++|||||+.|+++|
T Consensus 248 ~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r 279 (297)
T 1okc_A 248 IMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLR 279 (297)
T ss_dssp CSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHcCcCeEecchHHHHHh
Confidence 36899999999999999999999999999987
No 2
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=99.13 E-value=3.9e-11 Score=71.99 Aligned_cols=60 Identities=25% Similarity=0.551 Sum_probs=41.8
Q ss_pred HHHHHhhhHHHHHHHhHhhcccchhcccc--ccccCcHHHHHHHHHHHhchhccccccchhhhc
Q psy16296 8 LYARFSYGYELLIFLVALPMNQKHLKNQH--VRVYKGSIDCMLQTIKHEGFMALYKGFIPTWFI 69 (70)
Q Consensus 8 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~eG~~gl~rG~~~~~~r 69 (70)
+.+++.+|+.. ++++.|++..+...+. ...|++.++|+++|+++||++|||||+.|+++|
T Consensus 206 ~~~g~~ag~~~--~~~~~P~dvvktrlq~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r 267 (303)
T 2lck_A 206 FTSAFGAGFCT--TVIASPVDVVKTRYMNSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLR 267 (303)
T ss_dssp HHHHHHHHHHH--HHHHHHHHHHHHHHTTCCSSSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHH
T ss_pred HHHHHHHHHHH--HHHcCHHHHHHHHHHhccccccCCHHHHHHHHHHHcChHHhhccHHHHHHH
Confidence 34444444443 4455544444332222 235899999999999999999999999999987
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=99.00 E-value=3.4e-10 Score=67.65 Aligned_cols=31 Identities=32% Similarity=0.762 Sum_probs=29.3
Q ss_pred ccCcHHHHHHHHHHHhchhccccccchhhhc
Q psy16296 39 VYKGSIDCMLQTIKHEGFMALYKGFIPTWFI 69 (70)
Q Consensus 39 ~~~~~~~~~~~i~~~eG~~gl~rG~~~~~~r 69 (70)
.|++.++++++++++||++|||||+.|+++|
T Consensus 49 ~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~ 79 (297)
T 1okc_A 49 QYKGIIDCVVRIPKEQGFLSFWRGNLANVIR 79 (297)
T ss_dssp SCCSHHHHHHHHHHHHCGGGGGTTTHHHHHH
T ss_pred ccccHHHHHHHHHhccchhheecccHHHHHH
Confidence 6899999999999999999999999999876
No 4
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=98.97 E-value=2e-10 Score=68.94 Aligned_cols=49 Identities=20% Similarity=0.244 Sum_probs=38.3
Q ss_pred HHhHhhcccchhcccc----------ccccCcHHHHHHHHHHHhchhccccccchhhhc
Q psy16296 21 FLVALPMNQKHLKNQH----------VRVYKGSIDCMLQTIKHEGFMALYKGFIPTWFI 69 (70)
Q Consensus 21 ~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~i~~~eG~~gl~rG~~~~~~r 69 (70)
+++...+.+|.|.+|+ ...|++.++++++|+++||++|||||+.|+++|
T Consensus 115 g~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~ 173 (303)
T 2lck_A 115 GALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVAR 173 (303)
T ss_dssp HHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHH
Confidence 4555555566654431 236899999999999999999999999999886
No 5
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=72.00 E-value=0.59 Score=21.88 Aligned_cols=20 Identities=30% Similarity=0.511 Sum_probs=17.5
Q ss_pred CcHHHHHHHHHHHhchhccc
Q psy16296 41 KGSIDCMLQTIKHEGFMALY 60 (70)
Q Consensus 41 ~~~~~~~~~i~~~eG~~gl~ 60 (70)
+++.+.+.+||+++++.|++
T Consensus 40 r~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 40 RDISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHHccCCeeeee
Confidence 57888899999999998886
No 6
>2l5r_A Antimicrobial peptide alyteserin-1C; alpha helix, antimicrobial protein; NMR {Alytes obstetricans}
Probab=34.17 E-value=8.9 Score=14.28 Aligned_cols=19 Identities=26% Similarity=0.347 Sum_probs=10.1
Q ss_pred HHHHHHhchhccccccchhh
Q psy16296 48 LQTIKHEGFMALYKGFIPTW 67 (70)
Q Consensus 48 ~~i~~~eG~~gl~rG~~~~~ 67 (70)
++|++ .|+-++.+|+.+.+
T Consensus 3 keifk-aglgslvkgiaahv 21 (26)
T 2l5r_A 3 KEIFK-AGLGSLVKGIAAHV 21 (26)
T ss_dssp HHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHH-HhHHHHHHHHHHHH
Confidence 34443 35666666665543
No 7
>2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold, helix bundle, oxidoreductase; 1.75A {Methanocaldococcus jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A* 3daf_A* 3dag_A* 3f46_A* 3h65_A*
Probab=30.79 E-value=68 Score=19.96 Aligned_cols=44 Identities=11% Similarity=0.122 Sum_probs=27.8
Q ss_pred hHhhcccchhccccccccCcHHHHHHHHHHHhchhccccccchhhh
Q psy16296 23 VALPMNQKHLKNQHVRVYKGSIDCMLQTIKHEGFMALYKGFIPTWF 68 (70)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~gl~rG~~~~~~ 68 (70)
.+..+..|.+..+. +-...+..+..+++++|+.|+-+-+.|.++
T Consensus 271 vtkIlgAP~~mie~--q~~esL~tiasLve~~GI~gm~k~LnP~aL 314 (358)
T 2b0j_A 271 VTKILGAPADFAQM--MADEALTQIHNLMKEKGIANMEEALDPAAL 314 (358)
T ss_dssp HHTTSCCCHHHHHH--HHHHHHHHHHHHHHHHCGGGHHHHSCGGGG
T ss_pred HHHHhcCcHHHHHH--HHHHHHHHHHHHHHHhhHHHHHHhcCHHHH
Confidence 44455555554321 123456677888999999999887776543
No 8
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=30.34 E-value=15 Score=18.11 Aligned_cols=25 Identities=20% Similarity=0.361 Sum_probs=10.4
Q ss_pred cHHHHHHHHHHHhch----hccccccchh
Q psy16296 42 GSIDCMLQTIKHEGF----MALYKGFIPT 66 (70)
Q Consensus 42 ~~~~~~~~i~~~eG~----~gl~rG~~~~ 66 (70)
+.-+-+..++.+.|+ +..|.|+...
T Consensus 10 svne~vsavltqygvtgpnraiyqgfglk 38 (100)
T 3f2e_A 10 AVAEQVSAVLSQYGITGPNRAIYQGFGLK 38 (100)
T ss_dssp HHHHHHHHHHHHHTCCGGGHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCCccHHHHhhhhHH
Confidence 333334444444443 3344444433
No 9
>1yro_A Alpha-lactalbumin; Arg228Lys mutation, UDP-GAL complex, transferase activator/transferase complex; HET: GDU UDP MES PG4; 1.90A {Mus musculus} SCOP: d.2.1.2 PDB: 1nhe_A* 1nkh_A* 1nmm_A* 1nqi_A* 1nwg_A* 1o23_A* 1oqm_A* 1pzy_A* 1nf5_A* 2fyc_A* 2fyd_A*
Probab=28.29 E-value=49 Score=17.42 Aligned_cols=17 Identities=18% Similarity=0.348 Sum_probs=13.8
Q ss_pred cHHHHHHHHHHHhchhc
Q psy16296 42 GSIDCMLQTIKHEGFMA 58 (70)
Q Consensus 42 ~~~~~~~~i~~~eG~~g 58 (70)
....|.++|++++|+..
T Consensus 87 ~~i~CAk~I~~~~G~~a 103 (123)
T 1yro_A 87 DDIACAKKILAIKGIDY 103 (123)
T ss_dssp HHHHHHHHHHHHTCGGG
T ss_pred HHHHHHHHHHHhcCcch
Confidence 35889999999988753
No 10
>2fbd_A Lysozyme 1; digestive lysozime, hydrolase; HET: PEG; 1.90A {Musca domestica} PDB: 2h5z_A* 3cb7_A
Probab=27.85 E-value=52 Score=17.25 Aligned_cols=17 Identities=24% Similarity=0.552 Sum_probs=13.8
Q ss_pred cHHHHHHHHHHHhchhc
Q psy16296 42 GSIDCMLQTIKHEGFMA 58 (70)
Q Consensus 42 ~~~~~~~~i~~~eG~~g 58 (70)
....|.++|++++|+..
T Consensus 88 ~~i~CAk~I~~~~G~~a 104 (122)
T 2fbd_A 88 NSVTCARKIKSQQGWTA 104 (122)
T ss_dssp HHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHhcCCcc
Confidence 35889999999998744
No 11
>1hml_A Alpha-lactalbumin; calcium-binding protein; 1.70A {Homo sapiens} SCOP: d.2.1.2
Probab=26.13 E-value=55 Score=17.69 Aligned_cols=17 Identities=18% Similarity=0.313 Sum_probs=13.8
Q ss_pred cHHHHHHHHHHHhchhc
Q psy16296 42 GSIDCMLQTIKHEGFMA 58 (70)
Q Consensus 42 ~~~~~~~~i~~~eG~~g 58 (70)
....|.++|++++|+..
T Consensus 106 ~~i~CAk~I~~~~G~~a 122 (142)
T 1hml_A 106 DDIMCAKKILDIKGIDY 122 (142)
T ss_dssp HHHHHHHHHHHHTCGGG
T ss_pred HHHHHHHHHHHhcCcch
Confidence 35889999999988753
No 12
>1iiz_A Lysozyme; hydrolase; 2.40A {Antheraea mylitta} SCOP: d.2.1.2 PDB: 1gd6_A
Probab=25.60 E-value=53 Score=17.18 Aligned_cols=16 Identities=19% Similarity=0.241 Sum_probs=13.3
Q ss_pred cHHHHHHHHHHHhchh
Q psy16296 42 GSIDCMLQTIKHEGFM 57 (70)
Q Consensus 42 ~~~~~~~~i~~~eG~~ 57 (70)
....|.++|++++|+.
T Consensus 86 ~~v~CAk~I~~~~G~~ 101 (120)
T 1iiz_A 86 VASTCAKKIYKRTKFD 101 (120)
T ss_dssp HHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhcCcc
Confidence 3578999999998874
No 13
>1b9o_A Protein (alpha-lactalbumin); calcium-binding protein, high resolution; 1.15A {Homo sapiens} SCOP: d.2.1.2 PDB: 1a4v_A 1alc_A 1hmk_A 1hfy_A 1f6r_A 1f6s_A 2g4n_A 1fkq_A 1fkv_A 1hfz_A 1hfx_A
Probab=24.53 E-value=49 Score=17.40 Aligned_cols=16 Identities=19% Similarity=0.378 Sum_probs=13.3
Q ss_pred cHHHHHHHHHHHhchh
Q psy16296 42 GSIDCMLQTIKHEGFM 57 (70)
Q Consensus 42 ~~~~~~~~i~~~eG~~ 57 (70)
....|.++|++++|+.
T Consensus 87 ~~i~CAk~I~~~~G~~ 102 (123)
T 1b9o_A 87 DDIMCAKKILDIKGID 102 (123)
T ss_dssp HHHHHHHHHHHHTTTH
T ss_pred HHHHHHHHHHHhcCcc
Confidence 3588999999998874
No 14
>2z2f_A Lysozyme C-2; stomach lysozyme, 1,4-beta-N-acetylmuramidase C, bacteriolytic enzyme, hydrolase; 1.50A {Bos taurus}
Probab=21.04 E-value=83 Score=16.61 Aligned_cols=17 Identities=18% Similarity=0.526 Sum_probs=13.7
Q ss_pred cHHHHHHHHHHHhchhc
Q psy16296 42 GSIDCMLQTIKHEGFMA 58 (70)
Q Consensus 42 ~~~~~~~~i~~~eG~~g 58 (70)
....|.++|++++|+..
T Consensus 91 ~~i~CAk~I~~~~G~~a 107 (129)
T 2z2f_A 91 KAVACAKHIVSEQGITA 107 (129)
T ss_dssp HHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHhcCcch
Confidence 35789999999988743
Done!