RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy16296
         (70 letters)



>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton
           translocator, mitochondrial carrier transport protein,
           structural genomics; NMR {Mus musculus}
          Length = 303

 Score = 60.4 bits (147), Expect = 5e-13
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query: 34  NQHVRVYKGSIDCMLQTIKHEGFMALYKGFIPTWF 68
           N  +  Y  +  C L  ++ EG  A YKGF+P++ 
Sbjct: 232 NSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFL 266



 Score = 40.0 bits (94), Expect = 1e-05
 Identities = 9/40 (22%), Positives = 18/40 (45%)

Query: 29 QKHLKNQHVRVYKGSIDCMLQTIKHEGFMALYKGFIPTWF 68
          Q  ++      Y+G +  +L  ++ EG  +LY G +    
Sbjct: 36 QGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQ 75



 Score = 36.9 bits (86), Expect = 1e-04
 Identities = 8/29 (27%), Positives = 14/29 (48%)

Query: 38  RVYKGSIDCMLQTIKHEGFMALYKGFIPT 66
           R Y+ +++      + EG   L+KG  P 
Sbjct: 142 RRYQSTVEAYKTIAREEGIRGLWKGTSPN 170


>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial
           transporter, nucleotide translocation, membrane protein,
           transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP:
           f.42.1.1 PDB: 2c3e_A*
          Length = 297

 Score = 46.5 bits (111), Expect = 5e-08
 Identities = 10/33 (30%), Positives = 15/33 (45%)

Query: 36  HVRVYKGSIDCMLQTIKHEGFMALYKGFIPTWF 68
              +Y G++DC  +  K EG  A +KG      
Sbjct: 246 ADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVL 278



 Score = 44.6 bits (106), Expect = 2e-07
 Identities = 10/34 (29%), Positives = 17/34 (50%)

Query: 33  KNQHVRVYKGSIDCMLQTIKHEGFMALYKGFIPT 66
           K    R + G  +C+ +  K +G   LY+GF  +
Sbjct: 146 KGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVS 179



 Score = 36.5 bits (85), Expect = 2e-04
 Identities = 10/23 (43%), Positives = 18/23 (78%)

Query: 40 YKGSIDCMLQTIKHEGFMALYKG 62
          YKG IDC+++  K +GF++ ++G
Sbjct: 50 YKGIIDCVVRIPKEQGFLSFWRG 72


>1a0p_A Site-specific recombinase XERD; DNA binding, DNA recombination;
           2.50A {Escherichia coli} SCOP: a.60.9.1 d.163.1.1
          Length = 290

 Score = 25.9 bits (58), Expect = 0.94
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 14/47 (29%)

Query: 1   MFELGRELYA---RFSYGYELLIFLVALPMNQKHLKNQHVRVY-KGS 43
           M E+   LYA   R S   EL    V L M+   L+   VRV  KG+
Sbjct: 136 MLEV---LYATGLRVS---EL----VGLTMSDISLRQGVVRVIGKGN 172


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 24.2 bits (52), Expect = 4.7
 Identities = 8/22 (36%), Positives = 10/22 (45%), Gaps = 1/22 (4%)

Query: 3   ELGRELYARFSYGYELLIFLVA 24
           EL R+LY  +      LI   A
Sbjct: 172 EL-RDLYQTYHVLVGDLIKFSA 192



 Score = 23.9 bits (51), Expect = 6.3
 Identities = 16/76 (21%), Positives = 26/76 (34%), Gaps = 32/76 (42%)

Query: 1    MFELGRELYARF----------------SYGYELL-IFLVALPMNQKHLKNQHVRVYKGS 43
            M   G +LY                   +YG+ +L I +     N  +L   H    KG 
Sbjct: 1631 M---GMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVIN----NPVNLT-IHFGGEKG- 1681

Query: 44   IDCMLQTIKHEGFMAL 59
                 + I+ E + A+
Sbjct: 1682 -----KRIR-ENYSAM 1691


>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA
           recognition motif, G-tract, G-quadruplex, alternative,
           splicing, RNA binding protein; NMR {Homo sapiens} PDB:
           2kfy_A
          Length = 136

 Score = 23.8 bits (51), Expect = 5.2
 Identities = 8/32 (25%), Positives = 18/32 (56%)

Query: 24  ALPMNQKHLKNQHVRVYKGSIDCMLQTIKHEG 55
           AL  +++ + ++++ V+K     M   +KH G
Sbjct: 104 ALKKDRESMGHRYIEVFKSHRTEMDWVLKHSG 135


>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann
           fold, crystallography, X-RAY, P. horikoshii,
           aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus
           horikoshii}
          Length = 392

 Score = 23.1 bits (50), Expect = 9.5
 Identities = 4/26 (15%), Positives = 8/26 (30%)

Query: 1   MFELGRELYARFSYGYELLIFLVALP 26
            + L R+      Y     +    +P
Sbjct: 220 YWRLQRDFAESLGYYKTAALHSKFVP 245


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.332    0.147    0.465 

Gapped
Lambda     K      H
   0.267   0.0681    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,062,530
Number of extensions: 46355
Number of successful extensions: 124
Number of sequences better than 10.0: 1
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 11
Length of query: 70
Length of database: 6,701,793
Length adjustment: 40
Effective length of query: 30
Effective length of database: 5,584,953
Effective search space: 167548590
Effective search space used: 167548590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 51 (23.5 bits)