Query psy163
Match_columns 97
No_of_seqs 112 out of 1127
Neff 7.7
Searched_HMMs 46136
Date Fri Aug 16 17:48:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy163.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/163hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00014 myosin-A; Provisional 100.0 3.3E-38 7.1E-43 251.9 6.6 92 4-95 460-551 (821)
2 cd01383 MYSc_type_VIII Myosin 100.0 5.3E-38 1.1E-42 247.2 6.9 92 4-95 363-454 (677)
3 cd01387 MYSc_type_XV Myosin mo 100.0 6.7E-38 1.5E-42 246.6 7.1 92 4-95 359-450 (677)
4 cd01381 MYSc_type_VII Myosin m 100.0 8.3E-38 1.8E-42 246.0 7.6 92 4-95 360-451 (671)
5 COG5022 Myosin heavy chain [Cy 100.0 3.4E-38 7.3E-43 257.2 5.3 92 4-95 426-518 (1463)
6 cd01384 MYSc_type_XI Myosin mo 100.0 1.1E-37 2.4E-42 245.3 6.9 92 4-95 365-456 (674)
7 cd01379 MYSc_type_III Myosin m 100.0 1.1E-37 2.5E-42 244.6 6.7 92 4-95 371-462 (653)
8 cd01382 MYSc_type_VI Myosin mo 100.0 1.2E-37 2.6E-42 246.4 6.7 92 4-95 395-486 (717)
9 cd01385 MYSc_type_IX Myosin mo 100.0 1.3E-37 2.9E-42 245.4 6.7 92 4-95 374-466 (692)
10 cd01378 MYSc_type_I Myosin mot 100.0 2.2E-37 4.8E-42 243.7 6.8 93 3-95 363-457 (674)
11 cd01377 MYSc_type_II Myosin mo 100.0 5.4E-37 1.2E-41 242.1 7.1 92 4-95 372-464 (693)
12 cd01380 MYSc_type_V Myosin mot 100.0 6.9E-37 1.5E-41 241.4 7.0 92 3-95 365-456 (691)
13 smart00242 MYSc Myosin. Large 100.0 3.6E-36 7.7E-41 237.0 6.7 92 4-95 367-458 (677)
14 cd00124 MYSc Myosin motor doma 100.0 1.4E-35 3.1E-40 233.7 6.4 93 3-95 359-451 (679)
15 cd01386 MYSc_type_XVIII Myosin 100.0 2.7E-34 5.8E-39 228.5 6.7 91 5-95 372-483 (767)
16 PF00063 Myosin_head: Myosin h 100.0 2.7E-34 5.8E-39 226.4 5.2 91 4-94 362-453 (689)
17 KOG0161|consensus 100.0 7.8E-34 1.7E-38 238.2 4.3 91 4-95 446-537 (1930)
18 KOG0164|consensus 100.0 4.4E-33 9.4E-38 217.0 4.1 90 5-94 374-463 (1001)
19 KOG0163|consensus 100.0 9.1E-32 2E-36 210.8 5.5 92 4-95 449-540 (1259)
20 KOG0162|consensus 100.0 5.9E-30 1.3E-34 200.0 3.5 88 4-91 381-469 (1106)
21 KOG0160|consensus 100.0 3.2E-29 7E-34 199.6 5.6 90 5-95 367-456 (862)
22 KOG4229|consensus 99.9 4.1E-27 8.8E-32 191.0 3.6 91 5-95 426-516 (1062)
23 COG5019 CDC3 Septin family pro 78.1 2 4.3E-05 32.8 2.4 38 3-40 79-117 (373)
24 KOG2655|consensus 74.4 3.6 7.9E-05 31.3 3.0 39 3-41 76-115 (366)
25 cd01850 CDC_Septin CDC/Septin. 67.4 8 0.00017 27.9 3.4 35 6-40 63-98 (276)
26 KOG1547|consensus 56.6 23 0.00049 26.2 4.0 55 4-59 102-158 (336)
27 PF00735 Septin: Septin; Inte 56.3 16 0.00034 26.5 3.3 37 4-40 61-98 (281)
28 PF04548 AIG1: AIG1 family; I 42.6 14 0.0003 25.3 1.1 12 6-17 49-60 (212)
29 cd01852 AIG1 AIG1 (avrRpt2-ind 41.0 16 0.00035 24.4 1.3 15 6-20 49-63 (196)
30 PF03193 DUF258: Protein of un 39.0 13 0.00028 25.0 0.5 16 7-22 88-103 (161)
31 COG1162 Predicted GTPases [Gen 34.8 33 0.00072 25.5 2.2 14 9-22 219-232 (301)
32 PF00009 GTP_EFTU: Elongation 32.0 16 0.00034 24.2 0.1 16 4-19 68-83 (188)
33 PF01926 MMR_HSR1: 50S ribosom 31.2 32 0.00069 20.7 1.4 13 7-19 48-60 (116)
34 PF00350 Dynamin_N: Dynamin fa 29.7 20 0.00044 22.9 0.3 13 6-18 101-113 (168)
35 TIGR00157 ribosome small subun 28.5 48 0.001 23.4 2.0 16 9-24 174-189 (245)
36 cd01894 EngA1 EngA1 subfamily. 27.7 40 0.00087 20.7 1.4 15 6-20 45-59 (157)
37 COG1400 SEC65 Signal recogniti 27.0 26 0.00057 21.6 0.4 27 68-96 35-61 (93)
38 COG2153 ElaA Predicted acyltra 25.1 35 0.00077 22.9 0.8 28 31-58 117-144 (155)
39 cd01879 FeoB Ferrous iron tran 23.8 52 0.0011 20.3 1.4 14 7-20 44-57 (158)
40 cd01853 Toc34_like Toc34-like 22.0 50 0.0011 23.5 1.2 14 6-19 79-92 (249)
41 cd01363 Motor_domain Myosin an 20.9 63 0.0014 21.6 1.4 20 5-24 106-125 (186)
No 1
>PTZ00014 myosin-A; Provisional
Probab=100.00 E-value=3.3e-38 Score=251.93 Aligned_cols=92 Identities=29% Similarity=0.343 Sum_probs=89.3
Q ss_pred ccceeeeeccCCccCCCcCchhhhHhhhhhhhhhhhHhhhhhhhhHhhhhccCceecccccCCchhHHHhhhcCCCcccc
Q psy163 4 VHHEERTMDVPSLTPAYVRLFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 83 (97)
Q Consensus 4 ~~~~i~ilD~~GFe~f~~n~feql~iN~~nE~l~~~~~~~~f~~~~~ey~~Egi~~~~i~~~dn~~~ldli~~~p~Gil~ 83 (97)
..++||||||||||+|+.||||||||||||||||++|++++|+.+|++|.+|||.|..++|.||++|+|||++||.|||+
T Consensus 460 ~~~~IGiLDI~GFE~f~~NSfEQLcINy~NEkLQq~F~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~idLie~k~~GIl~ 539 (821)
T PTZ00014 460 FKVFIGMLDIFGFEVFKNNSLEQLFINITNEMLQKNFVDIVFERESKLYKDEGISTEELEYTSNESVIDLLCGKGKSVLS 539 (821)
T ss_pred cCceEEEEecccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCcHHHHHHHhcCCccHHH
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhccccc
Q psy163 84 VLDDQAKFHKLW 95 (97)
Q Consensus 84 lLDeec~~Pk~~ 95 (97)
+|||||++|+++
T Consensus 540 lLDEec~~p~~t 551 (821)
T PTZ00014 540 ILEDQCLAPGGT 551 (821)
T ss_pred HHHHHhCCCCCC
Confidence 999999999975
No 2
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=100.00 E-value=5.3e-38 Score=247.19 Aligned_cols=92 Identities=45% Similarity=0.782 Sum_probs=89.4
Q ss_pred ccceeeeeccCCccCCCcCchhhhHhhhhhhhhhhhHhhhhhhhhHhhhhccCceecccccCCchhHHHhhhcCCCcccc
Q psy163 4 VHHEERTMDVPSLTPAYVRLFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 83 (97)
Q Consensus 4 ~~~~i~ilD~~GFe~f~~n~feql~iN~~nE~l~~~~~~~~f~~~~~ey~~Egi~~~~i~~~dn~~~ldli~~~p~Gil~ 83 (97)
..++||||||||||+|+.||||||||||||||||++|++++|+.+|++|.+|||.|..++|.||++|+|||++||.|||+
T Consensus 363 ~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~ 442 (677)
T cd01383 363 TGRSISILDIYGFESFDKNSFEQFCINYANERLQQHFNRHLFKLEQEEYEEDGIDWTKVEFEDNQECLDLFEKKPLGLLS 442 (677)
T ss_pred ccceEEEeeccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHH
Confidence 35699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhccccc
Q psy163 84 VLDDQAKFHKLW 95 (97)
Q Consensus 84 lLDeec~~Pk~~ 95 (97)
+|||||++|+++
T Consensus 443 lLdee~~~p~~t 454 (677)
T cd01383 443 LLDEESTFPNAT 454 (677)
T ss_pred HhHHHHcCCCCC
Confidence 999999999975
No 3
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=100.00 E-value=6.7e-38 Score=246.65 Aligned_cols=92 Identities=45% Similarity=0.694 Sum_probs=89.2
Q ss_pred ccceeeeeccCCccCCCcCchhhhHhhhhhhhhhhhHhhhhhhhhHhhhhccCceecccccCCchhHHHhhhcCCCcccc
Q psy163 4 VHHEERTMDVPSLTPAYVRLFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 83 (97)
Q Consensus 4 ~~~~i~ilD~~GFe~f~~n~feql~iN~~nE~l~~~~~~~~f~~~~~ey~~Egi~~~~i~~~dn~~~ldli~~~p~Gil~ 83 (97)
..++||||||||||+|+.||||||||||||||||++|++++|+.+|++|.+|||.|..++|.||++|+|||++||.|||+
T Consensus 359 ~~~~IgILDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~vF~~eq~eY~~EgI~~~~i~f~dN~~~ldLi~~kp~Gil~ 438 (677)
T cd01387 359 DTLSIAILDIYGFEDLSFNSFEQLCINYANENLQYLFNKIVFQEEQEEYIREQLDWTEIAFADNQPVINLISLKPYGILR 438 (677)
T ss_pred CCceEEEEecCccccCCCCCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCcCChHHHHHHHhcCCCchHH
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhccccc
Q psy163 84 VLDDQAKFHKLW 95 (97)
Q Consensus 84 lLDeec~~Pk~~ 95 (97)
+|||||++|+++
T Consensus 439 lLdee~~~p~~t 450 (677)
T cd01387 439 ILDDQCCFPQAT 450 (677)
T ss_pred HHHHHhcCCCCc
Confidence 999999999975
No 4
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=100.00 E-value=8.3e-38 Score=245.96 Aligned_cols=92 Identities=45% Similarity=0.726 Sum_probs=89.5
Q ss_pred ccceeeeeccCCccCCCcCchhhhHhhhhhhhhhhhHhhhhhhhhHhhhhccCceecccccCCchhHHHhhhcCCCcccc
Q psy163 4 VHHEERTMDVPSLTPAYVRLFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 83 (97)
Q Consensus 4 ~~~~i~ilD~~GFe~f~~n~feql~iN~~nE~l~~~~~~~~f~~~~~ey~~Egi~~~~i~~~dn~~~ldli~~~p~Gil~ 83 (97)
...+||||||||||+|+.||||||||||||||||++|++++|+.+|++|.+|||.|..++|.||++|+|||++||.|||+
T Consensus 360 ~~~~IgiLDIfGFE~f~~NsfEQLcINy~NEkLQ~~f~~~vf~~eq~eY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~ 439 (671)
T cd01381 360 SRNSIGVLDIFGFENFDVNSFEQLCINFANENLQQFFVQHIFKLEQEEYNLEHINWQHIEFVDNQDALDLIAIKPLNIMS 439 (671)
T ss_pred ccceEEEEecCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccCccCcHHHHHHHhcCCCCcce
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhccccc
Q psy163 84 VLDDQAKFHKLW 95 (97)
Q Consensus 84 lLDeec~~Pk~~ 95 (97)
+|||||++|+++
T Consensus 440 lLDee~~~p~~t 451 (671)
T cd01381 440 LIDEESKFPKGT 451 (671)
T ss_pred echHhhcCCCCC
Confidence 999999999975
No 5
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=100.00 E-value=3.4e-38 Score=257.24 Aligned_cols=92 Identities=42% Similarity=0.742 Sum_probs=88.5
Q ss_pred ccceeeeeccCCccCCCcCchhhhHhhhhhhhhhhhHhhhhhhhhHhhhhccCceecccccCCchhHHHhhhc-CCCccc
Q psy163 4 VHHEERTMDVPSLTPAYVRLFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG-KPNGLL 82 (97)
Q Consensus 4 ~~~~i~ilD~~GFe~f~~n~feql~iN~~nE~l~~~~~~~~f~~~~~ey~~Egi~~~~i~~~dn~~~ldli~~-~p~Gil 82 (97)
+.+.||||||+|||.|+.|||||||||||||||||+|++|+|+.+|++|.+|||.|.+|+|.||++|+|||++ .|.|||
T Consensus 426 ~~~fIGVLDIyGFEiFEkNSFEQlCINYtNEKLQQ~Fn~h~FklEQEeY~kE~IeW~~Idy~DnQ~~IDLIE~~~p~GIl 505 (1463)
T COG5022 426 ASNFIGVLDIYGFEIFEKNSFEQLCINYTNEKLQQFFNQHMFKLEQEEYVKEGIEWSFIDYFDNQPCIDLIEKKNPLGIL 505 (1463)
T ss_pred cccceeEEeecchhhhccCcHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCcchhHHHhccCCCchH
Confidence 4679999999999999999999999999999999999999999999999999999999999999999999996 378999
Q ss_pred ccchhhhhccccc
Q psy163 83 CVLDDQAKFHKLW 95 (97)
Q Consensus 83 ~lLDeec~~Pk~~ 95 (97)
++|||||..|.++
T Consensus 506 slLDEE~~~p~at 518 (1463)
T COG5022 506 SLLDEECVMPHAT 518 (1463)
T ss_pred hhhcHHhcCCCCC
Confidence 9999999999875
No 6
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=100.00 E-value=1.1e-37 Score=245.31 Aligned_cols=92 Identities=45% Similarity=0.687 Sum_probs=89.4
Q ss_pred ccceeeeeccCCccCCCcCchhhhHhhhhhhhhhhhHhhhhhhhhHhhhhccCceecccccCCchhHHHhhhcCCCcccc
Q psy163 4 VHHEERTMDVPSLTPAYVRLFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 83 (97)
Q Consensus 4 ~~~~i~ilD~~GFe~f~~n~feql~iN~~nE~l~~~~~~~~f~~~~~ey~~Egi~~~~i~~~dn~~~ldli~~~p~Gil~ 83 (97)
..++||||||||||+|+.|||||||||||||+||++|++++|+.+|++|.+|||+|..++|.||++|+|||+++|.|||+
T Consensus 365 ~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~if~~eq~eY~~EgI~~~~i~~~DN~~~ldLie~~~~Gil~ 444 (674)
T cd01384 365 SKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIA 444 (674)
T ss_pred CCeEEEEEecccccccCcCCHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccCCChHHHHHHHhcCCccHHH
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhccccc
Q psy163 84 VLDDQAKFHKLW 95 (97)
Q Consensus 84 lLDeec~~Pk~~ 95 (97)
+|||||++|+++
T Consensus 445 lLdee~~~p~~t 456 (674)
T cd01384 445 LLDEACMFPKST 456 (674)
T ss_pred HHHHHHcCCCCC
Confidence 999999999975
No 7
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=100.00 E-value=1.1e-37 Score=244.56 Aligned_cols=92 Identities=41% Similarity=0.688 Sum_probs=89.3
Q ss_pred ccceeeeeccCCccCCCcCchhhhHhhhhhhhhhhhHhhhhhhhhHhhhhccCceecccccCCchhHHHhhhcCCCcccc
Q psy163 4 VHHEERTMDVPSLTPAYVRLFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 83 (97)
Q Consensus 4 ~~~~i~ilD~~GFe~f~~n~feql~iN~~nE~l~~~~~~~~f~~~~~ey~~Egi~~~~i~~~dn~~~ldli~~~p~Gil~ 83 (97)
...+||||||||||+|+.||||||||||||||||++|++++|+.++++|.+|||+|..++|.||++|+|||++||.|||+
T Consensus 371 ~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~vf~~Eq~eY~~EgI~~~~i~~~dN~~~ldli~~kp~Gil~ 450 (653)
T cd01379 371 DQLNVGILDIFGFENFKKNSFEQLCINIANEQIQYYFNQHIFAWEQQEYLNEGVDARLVEYEDNRPLLDMFLQKPLGLLA 450 (653)
T ss_pred ccceEEEEeccccccCCCCCHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHhHccCCCcHHH
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhccccc
Q psy163 84 VLDDQAKFHKLW 95 (97)
Q Consensus 84 lLDeec~~Pk~~ 95 (97)
+|||||++|+++
T Consensus 451 lLdee~~~~~~t 462 (653)
T cd01379 451 LLDEESRFPQAT 462 (653)
T ss_pred HHHHHhcCCCCC
Confidence 999999999975
No 8
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=100.00 E-value=1.2e-37 Score=246.39 Aligned_cols=92 Identities=34% Similarity=0.612 Sum_probs=89.3
Q ss_pred ccceeeeeccCCccCCCcCchhhhHhhhhhhhhhhhHhhhhhhhhHhhhhccCceecccccCCchhHHHhhhcCCCcccc
Q psy163 4 VHHEERTMDVPSLTPAYVRLFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 83 (97)
Q Consensus 4 ~~~~i~ilD~~GFe~f~~n~feql~iN~~nE~l~~~~~~~~f~~~~~ey~~Egi~~~~i~~~dn~~~ldli~~~p~Gil~ 83 (97)
..++||||||||||+|+.||||||||||||||||++|++++|..++++|.+|||+|..++|.||++|+|||++||.|||+
T Consensus 395 ~~~~IgiLDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~if~~Eq~~Y~~EgI~~~~i~~~DN~~~ldLie~k~~Gil~ 474 (717)
T cd01382 395 SSNFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQREGLGVNEVHYVDNQDCIDLIEAKLNGILD 474 (717)
T ss_pred CCcEEEEEeccccccCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccHHHHHHHhcCCccHHH
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhccccc
Q psy163 84 VLDDQAKFHKLW 95 (97)
Q Consensus 84 lLDeec~~Pk~~ 95 (97)
+|||||++|+++
T Consensus 475 lLDee~~~p~~t 486 (717)
T cd01382 475 ILDEENRLPQPS 486 (717)
T ss_pred HhHHHhcCCCCC
Confidence 999999999874
No 9
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=100.00 E-value=1.3e-37 Score=245.40 Aligned_cols=92 Identities=49% Similarity=0.840 Sum_probs=89.2
Q ss_pred ccceeeeeccCCccCCCc-CchhhhHhhhhhhhhhhhHhhhhhhhhHhhhhccCceecccccCCchhHHHhhhcCCCccc
Q psy163 4 VHHEERTMDVPSLTPAYV-RLFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 82 (97)
Q Consensus 4 ~~~~i~ilD~~GFe~f~~-n~feql~iN~~nE~l~~~~~~~~f~~~~~ey~~Egi~~~~i~~~dn~~~ldli~~~p~Gil 82 (97)
..++||||||||||+|+. |+||||||||||||||++|++++|+.+|++|.+|||.|..++|.||++|+|||++||.|||
T Consensus 374 ~~~~IgiLDI~GFE~f~~~NsfEQLcINyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~f~dN~~~ldLie~k~~Gil 453 (692)
T cd01385 374 SGLSIGVLDIFGFEDFGRCNSFEQLCINYANEQLQYYFNQHIFKLEQEEYQGEGITWTNIEYTDNVGCIQLFSKKPTGLL 453 (692)
T ss_pred cceEEEEEecCccccCCCCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHH
Confidence 356899999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhccccc
Q psy163 83 CVLDDQAKFHKLW 95 (97)
Q Consensus 83 ~lLDeec~~Pk~~ 95 (97)
++|||||++|+++
T Consensus 454 ~lLdee~~~p~~t 466 (692)
T cd01385 454 YLLDEESNFPHAT 466 (692)
T ss_pred HHhHHHhcCCCCC
Confidence 9999999999975
No 10
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=100.00 E-value=2.2e-37 Score=243.68 Aligned_cols=93 Identities=35% Similarity=0.602 Sum_probs=89.5
Q ss_pred CccceeeeeccCCccCCCcCchhhhHhhhhhhhhhhhHhhhhhhhhHhhhhccCceecccccCCchhHHHhhhc-CCCcc
Q psy163 3 NVHHEERTMDVPSLTPAYVRLFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG-KPNGL 81 (97)
Q Consensus 3 ~~~~~i~ilD~~GFe~f~~n~feql~iN~~nE~l~~~~~~~~f~~~~~ey~~Egi~~~~i~~~dn~~~ldli~~-~p~Gi 81 (97)
...++||||||||||+|+.||||||||||||||||++|++++|+.++++|.+|||+|..++|.||++|+|||++ +|.||
T Consensus 363 ~~~~~IgILDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~~F~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~~~~~Gi 442 (674)
T cd01378 363 GKNKVIGVLDIYGFEIFQKNSFEQFCINYVNEKLQQIFIELTLKAEQEEYVREGIKWTPIEYFNNKIVCDLIEGKRPPGI 442 (674)
T ss_pred cCcceEEEEecccccccccccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCcCChHHHHHHHhcCCCcch
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999 89999
Q ss_pred cccchhhhhcc-ccc
Q psy163 82 LCVLDDQAKFH-KLW 95 (97)
Q Consensus 82 l~lLDeec~~P-k~~ 95 (97)
|++|||||++| +++
T Consensus 443 l~lLdee~~~p~~~t 457 (674)
T cd01378 443 FSILDDVCATPHEGT 457 (674)
T ss_pred HHHHHHHHcCCCCCC
Confidence 99999999999 764
No 11
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=100.00 E-value=5.4e-37 Score=242.05 Aligned_cols=92 Identities=41% Similarity=0.704 Sum_probs=88.9
Q ss_pred ccceeeeeccCCccCCCcCchhhhHhhhhhhhhhhhHhhhhhhhhHhhhhccCceeccccc-CCchhHHHhhhcCCCccc
Q psy163 4 VHHEERTMDVPSLTPAYVRLFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLL 82 (97)
Q Consensus 4 ~~~~i~ilD~~GFe~f~~n~feql~iN~~nE~l~~~~~~~~f~~~~~ey~~Egi~~~~i~~-~dn~~~ldli~~~p~Gil 82 (97)
..++||||||||||+|+.|||||||||||||+||++|++++|+.++++|.+|||.|..++| .||++|+|||++||.|||
T Consensus 372 ~~~~IgiLDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~~~~dn~~~ldLie~~~~Gil 451 (693)
T cd01377 372 RAYFIGVLDIAGFEIFDFNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWTFIDFGLDLQPTIDLIEKNPMGIL 451 (693)
T ss_pred CCceEEEEecccccccCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCCcHHHHHHHhcCCCchH
Confidence 5679999999999999999999999999999999999999999999999999999999999 599999999999999999
Q ss_pred ccchhhhhccccc
Q psy163 83 CVLDDQAKFHKLW 95 (97)
Q Consensus 83 ~lLDeec~~Pk~~ 95 (97)
++|||||++|+++
T Consensus 452 ~lLdee~~~~~~t 464 (693)
T cd01377 452 SLLDEECVFPKAT 464 (693)
T ss_pred hhhhHHhcCCCCC
Confidence 9999999999875
No 12
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=100.00 E-value=6.9e-37 Score=241.39 Aligned_cols=92 Identities=45% Similarity=0.720 Sum_probs=88.3
Q ss_pred CccceeeeeccCCccCCCcCchhhhHhhhhhhhhhhhHhhhhhhhhHhhhhccCceecccccCCchhHHHhhhcCCCccc
Q psy163 3 NVHHEERTMDVPSLTPAYVRLFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 82 (97)
Q Consensus 3 ~~~~~i~ilD~~GFe~f~~n~feql~iN~~nE~l~~~~~~~~f~~~~~ey~~Egi~~~~i~~~dn~~~ldli~~~p~Gil 82 (97)
...++||||||||||+|+.|||||||||||||+||++|++++|+.+|++|.+|||+|..++|.||++|+|||++ |.|||
T Consensus 365 ~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~iF~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~-~~Gil 443 (691)
T cd01380 365 KQTSFIGVLDIYGFETFEKNSFEQFCINYANEKLQQQFNQHVFKLEQEEYLKEGIEWTFIDFYDNQPCIDLIES-KLGIL 443 (691)
T ss_pred CccceEEEEecCcccccCCCCHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCCCHHHHHHHhC-CCchH
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999996 69999
Q ss_pred ccchhhhhccccc
Q psy163 83 CVLDDQAKFHKLW 95 (97)
Q Consensus 83 ~lLDeec~~Pk~~ 95 (97)
++|||||++|+++
T Consensus 444 ~lLdee~~~p~~t 456 (691)
T cd01380 444 SLLDEECRLPKGS 456 (691)
T ss_pred HHhHHhhcCCCCC
Confidence 9999999999875
No 13
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=100.00 E-value=3.6e-36 Score=237.02 Aligned_cols=92 Identities=49% Similarity=0.825 Sum_probs=89.4
Q ss_pred ccceeeeeccCCccCCCcCchhhhHhhhhhhhhhhhHhhhhhhhhHhhhhccCceecccccCCchhHHHhhhcCCCcccc
Q psy163 4 VHHEERTMDVPSLTPAYVRLFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 83 (97)
Q Consensus 4 ~~~~i~ilD~~GFe~f~~n~feql~iN~~nE~l~~~~~~~~f~~~~~ey~~Egi~~~~i~~~dn~~~ldli~~~p~Gil~ 83 (97)
..++|+||||||||+|+.|+||||||||||||||++|++++|+.++++|.+|||.|..++|.||++|++||+++|.|||+
T Consensus 367 ~~~~IgiLDifGFE~f~~NsfEQLcINyaNEkLq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dN~~~l~li~~~~~Gil~ 446 (677)
T smart00242 367 STYFIGVLDIYGFEIFEVNSFEQLCINYANEKLQQFFNQHVFKLEQEEYEREGIDWTFIDFFDNQDCIDLIEKKPPGILS 446 (677)
T ss_pred CceEEEEEecccccccccCCHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHHcCCccHHH
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhccccc
Q psy163 84 VLDDQAKFHKLW 95 (97)
Q Consensus 84 lLDeec~~Pk~~ 95 (97)
+|||||++|+++
T Consensus 447 lLdee~~~~~~t 458 (677)
T smart00242 447 LLDEECRFPKAT 458 (677)
T ss_pred HHHHHhcCCCCC
Confidence 999999999874
No 14
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=100.00 E-value=1.4e-35 Score=233.66 Aligned_cols=93 Identities=47% Similarity=0.747 Sum_probs=89.7
Q ss_pred CccceeeeeccCCccCCCcCchhhhHhhhhhhhhhhhHhhhhhhhhHhhhhccCceecccccCCchhHHHhhhcCCCccc
Q psy163 3 NVHHEERTMDVPSLTPAYVRLFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 82 (97)
Q Consensus 3 ~~~~~i~ilD~~GFe~f~~n~feql~iN~~nE~l~~~~~~~~f~~~~~ey~~Egi~~~~i~~~dn~~~ldli~~~p~Gil 82 (97)
...++|+||||||||+|+.|+|||||||||||+||++|++++|+.++++|.+|||.|..++|.||++|+|||+++|.||+
T Consensus 359 ~~~~~IgiLDi~GFE~f~~NsfEQLcINy~NEkLq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dn~~~ldli~~~~~Gi~ 438 (679)
T cd00124 359 GRSLFIGILDIFGFEIFEKNSFEQLCINYANEKLQQFFNQHVFKLEQEEYQEEGIDWESIDFTDNQEVIDLIEKKPGGLL 438 (679)
T ss_pred CCCceeeEEeccccccCCCCCHHHHhcccchHHHHHHHHHHHHHHHHHHHHhcCCCccCCcCCCCHHHHHHHhcCCCcHH
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhccccc
Q psy163 83 CVLDDQAKFHKLW 95 (97)
Q Consensus 83 ~lLDeec~~Pk~~ 95 (97)
++|||||++|+++
T Consensus 439 ~lLdee~~~~~~~ 451 (679)
T cd00124 439 SLLDEECLFPKGT 451 (679)
T ss_pred HHHHHHhCCCCCC
Confidence 9999999999864
No 15
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=100.00 E-value=2.7e-34 Score=228.48 Aligned_cols=91 Identities=29% Similarity=0.416 Sum_probs=84.3
Q ss_pred cceeeeeccCCccCCCc------CchhhhHhhhhhhhhhhhHhhhhhhhhHhhhhccCceeccccc-CCchhHHHhhhcC
Q psy163 5 HHEERTMDVPSLTPAYV------RLFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGK 77 (97)
Q Consensus 5 ~~~i~ilD~~GFe~f~~------n~feql~iN~~nE~l~~~~~~~~f~~~~~ey~~Egi~~~~i~~-~dn~~~ldli~~~ 77 (97)
..+|+||||||||+|++ ||||||||||||||||++|++++|+.+|++|.+|||+|..+.+ .||++|++||+++
T Consensus 372 ~~~IgiLDIfGFE~f~~n~~~~~NsfEQLcINyaNEkLQq~f~~~vF~~Eq~eY~~EGI~~~~~~~~~dn~~~i~lid~~ 451 (767)
T cd01386 372 IASIMLVDTPGFQNPASQGKDRAATFEELCHNYLQERLQLLFHHRTFVQPLERYAEEGVEVEFDLAEPSPGTTVALVDQA 451 (767)
T ss_pred CcEEEEEecccccccccccccCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCchhhHHHhhcc
Confidence 46899999999999974 8999999999999999999999999999999999999986655 7999999999986
Q ss_pred C--------------Ccccccchhhhhccccc
Q psy163 78 P--------------NGLLCVLDDQAKFHKLW 95 (97)
Q Consensus 78 p--------------~Gil~lLDeec~~Pk~~ 95 (97)
| .|||++|||||++|+++
T Consensus 452 p~~~~~~~~~~~~~~~GIl~lLDEec~~p~~t 483 (767)
T cd01386 452 PQQVVVPAGLRAEDARGLLWLLDEEALVPGSS 483 (767)
T ss_pred cccccccchhhccCCCchhhhhhHhhcCCCCc
Confidence 5 59999999999999975
No 16
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=100.00 E-value=2.7e-34 Score=226.38 Aligned_cols=91 Identities=47% Similarity=0.832 Sum_probs=82.3
Q ss_pred ccceeeeeccCCccCCCcCchhhhHhhhhhhhhhhhHhhhhhhhhHhhhhccCceeccccc-CCchhHHHhhhcCCCccc
Q psy163 4 VHHEERTMDVPSLTPAYVRLFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLL 82 (97)
Q Consensus 4 ~~~~i~ilD~~GFe~f~~n~feql~iN~~nE~l~~~~~~~~f~~~~~ey~~Egi~~~~i~~-~dn~~~ldli~~~p~Gil 82 (97)
..++||||||||||+|..|+||||||||||||||++|++++|+.++++|.+|||.|..++| .||++|+|||+++|.|||
T Consensus 362 ~~~~IgILDi~GFE~~~~N~fEQLciNyanErLq~~f~~~~f~~e~~~y~~EgI~~~~i~~~~dn~~~ldLi~~~~~Gil 441 (689)
T PF00063_consen 362 NSSSIGILDIFGFENFSVNSFEQLCINYANERLQQFFNQHIFKSEQEEYKEEGIDWPFIDFNPDNQPCLDLIEKKPKGIL 441 (689)
T ss_dssp -SEEEEEEEEE-B---SSB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCS-GCGHHHHHHHHHHSSTTSHH
T ss_pred ccccCcccCccccccccccccccceeeeccccccceeeeecccccccccccccccccccccccCchhhhhhhccccCCHH
Confidence 5679999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred ccchhhhhcccc
Q psy163 83 CVLDDQAKFHKL 94 (97)
Q Consensus 83 ~lLDeec~~Pk~ 94 (97)
++|||||++|++
T Consensus 442 ~lLdee~~~~~~ 453 (689)
T PF00063_consen 442 SLLDEECLLPRG 453 (689)
T ss_dssp HHHHHHCTSTTS
T ss_pred HHhhhhhhcccc
Confidence 999999999985
No 17
>KOG0161|consensus
Probab=99.98 E-value=7.8e-34 Score=238.15 Aligned_cols=91 Identities=42% Similarity=0.703 Sum_probs=87.6
Q ss_pred ccceeeeeccCCccCCCcCchhhhHhhhhhhhhhhhHhhhhhhhhHhhhhccCceeccccc-CCchhHHHhhhcCCCccc
Q psy163 4 VHHEERTMDVPSLTPAYVRLFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLL 82 (97)
Q Consensus 4 ~~~~i~ilD~~GFe~f~~n~feql~iN~~nE~l~~~~~~~~f~~~~~ey~~Egi~~~~i~~-~dn~~~ldli~~~p~Gil 82 (97)
..+.||||||||||+|+.||||||||||+||+||++|++++|..+|++|++|||.|.+|+| .|.+||++||+ +|+||+
T Consensus 446 ~~~fIgvLDiaGFEIfe~nSFEQLciNytnEkLQqfFnh~mFvlEqeeY~~EgIew~fidfG~Dlq~~idLIE-kp~Gi~ 524 (1930)
T KOG0161|consen 446 RDYFIGVLDIAGFEIFEFNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWDFIDFGLDLQPTIDLIE-KPMGIL 524 (1930)
T ss_pred cCCcceeeeeccccccCcCCHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHhCCceeeeccccchhhhHHHHh-chhhHH
Confidence 3468999999999999999999999999999999999999999999999999999999999 79999999999 588999
Q ss_pred ccchhhhhccccc
Q psy163 83 CVLDDQAKFHKLW 95 (97)
Q Consensus 83 ~lLDeec~~Pk~~ 95 (97)
++|||||++|+|+
T Consensus 525 slLdEEc~~PkAt 537 (1930)
T KOG0161|consen 525 SLLDEECVVPKAT 537 (1930)
T ss_pred HHHHHHHhcCCCc
Confidence 9999999999986
No 18
>KOG0164|consensus
Probab=99.97 E-value=4.4e-33 Score=217.00 Aligned_cols=90 Identities=37% Similarity=0.606 Sum_probs=87.5
Q ss_pred cceeeeeccCCccCCCcCchhhhHhhhhhhhhhhhHhhhhhhhhHhhhhccCceecccccCCchhHHHhhhcCCCccccc
Q psy163 5 HHEERTMDVPSLTPAYVRLFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCV 84 (97)
Q Consensus 5 ~~~i~ilD~~GFe~f~~n~feql~iN~~nE~l~~~~~~~~f~~~~~ey~~Egi~~~~i~~~dn~~~ldli~~~p~Gil~l 84 (97)
.+-|++|||+|||+|+.|||||||||||||||||.|++.++++|||||.+|||+|.+++|.+|.-++||++.+..||++|
T Consensus 374 ~~Vigvldiygfeif~~NSFEQfcINYCNEKLQQlFIel~LKqEQEEY~rEgI~W~~i~YFnN~iIcdLvE~~~~GIlai 453 (1001)
T KOG0164|consen 374 NTVIGVLDIYGFEIFQDNSFEQFCINYCNEKLQQLFIELVLKQEQEEYEREGIEWTHIDYFNNKIICDLVEQPHKGILAI 453 (1001)
T ss_pred ceEEEEEEeeeEEeecCCcHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCCceehhhcCCceeeehhccCccchhhh
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhcccc
Q psy163 85 LDDQAKFHKL 94 (97)
Q Consensus 85 LDeec~~Pk~ 94 (97)
|||||+.|+.
T Consensus 454 lDe~Cl~~G~ 463 (1001)
T KOG0164|consen 454 LDEACLRPGT 463 (1001)
T ss_pred hhHHhcCCCc
Confidence 9999999975
No 19
>KOG0163|consensus
Probab=99.97 E-value=9.1e-32 Score=210.81 Aligned_cols=92 Identities=41% Similarity=0.679 Sum_probs=89.3
Q ss_pred ccceeeeeccCCccCCCcCchhhhHhhhhhhhhhhhHhhhhhhhhHhhhhccCceecccccCCchhHHHhhhcCCCcccc
Q psy163 4 VHHEERTMDVPSLTPAYVRLFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 83 (97)
Q Consensus 4 ~~~~i~ilD~~GFe~f~~n~feql~iN~~nE~l~~~~~~~~f~~~~~ey~~Egi~~~~i~~~dn~~~ldli~~~p~Gil~ 83 (97)
.+.-|||||++|||.|.+|||||||||||||+||++|++++++.+|+.|.+||+.++.|.|.||++|++||+.|..||+.
T Consensus 449 St~fiGVLDiAGFEyf~~NSFEQFCINyCNEKLQ~FFNerILkeEQElYekEGLnv~ei~f~DNqDcIeL~E~K~~Gifd 528 (1259)
T KOG0163|consen 449 STFFIGVLDIAGFEYFAVNSFEQFCINYCNEKLQKFFNERILKEEQELYEKEGLNVPEIEFTDNQDCIELIEAKSNGIFD 528 (1259)
T ss_pred ccceeEEEeeccceeeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEeccchhHHHHHHHhccchhh
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhccccc
Q psy163 84 VLDDQAKFHKLW 95 (97)
Q Consensus 84 lLDeec~~Pk~~ 95 (97)
|||||.++|++.
T Consensus 529 lLDEEaklP~~s 540 (1259)
T KOG0163|consen 529 LLDEEAKLPKPS 540 (1259)
T ss_pred hhhhhccCCCcc
Confidence 999999999975
No 20
>KOG0162|consensus
Probab=99.96 E-value=5.9e-30 Score=200.05 Aligned_cols=88 Identities=34% Similarity=0.586 Sum_probs=84.3
Q ss_pred ccceeeeeccCCccCCCcCchhhhHhhhhhhhhhhhHhhhhhhhhHhhhhccCceecccccCCchhHHHhhhc-CCCccc
Q psy163 4 VHHEERTMDVPSLTPAYVRLFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG-KPNGLL 82 (97)
Q Consensus 4 ~~~~i~ilD~~GFe~f~~n~feql~iN~~nE~l~~~~~~~~f~~~~~ey~~Egi~~~~i~~~dn~~~ldli~~-~p~Gil 82 (97)
...+||||||+|||+|+.|||||+||||.||+|||.|++.+++.|||+|.+|||.|.+|.|.||.-++|||+. +|.|||
T Consensus 381 ~~~sIGiLDIYGFEIFe~N~FEQ~CINfVNEKLQQIFIeLTLKaEQEeYvrE~I~WTpIkYFnNKvVCDLIE~K~PPGim 460 (1106)
T KOG0162|consen 381 EEYSIGILDIYGFEIFENNGFEQFCINFVNEKLQQIFIELTLKAEQEEYVREGIKWTPIKYFNNKVVCDLIENKRPPGIM 460 (1106)
T ss_pred cccceeeEEeeeeeecccCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcccccchhhcCCeeeeehhhccCCchHH
Confidence 5679999999999999999999999999999999999999999999999999999999999999999999997 588999
Q ss_pred ccchhhhhc
Q psy163 83 CVLDDQAKF 91 (97)
Q Consensus 83 ~lLDeec~~ 91 (97)
++|||.|.-
T Consensus 461 s~ldD~~At 469 (1106)
T KOG0162|consen 461 SALDDVCAT 469 (1106)
T ss_pred HHHHHHHHH
Confidence 999999863
No 21
>KOG0160|consensus
Probab=99.95 E-value=3.2e-29 Score=199.61 Aligned_cols=90 Identities=49% Similarity=0.765 Sum_probs=87.6
Q ss_pred cceeeeeccCCccCCCcCchhhhHhhhhhhhhhhhHhhhhhhhhHhhhhccCceecccccCCchhHHHhhhcCCCccccc
Q psy163 5 HHEERTMDVPSLTPAYVRLFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCV 84 (97)
Q Consensus 5 ~~~i~ilD~~GFe~f~~n~feql~iN~~nE~l~~~~~~~~f~~~~~ey~~Egi~~~~i~~~dn~~~ldli~~~p~Gil~l 84 (97)
...|++||++|||.|+.|+||||||||+||+||+.|++|+|+.+|++|..|+|.|..++|.||++|+++|+. |.|++++
T Consensus 367 ~~~igVLDiYgFEsF~~nsfeQfcINyanEkLqq~fnqHvfk~Eqeey~~e~i~Ws~ief~dNq~~~~lie~-~~Gi~~L 445 (862)
T KOG0160|consen 367 ERFIGVLDIYGFESFEVNSFEQFCINYANEKLQQQFNQHVFKLEQEEYTKEEIDWSGIEFRDNQECLDLIEK-PLGILAL 445 (862)
T ss_pred cceeeeehcccccccccCcHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHhhccccccccCcCccchhhhhcc-ccchhhc
Confidence 579999999999999999999999999999999999999999999999999999999999999999999996 9999999
Q ss_pred chhhhhccccc
Q psy163 85 LDDQAKFHKLW 95 (97)
Q Consensus 85 LDeec~~Pk~~ 95 (97)
|||||++|+++
T Consensus 446 lde~c~lp~~t 456 (862)
T KOG0160|consen 446 LDEECMLPKGT 456 (862)
T ss_pred cchhccCCCCC
Confidence 99999999874
No 22
>KOG4229|consensus
Probab=99.93 E-value=4.1e-27 Score=190.97 Aligned_cols=91 Identities=47% Similarity=0.794 Sum_probs=88.9
Q ss_pred cceeeeeccCCccCCCcCchhhhHhhhhhhhhhhhHhhhhhhhhHhhhhccCceecccccCCchhHHHhhhcCCCccccc
Q psy163 5 HHEERTMDVPSLTPAYVRLFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCV 84 (97)
Q Consensus 5 ~~~i~ilD~~GFe~f~~n~feql~iN~~nE~l~~~~~~~~f~~~~~ey~~Egi~~~~i~~~dn~~~ldli~~~p~Gil~l 84 (97)
...|||+|+||||+|..|+|||+|+|+|||++|.+|++++|..++++|..|+|.|..+.|.||..|+++|..||+|||.+
T Consensus 426 ~~~IgiLdiFgfE~f~~nsfEq~~in~Ane~lQ~~fnqhIf~~Eq~ey~~e~I~w~~i~~~dN~~~ldli~~kp~gil~l 505 (1062)
T KOG4229|consen 426 ILSIGILDIFGFENFERNSFEQLCINLANEQLQYYFNQHIFALEQEEYDNESIDWRNIEFADNRRRLDLISPKPMGILSL 505 (1062)
T ss_pred cceeehhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCCCeeeeeeeeccchhhhhccCccchhhe
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhccccc
Q psy163 85 LDDQAKFHKLW 95 (97)
Q Consensus 85 LDeec~~Pk~~ 95 (97)
||||+.||+++
T Consensus 506 iDees~fP~~t 516 (1062)
T KOG4229|consen 506 IDEESRFPKAT 516 (1062)
T ss_pred ecccCcCCchH
Confidence 99999999985
No 23
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=78.06 E-value=2 Score=32.76 Aligned_cols=38 Identities=13% Similarity=0.279 Sum_probs=26.0
Q ss_pred CccceeeeeccCCccCCCcCchh-hhHhhhhhhhhhhhH
Q psy163 3 NVHHEERTMDVPSLTPAYVRLFE-QLCINYANEHLQYYF 40 (97)
Q Consensus 3 ~~~~~i~ilD~~GFe~f~~n~fe-ql~iN~~nE~l~~~~ 40 (97)
+++..+.|+|+|||-.+-.|+.- +-.++|..++..+|+
T Consensus 79 ~~~~~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl 117 (373)
T COG5019 79 GFHLNLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYL 117 (373)
T ss_pred CeEEEEEEeccCCccccccccccHHHHHHHHHHHHHHHH
Confidence 35668999999999877555432 445577776666654
No 24
>KOG2655|consensus
Probab=74.42 E-value=3.6 Score=31.31 Aligned_cols=39 Identities=18% Similarity=0.301 Sum_probs=28.8
Q ss_pred CccceeeeeccCCccCCCcCchh-hhHhhhhhhhhhhhHh
Q psy163 3 NVHHEERTMDVPSLTPAYVRLFE-QLCINYANEHLQYYFN 41 (97)
Q Consensus 3 ~~~~~i~ilD~~GFe~f~~n~fe-ql~iN~~nE~l~~~~~ 41 (97)
+++-.++|+|+|||-.+-.|+.. +-.++|..++..+|+.
T Consensus 76 g~~l~LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~ 115 (366)
T KOG2655|consen 76 GVKLNLTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLD 115 (366)
T ss_pred CeEEeeEEeccCCCcccccccccchhhhHHHHHHHHHHHh
Confidence 45668899999999866545433 5667888888888764
No 25
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=67.40 E-value=8 Score=27.86 Aligned_cols=35 Identities=11% Similarity=0.244 Sum_probs=23.8
Q ss_pred ceeeeeccCCccCCCcCch-hhhHhhhhhhhhhhhH
Q psy163 6 HEERTMDVPSLTPAYVRLF-EQLCINYANEHLQYYF 40 (97)
Q Consensus 6 ~~i~ilD~~GFe~f~~n~f-eql~iN~~nE~l~~~~ 40 (97)
-.+.|+|+|||..+..|+- -+-.++|..+++..+.
T Consensus 63 ~~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l 98 (276)
T cd01850 63 LKLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYL 98 (276)
T ss_pred EEEEEEecCCccccccchhhHHHHHHHHHHHHHHHH
Confidence 3689999999987654432 1455677777766655
No 26
>KOG1547|consensus
Probab=56.60 E-value=23 Score=26.20 Aligned_cols=55 Identities=13% Similarity=0.232 Sum_probs=35.5
Q ss_pred ccceeeeeccCCccCCCcC--chhhhHhhhhhhhhhhhHhhhhhhhhHhhhhccCcee
Q psy163 4 VHHEERTMDVPSLTPAYVR--LFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRW 59 (97)
Q Consensus 4 ~~~~i~ilD~~GFe~f~~n--~feql~iN~~nE~l~~~~~~~~f~~~~~ey~~Egi~~ 59 (97)
|.-.+.++|+|||-.+-.| -. +-.+-|.||+--+|...-+....++....-.+.+
T Consensus 102 VklkltviDTPGfGDqInN~ncW-ePI~kyIneQye~yL~eElni~R~kripDTRVHc 158 (336)
T KOG1547|consen 102 VKLKLTVIDTPGFGDQINNDNCW-EPIEKYINEQYEQYLREELNIAREKRIPDTRVHC 158 (336)
T ss_pred eEEEEEEecCCCcccccCccchh-HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEE
Confidence 4557899999999866444 34 4556788888777765555444444444445544
No 27
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=56.31 E-value=16 Score=26.54 Aligned_cols=37 Identities=14% Similarity=0.230 Sum_probs=23.9
Q ss_pred ccceeeeeccCCccCCCcCchh-hhHhhhhhhhhhhhH
Q psy163 4 VHHEERTMDVPSLTPAYVRLFE-QLCINYANEHLQYYF 40 (97)
Q Consensus 4 ~~~~i~ilD~~GFe~f~~n~fe-ql~iN~~nE~l~~~~ 40 (97)
+.-.+.|+|+|||...-.|+.. +..++|..++...+.
T Consensus 61 ~~l~LtiiDTpGfGd~i~n~~~~~~I~~yI~~qf~~~l 98 (281)
T PF00735_consen 61 VKLNLTIIDTPGFGDNIDNSDCWEPIVDYIESQFDSYL 98 (281)
T ss_dssp EEEEEEEEEEC-CSSSSTHCHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCccccccchhhhHHHHHHHHHHHHHHH
Confidence 3446889999999865444322 456678877777654
No 28
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=42.61 E-value=14 Score=25.33 Aligned_cols=12 Identities=25% Similarity=0.479 Sum_probs=8.4
Q ss_pred ceeeeeccCCcc
Q psy163 6 HEERTMDVPSLT 17 (97)
Q Consensus 6 ~~i~ilD~~GFe 17 (97)
..|.|+|+|||-
T Consensus 49 ~~v~VIDTPGl~ 60 (212)
T PF04548_consen 49 RQVTVIDTPGLF 60 (212)
T ss_dssp EEEEEEE--SSE
T ss_pred eEEEEEeCCCCC
Confidence 479999999983
No 29
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=40.98 E-value=16 Score=24.38 Aligned_cols=15 Identities=20% Similarity=0.321 Sum_probs=12.0
Q ss_pred ceeeeeccCCccCCC
Q psy163 6 HEERTMDVPSLTPAY 20 (97)
Q Consensus 6 ~~i~ilD~~GFe~f~ 20 (97)
..|.++|+|||-...
T Consensus 49 ~~i~viDTPG~~d~~ 63 (196)
T cd01852 49 RRVNVIDTPGLFDTS 63 (196)
T ss_pred eEEEEEECcCCCCcc
Confidence 478999999987553
No 30
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=38.95 E-value=13 Score=24.98 Aligned_cols=16 Identities=13% Similarity=0.154 Sum_probs=11.1
Q ss_pred eeeeeccCCccCCCcC
Q psy163 7 EERTMDVPSLTPAYVR 22 (97)
Q Consensus 7 ~i~ilD~~GFe~f~~n 22 (97)
..-|+|.|||..|+..
T Consensus 88 g~~iIDTPGf~~~~l~ 103 (161)
T PF03193_consen 88 GGYIIDTPGFRSFGLW 103 (161)
T ss_dssp SEEEECSHHHHT--GC
T ss_pred CcEEEECCCCCccccc
Confidence 3578999999987654
No 31
>COG1162 Predicted GTPases [General function prediction only]
Probab=34.85 E-value=33 Score=25.50 Aligned_cols=14 Identities=14% Similarity=0.268 Sum_probs=11.3
Q ss_pred eeeccCCccCCCcC
Q psy163 9 RTMDVPSLTPAYVR 22 (97)
Q Consensus 9 ~ilD~~GFe~f~~n 22 (97)
-|+|+|||..|+..
T Consensus 219 ~iiDTPGf~~~~l~ 232 (301)
T COG1162 219 WIIDTPGFRSLGLA 232 (301)
T ss_pred EEEeCCCCCccCcc
Confidence 37899999988763
No 32
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=31.96 E-value=16 Score=24.22 Aligned_cols=16 Identities=13% Similarity=0.144 Sum_probs=12.7
Q ss_pred ccceeeeeccCCccCC
Q psy163 4 VHHEERTMDVPSLTPA 19 (97)
Q Consensus 4 ~~~~i~ilD~~GFe~f 19 (97)
..+.|.++|.||.+.|
T Consensus 68 ~~~~i~~iDtPG~~~f 83 (188)
T PF00009_consen 68 NNRKITLIDTPGHEDF 83 (188)
T ss_dssp SSEEEEEEEESSSHHH
T ss_pred cccceeecccccccce
Confidence 4568999999998654
No 33
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=31.23 E-value=32 Score=20.66 Aligned_cols=13 Identities=15% Similarity=0.284 Sum_probs=10.4
Q ss_pred eeeeeccCCccCC
Q psy163 7 EERTMDVPSLTPA 19 (97)
Q Consensus 7 ~i~ilD~~GFe~f 19 (97)
.+.++|+||+...
T Consensus 48 ~~~~vDtpG~~~~ 60 (116)
T PF01926_consen 48 KFILVDTPGINDG 60 (116)
T ss_dssp EEEEEESSSCSSS
T ss_pred eEEEEeCCCCccc
Confidence 5679999998754
No 34
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=29.74 E-value=20 Score=22.86 Aligned_cols=13 Identities=23% Similarity=0.422 Sum_probs=10.7
Q ss_pred ceeeeeccCCccC
Q psy163 6 HEERTMDVPSLTP 18 (97)
Q Consensus 6 ~~i~ilD~~GFe~ 18 (97)
..+.++|+||+-.
T Consensus 101 ~~~~lvDtPG~~~ 113 (168)
T PF00350_consen 101 RNLTLVDTPGLNS 113 (168)
T ss_dssp CSEEEEEEEEBHS
T ss_pred cceEEEeCCcccc
Confidence 4689999999964
No 35
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=28.45 E-value=48 Score=23.37 Aligned_cols=16 Identities=13% Similarity=0.111 Sum_probs=12.4
Q ss_pred eeeccCCccCCCcCch
Q psy163 9 RTMDVPSLTPAYVRLF 24 (97)
Q Consensus 9 ~ilD~~GFe~f~~n~f 24 (97)
-|+|+|||..++....
T Consensus 174 ~liDtPG~~~~~l~~~ 189 (245)
T TIGR00157 174 LIADTPGFNEFGLWHL 189 (245)
T ss_pred EEEeCCCccccCCCCC
Confidence 5899999988775443
No 36
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=27.67 E-value=40 Score=20.71 Aligned_cols=15 Identities=20% Similarity=0.220 Sum_probs=12.1
Q ss_pred ceeeeeccCCccCCC
Q psy163 6 HEERTMDVPSLTPAY 20 (97)
Q Consensus 6 ~~i~ilD~~GFe~f~ 20 (97)
..+.++|+||++.+.
T Consensus 45 ~~~~i~DtpG~~~~~ 59 (157)
T cd01894 45 REFILIDTGGIEPDD 59 (157)
T ss_pred eEEEEEECCCCCCch
Confidence 457899999998654
No 37
>COG1400 SEC65 Signal recognition particle 19 kDa protein [Intracellular trafficking and secretion]
Probab=27.04 E-value=26 Score=21.59 Aligned_cols=27 Identities=22% Similarity=0.553 Sum_probs=20.3
Q ss_pred hhHHHhhhcCCCcccccchhhhhcccccc
Q psy163 68 TLCLQLVEGKPNGLLCVLDDQAKFHKLWW 96 (97)
Q Consensus 68 ~~~ldli~~~p~Gil~lLDeec~~Pk~~~ 96 (97)
..+.+.+. .-|+-..-..|+..|+.||
T Consensus 35 ~ei~~a~~--~LGl~~~v~~dk~yPr~~w 61 (93)
T COG1400 35 EEIAEALR--ELGLKPKVERDKKYPRLWW 61 (93)
T ss_pred HHHHHHHH--HcCCCeeechhhcCCCchh
Confidence 34455554 3688888889999999999
No 38
>COG2153 ElaA Predicted acyltransferase [General function prediction only]
Probab=25.15 E-value=35 Score=22.94 Aligned_cols=28 Identities=36% Similarity=0.502 Sum_probs=24.8
Q ss_pred hhhhhhhhhHhhhhhhhhHhhhhccCce
Q psy163 31 YANEHLQYYFNQHVFQYEQEEYNKEGIR 58 (97)
Q Consensus 31 ~~nE~l~~~~~~~~f~~~~~ey~~Egi~ 58 (97)
-|.+.||.+|-..-|....++|.++||+
T Consensus 117 ~AQahLq~fYa~~GFv~~~e~yledGIp 144 (155)
T COG2153 117 GAQAHLQDFYASFGFVRVGEEYLEDGIP 144 (155)
T ss_pred ehHHHHHHHHHHhCcEEcCchhhcCCCC
Confidence 4778899999999999999999999995
No 39
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=23.75 E-value=52 Score=20.31 Aligned_cols=14 Identities=21% Similarity=0.261 Sum_probs=11.3
Q ss_pred eeeeeccCCccCCC
Q psy163 7 EERTMDVPSLTPAY 20 (97)
Q Consensus 7 ~i~ilD~~GFe~f~ 20 (97)
.+.++|+||++.+.
T Consensus 44 ~~~liDtpG~~~~~ 57 (158)
T cd01879 44 EIEIVDLPGTYSLS 57 (158)
T ss_pred EEEEEECCCccccC
Confidence 57899999987654
No 40
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=21.99 E-value=50 Score=23.47 Aligned_cols=14 Identities=21% Similarity=0.394 Sum_probs=11.3
Q ss_pred ceeeeeccCCccCC
Q psy163 6 HEERTMDVPSLTPA 19 (97)
Q Consensus 6 ~~i~ilD~~GFe~f 19 (97)
..|.++|+|||...
T Consensus 79 ~~i~vIDTPGl~~~ 92 (249)
T cd01853 79 FKLNIIDTPGLLES 92 (249)
T ss_pred eEEEEEECCCcCcc
Confidence 36899999999754
No 41
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=20.87 E-value=63 Score=21.59 Aligned_cols=20 Identities=5% Similarity=-0.174 Sum_probs=15.8
Q ss_pred cceeeeeccCCccCCCcCch
Q psy163 5 HHEERTMDVPSLTPAYVRLF 24 (97)
Q Consensus 5 ~~~i~ilD~~GFe~f~~n~f 24 (97)
.+.+.++|++|.|..+..+.
T Consensus 106 ~s~l~lVDLAGsE~~~~~~~ 125 (186)
T cd01363 106 VGKINLVDLAGSERIDFSGA 125 (186)
T ss_pred eeeEEEEEccccccccccCC
Confidence 35889999999998865543
Done!