Query psy163
Match_columns 97
No_of_seqs 112 out of 1127
Neff 7.7
Searched_HMMs 29240
Date Fri Aug 16 17:48:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy163.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/163hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v26_A Myosin VI; calmodulin-b 100.0 1.6E-39 5.5E-44 257.8 7.4 92 4-95 444-535 (784)
2 1lkx_A Myosin IE heavy chain; 100.0 1.8E-39 6.1E-44 255.1 7.2 92 4-95 378-469 (697)
3 4anj_A Unconventional myosin-V 100.0 1.1E-38 3.9E-43 258.4 7.4 92 4-95 448-539 (1052)
4 1w7j_A Myosin VA; motor protei 100.0 1.3E-38 4.4E-43 252.9 7.2 91 4-95 429-519 (795)
5 1w9i_A Myosin II heavy chain; 100.0 2.4E-38 8.1E-43 250.5 7.1 91 5-95 447-539 (770)
6 4db1_A Myosin-7; S1DC, cardiac 100.0 2E-38 7E-43 251.3 6.4 91 4-95 453-544 (783)
7 1kk8_A Myosin heavy chain, str 100.0 3.7E-38 1.3E-42 251.3 6.1 91 4-95 452-543 (837)
8 2dfs_A Myosin-5A; myosin-V, in 100.0 9.9E-38 3.4E-42 253.8 6.5 91 4-95 429-519 (1080)
9 2ycu_A Non muscle myosin 2C, a 100.0 1.4E-37 4.7E-42 251.5 7.1 92 4-95 425-519 (995)
10 1g8x_A Myosin II heavy chain f 100.0 3E-37 1E-41 249.7 7.2 92 4-95 446-539 (1010)
11 1i84_S Smooth muscle myosin he 100.0 5.3E-37 1.8E-41 251.0 6.4 92 4-95 456-550 (1184)
12 1y4m_A HERV-FRD_6P24.1 proviru 65.5 1.5 5.1E-05 23.6 0.3 26 66-91 25-50 (53)
13 1mof_A Moloney murine leukemia 59.6 2 6.8E-05 23.2 0.1 27 65-91 26-52 (55)
14 3t5d_A Septin-7; GTP-binding p 42.0 32 0.0011 23.1 4.0 34 6-40 65-100 (274)
15 3def_A T7I23.11 protein; chlor 30.6 18 0.00061 24.2 1.2 14 7-20 85-98 (262)
16 4g2k_A General control protein 28.1 18 0.00063 22.5 0.8 27 66-92 78-104 (125)
17 1h65_A Chloroplast outer envel 26.7 23 0.00078 23.7 1.2 14 7-20 88-101 (270)
18 1srb_A Sarafotoxins precursor; 22.4 20 0.0007 16.1 0.2 9 83-91 5-13 (26)
19 2ldf_A Sarafotoxin-M, SRTX-M; 21.1 25 0.00084 15.8 0.3 9 83-91 5-13 (26)
20 3lxw_A GTPase IMAP family memb 20.4 39 0.0013 22.4 1.3 12 6-17 70-81 (247)
No 1
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=100.00 E-value=1.6e-39 Score=257.83 Aligned_cols=92 Identities=33% Similarity=0.578 Sum_probs=89.5
Q ss_pred ccceeeeeccCCccCCCcCchhhhHhhhhhhhhhhhHhhhhhhhhHhhhhccCceecccccCCchhHHHhhhcCCCcccc
Q psy163 4 VHHEERTMDVPSLTPAYVRLFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 83 (97)
Q Consensus 4 ~~~~i~ilD~~GFe~f~~n~feql~iN~~nE~l~~~~~~~~f~~~~~ey~~Egi~~~~i~~~dn~~~ldli~~~p~Gil~ 83 (97)
..++||||||||||+|+.||||||||||||||||++|++++|+.+|++|.+|||+|..++|.||++|+|||++||+|||+
T Consensus 444 ~~~~IGvLDI~GFE~f~~NsFEQlcINyaNEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~DN~~~idLie~kp~GIls 523 (784)
T 2v26_A 444 SSYFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILD 523 (784)
T ss_dssp CSEEEEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTCCCCCCCCCCCHHHHHHHHCTTTSHHH
T ss_pred ccceeeecccCCcccCCcCCHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCcccccccChHHHHHHHhhccccHHH
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhccccc
Q psy163 84 VLDDQAKFHKLW 95 (97)
Q Consensus 84 lLDeec~~Pk~~ 95 (97)
||||||++|+++
T Consensus 524 lLDEe~~~p~~t 535 (784)
T 2v26_A 524 ILDEENRLPQPS 535 (784)
T ss_dssp HHHHHHHSSSCC
T ss_pred HHHHHhcCCCCC
Confidence 999999999975
No 2
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=100.00 E-value=1.8e-39 Score=255.07 Aligned_cols=92 Identities=36% Similarity=0.525 Sum_probs=89.4
Q ss_pred ccceeeeeccCCccCCCcCchhhhHhhhhhhhhhhhHhhhhhhhhHhhhhccCceecccccCCchhHHHhhhcCCCcccc
Q psy163 4 VHHEERTMDVPSLTPAYVRLFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 83 (97)
Q Consensus 4 ~~~~i~ilD~~GFe~f~~n~feql~iN~~nE~l~~~~~~~~f~~~~~ey~~Egi~~~~i~~~dn~~~ldli~~~p~Gil~ 83 (97)
..++||||||||||+|+.||||||||||||||||++|++++|+.+|++|.+|||+|..++|.||++|+|||++||.|||+
T Consensus 378 ~~~~IGvLDI~GFE~f~~NsFEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~dN~~~idLie~kp~Gils 457 (697)
T 1lkx_A 378 KGPVIGILDIYGFEVFQNNSFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLIS 457 (697)
T ss_dssp CCCEEEEEECCCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCSCCCHHHHHTTSSSSSHHH
T ss_pred CceeEEeeccccccccCcCCHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCHHHHHHHhcccCChhh
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhccccc
Q psy163 84 VLDDQAKFHKLW 95 (97)
Q Consensus 84 lLDeec~~Pk~~ 95 (97)
||||||++|+++
T Consensus 458 lLDEec~~p~~t 469 (697)
T 1lkx_A 458 LLDEACLIAKST 469 (697)
T ss_dssp HHHHHHHSTTCC
T ss_pred hhHHhhCCCCCC
Confidence 999999999975
No 3
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=100.00 E-value=1.1e-38 Score=258.39 Aligned_cols=92 Identities=33% Similarity=0.578 Sum_probs=89.5
Q ss_pred ccceeeeeccCCccCCCcCchhhhHhhhhhhhhhhhHhhhhhhhhHhhhhccCceecccccCCchhHHHhhhcCCCcccc
Q psy163 4 VHHEERTMDVPSLTPAYVRLFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 83 (97)
Q Consensus 4 ~~~~i~ilD~~GFe~f~~n~feql~iN~~nE~l~~~~~~~~f~~~~~ey~~Egi~~~~i~~~dn~~~ldli~~~p~Gil~ 83 (97)
..++||||||||||+|+.|||||||||||||+||++|++++|+.+|++|.+|||+|..++|.||++|+|||++||.|||+
T Consensus 448 ~~~~IGILDI~GFE~f~~NsFEQLCINyaNEkLQq~Fn~~vF~~EqeeY~~EgI~w~~I~f~DN~~~idLie~kp~GIl~ 527 (1052)
T 4anj_A 448 SSYFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILD 527 (1052)
T ss_dssp CSEEEEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTCCCCCCCCCCCHHHHHHHHCTTTSHHH
T ss_pred ccceEEEEecCCCcccccCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCcccCCcCCcHHHHHHHHcCcccHHH
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhccccc
Q psy163 84 VLDDQAKFHKLW 95 (97)
Q Consensus 84 lLDeec~~Pk~~ 95 (97)
||||||++|+++
T Consensus 528 lLDEe~~~p~~t 539 (1052)
T 4anj_A 528 ILDEENRLPQPS 539 (1052)
T ss_dssp HHHHHHHSSSCC
T ss_pred HHHHHhcCCCCc
Confidence 999999999975
No 4
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=100.00 E-value=1.3e-38 Score=252.91 Aligned_cols=91 Identities=46% Similarity=0.717 Sum_probs=87.9
Q ss_pred ccceeeeeccCCccCCCcCchhhhHhhhhhhhhhhhHhhhhhhhhHhhhhccCceecccccCCchhHHHhhhcCCCcccc
Q psy163 4 VHHEERTMDVPSLTPAYVRLFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 83 (97)
Q Consensus 4 ~~~~i~ilD~~GFe~f~~n~feql~iN~~nE~l~~~~~~~~f~~~~~ey~~Egi~~~~i~~~dn~~~ldli~~~p~Gil~ 83 (97)
..++||||||||||+|+.||||||||||||||||++|++++|+.||+||.+|||+|..++|.||++|+|||++| .|||+
T Consensus 429 ~~~~IGvLDI~GFE~f~~NsFEQlcINyaNEkLQq~Fn~~~F~~EqeeY~~EgI~w~~i~f~DN~~~idLie~~-~GIls 507 (795)
T 1w7j_A 429 QHSFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVLD 507 (795)
T ss_dssp CSEEEEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCCCCCHHHHHHHHST-TSHHH
T ss_pred ccceEEeeccCcccccCcCCHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcCCcccccCccccHHHHHHHHhc-CCHHH
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999986 99999
Q ss_pred cchhhhhccccc
Q psy163 84 VLDDQAKFHKLW 95 (97)
Q Consensus 84 lLDeec~~Pk~~ 95 (97)
||||||++|+++
T Consensus 508 lLDEec~~p~~t 519 (795)
T 1w7j_A 508 LLDEECKMPKGS 519 (795)
T ss_dssp HHHHHHTSTTCC
T ss_pred hhhhhccCCCCC
Confidence 999999999975
No 5
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=100.00 E-value=2.4e-38 Score=250.54 Aligned_cols=91 Identities=43% Similarity=0.745 Sum_probs=87.7
Q ss_pred cceeeeeccCCccCCCcCchhhhHhhhhhhhhhhhHhhhhhhhhHhhhhccCceeccccc-CCchhHHHhhhcC-CCccc
Q psy163 5 HHEERTMDVPSLTPAYVRLFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGK-PNGLL 82 (97)
Q Consensus 5 ~~~i~ilD~~GFe~f~~n~feql~iN~~nE~l~~~~~~~~f~~~~~ey~~Egi~~~~i~~-~dn~~~ldli~~~-p~Gil 82 (97)
.++||||||||||+|+.||||||||||||||||++|++++|+.||++|.+|||+|..++| .||++|+|||+++ |+|||
T Consensus 447 ~~~IGvLDI~GFE~F~~NsFEQlCINyaNEkLQq~Fn~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idLiek~~p~Gil 526 (770)
T 1w9i_A 447 AYFIGVLDIYGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGIL 526 (770)
T ss_dssp SEEEEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCGGGGGHHHHHHHHCTTTTCHH
T ss_pred CCeeeeccCccccccccCCHHHHHHHhhHHHHHHHHHhhhhHHHHHHhhccCCCceeeccccCcHHHHHHHhCCCCCchh
Confidence 579999999999999999999999999999999999999999999999999999999999 5999999999974 99999
Q ss_pred ccchhhhhccccc
Q psy163 83 CVLDDQAKFHKLW 95 (97)
Q Consensus 83 ~lLDeec~~Pk~~ 95 (97)
+||||||++|+++
T Consensus 527 slLDEec~~p~~t 539 (770)
T 1w9i_A 527 ALLDEQSVFPNAT 539 (770)
T ss_dssp HHHHHHHSSSSCC
T ss_pred hhhhhhhCCCCCC
Confidence 9999999999975
No 6
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=100.00 E-value=2e-38 Score=251.30 Aligned_cols=91 Identities=41% Similarity=0.753 Sum_probs=86.2
Q ss_pred ccceeeeeccCCccCCCcCchhhhHhhhhhhhhhhhHhhhhhhhhHhhhhccCceeccccc-CCchhHHHhhhcCCCccc
Q psy163 4 VHHEERTMDVPSLTPAYVRLFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLL 82 (97)
Q Consensus 4 ~~~~i~ilD~~GFe~f~~n~feql~iN~~nE~l~~~~~~~~f~~~~~ey~~Egi~~~~i~~-~dn~~~ldli~~~p~Gil 82 (97)
..++||||||||||+|+.||||||||||||||||++|++++|+.+|++|.+|||+|..++| .||++|+|||++ |+|||
T Consensus 453 ~~~~IGvLDI~GFE~f~~NsFEQlCINyaNEkLQq~Fn~~~F~~EqeeY~~EgI~w~~i~f~~Dn~~~idLiek-p~Gil 531 (783)
T 4db1_A 453 RQYFIGVLDIAGFEIFDFNSFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWTFIDFGMDLQACIDLIEK-PMGIM 531 (783)
T ss_dssp CSEEEEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCGGGGGHHHHHHHHS-TTSHH
T ss_pred CCceEEEeccccccccccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcccccccCChHHHHHHHhC-CCchH
Confidence 3569999999999999999999999999999999999999999999999999999999999 599999999995 89999
Q ss_pred ccchhhhhccccc
Q psy163 83 CVLDDQAKFHKLW 95 (97)
Q Consensus 83 ~lLDeec~~Pk~~ 95 (97)
+||||||++|+++
T Consensus 532 ~lLDEec~~p~~t 544 (783)
T 4db1_A 532 SILEEECMFPKAT 544 (783)
T ss_dssp HHHCC-TTCTTCC
T ss_pred hhhhHHhcCCCCC
Confidence 9999999999875
No 7
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=100.00 E-value=3.7e-38 Score=251.25 Aligned_cols=91 Identities=43% Similarity=0.777 Sum_probs=87.5
Q ss_pred ccceeeeeccCCccCCCcCchhhhHhhhhhhhhhhhHhhhhhhhhHhhhhccCceeccccc-CCchhHHHhhhcCCCccc
Q psy163 4 VHHEERTMDVPSLTPAYVRLFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLL 82 (97)
Q Consensus 4 ~~~~i~ilD~~GFe~f~~n~feql~iN~~nE~l~~~~~~~~f~~~~~ey~~Egi~~~~i~~-~dn~~~ldli~~~p~Gil 82 (97)
..++||||||||||+|+.|||||||||||||+||++|++++|+.||+||.+|||+|..++| .||++|+|||++ |.|||
T Consensus 452 ~~~~IGvLDI~GFE~f~~NsFEQlcINyaNEkLQq~Fn~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idLiek-p~GIl 530 (837)
T 1kk8_A 452 RNYYIGVLDIAGFEIFDFNSFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIEK-PMGIL 530 (837)
T ss_dssp CCEEEEEEECCCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSCCCCHHHHHHHHHHHS-TTSHH
T ss_pred CcceEEEEecCCccccccccHHHHHHHHhhHHHHHHHHHhhhHHHHHHhhhcCCceeecccccCHHHHHHHHhc-CCcHH
Confidence 4579999999999999999999999999999999999999999999999999999999999 599999999996 99999
Q ss_pred ccchhhhhccccc
Q psy163 83 CVLDDQAKFHKLW 95 (97)
Q Consensus 83 ~lLDeec~~Pk~~ 95 (97)
+||||||++|+++
T Consensus 531 slLDEec~~p~~t 543 (837)
T 1kk8_A 531 SILEEECMFPKAD 543 (837)
T ss_dssp HHHHHHTTCTTCC
T ss_pred HHHHHHhcCCCCC
Confidence 9999999999975
No 8
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=100.00 E-value=9.9e-38 Score=253.79 Aligned_cols=91 Identities=46% Similarity=0.717 Sum_probs=87.9
Q ss_pred ccceeeeeccCCccCCCcCchhhhHhhhhhhhhhhhHhhhhhhhhHhhhhccCceecccccCCchhHHHhhhcCCCcccc
Q psy163 4 VHHEERTMDVPSLTPAYVRLFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 83 (97)
Q Consensus 4 ~~~~i~ilD~~GFe~f~~n~feql~iN~~nE~l~~~~~~~~f~~~~~ey~~Egi~~~~i~~~dn~~~ldli~~~p~Gil~ 83 (97)
..++||||||||||+|+.|||||||||||||+||++|++++|+.+|++|.+|||+|..++|.||++|+|||++| .|||+
T Consensus 429 ~~~~IgvLDI~GFE~f~~NsFEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~dn~~~idlie~~-~Gil~ 507 (1080)
T 2dfs_A 429 QHSFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVLD 507 (1080)
T ss_dssp CCEEEEEEEECCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCCCCCCCHHHHHHHHST-TSHHH
T ss_pred cCceEEeeccCCccccCcCCHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhcCCccccccccccHHHHHHHhcC-Cceee
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999976 99999
Q ss_pred cchhhhhccccc
Q psy163 84 VLDDQAKFHKLW 95 (97)
Q Consensus 84 lLDeec~~Pk~~ 95 (97)
||||||++|+++
T Consensus 508 lLdee~~~p~~t 519 (1080)
T 2dfs_A 508 LLDEECKMPKGS 519 (1080)
T ss_dssp HHHHHTTSTTCC
T ss_pred eccccccCCCCC
Confidence 999999999975
No 9
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=100.00 E-value=1.4e-37 Score=251.47 Aligned_cols=92 Identities=41% Similarity=0.711 Sum_probs=88.4
Q ss_pred ccceeeeeccCCccCCCcCchhhhHhhhhhhhhhhhHhhhhhhhhHhhhhccCceeccccc-CCchhHHHhhhc--CCCc
Q psy163 4 VHHEERTMDVPSLTPAYVRLFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG--KPNG 80 (97)
Q Consensus 4 ~~~~i~ilD~~GFe~f~~n~feql~iN~~nE~l~~~~~~~~f~~~~~ey~~Egi~~~~i~~-~dn~~~ldli~~--~p~G 80 (97)
..++||||||||||+|+.|||||||||||||+||++|++++|+.+|++|.+|||+|..++| .||++|+|||++ +|.|
T Consensus 425 ~~~~IgvLDI~GFE~f~~NsfEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idlie~~~~p~G 504 (995)
T 2ycu_A 425 GASFLGILDIAGFEIFQLNSFEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIPWTFLDFGLDLQPCIDLIERPANPPG 504 (995)
T ss_dssp CSEEEEEEECCCBCCCSSBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCSCCCHHHHHHHHCCSSSCC
T ss_pred ccceEEEeccccccccccchHHHHHHHhhHHHHHHHHHHhhhHHHHHHHhccCCCccccccccChHHHHHHHhccCCCCc
Confidence 4679999999999999999999999999999999999999999999999999999999999 699999999997 4899
Q ss_pred ccccchhhhhccccc
Q psy163 81 LLCVLDDQAKFHKLW 95 (97)
Q Consensus 81 il~lLDeec~~Pk~~ 95 (97)
||+||||||++|+++
T Consensus 505 il~lLdee~~~p~~t 519 (995)
T 2ycu_A 505 LLALLDEECWFPKAT 519 (995)
T ss_dssp HHHHHHHSSSSTTCC
T ss_pred hhhhhHHHhcCCCCc
Confidence 999999999999875
No 10
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=100.00 E-value=3e-37 Score=249.67 Aligned_cols=92 Identities=42% Similarity=0.735 Sum_probs=88.1
Q ss_pred ccceeeeeccCCccCCCcCchhhhHhhhhhhhhhhhHhhhhhhhhHhhhhccCceeccccc-CCchhHHHhhhc-CCCcc
Q psy163 4 VHHEERTMDVPSLTPAYVRLFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG-KPNGL 81 (97)
Q Consensus 4 ~~~~i~ilD~~GFe~f~~n~feql~iN~~nE~l~~~~~~~~f~~~~~ey~~Egi~~~~i~~-~dn~~~ldli~~-~p~Gi 81 (97)
..++||||||||||+|+.|||||||||||||+||++|++++|+.+|++|.+|||+|..++| .||++|+|||++ +|+||
T Consensus 446 ~~~~IgvLDI~GFE~f~~NsfEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idlie~~~~~Gi 525 (1010)
T 1g8x_A 446 KAYFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGI 525 (1010)
T ss_dssp CSEEEEEEECCCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCCCSHHHHHHHHCTTTTCH
T ss_pred cCceeeeccCcccccCCcCcHHHHHHHhhhHHHHHHHHHHhhHHHHHHhhccCCCccccccccChHHHHHHHhcCCCCee
Confidence 3569999999999999999999999999999999999999999999999999999999999 599999999998 49999
Q ss_pred cccchhhhhccccc
Q psy163 82 LCVLDDQAKFHKLW 95 (97)
Q Consensus 82 l~lLDeec~~Pk~~ 95 (97)
|+||||||++|+++
T Consensus 526 l~lLdee~~~p~~t 539 (1010)
T 1g8x_A 526 LALLDEQSVFPNAT 539 (1010)
T ss_dssp HHHHHHHTTSSSCC
T ss_pred ehhhhHHhCCCCCC
Confidence 99999999999975
No 11
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=100.00 E-value=5.3e-37 Score=250.99 Aligned_cols=92 Identities=41% Similarity=0.712 Sum_probs=86.4
Q ss_pred ccceeeeeccCCccCCCcCchhhhHhhhhhhhhhhhHhhhhhhhhHhhhhccCceeccccc-CCchhHHHhhhcC--CCc
Q psy163 4 VHHEERTMDVPSLTPAYVRLFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGK--PNG 80 (97)
Q Consensus 4 ~~~~i~ilD~~GFe~f~~n~feql~iN~~nE~l~~~~~~~~f~~~~~ey~~Egi~~~~i~~-~dn~~~ldli~~~--p~G 80 (97)
..++||||||||||+|+.|||||||||||||+||++|++++|+.+|++|.+|||.|..++| .||++|+|||+++ |+|
T Consensus 456 ~~~~IgvLDi~GFE~f~~NsfeQlciNy~nEkLq~~f~~~~f~~eq~ey~~Egi~~~~i~~~~dn~~~~~lie~~~~~~G 535 (1184)
T 1i84_S 456 GASFLGILDIAGFEIFEINSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNPPG 535 (1184)
T ss_dssp -CEEEEEEECCCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCSCCCCCCCCCCHHHHHTTSCCSSSCC
T ss_pred CcceEEEeecCCcCCCCcchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCccccccCCCcHHHHHHHhCCCCCCC
Confidence 4579999999999999999999999999999999999999999999999999999999999 5999999999962 349
Q ss_pred ccccchhhhhccccc
Q psy163 81 LLCVLDDQAKFHKLW 95 (97)
Q Consensus 81 il~lLDeec~~Pk~~ 95 (97)
||+||||||++|+++
T Consensus 536 il~lLdee~~~p~~t 550 (1184)
T 1i84_S 536 VLALLDEECWFPKAT 550 (1184)
T ss_dssp HHHHHHHTTSCTTCC
T ss_pred chhhhhhhhCCCCCC
Confidence 999999999999975
No 12
>1y4m_A HERV-FRD_6P24.1 provirus ancestral ENV polyprotei; coat protein, membrane fusion, endogenous retrovirus, membra protein; 1.60A {Homo sapiens} SCOP: h.3.2.1
Probab=65.48 E-value=1.5 Score=23.55 Aligned_cols=26 Identities=23% Similarity=0.438 Sum_probs=22.9
Q ss_pred CchhHHHhhhcCCCcccccchhhhhc
Q psy163 66 DNTLCLQLVEGKPNGLLCVLDDQAKF 91 (97)
Q Consensus 66 dn~~~ldli~~~p~Gil~lLDeec~~ 91 (97)
.|...+|++..+..|+=..|.|+|.|
T Consensus 25 QNRraLDlL~a~~GG~C~~l~e~CC~ 50 (53)
T 1y4m_A 25 QNRRGLDMLTAAQGGICLALDEKCCF 50 (53)
T ss_dssp HHHHHHHHHTGGGTSHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHhCCccHHhcCchhc
Confidence 57788999998889999999999976
No 13
>1mof_A Moloney murine leukemia virus P15; glycoprotein, coat protein, polyprotein, transmembrane, SIGN protein; 1.70A {Moloney murine leukemia virus} SCOP: h.3.2.1
Probab=59.58 E-value=2 Score=23.23 Aligned_cols=27 Identities=30% Similarity=0.364 Sum_probs=23.2
Q ss_pred CCchhHHHhhhcCCCcccccchhhhhc
Q psy163 65 SDNTLCLQLVEGKPNGLLCVLDDQAKF 91 (97)
Q Consensus 65 ~dn~~~ldli~~~p~Gil~lLDeec~~ 91 (97)
..|...+|++..+..|+=..|.|+|.|
T Consensus 26 lQNRraLD~L~a~~GG~C~~l~e~CCf 52 (55)
T 1mof_A 26 LQNRRGLDLLFLKEGGLCAALKEECAF 52 (55)
T ss_dssp HHHHHHHHHHTGGGTCHHHHHTSCCCC
T ss_pred HHHHHHHHHHHHHhCCccHHHcCchhc
Confidence 357788999998889999999999976
No 14
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=42.02 E-value=32 Score=23.09 Aligned_cols=34 Identities=18% Similarity=0.328 Sum_probs=19.6
Q ss_pred ceeeeeccCCccCCCcC--chhhhHhhhhhhhhhhhH
Q psy163 6 HEERTMDVPSLTPAYVR--LFEQLCINYANEHLQYYF 40 (97)
Q Consensus 6 ~~i~ilD~~GFe~f~~n--~feql~iN~~nE~l~~~~ 40 (97)
..+.|+|+|||..+..+ .+. -.+.|..++...++
T Consensus 65 ~~l~liDTpG~~d~~~~~~~~~-~i~~~i~~~~~~~l 100 (274)
T 3t5d_A 65 LLLTIVDTPGFGDAVDNSNCWQ-PVIDYIDSKFEDYL 100 (274)
T ss_dssp EEEEEEECCCCSCCSCCTTTTH-HHHHHHHHHHHHHH
T ss_pred EEEEEEECCCccccccchhhHH-HHHHHHHHHHHHHH
Confidence 37899999999755333 232 23344444444443
No 15
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=30.58 E-value=18 Score=24.21 Aligned_cols=14 Identities=29% Similarity=0.335 Sum_probs=11.8
Q ss_pred eeeeeccCCccCCC
Q psy163 7 EERTMDVPSLTPAY 20 (97)
Q Consensus 7 ~i~ilD~~GFe~f~ 20 (97)
.+.|+|+||++.+.
T Consensus 85 ~l~liDTpG~~~~~ 98 (262)
T 3def_A 85 TINIIDTPGLVEAG 98 (262)
T ss_dssp EEEEEECCCSEETT
T ss_pred eEEEEECCCCCCcc
Confidence 68999999998663
No 16
>4g2k_A General control protein GCN4, envelope glycoprote chimera; GP2-GCN4 fusion, viral protein; 1.90A {Saccharomyces cerevisiae}
Probab=28.14 E-value=18 Score=22.47 Aligned_cols=27 Identities=15% Similarity=0.113 Sum_probs=23.0
Q ss_pred CchhHHHhhhcCCCcccccchhhhhcc
Q psy163 66 DNTLCLQLVEGKPNGLLCVLDDQAKFH 92 (97)
Q Consensus 66 dn~~~ldli~~~p~Gil~lLDeec~~P 92 (97)
-|...+|++.....|+=..|.++|.|-
T Consensus 78 QNRraLD~Lla~qGG~C~~l~e~CCfy 104 (125)
T 4g2k_A 78 INRHAIDFLLTRWGGTCKVLGPDCSIG 104 (125)
T ss_dssp HHHHHHHHHHGGGTCHHHHHCGGGGCC
T ss_pred HHHHHHHHHHHHcCCcHHHhcccceee
Confidence 467788998888899999999999874
No 17
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=26.72 E-value=23 Score=23.73 Aligned_cols=14 Identities=21% Similarity=0.273 Sum_probs=11.7
Q ss_pred eeeeeccCCccCCC
Q psy163 7 EERTMDVPSLTPAY 20 (97)
Q Consensus 7 ~i~ilD~~GFe~f~ 20 (97)
.+.|+|+||++.+.
T Consensus 88 ~l~iiDTpG~~~~~ 101 (270)
T 1h65_A 88 TLNIIDTPGLIEGG 101 (270)
T ss_dssp EEEEEECCCSEETT
T ss_pred EEEEEECCCCCCCc
Confidence 58999999998654
No 18
>1srb_A Sarafotoxins precursor; NMR {Atractaspis microlepidota andersoni} SCOP: j.28.1.1
Probab=22.38 E-value=20 Score=16.13 Aligned_cols=9 Identities=11% Similarity=0.279 Sum_probs=6.7
Q ss_pred ccchhhhhc
Q psy163 83 CVLDDQAKF 91 (97)
Q Consensus 83 ~lLDeec~~ 91 (97)
+.+|.||.+
T Consensus 5 s~~DkEC~Y 13 (26)
T 1srb_A 5 DMTDKECLY 13 (26)
T ss_dssp SSCSHHHHH
T ss_pred cccccceEE
Confidence 578888863
No 19
>2ldf_A Sarafotoxin-M, SRTX-M; endothelin-like peptide; NMR {Atractaspis microlepidota}
Probab=21.11 E-value=25 Score=15.83 Aligned_cols=9 Identities=11% Similarity=0.298 Sum_probs=6.7
Q ss_pred ccchhhhhc
Q psy163 83 CVLDDQAKF 91 (97)
Q Consensus 83 ~lLDeec~~ 91 (97)
+.+|.||.+
T Consensus 5 s~~DkEC~Y 13 (26)
T 2ldf_A 5 DINDKECMY 13 (26)
T ss_dssp SSCHHHHHH
T ss_pred cccccceEE
Confidence 578888863
No 20
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=20.42 E-value=39 Score=22.37 Aligned_cols=12 Identities=17% Similarity=0.351 Sum_probs=10.0
Q ss_pred ceeeeeccCCcc
Q psy163 6 HEERTMDVPSLT 17 (97)
Q Consensus 6 ~~i~ilD~~GFe 17 (97)
..+.|+|+||+.
T Consensus 70 ~~i~liDTPG~~ 81 (247)
T 3lxw_A 70 CHVEVVDTPDIF 81 (247)
T ss_dssp EEEEEEECCSCS
T ss_pred cEEEEEECCCCC
Confidence 468899999984
Done!