RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy163
(97 letters)
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
discoideum, class-I myosin MyoE [TaxId: 44689]}
Length = 684
Score = 75.1 bits (184), Expect = 4e-18
Identities = 33/83 (39%), Positives = 48/83 (57%)
Query: 11 MDVPSLTPAYVRLFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLC 70
+D+ FEQL IN+ NE LQ F + + EQEEY +EGI W++IE+ +N
Sbjct: 377 LDIYGFEVFQNNSFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPI 436
Query: 71 LQLVEGKPNGLLCVLDDQAKFHK 93
+L+E KP GL+ +LD+ K
Sbjct: 437 CELIEKKPIGLISLLDEACLIAK 459
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 794
Score = 71.7 bits (175), Expect = 9e-17
Identities = 33/82 (40%), Positives = 46/82 (56%)
Query: 11 MDVPSLTPAYVRLFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLC 70
+D+ FEQLCIN+ NE LQ +FN H+F EQEEY KEGI W I+F +
Sbjct: 413 LDIAGFEIFDFNSFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWEFIDFGMDLAA 472
Query: 71 LQLVEGKPNGLLCVLDDQAKFH 92
+ KP G+ +L+++ F
Sbjct: 473 CIELIEKPMGIFSILEEECMFP 494
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
scallop (Aequipecten irradians) [TaxId: 31199]}
Length = 789
Score = 69.7 bits (170), Expect = 4e-16
Identities = 35/82 (42%), Positives = 47/82 (57%)
Query: 11 MDVPSLTPAYVRLFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLC 70
+D+ FEQLCINY NE LQ +FN H+F EQEEY KEGI W I+F +
Sbjct: 411 LDIAGFEIFDFNSFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQM 470
Query: 71 LQLVEGKPNGLLCVLDDQAKFH 92
+ KP G+L +L+++ F
Sbjct: 471 CIDLIEKPMGILSILEEECMFP 492
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 710
Score = 69.8 bits (170), Expect = 4e-16
Identities = 37/85 (43%), Positives = 50/85 (58%), Gaps = 3/85 (3%)
Query: 11 MDVPSLTPAYVRLFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTL 69
+D+ + FEQLCINY NE LQ FN +F EQEEY +EGI W I+F D
Sbjct: 385 LDIAGFEIFEINSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQP 444
Query: 70 CLQLVEG--KPNGLLCVLDDQAKFH 92
C++L+E P G+L +LD++ F
Sbjct: 445 CIELIERPTNPPGVLALLDEECWFP 469
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
(Gallus gallus), Va isoform [TaxId: 9031]}
Length = 730
Score = 66.7 bits (162), Expect = 4e-15
Identities = 41/83 (49%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
Query: 11 MDVPSLTPAYVRLFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLC 70
+D+ + FEQ CINYANE LQ FN HVF+ EQEEY KE I W I+F DN C
Sbjct: 374 LDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPC 433
Query: 71 LQLVEGKPNGLLCVLDDQAKFHK 93
+ L+E K G+L +LD++ K K
Sbjct: 434 INLIEAK-MGVLDLLDEECKMPK 455
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
{Dictyostelium discoideum [TaxId: 44689]}
Length = 712
Score = 64.7 bits (157), Expect = 2e-14
Identities = 39/84 (46%), Positives = 54/84 (64%), Gaps = 2/84 (2%)
Query: 11 MDVPSLTPAYVRLFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTL 69
+D+ V FEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+
Sbjct: 406 LDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQA 465
Query: 70 CLQLVEG-KPNGLLCVLDDQAKFH 92
+ L++G +P G+L +LD+Q+ F
Sbjct: 466 TIDLIDGRQPPGILALLDEQSVFP 489
>d3boea1 c.154.1.1 (A:224-432) Cadmium-specific carbonic anhydrase
CdCA1 {Thalassiosira weissflogii [TaxId: 67004]}
Length = 209
Score = 25.3 bits (55), Expect = 1.2
Identities = 9/35 (25%), Positives = 18/35 (51%)
Query: 59 WRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKFHK 93
W +D ++ QLV+ +P G+L +D + +
Sbjct: 15 WDAEIVTDASMAGQLVDVRPEGILKCVDGRGSDNT 49
>d2q78a1 d.38.1.7 (A:1-130) Uncharacterized protein TM0581
{Thermotoga maritima [TaxId: 2336]}
Length = 130
Score = 25.1 bits (55), Expect = 1.3
Identities = 4/26 (15%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 12 DVPSL-TPAYVRLFEQLCINYANEHL 36
D+ + T A + + ++ + +L
Sbjct: 32 DLHLVATSALIGVVHRVSYELLSRYL 57
>d1e93a_ e.5.1.1 (A:) Catalase I {Proteus mirabilis [TaxId: 584]}
Length = 476
Score = 24.5 bits (53), Expect = 2.6
Identities = 8/39 (20%), Positives = 10/39 (25%)
Query: 29 INYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDN 67
I Y + Q F+ W H E D
Sbjct: 377 ITYEPNSGGVFQEQPDFKEPPLSIEGAADHWNHREDEDY 415
>d1kwfa_ a.102.1.2 (A:) CelA cellulase {Clostridium thermocellum
[TaxId: 1515]}
Length = 363
Score = 24.2 bits (52), Expect = 3.2
Identities = 11/70 (15%), Positives = 23/70 (32%), Gaps = 6/70 (8%)
Query: 31 YANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC--VLDDQ 88
L+ + + R ++ +T + +G GLL ++Q
Sbjct: 22 EVTAMLKAEWEDWKSKRITSNGAGGYKR---VQRDASTNYDTVSQGMGYGLLLAVCFNEQ 78
Query: 89 AKFHKLW-WY 97
A F L+ +
Sbjct: 79 ALFDDLYRYV 88
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.138 0.457
Gapped
Lambda K H
0.267 0.0592 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 386,880
Number of extensions: 16029
Number of successful extensions: 61
Number of sequences better than 10.0: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 16
Length of query: 97
Length of database: 2,407,596
Length adjustment: 59
Effective length of query: 38
Effective length of database: 1,597,526
Effective search space: 60705988
Effective search space used: 60705988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.2 bits)