BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1630
(149 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CQK|A Chain A, Solution Structure Of The La Domain Of C-Mpl Binding
Protein
Length = 101
Score = 106 bits (264), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 48/68 (70%), Positives = 57/68 (83%)
Query: 14 RENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKV 73
RENL+ D YL+SQMD+DQ++PIWTVAN ++KKLT D LI EVLR SP VQVDE+G KV
Sbjct: 28 RENLSKDLYLISQMDSDQFIPIWTVANMEEIKKLTTDPDLILEVLRSSPMVQVDEKGEKV 87
Query: 74 RPNHKRCI 81
RP+HKRCI
Sbjct: 88 RPSHKRCI 95
>pdb|2VOD|A Chain A, Crystal Structure Of N-Terminal Domains Of Human La
Protein Complexed With Rna Oligomer Auauuuu
pdb|2VOD|B Chain B, Crystal Structure Of N-Terminal Domains Of Human La
Protein Complexed With Rna Oligomer Auauuuu
pdb|2VON|A Chain A, Crystal Structure Of N-Terminal Domains Of Human La
Protein Complexed With Rna Oligomer Auaauuu
pdb|2VON|B Chain B, Crystal Structure Of N-Terminal Domains Of Human La
Protein Complexed With Rna Oligomer Auaauuu
pdb|2VOO|A Chain A, Crystal Structure Of N-Terminal Domains Of Human La
Protein Complexed With Rna Oligomer Uuuuuuuu
pdb|2VOO|B Chain B, Crystal Structure Of N-Terminal Domains Of Human La
Protein Complexed With Rna Oligomer Uuuuuuuu
pdb|2VOP|A Chain A, Crystal Structure Of N-Terminal Domains Of Human La
Protein Complexed With Rna Oligomer Auuuu
Length = 193
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 62/138 (44%), Gaps = 22/138 (15%)
Query: 16 NLANDAYLLSQMDNDQ-YVPIWTVANFNQVKKLTKDIKLITEVLRESPN--VQVDEEGIK 72
NL D +L Q+ D+ +VP+ + FN++ +LT D +I E L +S +++ E+ K
Sbjct: 28 NLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTDFNVIVEALSKSKAELMEISEDKTK 87
Query: 73 VRPNHKRCI---------------VILREIPDSTPLEEIRGLFSGKSCPRFI----SCEF 113
+R + + + V ++ P L++I+ K I +
Sbjct: 88 IRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHK 147
Query: 114 AHNNSWYITFENDEDAQK 131
A S ++ F++ E A+K
Sbjct: 148 AFKGSIFVVFDSIESAKK 165
>pdb|1S7A|A Chain A, Nmr Structure Of The La Motif Of Human La Protein
Length = 103
Score = 35.0 bits (79), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 16 NLANDAYLLSQMDNDQ-YVPIWTVANFNQVKKLTKDIKLITEVLRESPN--VQVDEEGIK 72
NL D +L Q+ D+ +VP+ + FN++ +LT D +I E L +S +++ E+ K
Sbjct: 29 NLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTDFNVIVEALSKSKAELMEISEDKTK 88
Query: 73 VR 74
+R
Sbjct: 89 IR 90
>pdb|1YTY|A Chain A, Structural Basis For Recognition Of Uuuoh 3'-Terminii Of
Nascent Rna Pol Iii Transcripts By La Autoantigen
pdb|1YTY|B Chain B, Structural Basis For Recognition Of Uuuoh 3'-Terminii Of
Nascent Rna Pol Iii Transcripts By La Autoantigen
Length = 194
Score = 33.9 bits (76), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 60/138 (43%), Gaps = 22/138 (15%)
Query: 16 NLANDAYLLSQMDNDQ-YVPIWTVANFNQVKKLTKDIKLITEVLRESPN--VQVDEEGIK 72
NL D +L Q+ D+ +VP+ FN++ +LT D +I E L +S ++ E+ K
Sbjct: 29 NLPRDKFLKEQIKLDEGWVPLEIXIKFNRLNRLTTDFNVIVEALSKSKAELXEISEDKTK 88
Query: 73 VRPNHKRCI---------------VILREIPDSTPLEEIRGLFSGKSCPRFI----SCEF 113
+R + + + V ++ P L++I+ K I +
Sbjct: 89 IRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQXRRTLHK 148
Query: 114 AHNNSWYITFENDEDAQK 131
A S ++ F++ E A+K
Sbjct: 149 AFKGSIFVVFDSIESAKK 166
>pdb|1ZH5|A Chain A, Structural Basis For Recognition Of Uuuoh 3'-Terminii Of
Nascent Rna Pol Iii Transcripts By La Autoantigen
pdb|1ZH5|B Chain B, Structural Basis For Recognition Of Uuuoh 3'-Terminii Of
Nascent Rna Pol Iii Transcripts By La Autoantigen
Length = 195
Score = 33.9 bits (76), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 60/138 (43%), Gaps = 22/138 (15%)
Query: 16 NLANDAYLLSQMDNDQ-YVPIWTVANFNQVKKLTKDIKLITEVLRESPN--VQVDEEGIK 72
NL D +L Q+ D+ +VP+ FN++ +LT D +I E L +S ++ E+ K
Sbjct: 30 NLPRDKFLKEQIKLDEGWVPLEIXIKFNRLNRLTTDFNVIVEALSKSKAELXEISEDKTK 89
Query: 73 VRPNHKRCI---------------VILREIPDSTPLEEIRGLFSGKSCPRFI----SCEF 113
+R + + + V ++ P L++I+ K I +
Sbjct: 90 IRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQXRRTLHK 149
Query: 114 AHNNSWYITFENDEDAQK 131
A S ++ F++ E A+K
Sbjct: 150 AFKGSIFVVFDSIESAKK 167
>pdb|1S29|A Chain A, La Autoantigen N-Terminal Domain
Length = 92
Score = 33.5 bits (75), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 16 NLANDAYLLSQM--DNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKV 73
N+ D +L + + + +V + T+ F +V +T D+K + E +R S + + E+G+ V
Sbjct: 26 NVQRDIFLKGKXAENAEGFVSLETLLTFKRVNSVTTDVKEVVEAIRPSEKLVLSEDGLXV 85
Query: 74 R 74
R
Sbjct: 86 R 86
>pdb|2CPH|A Chain A, Solution Structure Of The C-Terminal Rna Recognition Motif
Of Hypothetical Rna-Binding Protein Rbm19
Length = 107
Score = 30.4 bits (67), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Query: 82 VILREIPDSTPLEEIRGLFSGKS------CPRFISCEFAHNNSWYITFENDEDAQKAYRY 135
+++R IP EIR LFS P+ ++ AH ++ F +DA+KA+
Sbjct: 18 ILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNA 77
Query: 136 L 136
L
Sbjct: 78 L 78
>pdb|3ETS|A Chain A, Crystal Structure Of A Bacterial Arylsulfate
Sulfotransferase Catalytic Intermediate With 4-
Methylumbelliferone Bound In The Active Site
pdb|3ETS|B Chain B, Crystal Structure Of A Bacterial Arylsulfate
Sulfotransferase Catalytic Intermediate With 4-
Methylumbelliferone Bound In The Active Site
pdb|3ETT|A Chain A, Crystal Structure Of A Bacterial Arylsulfate
Sulfotransferase Catalytic Intermediate With
4-Nitrophenol Bound In The Active Site
pdb|3ETT|B Chain B, Crystal Structure Of A Bacterial Arylsulfate
Sulfotransferase Catalytic Intermediate With
4-Nitrophenol Bound In The Active Site
Length = 571
Score = 29.3 bits (64), Expect = 0.95, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 37 TVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKVRPNH 77
TV N++ TK++K+ +VL + PN Q + VRP
Sbjct: 529 TVGKLNEIDYKTKEVKVEIDVLSDKPN-QTHYRALLVRPQQ 568
>pdb|3ELQ|A Chain A, Crystal Structure Of A Bacterial Arylsulfate
Sulfotransferase
pdb|3ELQ|B Chain B, Crystal Structure Of A Bacterial Arylsulfate
Sulfotransferase
Length = 571
Score = 29.3 bits (64), Expect = 0.95, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 37 TVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKVRPNH 77
TV N++ TK++K+ +VL + PN Q + VRP
Sbjct: 529 TVGKLNEIDYKTKEVKVEIDVLSDKPN-QTHYRALLVRPQQ 568
>pdb|2JCM|A Chain A, Crystal Structure Of Human Cytosolic 5'-Nucleotidase Ii In
Complex With Beryllium Trifluoride
pdb|2XJF|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic 5'-
Nucleotidase Ii With A Covalently Modified Asn52
Length = 555
Score = 27.3 bits (59), Expect = 3.3, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 11/59 (18%)
Query: 84 LREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVRE 142
L +P++ L + F+ +CPR+ SCE T D D +YR + +DVR+
Sbjct: 175 LFNLPETYLLACLVDFFT--NCPRYTSCE---------TGFKDGDLFMSYRSMFQDVRD 222
>pdb|2XJE|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic
5'-Nucleotidase Ii In Complex With Uridine
5'-Monophosphate And Adenosine Triphosphate
Length = 555
Score = 27.3 bits (59), Expect = 3.5, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 11/59 (18%)
Query: 84 LREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVRE 142
L +P++ L + F+ +CPR+ SCE T D D +YR + +DVR+
Sbjct: 175 LFNLPETYLLACLVDFFT--NCPRYTSCE---------TGFKDGDLFMSYRSMFQDVRD 222
>pdb|2J2C|A Chain A, Crystal Structure Of Human Cytosolic 5'-Nucleotidase Ii
(Nt5c2, Cn-Ii)
pdb|2JC9|A Chain A, Crystal Structure Of Human Cytosolic 5'-Nucleotidase Ii In
Complex With Adenosine
pdb|4H4B|A Chain A, Human Cytosolic 5'-nucleotidase Ii In Complex With
Anthraquinone-2,6- Disulfonic Acid
Length = 555
Score = 27.3 bits (59), Expect = 3.5, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 11/59 (18%)
Query: 84 LREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVRE 142
L +P++ L + F+ +CPR+ SCE T D D +YR + +DVR+
Sbjct: 175 LFNLPETYLLACLVDFFT--NCPRYTSCE---------TGFKDGDLFMSYRSMFQDVRD 222
>pdb|2XCV|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic 5'-
Nucleotidase Ii In Complex With Inosine Monophosphate
And 2,3-Bisphosphoglycerate
pdb|2XCW|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic
5'-Nucleotidase Ii In Complex With Inosine Monophosphate
And Atp
pdb|2XCX|A Chain A, Crystal Structure Of The Apoform Of The D52n Variant Of
Cytosolic 5'- Nucleotidase Ii
pdb|2XJB|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic
5'-Nucleotidase Ii In Complex With Deoxyguanosine
Monophosphate And Deoxyadenosine Triphosphate
pdb|2XJC|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic
5'-Nucleotidase Ii In Complex With Guanosine
Monophosphate And Diadenosine Tetraphosphate
pdb|2XJD|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic 5'-
Nucleotidase Ii In Complex With Inorganic Phosphate And
Deoxyadenosine Triphosphate
Length = 554
Score = 27.3 bits (59), Expect = 3.6, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 11/59 (18%)
Query: 84 LREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVRE 142
L +P++ L + F+ +CPR+ SCE T D D +YR + +DVR+
Sbjct: 174 LFNLPETYLLACLVDFFT--NCPRYTSCE---------TGFKDGDLFMSYRSMFQDVRD 221
>pdb|3TKT|A Chain A, Crystal Structure Of Cyp108d1 From Novosphingobium
Aromaticivorans Dsm12444
Length = 450
Score = 26.9 bits (58), Expect = 4.7, Method: Composition-based stats.
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 29 NDQYVPIWTVANFNQVKKLTKD 50
+D++ P W V++F+ V K +KD
Sbjct: 67 DDEHEPFWLVSSFDGVMKASKD 88
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,581,202
Number of Sequences: 62578
Number of extensions: 180624
Number of successful extensions: 403
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 392
Number of HSP's gapped (non-prelim): 19
length of query: 149
length of database: 14,973,337
effective HSP length: 90
effective length of query: 59
effective length of database: 9,341,317
effective search space: 551137703
effective search space used: 551137703
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)