BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1630
(149 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9I7T7|Y1505_DROME La-related protein CG11505 OS=Drosophila melanogaster GN=CG11505
PE=1 SV=2
Length = 1531
Score = 231 bits (590), Expect = 9e-61, Method: Composition-based stats.
Identities = 102/133 (76%), Positives = 121/133 (90%)
Query: 14 RENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKV 73
RENLAND YLLSQMD+DQYVPI+TVA FN V+KLT DI LITEVLRESPNVQVD++G++V
Sbjct: 282 RENLANDTYLLSQMDSDQYVPIYTVARFNLVRKLTNDINLITEVLRESPNVQVDDKGLRV 341
Query: 74 RPNHKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAY 133
RPN KRCI+ILREI ++TPL++++ LFS +SCPR ISCEFA NNSWYITFE+DEDAQKAY
Sbjct: 342 RPNRKRCIIILREISNNTPLDDVKALFSNESCPRPISCEFAANNSWYITFESDEDAQKAY 401
Query: 134 RYLREDVREFQNK 146
+YLRE+V+EFQ K
Sbjct: 402 KYLREEVKEFQGK 414
>sp|Q71RC2|LARP4_HUMAN La-related protein 4 OS=Homo sapiens GN=LARP4 PE=1 SV=3
Length = 724
Score = 209 bits (531), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 90/134 (67%), Positives = 116/134 (86%)
Query: 13 CRENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIK 72
RENL+ D YL+SQMD+DQ++PIWTVAN ++KKLT D LI EVLR SP VQVDE+G K
Sbjct: 132 SRENLSKDLYLISQMDSDQFIPIWTVANMEEIKKLTTDPDLILEVLRSSPMVQVDEKGEK 191
Query: 73 VRPNHKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKA 132
VRP+HKRCIVILREIP++TP+EE++GLF ++CP+ ISCEFAHN++WYITF++D DAQ+A
Sbjct: 192 VRPSHKRCIVILREIPETTPIEEVKGLFKSENCPKVISCEFAHNSNWYITFQSDTDAQQA 251
Query: 133 YRYLREDVREFQNK 146
++YLRE+V+ FQ K
Sbjct: 252 FKYLREEVKTFQGK 265
>sp|Q8BWW4|LARP4_MOUSE La-related protein 4 OS=Mus musculus GN=Larp4 PE=1 SV=2
Length = 719
Score = 201 bits (512), Expect = 1e-51, Method: Composition-based stats.
Identities = 89/133 (66%), Positives = 115/133 (86%)
Query: 14 RENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKV 73
RENL+ D YL+SQMD+DQ+VPIWTVAN ++KKLT + LI EVLR SP VQVDE+G KV
Sbjct: 129 RENLSKDLYLISQMDSDQFVPIWTVANMEEIKKLTTNTDLILEVLRSSPMVQVDEKGEKV 188
Query: 74 RPNHKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAY 133
RP+HKRCIVILREIP++TP+EE++ LF ++CP+ ISCEFAHN++WYITF++D DAQ+A+
Sbjct: 189 RPSHKRCIVILREIPETTPVEEVKALFKNENCPKVISCEFAHNSNWYITFQSDTDAQQAF 248
Query: 134 RYLREDVREFQNK 146
+YLRE+V+ FQ K
Sbjct: 249 KYLREEVKTFQGK 261
>sp|Q92615|LAR4B_HUMAN La-related protein 4B OS=Homo sapiens GN=LARP4B PE=1 SV=3
Length = 738
Score = 193 bits (490), Expect = 4e-49, Method: Composition-based stats.
Identities = 88/136 (64%), Positives = 111/136 (81%)
Query: 14 RENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKV 73
RENLA+D YL+SQMD+DQYVPI TVAN + +KKL+ D+ LI EVLR P VQVDE+G KV
Sbjct: 170 RENLASDMYLISQMDSDQYVPITTVANLDHIKKLSTDVDLIVEVLRSLPLVQVDEKGEKV 229
Query: 74 RPNHKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAY 133
RPN RCIVILREI +STP+EE+ LF G + P+FI+CEFA+N++W+ITFE + DAQ+AY
Sbjct: 230 RPNQNRCIVILREISESTPVEEVEALFKGDNLPKFINCEFAYNDNWFITFETEADAQQAY 289
Query: 134 RYLREDVREFQNKESK 149
+YLRE+V+ FQ K K
Sbjct: 290 KYLREEVKTFQGKPIK 305
>sp|Q6A0A2|LAR4B_MOUSE La-related protein 4B OS=Mus musculus GN=Larp4b PE=1 SV=2
Length = 741
Score = 192 bits (487), Expect = 8e-49, Method: Composition-based stats.
Identities = 89/136 (65%), Positives = 111/136 (81%)
Query: 14 RENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKV 73
RENLA+D YL+SQMD+DQYVPI TVAN + +KKL+ D+ LI EVLR P VQVDE+G KV
Sbjct: 172 RENLASDMYLISQMDSDQYVPITTVANLDHIKKLSTDVDLIVEVLRSLPLVQVDEKGEKV 231
Query: 74 RPNHKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAY 133
RPN RCIVILREI +STP+EE+ LF G + P+FI+CEFA+N++W+ITFE + DAQ+AY
Sbjct: 232 RPNQNRCIVILREISESTPVEEVEALFKGDNLPKFINCEFAYNDNWFITFETEADAQQAY 291
Query: 134 RYLREDVREFQNKESK 149
+YLRE+VR FQ K K
Sbjct: 292 KYLREEVRTFQGKPIK 307
>sp|Q4G0J3|LARP7_HUMAN La-related protein 7 OS=Homo sapiens GN=LARP7 PE=1 SV=1
Length = 582
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 65/139 (46%), Gaps = 20/139 (14%)
Query: 16 NLANDAYLLSQMDN--DQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKV 73
NL D +L Q++ D YV I + +FN++KKLT D KLI LR S V++D EG ++
Sbjct: 50 NLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALRSSAVVELDLEGTRI 109
Query: 74 R---PNHKRC------IVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNS------ 118
R P +R V + +P + I +F GK C + H S
Sbjct: 110 RRKKPLGERPKDEDERTVYVELLPKNVNHSWIERVF-GK-CGNVVYISIPHYKSTGDPKG 167
Query: 119 -WYITFENDEDAQKAYRYL 136
++ FE E A KA +L
Sbjct: 168 FAFVEFETKEQAAKAIEFL 186
>sp|Q4R627|LARP7_MACFA La-related protein 7 OS=Macaca fascicularis GN=LARP7 PE=2 SV=1
Length = 581
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 65/139 (46%), Gaps = 20/139 (14%)
Query: 16 NLANDAYLLSQMDN--DQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKV 73
NL D +L Q++ D YV I + +FN++KKLT D KLI LR S V++D EG ++
Sbjct: 50 NLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALRSSAVVELDLEGTRI 109
Query: 74 R---PNHKRC------IVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNS------ 118
R P +R V + +P + I +F GK C + H S
Sbjct: 110 RRKKPLGERPKDEDERTVYVELLPKNVNHSWIERVF-GK-CGNVVYISIPHYKSTGDPKG 167
Query: 119 -WYITFENDEDAQKAYRYL 136
++ FE E A KA +L
Sbjct: 168 FAFVEFETKEQAAKAIEFL 186
>sp|Q05CL8|LARP7_MOUSE La-related protein 7 OS=Mus musculus GN=Larp7 PE=1 SV=2
Length = 570
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 65/139 (46%), Gaps = 20/139 (14%)
Query: 16 NLANDAYLLSQMDN--DQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKV 73
NL D +L Q++ D YV I + +FN++KKLT D KLI L+ S V++D EG ++
Sbjct: 44 NLHKDKFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALKSSSVVELDLEGTRI 103
Query: 74 R---PNHKRC------IVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNS------ 118
R P +R V + +P + I +F GK C + H S
Sbjct: 104 RRKKPLGERPKDEEERTVYVELLPKNVTHSWIERVF-GK-CGNVVYISIPHYKSTGDPKG 161
Query: 119 -WYITFENDEDAQKAYRYL 136
++ FE E A KA +L
Sbjct: 162 FAFVEFETKEQAAKAIEFL 180
>sp|Q7ZWE3|LARP7_DANRE La-related protein 7 OS=Danio rerio GN=larp7 PE=2 SV=1
Length = 555
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 64/138 (46%), Gaps = 18/138 (13%)
Query: 16 NLANDAYLLS--QMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKV 73
NL D ++ S + D Y+ I + FN++K LT D+KLI L+ S V+V++EG ++
Sbjct: 58 NLHKDRFMKSIIEQSRDGYIDIAVLTTFNRMKNLTADVKLIARALKNSTIVEVNDEGTRI 117
Query: 74 RPNHKRC---------IVILREIPDSTPLEEIRGLFS--GK----SCPRFISCEFAHNNS 118
R V + +P + + +FS G S PR+ S + +
Sbjct: 118 RRKEPLGETPKDVDSRTVYVELLPKTVTHIWLERVFSKCGHVVYISIPRYKSTRHSKGFA 177
Query: 119 WYITFENDEDAQKAYRYL 136
++ FE E AQKA L
Sbjct: 178 -FVEFETQEQAQKAVEML 194
>sp|Q6ZQ58|LARP1_MOUSE La-related protein 1 OS=Mus musculus GN=Larp1 PE=1 SV=2
Length = 1072
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 40/60 (66%)
Query: 15 ENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKVR 74
+NL D +L +MD D ++PI +A+F++V+ LT DI LI L++S V++ EE ++ R
Sbjct: 393 DNLERDFFLRRKMDADGFLPITLIASFHRVQALTTDISLIFAALKDSKVVEMVEEKVRRR 452
>sp|Q6PKG0|LARP1_HUMAN La-related protein 1 OS=Homo sapiens GN=LARP1 PE=1 SV=2
Length = 1096
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 36/100 (36%), Positives = 55/100 (55%), Gaps = 16/100 (16%)
Query: 15 ENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKVR 74
+NL D +L +MD D ++PI +A+F++V+ LT DI LI L++S V++ +E KVR
Sbjct: 418 DNLERDFFLRRKMDADGFLPITLIASFHRVQALTTDISLIFAALKDSKVVEIVDE--KVR 475
Query: 75 PNHKRCIVILREIPDSTPLEEI----RGLFSG-KSCPRFI 109
RE P+ PL I + FS +CP F+
Sbjct: 476 R---------REEPEKWPLPPIVDYSQTDFSQLLNCPEFV 506
>sp|Q5XI01|LARP7_RAT La-related protein 7 OS=Rattus norvegicus GN=Larp7 PE=1 SV=2
Length = 571
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 42/149 (28%), Positives = 64/149 (42%), Gaps = 20/149 (13%)
Query: 16 NLANDAYLLSQMDN--DQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKV 73
NL D +L Q++ D YV I + +FN++KKLT D KLI L+ S V++D EG ++
Sbjct: 45 NLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALKSSSVVELDLEGTRI 104
Query: 74 R---------PNHKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSW----- 119
R + + V + +P + I +F C + H S
Sbjct: 105 RRKKPLGERPKDEEERTVYVELLPKNVTHSWIERVFG--KCGNVVYISIPHYKSTGDPKG 162
Query: 120 --YITFENDEDAQKAYRYLREDVREFQNK 146
++ FE E A KA +L E K
Sbjct: 163 FAFVEFETKEQAAKAIEFLNNPPEEAPRK 191
>sp|Q9VAW5|LARP_DROME La-related protein OS=Drosophila melanogaster GN=larp PE=1 SV=5
Length = 1673
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 15 ENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKVR 74
+NL D +L +MD + Y+P+ +A+F++V LT D+ +I ++ES +++ EG KVR
Sbjct: 744 DNLTGDFFLRRKMDPEGYIPVTLIASFHRVLALTTDVAVIVNAIKESDKLEL-FEGYKVR 802
Query: 75 PNHKRCIVILREIPD 89
+ E+P+
Sbjct: 803 TKTTPTTWPITEVPE 817
>sp|Q659C4|LAR1B_HUMAN La-related protein 1B OS=Homo sapiens GN=LARP1B PE=1 SV=2
Length = 914
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 38/60 (63%)
Query: 15 ENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKVR 74
ENL D +L +MD ++PI +A F +V+ LT ++ LI E L++S V++ +E ++ +
Sbjct: 230 ENLERDFFLRGKMDEQGFLPISLIAGFQRVQALTTNLNLILEALKDSTEVEIVDEKMRKK 289
>sp|P87058|LAH1_SCHPO La protein homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=sla1 PE=1 SV=1
Length = 298
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 7/72 (9%)
Query: 16 NLANDAYL-LSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPN-VQVDEEGIKV 73
NL +D +L + ND +VPI T+ANF ++++ + ++ I LR+SP ++VDE G KV
Sbjct: 79 NLPHDKFLWTTSQKNDGWVPIQTIANFKRMRRF-QPLEAIVNALRKSPELLEVDEAGEKV 137
Query: 74 RPNHKRCIVILR 85
R R I ++R
Sbjct: 138 R----RMIPLVR 145
>sp|Q28G87|LARP7_XENTR La-related protein 7 OS=Xenopus tropicalis GN=larp7 PE=2 SV=1
Length = 593
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 66/139 (47%), Gaps = 20/139 (14%)
Query: 16 NLANDAYLLSQMDN--DQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKV 73
NL D +L Q++ D Y+ I +A+FN++KK+T D KLI ++ S V+++ G K+
Sbjct: 52 NLHKDRFLREQIEKTRDGYIDISLLASFNKMKKITTDSKLIARAVKNSSVVEINLSGTKI 111
Query: 74 R---PNHKRC------IVILREIPDSTPLEEIRGLFSGK-------SCPRFISCEFAHNN 117
R P ++ V + +P + I +F GK S PR+ S
Sbjct: 112 RRRFPLGEKPQDVDSRTVYVELLPKNVTHSWIERVF-GKYGMVVYVSIPRYKSTGDPKGF 170
Query: 118 SWYITFENDEDAQKAYRYL 136
+ +I FE E A KA L
Sbjct: 171 A-FIEFETQEQAAKAIEVL 188
>sp|P28048|LAA_XENLA Lupus La protein homolog A OS=Xenopus laevis GN=ssb-a PE=2 SV=1
Length = 428
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 66/140 (47%), Gaps = 26/140 (18%)
Query: 16 NLANDAYLLSQ-MDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPN--VQVDEEGIK 72
NL D +L Q + +D +VP+ T+ FN++ KLT D I + L++S ++++EE K
Sbjct: 29 NLPRDKFLKQQILLDDGWVPLETMIKFNRLSKLTTDFNTILQALKKSKTELLEINEEKCK 88
Query: 73 VRPNHKRCI---------------VILREIPDSTPLEEIRGLFSGKS------CPRFISC 111
+R + + + V ++ P S L++++ K R +
Sbjct: 89 IRRSPAKPLPELNDEYKNSLKHKSVYIKGFPTSAILDDVKEWLKDKGPIENIQMRRTLQR 148
Query: 112 EFAHNNSWYITFENDEDAQK 131
EF S +I F D+DA+K
Sbjct: 149 EF--KGSIFIIFNTDDDAKK 166
>sp|Q9P6K0|YLA3_SCHPO Uncharacterized HTH La-type RNA-binding protein C1527.03
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC1527.03 PE=1 SV=1
Length = 475
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 5/65 (7%)
Query: 15 ENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESP--NVQVDEE--- 69
ENL D +L MD++ YVP+ +A+FN++K + D+ L+ + S +V +D +
Sbjct: 340 ENLCKDMFLRKHMDDEGYVPLAFLASFNRIKSFSTDLNLLHAACKASDIIDVAIDLQSPM 399
Query: 70 GIKVR 74
IKVR
Sbjct: 400 SIKVR 404
>sp|Q8BN59|LARP6_MOUSE La-related protein 6 OS=Mus musculus GN=Larp6 PE=1 SV=1
Length = 492
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 15 ENLANDAYLLSQMDNDQ--YVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIK 72
ENL DA+LL + ++ YV + + +F +VK LT+D + L+ S ++++E+ K
Sbjct: 107 ENLEKDAFLLKHVRRNKLGYVSVKLLTSFKKVKHLTRDWRTTAHALKYSVTLELNEDHRK 166
Query: 73 VR 74
VR
Sbjct: 167 VR 168
>sp|P28049|LAB_XENLA Lupus La protein homolog B OS=Xenopus laevis GN=ssb-b PE=2 SV=1
Length = 427
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 67/143 (46%), Gaps = 29/143 (20%)
Query: 16 NLANDAYLLSQ--MDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPN--VQVDEEGI 71
NL D +L Q +DN +VP+ T+ FN++ KLT D +I + L++S ++++EE
Sbjct: 28 NLPRDKFLKQQVLLDNG-WVPLETMIKFNRLSKLTTDFNIILQALKKSKTELLEINEEKC 86
Query: 72 KVRPNHKRCI---------------VILREIPDSTPLEEIRGLFSGKS------CPRFIS 110
K+R + + + V ++ P T L+EI+ + K R +
Sbjct: 87 KIRRSPAKPLPELNEDYKNSFKHRSVYIKGFPTITNLDEIKEWLNDKGPIENIQMRRTLQ 146
Query: 111 CEFAHNNSWYITFENDEDAQKAY 133
EF S ++ F N ED K +
Sbjct: 147 REF--KGSVFLVF-NTEDGAKKF 166
>sp|Q9BRS8|LARP6_HUMAN La-related protein 6 OS=Homo sapiens GN=LARP6 PE=1 SV=1
Length = 491
Score = 38.5 bits (88), Expect = 0.013, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 15 ENLANDAYLLSQMDNDQ--YVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIK 72
ENL DA+LL + ++ YV + + +F +VK LT+D + L+ S ++++E+ K
Sbjct: 107 ENLEKDAFLLKHVRRNKLGYVSVKLLTSFKKVKHLTRDWRTTAHALKYSVVLELNEDHRK 166
Query: 73 VR 74
VR
Sbjct: 167 VR 168
>sp|P33399|LHP1_YEAST La protein homolog OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=LHP1 PE=1 SV=2
Length = 275
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 16 NLANDAYLLSQMD-NDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKVR 74
N D +L + + ND +VPI T+A FN++KK + + + E LR S ++V +G V+
Sbjct: 45 NFPYDRFLRTTAEKNDGWVPISTIATFNRMKKY-RPVDKVIEALRSSEILEVSADGENVK 103
>sp|P32067|LA_MOUSE Lupus La protein homolog OS=Mus musculus GN=Ssb PE=2 SV=1
Length = 415
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 16 NLANDAYLLSQMDNDQ-YVPIWTVANFNQVKKLTKDIKLITEVLRESP----NVQVDEEG 70
NL D +L Q+ D+ +VP+ T+ FN++ +LT D +I + L +S V D+
Sbjct: 29 NLPRDKFLKEQIKLDEGWVPLETMIKFNRLNRLTTDFNVIVQALSKSKAKLMEVSADKTK 88
Query: 71 IKVRPN 76
I+ P+
Sbjct: 89 IRRSPS 94
>sp|P38656|LA_RAT Lupus La protein homolog OS=Rattus norvegicus GN=Ssb PE=2 SV=1
Length = 415
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 16 NLANDAYLLSQMDNDQ-YVPIWTVANFNQVKKLTKDIKLITEVLRESP----NVQVDEEG 70
NL D +L Q+ D+ +VP+ T+ FN++ +LT D +I + L +S V D+
Sbjct: 29 NLPRDKFLKEQIKLDEGWVPLETMIKFNRLNRLTTDFNVIVQALSKSKANLMEVSADKTK 88
Query: 71 IKVRPN 76
I+ P+
Sbjct: 89 IRRSPS 94
>sp|P10881|LA_BOVIN Lupus La protein homolog OS=Bos taurus GN=SSB PE=2 SV=2
Length = 404
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 16 NLANDAYLLSQMDNDQ-YVPIWTVANFNQVKKLTKDIKLITEVLRESPN--VQVDEEGIK 72
NL D +L Q+ D+ +VP+ + FN++ +LT D +I E L +S +++ E+ K
Sbjct: 29 NLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTDFNVIVEALSKSKAELMEISEDKTK 88
Query: 73 VR 74
+R
Sbjct: 89 IR 90
>sp|P05455|LA_HUMAN Lupus La protein OS=Homo sapiens GN=SSB PE=1 SV=2
Length = 408
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 16 NLANDAYLLSQMDNDQ-YVPIWTVANFNQVKKLTKDIKLITEVLRESPN--VQVDEEGIK 72
NL D +L Q+ D+ +VP+ + FN++ +LT D +I E L +S +++ E+ K
Sbjct: 29 NLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTDFNVIVEALSKSKAELMEISEDKTK 88
Query: 73 VR 74
+R
Sbjct: 89 IR 90
>sp|P25567|SRO9_YEAST RNA-binding protein SRO9 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SRO9 PE=1 SV=2
Length = 434
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 13 CRENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLT--KDIKLITEVLRE 60
ENL D YL S++ D + P+ ++ F +V ++ D LI LRE
Sbjct: 274 SEENLTVDNYLRSKLSKDGFAPLSLISKFYRVVNMSFGGDTNLILAALRE 323
>sp|Q821V5|UVRC_CHLCV UvrABC system protein C OS=Chlamydophila caviae (strain GPIC)
GN=uvrC PE=3 SV=1
Length = 605
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 6/80 (7%)
Query: 61 SPNVQVDEEGIKVRPNHKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISC------EFA 114
SP +E + + N+ + S P EE++ + P I C + +
Sbjct: 340 SPKTGYGKELLTLAKNNAKVHAETTTQSSSLPYEEMKKILKSPDYPYRIECYDNAHLQGS 399
Query: 115 HNNSWYITFENDEDAQKAYR 134
H YI +END + K+YR
Sbjct: 400 HGVGVYIVYENDAFSPKSYR 419
>sp|Q5SWU9|ACACA_MOUSE Acetyl-CoA carboxylase 1 OS=Mus musculus GN=Acaca PE=1 SV=1
Length = 2345
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 8 LACVCCRENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQV 66
+A V R +++N L ++ Q +P T+ N V+ + + IK + +V R+SPN V
Sbjct: 638 VADVSLRNSISN---FLHSLERGQVLPAHTLLNTVDVELIYEGIKYVLKVTRQSPNSYV 693
>sp|Q13085|ACACA_HUMAN Acetyl-CoA carboxylase 1 OS=Homo sapiens GN=ACACA PE=1 SV=2
Length = 2346
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 8 LACVCCRENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQV 66
+A V R +++N L ++ Q +P T+ N V+ + + +K + +V R+SPN V
Sbjct: 639 VADVSLRNSVSN---FLHSLERGQVLPAHTLLNTVDVELIYEGVKYVLKVTRQSPNSYV 694
>sp|P11497|ACACA_RAT Acetyl-CoA carboxylase 1 OS=Rattus norvegicus GN=Acaca PE=1 SV=1
Length = 2345
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 8 LACVCCRENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQV 66
+A V R +++N L ++ Q +P T+ N V+ + + IK + +V R+SPN V
Sbjct: 638 VADVNLRNSISN---FLHSLERGQVLPAHTLLNTVDVELIYEGIKYVLKVTRQSPNSYV 693
>sp|Q8WU10|PYRD1_HUMAN Pyridine nucleotide-disulfide oxidoreductase domain-containing
protein 1 OS=Homo sapiens GN=PYROXD1 PE=2 SV=1
Length = 500
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 35 IWTVANFNQVKKLTKDIKL----ITEVLRESPNVQVDEEGIKVRPNHKRCIV 82
I V NF Q+ K+ ++ + T + + PN++V E G+K + + CIV
Sbjct: 47 IKAVTNFKQISKILEEFDVEEQSSTMLGKRFPNIKVIESGVKQLKSEEHCIV 98
>sp|O39929|POLG_HCVED Genome polyprotein OS=Hepatitis C virus genotype 4a (isolate ED43)
PE=1 SV=3
Length = 3008
Score = 29.3 bits (64), Expect = 7.8, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 19 NDAYLLSQMDNDQYVPIWTVANFNQVKKLTKD-IKLITEVLRESPNVQVDEEGIKVRPNH 77
N + L ++ + YV + V +F+ V +T+D IK +V +P + + +GI++ +
Sbjct: 2077 NYKFALWRVSAEDYVEVRRVGDFHYVTGVTQDNIKFPCQV--PAPELFTEVDGIRIHRHA 2134
Query: 78 KRCIVILRE 86
+C +LR+
Sbjct: 2135 PKCKPLLRD 2143
>sp|Q24558|EXO1_DROME Exonuclease 1 OS=Drosophila melanogaster GN=tos PE=1 SV=1
Length = 732
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 25/44 (56%)
Query: 52 KLITEVLRESPNVQVDEEGIKVRPNHKRCIVILREIPDSTPLEE 95
+L E LR++ N +DE+ + HK+ ++ ++IP P+ +
Sbjct: 528 RLQREHLRDTENDDMDEQKLSSHSGHKKLRLVCKDIPGKNPIRQ 571
>sp|Q5REJ2|PYRD1_PONAB Pyridine nucleotide-disulfide oxidoreductase domain-containing
protein 1 OS=Pongo abelii GN=PYROXD1 PE=2 SV=1
Length = 500
Score = 29.3 bits (64), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 35 IWTVANFNQVKKLTKDIKL----ITEVLRESPNVQVDEEGIKVRPNHKRCIV 82
I V NF Q+ K+ ++ + T + + PN++V E G+K + + CIV
Sbjct: 47 IKAVTNFKQISKILEEFDVEEQSSTMLEKRFPNIKVIESGVKQLKSEEHCIV 98
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,328,168
Number of Sequences: 539616
Number of extensions: 2296431
Number of successful extensions: 6048
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 6020
Number of HSP's gapped (non-prelim): 47
length of query: 149
length of database: 191,569,459
effective HSP length: 107
effective length of query: 42
effective length of database: 133,830,547
effective search space: 5620882974
effective search space used: 5620882974
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)