Query psy1630
Match_columns 149
No_of_seqs 203 out of 1486
Neff 8.0
Searched_HMMs 46136
Date Fri Aug 16 17:49:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1630.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1630hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2591|consensus 100.0 6.8E-36 1.5E-40 246.0 10.0 147 3-149 99-245 (684)
2 cd08036 LARP_5 La RNA-binding 100.0 1.9E-35 4E-40 186.9 2.6 74 2-75 2-75 (75)
3 cd08035 LARP_4 La RNA-binding 100.0 6.7E-35 1.5E-39 185.5 1.7 74 2-75 2-75 (75)
4 KOG1855|consensus 100.0 2.6E-33 5.7E-38 225.1 6.0 135 4-138 144-308 (484)
5 cd08031 LARP_4_5_like La RNA-b 100.0 1.4E-33 3.1E-38 180.5 0.9 74 2-75 2-75 (75)
6 cd08033 LARP_6 La RNA-binding 100.0 4E-33 8.7E-38 179.3 1.6 74 2-75 2-77 (77)
7 cd08032 LARP_7 La RNA-binding 100.0 3.8E-33 8.3E-38 181.1 0.5 74 2-75 7-82 (82)
8 smart00715 LA Domain in the RN 100.0 3.6E-32 7.9E-37 176.5 1.0 74 3-76 6-80 (80)
9 cd08029 LA_like_fungal La-moti 100.0 6.7E-32 1.4E-36 173.5 1.6 72 3-75 3-76 (76)
10 cd08028 LARP_3 La RNA-binding 100.0 1E-31 2.3E-36 174.7 1.2 73 3-75 7-82 (82)
11 cd08038 LARP_2 La RNA-binding 100.0 9.6E-32 2.1E-36 170.5 1.0 70 2-71 2-71 (73)
12 cd07323 LAM LA motif RNA-bindi 100.0 1.4E-31 3E-36 172.1 1.6 75 1-75 1-75 (75)
13 cd08037 LARP_1 La RNA-binding 100.0 8.4E-32 1.8E-36 170.8 0.5 70 2-71 2-71 (73)
14 cd08034 LARP_1_2 La RNA-bindin 100.0 1.2E-31 2.6E-36 170.7 1.2 72 2-75 2-73 (73)
15 cd08030 LA_like_plant La-motif 100.0 7.1E-31 1.5E-35 173.0 1.6 73 3-75 4-90 (90)
16 PF05383 La: La domain; Inter 99.9 1.6E-27 3.5E-32 147.3 -0.7 58 4-61 1-61 (61)
17 KOG4213|consensus 99.9 3.8E-24 8.3E-29 155.4 3.5 129 4-136 17-170 (205)
18 KOG0121|consensus 99.7 1.6E-16 3.4E-21 110.5 6.5 90 40-149 15-109 (153)
19 PF00076 RRM_1: RNA recognitio 99.6 1E-16 2.2E-21 100.1 3.6 66 82-149 1-70 (70)
20 PLN03134 glycine-rich RNA-bind 99.6 5.7E-16 1.2E-20 111.3 5.2 71 77-149 32-107 (144)
21 COG5193 LHP1 La protein, small 99.6 1.9E-15 4.2E-20 121.6 3.8 130 4-133 75-243 (438)
22 PF14259 RRM_6: RNA recognitio 99.6 3.5E-15 7.5E-20 93.8 3.7 66 82-149 1-70 (70)
23 KOG0107|consensus 99.5 6.7E-15 1.4E-19 107.2 4.0 69 78-148 9-77 (195)
24 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.5 8.8E-15 1.9E-19 117.7 4.7 67 81-149 271-342 (352)
25 PLN03120 nucleic acid binding 99.5 1.5E-14 3.4E-19 111.9 4.7 68 79-149 4-73 (260)
26 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.5 1.9E-14 4.1E-19 115.7 4.8 70 78-149 2-76 (352)
27 TIGR01659 sex-lethal sex-letha 99.5 4.2E-14 9E-19 114.6 5.4 71 77-149 105-180 (346)
28 TIGR01659 sex-lethal sex-letha 99.5 1.6E-13 3.4E-18 111.3 7.2 124 21-146 122-263 (346)
29 KOG0114|consensus 99.4 1.6E-13 3.5E-18 92.3 5.4 69 78-148 17-87 (124)
30 smart00362 RRM_2 RNA recogniti 99.4 1.9E-13 4.1E-18 84.1 4.0 66 81-148 1-69 (72)
31 TIGR01645 half-pint poly-U bin 99.4 4.2E-13 9.1E-18 115.0 7.1 129 19-149 120-277 (612)
32 TIGR01645 half-pint poly-U bin 99.4 2.9E-13 6.3E-18 116.0 4.7 70 78-149 106-180 (612)
33 KOG0125|consensus 99.4 3E-13 6.4E-18 106.8 3.9 68 79-148 96-166 (376)
34 PLN03121 nucleic acid binding 99.4 6.1E-13 1.3E-17 101.8 4.7 67 79-148 5-73 (243)
35 KOG0122|consensus 99.3 1.5E-12 3.2E-17 99.3 6.0 65 75-139 185-254 (270)
36 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.3 9.8E-13 2.1E-17 110.7 5.2 70 79-149 2-71 (481)
37 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.3 1.1E-12 2.3E-17 110.5 4.9 70 78-149 274-344 (481)
38 TIGR01628 PABP-1234 polyadenyl 99.3 1.1E-12 2.4E-17 112.0 4.5 67 81-149 2-73 (562)
39 KOG0131|consensus 99.3 1.7E-12 3.7E-17 95.2 4.8 70 78-149 8-82 (203)
40 PLN03213 repressor of silencin 99.3 1.8E-12 3.9E-17 107.3 5.4 68 80-149 11-81 (759)
41 TIGR01628 PABP-1234 polyadenyl 99.3 3.7E-12 7.9E-17 108.8 6.9 69 79-149 285-357 (562)
42 KOG0130|consensus 99.3 3.8E-12 8.3E-17 89.5 5.2 71 76-148 69-144 (170)
43 cd00590 RRM RRM (RNA recogniti 99.3 3.2E-12 6.9E-17 79.0 4.0 66 81-148 1-70 (74)
44 TIGR01622 SF-CC1 splicing fact 99.3 3.2E-12 6.9E-17 106.4 4.7 68 78-148 88-160 (457)
45 TIGR01642 U2AF_lg U2 snRNP aux 99.3 4.8E-12 1E-16 106.5 5.7 68 79-148 295-367 (509)
46 KOG0148|consensus 99.3 5.7E-12 1.2E-16 97.5 5.2 69 78-149 163-231 (321)
47 COG0724 RNA-binding proteins ( 99.3 5.7E-12 1.2E-16 95.2 4.7 69 79-149 115-188 (306)
48 TIGR01622 SF-CC1 splicing fact 99.2 4.7E-12 1E-16 105.3 4.2 69 79-149 186-259 (457)
49 smart00360 RRM RNA recognition 99.2 5E-12 1.1E-16 77.4 3.2 63 84-148 1-68 (71)
50 TIGR01648 hnRNP-R-Q heterogene 99.2 5.6E-12 1.2E-16 107.8 4.5 66 79-149 233-300 (578)
51 TIGR01648 hnRNP-R-Q heterogene 99.2 1E-11 2.3E-16 106.1 4.8 68 79-148 58-130 (578)
52 PF13893 RRM_5: RNA recognitio 99.2 6.2E-12 1.3E-16 75.9 2.3 52 96-149 1-52 (56)
53 KOG0113|consensus 99.2 1.7E-11 3.7E-16 95.8 4.6 69 78-148 100-173 (335)
54 KOG4207|consensus 99.2 1.9E-11 4.2E-16 91.4 3.9 70 78-149 12-86 (256)
55 COG5193 LHP1 La protein, small 99.2 2.9E-12 6.3E-17 103.5 -0.9 59 3-61 273-331 (438)
56 KOG0149|consensus 99.1 2.4E-11 5.3E-16 92.2 3.4 66 79-147 12-82 (247)
57 KOG0111|consensus 99.1 1.9E-11 4.2E-16 92.3 2.6 71 77-149 8-83 (298)
58 KOG0144|consensus 99.1 4.1E-11 8.8E-16 97.7 4.3 96 50-146 88-194 (510)
59 TIGR01642 U2AF_lg U2 snRNP aux 99.1 3.9E-11 8.6E-16 101.0 3.3 68 78-149 174-253 (509)
60 KOG0105|consensus 99.1 3.1E-11 6.7E-16 89.1 2.1 68 79-148 6-75 (241)
61 KOG0108|consensus 99.1 6.6E-11 1.4E-15 98.1 4.3 68 80-149 19-91 (435)
62 KOG0124|consensus 99.1 1E-10 2.2E-15 94.0 4.2 69 79-149 113-186 (544)
63 smart00361 RRM_1 RNA recogniti 99.0 9.6E-11 2.1E-15 74.0 2.4 55 93-149 2-68 (70)
64 KOG0127|consensus 99.0 1.7E-10 3.8E-15 96.4 4.1 68 79-148 117-188 (678)
65 KOG0117|consensus 99.0 2.8E-10 6.1E-15 93.1 4.9 69 78-148 82-156 (506)
66 KOG0123|consensus 99.0 4.5E-10 9.7E-15 91.9 6.0 122 21-148 13-145 (369)
67 KOG0145|consensus 99.0 1.5E-10 3.2E-15 89.5 2.4 119 21-139 47-192 (360)
68 KOG0117|consensus 99.0 2.1E-10 4.7E-15 93.8 3.3 64 80-148 260-323 (506)
69 KOG0126|consensus 99.0 2.2E-11 4.8E-16 89.5 -2.7 70 78-149 34-108 (219)
70 KOG2590|consensus 99.0 1.3E-10 2.8E-15 96.3 0.9 64 1-69 301-364 (448)
71 KOG0144|consensus 99.0 6.4E-10 1.4E-14 90.8 4.7 65 80-145 35-104 (510)
72 KOG4212|consensus 98.9 9E-10 2E-14 90.3 5.0 70 78-149 43-117 (608)
73 KOG0127|consensus 98.9 2.7E-09 5.9E-14 89.4 5.7 58 79-136 292-354 (678)
74 KOG0145|consensus 98.9 2.1E-09 4.6E-14 83.1 4.3 70 78-149 40-114 (360)
75 KOG4660|consensus 98.9 2.6E-09 5.7E-14 89.4 5.1 70 78-149 74-143 (549)
76 KOG0148|consensus 98.9 2.3E-09 5E-14 83.2 4.2 67 81-149 64-135 (321)
77 KOG4206|consensus 98.8 6.7E-09 1.5E-13 78.5 4.6 68 80-149 10-83 (221)
78 KOG4212|consensus 98.8 5.5E-09 1.2E-13 85.7 3.8 68 78-149 535-604 (608)
79 KOG0147|consensus 98.8 4.9E-09 1.1E-13 87.7 3.4 66 82-149 281-351 (549)
80 KOG0153|consensus 98.7 1.6E-08 3.4E-13 80.8 3.4 68 79-148 228-295 (377)
81 KOG0132|consensus 98.7 3.1E-08 6.8E-13 85.8 5.2 68 79-149 421-488 (894)
82 KOG0110|consensus 98.7 1.5E-08 3.3E-13 86.9 3.2 67 80-148 516-590 (725)
83 KOG0110|consensus 98.6 4E-08 8.7E-13 84.4 3.6 68 79-148 613-685 (725)
84 KOG0146|consensus 98.5 6.7E-08 1.5E-12 75.2 3.8 67 78-145 18-88 (371)
85 KOG0109|consensus 98.5 7.7E-08 1.7E-12 75.5 3.7 67 78-149 77-143 (346)
86 KOG0123|consensus 98.5 9.6E-08 2.1E-12 78.2 4.4 69 78-148 269-341 (369)
87 KOG0124|consensus 98.5 2E-07 4.3E-12 75.3 5.6 95 52-148 166-282 (544)
88 KOG0533|consensus 98.5 1.4E-07 3.1E-12 72.9 4.3 69 79-149 83-155 (243)
89 KOG4208|consensus 98.5 2.4E-07 5.1E-12 69.4 4.8 68 79-148 49-122 (214)
90 KOG0415|consensus 98.4 1.8E-07 3.9E-12 75.2 4.0 70 77-148 237-311 (479)
91 PF08777 RRM_3: RNA binding mo 98.4 3.8E-07 8.3E-12 62.1 4.9 58 80-138 2-59 (105)
92 KOG0109|consensus 98.4 8.6E-08 1.9E-12 75.2 1.8 64 81-149 4-67 (346)
93 KOG4209|consensus 98.4 2.1E-07 4.5E-12 71.7 3.2 70 77-149 99-173 (231)
94 KOG0116|consensus 98.3 8.3E-07 1.8E-11 73.6 5.4 66 79-147 288-358 (419)
95 KOG0106|consensus 98.3 2.2E-07 4.8E-12 70.6 1.6 61 81-146 3-63 (216)
96 KOG4454|consensus 98.2 2.7E-07 5.9E-12 69.9 0.2 69 78-149 8-80 (267)
97 KOG4211|consensus 98.2 3.6E-06 7.8E-11 70.1 6.3 56 81-137 12-70 (510)
98 KOG4205|consensus 98.1 1E-06 2.2E-11 70.6 2.0 68 78-148 5-77 (311)
99 KOG0131|consensus 98.1 2.2E-06 4.7E-11 63.3 3.5 97 50-148 60-169 (203)
100 KOG0146|consensus 98.1 3.5E-06 7.6E-11 65.8 4.6 70 77-148 283-357 (371)
101 KOG1457|consensus 98.0 9.8E-06 2.1E-10 61.8 5.4 64 79-144 34-103 (284)
102 PF04059 RRM_2: RNA recognitio 98.0 1.2E-05 2.7E-10 53.9 5.3 64 79-144 1-71 (97)
103 KOG4661|consensus 98.0 9.5E-06 2.1E-10 69.0 4.9 68 79-148 405-477 (940)
104 KOG1548|consensus 98.0 6.9E-06 1.5E-10 65.9 3.8 69 79-149 134-214 (382)
105 KOG4205|consensus 97.9 7E-06 1.5E-10 65.8 3.3 68 78-148 96-168 (311)
106 KOG0106|consensus 97.9 6.8E-06 1.5E-10 62.5 2.2 67 78-149 98-164 (216)
107 KOG4211|consensus 97.9 9E-05 1.9E-09 61.9 8.4 90 49-138 57-167 (510)
108 PF11608 Limkain-b1: Limkain b 97.8 4.9E-05 1.1E-09 49.6 5.4 63 80-148 3-69 (90)
109 PF14605 Nup35_RRM_2: Nup53/35 97.8 2.2E-05 4.9E-10 46.9 3.2 52 80-133 2-53 (53)
110 KOG1995|consensus 97.8 1.6E-05 3.5E-10 63.9 3.3 70 78-149 65-147 (351)
111 KOG0151|consensus 97.8 2.1E-05 4.5E-10 68.2 3.9 69 79-149 174-250 (877)
112 COG5175 MOT2 Transcriptional r 97.7 4.8E-05 1E-09 61.2 3.9 70 78-149 113-196 (480)
113 KOG1457|consensus 97.5 4.9E-05 1.1E-09 58.0 2.3 60 80-139 211-271 (284)
114 KOG4307|consensus 97.4 0.00018 4E-09 62.5 4.4 67 80-148 868-939 (944)
115 KOG1190|consensus 97.4 0.00026 5.6E-09 58.2 5.0 69 79-149 297-366 (492)
116 KOG0226|consensus 97.3 0.00036 7.8E-09 54.2 4.0 69 79-149 190-263 (290)
117 KOG4206|consensus 97.2 0.00056 1.2E-08 52.0 4.9 61 78-138 145-205 (221)
118 KOG0120|consensus 97.2 0.00022 4.7E-09 60.4 3.0 53 94-148 424-484 (500)
119 KOG1190|consensus 97.2 0.0001 2.3E-09 60.5 0.9 70 78-148 27-96 (492)
120 KOG1548|consensus 97.1 0.00054 1.2E-08 55.2 3.3 68 79-148 265-344 (382)
121 KOG0129|consensus 97.0 0.0011 2.5E-08 55.7 5.2 58 78-135 369-432 (520)
122 KOG0120|consensus 97.0 0.00043 9.4E-09 58.6 2.7 68 79-148 289-361 (500)
123 KOG2314|consensus 96.9 0.0012 2.6E-08 56.3 4.1 61 79-139 58-128 (698)
124 KOG0147|consensus 96.8 0.0015 3.2E-08 55.4 4.3 55 93-149 467-521 (549)
125 KOG4210|consensus 96.8 0.00053 1.1E-08 54.5 1.2 67 79-148 184-256 (285)
126 KOG2202|consensus 96.8 0.00038 8.2E-09 54.0 0.2 45 102-148 92-140 (260)
127 PF08675 RNA_bind: RNA binding 96.8 0.0053 1.2E-07 40.0 5.5 54 82-138 11-64 (87)
128 KOG0105|consensus 96.7 0.0034 7.3E-08 46.9 4.9 58 79-138 115-172 (241)
129 KOG0128|consensus 96.6 0.00032 7E-09 62.0 -1.1 59 80-138 668-731 (881)
130 KOG1365|consensus 96.6 0.0068 1.5E-07 49.8 6.1 59 79-137 161-227 (508)
131 KOG0129|consensus 96.5 0.0042 9.2E-08 52.4 4.9 57 79-135 259-325 (520)
132 KOG3152|consensus 96.4 0.0012 2.6E-08 51.3 1.0 66 80-147 75-157 (278)
133 PF05172 Nup35_RRM: Nup53/35/4 96.4 0.0033 7.1E-08 42.4 3.1 64 79-146 6-81 (100)
134 KOG1365|consensus 96.4 0.0028 6E-08 52.0 2.9 61 78-138 279-346 (508)
135 PF09421 FRQ: Frequency clock 96.2 0.0023 5E-08 57.7 1.8 47 28-74 474-521 (989)
136 PF10309 DUF2414: Protein of u 96.1 0.016 3.5E-07 35.6 4.6 53 80-136 6-62 (62)
137 KOG2416|consensus 95.5 0.0099 2.2E-07 51.2 2.7 60 78-138 443-503 (718)
138 KOG1456|consensus 95.1 0.044 9.6E-07 45.0 5.0 67 79-147 287-354 (494)
139 KOG0128|consensus 95.1 0.013 2.8E-07 52.2 2.0 60 79-138 736-799 (881)
140 KOG2068|consensus 94.8 0.019 4E-07 46.3 2.0 68 80-149 78-156 (327)
141 KOG4849|consensus 94.6 0.028 6.2E-07 45.8 2.8 67 78-146 79-152 (498)
142 KOG2193|consensus 94.6 0.043 9.3E-07 45.8 3.7 65 81-148 3-68 (584)
143 PF03467 Smg4_UPF3: Smg-4/UPF3 94.5 0.042 9E-07 40.7 3.3 60 79-138 7-77 (176)
144 KOG1456|consensus 94.3 0.13 2.8E-06 42.4 5.8 61 77-138 404-469 (494)
145 KOG1996|consensus 94.0 0.042 9E-07 43.8 2.5 54 93-148 300-359 (378)
146 KOG0112|consensus 93.8 0.11 2.3E-06 47.0 4.7 60 78-138 454-513 (975)
147 PF08952 DUF1866: Domain of un 93.7 0.054 1.2E-06 38.9 2.3 65 78-148 26-99 (146)
148 PF15023 DUF4523: Protein of u 93.1 0.28 6E-06 35.3 5.1 59 78-138 85-147 (166)
149 KOG0115|consensus 92.8 0.11 2.5E-06 40.5 3.1 59 80-138 32-94 (275)
150 KOG4676|consensus 92.7 0.08 1.7E-06 43.7 2.2 64 81-147 9-80 (479)
151 PF11767 SET_assoc: Histone ly 91.9 0.26 5.7E-06 30.6 3.4 45 90-138 11-55 (66)
152 KOG4307|consensus 91.8 0.2 4.3E-06 44.3 3.7 55 81-135 4-59 (944)
153 KOG4676|consensus 90.9 0.019 4.1E-07 47.3 -3.2 58 79-136 151-209 (479)
154 KOG2135|consensus 90.2 0.065 1.4E-06 45.1 -0.7 68 78-149 371-439 (526)
155 KOG2278|consensus 87.8 0.2 4.3E-06 37.1 0.5 37 26-62 28-64 (207)
156 PF01885 PTS_2-RNA: RNA 2'-pho 87.6 0.22 4.7E-06 37.2 0.6 50 27-76 27-81 (186)
157 KOG4285|consensus 87.2 0.85 1.8E-05 36.6 3.7 60 82-146 200-259 (350)
158 PF07576 BRAP2: BRCA1-associat 87.2 2.1 4.5E-05 29.3 5.2 61 82-144 16-80 (110)
159 PF03880 DbpA: DbpA RNA bindin 85.4 1.6 3.4E-05 27.4 3.7 57 90-149 12-70 (74)
160 PF04847 Calcipressin: Calcipr 84.1 0.66 1.4E-05 34.6 1.7 56 92-148 8-63 (184)
161 KOG0112|consensus 83.4 0.19 4.1E-06 45.4 -1.6 60 79-138 372-435 (975)
162 PRK00819 RNA 2'-phosphotransfe 82.6 0.65 1.4E-05 34.5 1.1 48 27-76 28-77 (179)
163 PF03468 XS: XS domain; Inter 79.3 2.9 6.4E-05 28.8 3.4 50 80-129 9-69 (116)
164 KOG4660|consensus 78.0 1.9 4.1E-05 37.2 2.6 24 115-138 430-453 (549)
165 KOG2253|consensus 76.3 1.6 3.4E-05 38.4 1.6 65 76-146 37-101 (668)
166 KOG4574|consensus 74.4 0.87 1.9E-05 41.2 -0.3 55 84-139 303-357 (1007)
167 KOG0804|consensus 70.3 6.1 0.00013 33.5 3.6 64 79-144 74-141 (493)
168 KOG4210|consensus 60.5 5.4 0.00012 31.8 1.6 59 79-137 88-151 (285)
169 KOG2891|consensus 59.5 5.5 0.00012 31.9 1.4 34 79-112 149-194 (445)
170 PTZ00315 2'-phosphotransferase 57.4 5.1 0.00011 35.1 1.0 50 27-76 400-455 (582)
171 KOG2590|consensus 55.2 3.7 8E-05 34.8 -0.2 60 5-64 104-166 (448)
172 PRK14548 50S ribosomal protein 53.5 40 0.00088 21.8 4.6 52 82-133 23-78 (84)
173 TIGR03636 L23_arch archaeal ri 50.7 50 0.0011 21.0 4.6 52 82-133 16-71 (77)
174 PF03439 Spt5-NGN: Early trans 50.1 15 0.00032 23.6 2.1 25 112-136 40-64 (84)
175 PF07292 NID: Nmi/IFP 35 domai 48.9 5.8 0.00013 26.1 0.0 24 78-101 51-74 (88)
176 PF11823 DUF3343: Protein of u 44.6 29 0.00062 21.4 2.7 28 117-146 2-29 (73)
177 KOG4019|consensus 44.5 16 0.00035 27.3 1.8 63 81-146 12-79 (193)
178 PF11411 DNA_ligase_IV: DNA li 42.5 14 0.0003 20.1 0.9 16 89-104 19-34 (36)
179 KOG4410|consensus 41.1 31 0.00068 27.8 3.0 46 80-126 331-377 (396)
180 PF09341 Pcc1: Transcription f 39.1 42 0.00091 20.8 2.9 28 117-145 3-30 (76)
181 PF10736 DUF2527: Protein of u 38.0 15 0.00033 19.8 0.6 10 7-16 15-24 (38)
182 PF08544 GHMP_kinases_C: GHMP 35.9 63 0.0014 19.8 3.4 45 93-138 36-81 (85)
183 PF15513 DUF4651: Domain of un 33.1 27 0.00057 21.4 1.2 19 93-111 8-26 (62)
184 COG1058 CinA Predicted nucleot 32.7 1.4E+02 0.003 23.5 5.4 61 79-139 180-245 (255)
185 PRK10905 cell division protein 32.1 73 0.0016 26.0 3.8 55 81-138 249-308 (328)
186 PF02617 ClpS: ATP-dependent C 31.3 90 0.0019 19.6 3.6 34 114-148 45-78 (82)
187 KOG2295|consensus 30.5 9.4 0.0002 33.3 -1.5 63 77-139 229-296 (648)
188 KOG4008|consensus 29.2 30 0.00066 27.0 1.2 32 78-109 39-70 (261)
189 COG4009 Uncharacterized protei 29.0 64 0.0014 20.9 2.5 42 63-104 31-73 (88)
190 PF12944 DUF3840: Protein of u 28.6 27 0.00058 23.0 0.7 21 3-23 8-28 (104)
191 PF10970 DUF2772: Protein of u 28.2 25 0.00054 24.5 0.5 14 3-16 34-47 (121)
192 KOG2187|consensus 27.5 64 0.0014 28.1 2.9 32 114-147 61-92 (534)
193 COG5470 Uncharacterized conser 25.5 68 0.0015 21.4 2.2 19 115-133 52-70 (96)
194 COG2608 CopZ Copper chaperone 23.6 1.8E+02 0.004 17.7 5.3 57 80-137 4-61 (71)
195 TIGR02697 WPE_wolbac Wolbachia 23.4 52 0.0011 17.8 1.1 28 10-38 6-33 (36)
196 PF10567 Nab6_mRNP_bdg: RNA-re 22.9 1.7E+02 0.0038 23.6 4.4 56 79-134 15-82 (309)
197 KOG4483|consensus 22.5 1.2E+02 0.0026 25.7 3.6 53 79-134 391-445 (528)
198 PF13535 ATP-grasp_4: ATP-gras 22.4 1.2E+02 0.0025 21.3 3.2 48 92-139 27-74 (184)
199 PRK13022 secF preprotein trans 21.4 4.2E+02 0.0091 21.0 6.7 52 86-138 48-102 (289)
200 PF14893 PNMA: PNMA 21.1 58 0.0013 26.6 1.5 23 79-101 18-40 (331)
201 PF14044 NETI: NETI protein 21.0 36 0.00079 20.5 0.2 16 24-39 14-29 (57)
202 COG1859 KptA RNA:NAD 2'-phosph 20.4 46 0.001 25.5 0.7 48 27-76 54-103 (211)
No 1
>KOG2591|consensus
Probab=100.00 E-value=6.8e-36 Score=245.97 Aligned_cols=147 Identities=66% Similarity=1.101 Sum_probs=144.1
Q ss_pred ccccccceeeccccccchhhhhhhcCCCceeeeEEeechhhhhhhchhhhHHHHHHhhCCCcccccccccccCCCceeEE
Q psy1630 3 LTTYDLACVCCRENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKVRPNHKRCIV 82 (149)
Q Consensus 3 ~i~~q~e~yfs~~Nl~~d~~l~~~~~~~g~vpi~~~~~F~kvk~l~~d~~~i~~al~~S~~lev~~d~~~vrr~~~~~tl 82 (149)
.+++|||||||.+||..|.||..+|++|.||||.+++.|+.|++|++|+++|.++|++|+.|+|++++.+||+..++|.+
T Consensus 99 ~lk~qlEy~fSreNlssD~YL~sQMDSDqyVPI~tva~~~~i~klttDvdLI~Evlresp~VqvDekgekVrp~~kRcIv 178 (684)
T KOG2591|consen 99 LLKKQLEYYFSRENLSSDRYLISQMDSDQYVPINTVANFPEIMKLTTDVDLIVEVLRESPNVQVDEKGEKVRPNHKRCIV 178 (684)
T ss_pred HHHHHHHHhhccccccchhhhhhhcccccccchhhhccchhhhhhccchHHHHHHHhcCCCceeccCccccccCcceeEE
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 83 ILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 83 ~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
+++.||+.+.+|+|+.+|+.-.++++|+|++..+..|||+|++.+||++|++.|+...++|.||+|+
T Consensus 179 ilREIpettp~e~Vk~lf~~encPk~iscefa~N~nWyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 179 ILREIPETTPIEVVKALFKGENCPKVISCEFAHNDNWYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred EEeecCCCChHHHHHHHhccCCCCCceeeeeeecCceEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 9999999999999999999999999999999999999999999999999999999999999999984
No 2
>cd08036 LARP_5 La RNA-binding domain of La-related protein 5. This domain is found in vertebrate La-related protein 5 (LARP5). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=100.00 E-value=1.9e-35 Score=186.88 Aligned_cols=74 Identities=59% Similarity=0.855 Sum_probs=72.2
Q ss_pred cccccccceeeccccccchhhhhhhcCCCceeeeEEeechhhhhhhchhhhHHHHHHhhCCCcccccccccccC
Q psy1630 2 YLTTYDLACVCCRENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKVRP 75 (149)
Q Consensus 2 ~~i~~q~e~yfs~~Nl~~d~~l~~~~~~~g~vpi~~~~~F~kvk~l~~d~~~i~~al~~S~~lev~~d~~~vrr 75 (149)
.+|++||||||||+||++|.||+++|+++|||||+++++|+|||+||.|.+.|.+||+.|+.|+|+++|.+|||
T Consensus 2 e~i~kQvEyYFS~~NL~~D~fLr~~md~~g~Vpi~~ia~F~rik~Lt~D~~lI~~aL~~S~~vevse~g~kVRp 75 (75)
T cd08036 2 ELLKKTLEFCLSRENLASDMYLISQMDSDQYVPIMTVANLDHIKKLSTDVDLIVDVLRSLPLVQVDEKGEKVRP 75 (75)
T ss_pred hhhhcceeeeechhhccccHHHHHHhccCCCEehHHHhccHHHHHhcCCHHHHHHHHhhCCeEEECCCCCccCc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999996
No 3
>cd08035 LARP_4 La RNA-binding domain of La-related protein 4. This domain is found in vertebrate La-related protein 4 (LARP4), also known as c-MPL binding protein. La-type domains often co-occur with RNA-recognition motifs (RRMs). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=100.00 E-value=6.7e-35 Score=185.54 Aligned_cols=74 Identities=59% Similarity=0.881 Sum_probs=72.0
Q ss_pred cccccccceeeccccccchhhhhhhcCCCceeeeEEeechhhhhhhchhhhHHHHHHhhCCCcccccccccccC
Q psy1630 2 YLTTYDLACVCCRENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKVRP 75 (149)
Q Consensus 2 ~~i~~q~e~yfs~~Nl~~d~~l~~~~~~~g~vpi~~~~~F~kvk~l~~d~~~i~~al~~S~~lev~~d~~~vrr 75 (149)
..|++||||||||+||++|.||+++|+++|||||++|++|+||++||.|.+.|.+||+.|+.|+|+++|.+|||
T Consensus 2 e~i~~QvEyYFSd~NL~~D~fL~~~md~~G~Vpi~~iasF~rik~lt~d~~~I~~AL~~S~~levsedg~kVRp 75 (75)
T cd08035 2 ECLKKQLEFCFSRENLSKDLYLISQMDSDQFVPIWTVANMEGIKKLTTDMDLILDVLRSSPMVQVDETGEKVRP 75 (75)
T ss_pred hHHHhhHHhhcCHhhcccCHHHHHhhCcCCCEehHHHhccHHHHHhcCCHHHHHHHHHcCCeEEEcCCCCccCc
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999996
No 4
>KOG1855|consensus
Probab=99.98 E-value=2.6e-33 Score=225.09 Aligned_cols=135 Identities=29% Similarity=0.438 Sum_probs=125.3
Q ss_pred cccccceeeccccccchhhhhhhcC--CCceeeeEEeechhhhhhhchhhhHHHHHHhhCCCcccccccccccCCC----
Q psy1630 4 TTYDLACVCCRENLANDAYLLSQMD--NDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKVRPNH---- 77 (149)
Q Consensus 4 i~~q~e~yfs~~Nl~~d~~l~~~~~--~~g~vpi~~~~~F~kvk~l~~d~~~i~~al~~S~~lev~~d~~~vrr~~---- 77 (149)
|.+||||||||+||.+|.||.++|. ++|||||.++++|+|||+||.|+..+..||+.|..|+||+|+.||||..
T Consensus 144 Iv~QVEyyFSDenL~~d~fLlkhvrrnkeGyVpv~~vaSFKKvK~LTrd~~~va~ALr~S~kL~vseDgkKVrRisPlp~ 223 (484)
T KOG1855|consen 144 IVDQVEYYFSDENLLKDAFLLKHVRRNKEGYVPVKLVASFKKVKALTRDWKLVADALRKSSKLEVSEDGKKVRRISPLPE 223 (484)
T ss_pred HHHHhheeeccccccchHHHHHHHhcCCCCceeeehhhhHHHHHHHhhhhHHHHHHHhhcceEEEccCCceeeecCCCCC
Confidence 6789999999999999999999996 8999999999999999999999999999999999999999999999863
Q ss_pred ------ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee------------------eecCeeEEEEeccHHHHHHH
Q psy1630 78 ------KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF------------------AHNNSWYITFENDEDAQKAY 133 (149)
Q Consensus 78 ------~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~------------------~~kg~afVeF~~~e~A~~Ai 133 (149)
+.+||.+.|||.+-.-+.|.++|+.+|.|+.|++-. ..+-+|+|||+..+.|.+|.
T Consensus 224 ~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~ 303 (484)
T KOG1855|consen 224 FDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAR 303 (484)
T ss_pred ccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHH
Confidence 578999999999999999999999999999998721 13678999999999999999
Q ss_pred HHHHH
Q psy1630 134 RYLRE 138 (149)
Q Consensus 134 ~~l~~ 138 (149)
+.++.
T Consensus 304 e~~~~ 308 (484)
T KOG1855|consen 304 ELLNP 308 (484)
T ss_pred Hhhch
Confidence 88855
No 5
>cd08031 LARP_4_5_like La RNA-binding domain of proteins similar to La-related proteins 4 and 5. This domain is found in proteins similar to La-related proteins 4 and 5 (LARP4, LARP5). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.97 E-value=1.4e-33 Score=180.53 Aligned_cols=74 Identities=73% Similarity=1.053 Sum_probs=71.9
Q ss_pred cccccccceeeccccccchhhhhhhcCCCceeeeEEeechhhhhhhchhhhHHHHHHhhCCCcccccccccccC
Q psy1630 2 YLTTYDLACVCCRENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKVRP 75 (149)
Q Consensus 2 ~~i~~q~e~yfs~~Nl~~d~~l~~~~~~~g~vpi~~~~~F~kvk~l~~d~~~i~~al~~S~~lev~~d~~~vrr 75 (149)
..|++||||||||+||++|.||+++|+++|||||++|++|+||++++.|.+.|.+||+.|+.|+|++|+++|||
T Consensus 2 ~~i~~QvEfYFSd~NL~~D~fL~~~m~~dG~Vpl~~i~~F~rmk~lt~d~~~i~~Al~~S~~lev~ed~~~VR~ 75 (75)
T cd08031 2 ELLKRQLEYYFSRENLANDAYLLSQMDSDQYVPIWTIANFNKIKKLTTDIDLIVEALRESPNVQVDEKGEKVRP 75 (75)
T ss_pred hHHHHHHHHHcCHhhhccCHHHHHHhCCCCCEEHHHHhCchhHHHHcCCHHHHHHHHHhCCeEEEcCCCCccCc
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999996
No 6
>cd08033 LARP_6 La RNA-binding domain of La-related protein 6. This domain is found in animal and plant proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.97 E-value=4e-33 Score=179.28 Aligned_cols=74 Identities=36% Similarity=0.589 Sum_probs=71.4
Q ss_pred cccccccceeeccccccchhhhhhhc--CCCceeeeEEeechhhhhhhchhhhHHHHHHhhCCCcccccccccccC
Q psy1630 2 YLTTYDLACVCCRENLANDAYLLSQM--DNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKVRP 75 (149)
Q Consensus 2 ~~i~~q~e~yfs~~Nl~~d~~l~~~~--~~~g~vpi~~~~~F~kvk~l~~d~~~i~~al~~S~~lev~~d~~~vrr 75 (149)
..|++||||||||+||++|.||+++| +++|||||+++++|+||++++.|.+.|.+||+.|+.|||++|+++|||
T Consensus 2 ~~i~~QvEfYFSd~NL~~D~fL~~~~~~~~dG~Vpl~~i~~F~rmk~l~~d~~~I~~Al~~S~~lev~~d~~~VRR 77 (77)
T cd08033 2 QKIVKQVEYYFSDENLLKDAFLLKHVRRNKEGYVPIKLIASFKKVKALTRDWRVVAAALRRSSKLVVSEDGKKVRR 77 (77)
T ss_pred hHHHhHHHhhcCHhhhccCHHHHHHhccCCCCcEehHHHhcchHHHHHcCCHHHHHHHHHhCCeEEEcCCCCccCC
Confidence 45899999999999999999999999 589999999999999999999999999999999999999999999997
No 7
>cd08032 LARP_7 La RNA-binding domain of La-related protein 7. LARP7 is a component of the 7SK snRNP, a key factor in the regulation of RNA polymerase II transcription. 7SK functionality is dependent on the presence of LARP7, which is thought to stabilize the 7SK RNA by interacting with its 3' end. The release of 7SK RNA from P-TEFb/HEXIM/7SK complexes activates the cyclin-dependent kinase P-TEFb, which in turn phosphorylates the C-terminal domain of RNA pol II and mediates a transition into productive transcription elongation.
Probab=99.97 E-value=3.8e-33 Score=181.13 Aligned_cols=74 Identities=32% Similarity=0.460 Sum_probs=71.5
Q ss_pred cccccccceeeccccccchhhhhhhcC--CCceeeeEEeechhhhhhhchhhhHHHHHHhhCCCcccccccccccC
Q psy1630 2 YLTTYDLACVCCRENLANDAYLLSQMD--NDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKVRP 75 (149)
Q Consensus 2 ~~i~~q~e~yfs~~Nl~~d~~l~~~~~--~~g~vpi~~~~~F~kvk~l~~d~~~i~~al~~S~~lev~~d~~~vrr 75 (149)
..|++||||||||+||++|.||+++|+ ++|||||+++++|+||++|+.|.+.|.+||+.|+.||+++++++|||
T Consensus 7 ~~I~~QvEfYFSd~NL~~D~fL~~~~~~~~dG~Vpl~~i~~F~rmk~lt~d~~~i~~Al~~S~~lev~ed~~~VRR 82 (82)
T cd08032 7 ADIAKQVDFWFGDVNLHKDRFLREQIEKSRDGYIDISLLVSFNKMKKLTTDGKLIARALKNSSVVELNLEGTRIRR 82 (82)
T ss_pred HHHHHHHHhhcchhhcccCHHHHHHhcCCCCCCEeHHHHhcchHHHHHcCCHHHHHHHHhcCCEEEEcCCCCccCC
Confidence 458999999999999999999999997 79999999999999999999999999999999999999999999997
No 8
>smart00715 LA Domain in the RNA-binding Lupus La protein; unknown function.
Probab=99.97 E-value=3.6e-32 Score=176.50 Aligned_cols=74 Identities=45% Similarity=0.713 Sum_probs=71.8
Q ss_pred ccccccceeeccccccchhhhhhhcCC-CceeeeEEeechhhhhhhchhhhHHHHHHhhCCCcccccccccccCC
Q psy1630 3 LTTYDLACVCCRENLANDAYLLSQMDN-DQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKVRPN 76 (149)
Q Consensus 3 ~i~~q~e~yfs~~Nl~~d~~l~~~~~~-~g~vpi~~~~~F~kvk~l~~d~~~i~~al~~S~~lev~~d~~~vrr~ 76 (149)
.|++||||||||+||++|.||+++|+. +|||||+++++|+||++++.|.+.|.+||+.|+.|++++|+.+|||.
T Consensus 6 ~i~~QvEfYFSd~NL~~D~fLr~~~~~~~g~Vpl~~i~~F~r~k~l~~d~~~i~~Al~~S~~lel~~d~~~VRR~ 80 (80)
T smart00715 6 KIKKQVEYYFSDENLPRDKFLRKKMDKNDGYVPISTIASFKRVKSLTTDVNLIVEALRSSPKLEVSEDGLKVRRR 80 (80)
T ss_pred HHHHHHHHHcCHhhhhhCHHHHHHhccCCCCEEhHHHhCchhHHHHcCCHHHHHHHHHhCCeEEEcCCCCeeCcC
Confidence 589999999999999999999999996 99999999999999999999999999999999999999999999984
No 9
>cd08029 LA_like_fungal La-motif domain of fungal proteins similar to the La autoantigen. This domain is found in fungal proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.97 E-value=6.7e-32 Score=173.45 Aligned_cols=72 Identities=29% Similarity=0.473 Sum_probs=69.2
Q ss_pred ccccccceeeccccccchhhhhhhc--CCCceeeeEEeechhhhhhhchhhhHHHHHHhhCCCcccccccccccC
Q psy1630 3 LTTYDLACVCCRENLANDAYLLSQM--DNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKVRP 75 (149)
Q Consensus 3 ~i~~q~e~yfs~~Nl~~d~~l~~~~--~~~g~vpi~~~~~F~kvk~l~~d~~~i~~al~~S~~lev~~d~~~vrr 75 (149)
.|++||||||||+||++|.||+++| +++|||||++|++|+||++|+.+ +.|.+||+.|+.|+|++||.+|||
T Consensus 3 ~I~~QvEfYFSd~NL~~D~fLr~~~~~~~~G~Vpl~~i~~F~rmk~l~~~-~~i~~Al~~S~~lev~~d~~~VRR 76 (76)
T cd08029 3 EIRKQVEFYFSDSNLPTDKFLWTLTGGSNNGWVPIKTIASFKRMRRFQPL-EAVVEALRESELLEVSEDGENVRR 76 (76)
T ss_pred HHHhhHHhhcCHhhhccCHHHHHHhccCCCCcEehHHHhCchHHHHcCCH-HHHHHHHHhCCeEEEeCCCCcccC
Confidence 5899999999999999999999999 49999999999999999999976 999999999999999999999997
No 10
>cd08028 LARP_3 La RNA-binding domain of La-related protein 3. This domain is found at the N-terminus of the La autoantigen and similar proteins, and co-occurs with an RNA-recognition motif (RRM). Together these domains function to bind primary transcripts of RNA polymerase III at their 3' terminus and protect them from exonucleolytic degradation. Binding is specific for the 3'-terminal UUU-OH motif. The La autoantigen is also called Lupus La protein, LARP3, or Sjoegren syndrome type B antigen (SS-B).
Probab=99.96 E-value=1e-31 Score=174.67 Aligned_cols=73 Identities=27% Similarity=0.457 Sum_probs=70.7
Q ss_pred ccccccceeeccccccchhhhhhhcC-CCceeeeEEeechhhhhhhchhhhHHHHHHhhCC--CcccccccccccC
Q psy1630 3 LTTYDLACVCCRENLANDAYLLSQMD-NDQYVPIWTVANFNQVKKLTKDIKLITEVLRESP--NVQVDEEGIKVRP 75 (149)
Q Consensus 3 ~i~~q~e~yfs~~Nl~~d~~l~~~~~-~~g~vpi~~~~~F~kvk~l~~d~~~i~~al~~S~--~lev~~d~~~vrr 75 (149)
.|++||||||||+||++|.||+++|+ ++|||||++|++|+|||+++.|.+.|.+||+.|+ .|||++|+.+|||
T Consensus 7 ~I~~QvEfYFSd~NL~~D~fLr~~m~~~~G~Vpl~~i~~F~rmk~l~~d~~~i~~Al~~S~~~~lev~~d~~~VRR 82 (82)
T cd08028 7 KIIRQIEYYFGDFNLPRDKFLKEQIKEDDGWVPMEVMLKFNRLKSLSSDPEVIAKALKKSKSGLIEVSEDKTKIRR 82 (82)
T ss_pred HHHHHHHhhcCHhhhccCHHHHHHHhccCCCEEhHHHhCChhHHHhcCCHHHHHHHHHhCCCCEEEEcCCCCccCC
Confidence 47899999999999999999999997 6999999999999999999999999999999999 9999999999997
No 11
>cd08038 LARP_2 La RNA-binding domain of La-related protein 2. This domain is found in vertebrate La-related protein 2 (LARP2). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.96 E-value=9.6e-32 Score=170.54 Aligned_cols=70 Identities=30% Similarity=0.495 Sum_probs=67.1
Q ss_pred cccccccceeeccccccchhhhhhhcCCCceeeeEEeechhhhhhhchhhhHHHHHHhhCCCcccccccc
Q psy1630 2 YLTTYDLACVCCRENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGI 71 (149)
Q Consensus 2 ~~i~~q~e~yfs~~Nl~~d~~l~~~~~~~g~vpi~~~~~F~kvk~l~~d~~~i~~al~~S~~lev~~d~~ 71 (149)
..|++||||||||+||++|.||+++|+++|||||+++++|+||++|+.|.+.|.+||+.|+.||+++++.
T Consensus 2 e~I~~QvEfYFSd~NL~~D~fLr~~m~~~G~Vpl~~ia~F~rmk~lt~d~~~I~~Al~~S~~ve~~~~~~ 71 (73)
T cd08038 2 EYIKRQIEYYFSTENLERDFFLRRKMDLQGFLPISLIAGFYRVQALTTNVDLILEALKDSTEVEIVDQKI 71 (73)
T ss_pred hHHHhhHHhhcchhhhccCHHHHHHhCCCCCEeHHHHhcchHHHHhcCCHHHHHHHHHcCCeEEEeCCcc
Confidence 3589999999999999999999999999999999999999999999999999999999999999998764
No 12
>cd07323 LAM LA motif RNA-binding domain. This domain is found at the N-terminus of La RNA-binding proteins as well as in other related proteins. Typically, the domain co-occurs with an RNA-recognition motif (RRM), and together these domains function to bind primary transcripts of RNA polymerase III in the La autoantigen (Lupus La protein, LARP3, or Sjoegren syndrome type B antigen, SS-B). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.96 E-value=1.4e-31 Score=172.06 Aligned_cols=75 Identities=44% Similarity=0.643 Sum_probs=72.5
Q ss_pred CcccccccceeeccccccchhhhhhhcCCCceeeeEEeechhhhhhhchhhhHHHHHHhhCCCcccccccccccC
Q psy1630 1 MYLTTYDLACVCCRENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKVRP 75 (149)
Q Consensus 1 ~~~i~~q~e~yfs~~Nl~~d~~l~~~~~~~g~vpi~~~~~F~kvk~l~~d~~~i~~al~~S~~lev~~d~~~vrr 75 (149)
+..|++||||||||+||++|.||+++|+++|||||+++++|+||++++.|.+.|.+|++.|+.|++++++.+|||
T Consensus 1 ~~~i~~QvEfYFSd~NL~~D~fL~~~~~~~g~Vpl~~i~~F~r~k~l~~~~~~i~~Al~~s~~lel~~~~~~Vrr 75 (75)
T cd07323 1 LEKIKKQVEYYFSDENLCKDRFLRSLMDDDGWVPLSLLASFNRVKKLTTDVELILEALRDSSVVEVSEDGTKVRR 75 (75)
T ss_pred ChHHHhhhHhccCHhhhCcCHHHHHhcCCCCCEEHHHHhCchHHHHHcCCHHHHHHHHHhCCeEEEeCCCCccCC
Confidence 356899999999999999999999999999999999999999999999999999999999999999999999986
No 13
>cd08037 LARP_1 La RNA-binding domain of La-related protein 1. This domain is found in vertebrate La-related protein 1 (LARP1). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.96 E-value=8.4e-32 Score=170.82 Aligned_cols=70 Identities=30% Similarity=0.494 Sum_probs=66.9
Q ss_pred cccccccceeeccccccchhhhhhhcCCCceeeeEEeechhhhhhhchhhhHHHHHHhhCCCcccccccc
Q psy1630 2 YLTTYDLACVCCRENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGI 71 (149)
Q Consensus 2 ~~i~~q~e~yfs~~Nl~~d~~l~~~~~~~g~vpi~~~~~F~kvk~l~~d~~~i~~al~~S~~lev~~d~~ 71 (149)
+.|++||||||||+||++|.||+++|+++|||||+++++|+||++|+.|.+.|.+||+.|+.||++++..
T Consensus 2 ~~I~~QvEyYFSd~NL~~D~fLr~~md~dG~Vpi~~ia~F~rmk~Lt~d~~~I~~Al~~S~~vev~~~~~ 71 (73)
T cd08037 2 DYIKRQIEYYFSVDNLERDFFLRRKMDEDGFLPVTLIASFHRVQALTTDISLIIKALKDSKVVEIIDMKI 71 (73)
T ss_pred hHHHHHHHHhccHhhhccCHHHHHHhccCCCEeHHHHhcchHHHHhcCCHHHHHHHHHcCCeEEEecchh
Confidence 3689999999999999999999999999999999999999999999999999999999999999998753
No 14
>cd08034 LARP_1_2 La RNA-binding domain proteins similar to La-related proteins 1 and 2. This domain is found in proteins similar to vertebrate La-related proteins 1 and 2 (LARP1, LARP2). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.96 E-value=1.2e-31 Score=170.69 Aligned_cols=72 Identities=33% Similarity=0.510 Sum_probs=68.0
Q ss_pred cccccccceeeccccccchhhhhhhcCCCceeeeEEeechhhhhhhchhhhHHHHHHhhCCCcccccccccccC
Q psy1630 2 YLTTYDLACVCCRENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKVRP 75 (149)
Q Consensus 2 ~~i~~q~e~yfs~~Nl~~d~~l~~~~~~~g~vpi~~~~~F~kvk~l~~d~~~i~~al~~S~~lev~~d~~~vrr 75 (149)
..|++||||||||+||++|.||+++|+++|||||+++++|+||++++.|.+.|.+||+.|+.|++++ .+||+
T Consensus 2 ~~i~~QvEfYFSd~NL~~D~fLr~~m~~~G~Vpl~~i~~F~rmk~l~~d~~~i~~Al~~S~~lev~e--~kvR~ 73 (73)
T cd08034 2 EYIKKQIEYYFSVDNLEKDFFLRRKMDPEGYLPIALIASFHRVQALTTDVNLILEALKDSTVVELVD--EKVRC 73 (73)
T ss_pred hHHHhhHHhhcCHhhhccCHHHHHHcCCCCCEeHHHHhccHHHHHHcCCHHHHHHHHHcCCeEEEec--CeecC
Confidence 3589999999999999999999999999999999999999999999999999999999999999998 55653
No 15
>cd08030 LA_like_plant La-motif domain of plant proteins similar to the La autoantigen. This domain is found in plant proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.96 E-value=7.1e-31 Score=173.00 Aligned_cols=73 Identities=26% Similarity=0.418 Sum_probs=68.7
Q ss_pred ccccccceeeccccccchhhhhhhc--CCCceeeeEEeechhhhhhhchh------------hhHHHHHHhhCCCccccc
Q psy1630 3 LTTYDLACVCCRENLANDAYLLSQM--DNDQYVPIWTVANFNQVKKLTKD------------IKLITEVLRESPNVQVDE 68 (149)
Q Consensus 3 ~i~~q~e~yfs~~Nl~~d~~l~~~~--~~~g~vpi~~~~~F~kvk~l~~d------------~~~i~~al~~S~~lev~~ 68 (149)
-|++||||||||+||++|.||+++| +++|||||++|++|+||++|+.+ .+.|++||+.|+.|+|++
T Consensus 4 ~i~~QvEfYFSd~NL~~D~fL~~~~~~~~dG~V~i~~i~~F~rmk~l~~~~~~~~~~~~~~~~~~I~~ALk~S~~levse 83 (90)
T cd08030 4 KVLRQVEFYFSDSNLPRDDFLLEEVEEDPDGMVSLALICSFSRMRSLLGLGGGKPEDVPEDTLKAVAEALRTSTLLKVSE 83 (90)
T ss_pred HHHHHHHcccchhhcccCHHHHHHhccCCCCCEehHHHhcChHHHHHhhcccccccccchhHHHHHHHHHccCCEEEEcC
Confidence 4789999999999999999999999 58999999999999999999853 679999999999999999
Q ss_pred ccccccC
Q psy1630 69 EGIKVRP 75 (149)
Q Consensus 69 d~~~vrr 75 (149)
|+++|||
T Consensus 84 D~~~VRR 90 (90)
T cd08030 84 DGKRVGR 90 (90)
T ss_pred CCCccCC
Confidence 9999997
No 16
>PF05383 La: La domain; InterPro: IPR006630 Human Ro ribonucleoproteins (RNPs) are composed of one of the four small Y RNAs and at least two proteins, Ro60 and La. The La protein is a 47 kDa polypeptide that frequently acts as an autoantigen in systemic lupus erythematosus and Sjogren's syndrome []. In the nucleus, La acts as a RNA polymerase III (RNAP III) transcription factor, while in the cytoplasm, La acts as a translation factor []. In the nucleus, La binds to the 3'UTR of nascent RNAP III transcripts to assist in folding and maturation []. In the cytoplasm, La recognises specific classes of mRNAs that contain a 5'-terminal oligopyrimidine (5'TOP) motif known to control protein synthesis []. The specific recognition is mediated by the N-terminal domain of La, which comprises a La motif and a RNA recognition motif (RRM). The La motif adopts an alpha/beta fold that comprises a winged-helix motif []. Homologous La domain-containing proteins have been identified in a wide range of organisms except Archaea, bacteria and viruses [].; PDB: 1S29_A 1YTY_B 2VOO_B 1S7A_A 2VOP_A 2VON_B 1ZH5_B 2VOD_A 2CQK_A.
Probab=99.93 E-value=1.6e-27 Score=147.33 Aligned_cols=58 Identities=45% Similarity=0.676 Sum_probs=52.9
Q ss_pred cccccceeeccccccchhhhhhhcCC--CceeeeEEeechhhhhhhc-hhhhHHHHHHhhC
Q psy1630 4 TTYDLACVCCRENLANDAYLLSQMDN--DQYVPIWTVANFNQVKKLT-KDIKLITEVLRES 61 (149)
Q Consensus 4 i~~q~e~yfs~~Nl~~d~~l~~~~~~--~g~vpi~~~~~F~kvk~l~-~d~~~i~~al~~S 61 (149)
|++||||||||+||++|+||+++|+. +|||||+++++|+||++++ .|.+.|.+||+.|
T Consensus 1 I~~QvEfYFSd~NL~~D~fL~~~~~~~~~g~Vpi~~i~~F~r~k~l~~~~~~~I~~al~~S 61 (61)
T PF05383_consen 1 IKKQVEFYFSDENLPRDKFLRSQMDSNPDGWVPISTILSFNRMKALTNTDIELIVDALRDS 61 (61)
T ss_dssp HHHHHHHHTSHHHHCC-HHHHHHHCTTTTTBEEHHHHTTSHHHHHH--S-HHHHHHHHHTS
T ss_pred ChhHHHHhcCHHHhCcCHHHHHHHHhcCCCcEeHHHHHchHHHHHHhcCCHHHHHHHHHcC
Confidence 68999999999999999999999985 9999999999999999999 8999999999987
No 17
>KOG4213|consensus
Probab=99.89 E-value=3.8e-24 Score=155.37 Aligned_cols=129 Identities=24% Similarity=0.309 Sum_probs=109.9
Q ss_pred cccccceeeccccccchhhhhhhcC--CCceeeeEEeechhhhhhhchhhhHHHHHHhhCC--CcccccccccccCCC--
Q psy1630 4 TTYDLACVCCRENLANDAYLLSQMD--NDQYVPIWTVANFNQVKKLTKDIKLITEVLRESP--NVQVDEEGIKVRPNH-- 77 (149)
Q Consensus 4 i~~q~e~yfs~~Nl~~d~~l~~~~~--~~g~vpi~~~~~F~kvk~l~~d~~~i~~al~~S~--~lev~~d~~~vrr~~-- 77 (149)
|..||||||+|.||+||+||+.++. .+|||||.++..|+|+.++++|.+.|+.||+.|. .+++|+|++++||.+
T Consensus 17 ii~qleyy~Gd~nl~rdkfl~eqi~k~~~gwvpi~i~i~FnRla~lttD~~~Iv~al~ksk~~l~eisedk~k~rr~~sk 96 (205)
T KOG4213|consen 17 IIHQLEYYFGDLNLPRDKFLREQIHKLDDGWVPIEIMIKFNRLASLTTDFNVIVEALSKSKAELMEISEDKTKIRRSPSK 96 (205)
T ss_pred hhhhhhhhhcccCchHHHHHHHHhhhhccCCccchhhhhhhhhhhccccHHHHHHHHhhCHHhhhhhhhchhhhhcCcCC
Confidence 5789999999999999999999994 8999999999999999999999999999999985 589999999999764
Q ss_pred -------------ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee------eecCeeEEEEeccHHHHHHHHHH
Q psy1630 78 -------------KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF------AHNNSWYITFENDEDAQKAYRYL 136 (149)
Q Consensus 78 -------------~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~------~~kg~afVeF~~~e~A~~Ai~~l 136 (149)
..+++|.. |.+...++|..+-+ |.+..+.+++ .++|..||+|.+.+.|...++.-
T Consensus 97 plpEvt~e~~~~~~~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~~ 170 (205)
T KOG4213|consen 97 PLPEVTDEYKEGIKERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDTH 170 (205)
T ss_pred CCccccHHHHHHHHHhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhhh
Confidence 24677766 55556666666666 7778888853 47899999999999998766543
No 18
>KOG0121|consensus
Probab=99.67 E-value=1.6e-16 Score=110.50 Aligned_cols=90 Identities=21% Similarity=0.291 Sum_probs=75.7
Q ss_pred chhhhhhhchhhhHHHHHHhhCCCcccccccccccCCCceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----e
Q psy1630 40 NFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKVRPNHKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----A 114 (149)
Q Consensus 40 ~F~kvk~l~~d~~~i~~al~~S~~lev~~d~~~vrr~~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~ 114 (149)
++.+.+.+..+.+.-.+|++.| +||||+||+..+++|+|.++|+++|.|+.|-|.. .
T Consensus 15 s~Yr~~~f~gt~~e~~~a~r~S------------------~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kkt 76 (153)
T KOG0121|consen 15 SAYRDRRFRGTDEEQLEALRKS------------------CTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKT 76 (153)
T ss_pred hHHHHHHhcCchHHHHHHHhhc------------------ceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcC
Confidence 3445555555556666666655 4999999999999999999999999999998853 4
Q ss_pred ecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 115 HNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 115 ~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
++|||||||.+.++|+.|++.+++ ..++.++|+
T Consensus 77 pCGFCFVeyy~~~dA~~Alryisg--trLddr~ir 109 (153)
T KOG0121|consen 77 PCGFCFVEYYSRDDAEDALRYISG--TRLDDRPIR 109 (153)
T ss_pred ccceEEEEEecchhHHHHHHHhcc--Cccccccee
Confidence 899999999999999999999999 699999884
No 19
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.65 E-value=1e-16 Score=100.06 Aligned_cols=66 Identities=23% Similarity=0.359 Sum_probs=60.8
Q ss_pred EEeecCCCCCcHHHHHhhhCCCCCCceeeeee----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 82 VILREIPDSTPLEEIRGLFSGKSCPRFISCEF----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 82 l~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
|||+|||+++|+++|+++|++||.+..+.+.. .++|+|||+|+++++|++|++.++| ..+.|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g--~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNG--KKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTT--EEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCC--CEECccCcC
Confidence 79999999999999999999999998877754 3789999999999999999999999 799999875
No 20
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.62 E-value=5.7e-16 Score=111.27 Aligned_cols=71 Identities=10% Similarity=0.091 Sum_probs=63.8
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
...++|||+|||+++|+++|+++|++||.|..+.+.. .++|||||+|+++++|++|++.|++ ..++|++|+
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng--~~i~Gr~l~ 107 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDG--KELNGRHIR 107 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCC--CEECCEEEE
Confidence 4567899999999999999999999999998888754 3689999999999999999999998 689998874
No 21
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=1.9e-15 Score=121.59 Aligned_cols=130 Identities=21% Similarity=0.283 Sum_probs=112.4
Q ss_pred cccccceeec-----cccccchhhhhhhcC----CCceeeeEEeechhhhhhhchhhhHHHHHHhhC---CCcccccccc
Q psy1630 4 TTYDLACVCC-----RENLANDAYLLSQMD----NDQYVPIWTVANFNQVKKLTKDIKLITEVLRES---PNVQVDEEGI 71 (149)
Q Consensus 4 i~~q~e~yfs-----~~Nl~~d~~l~~~~~----~~g~vpi~~~~~F~kvk~l~~d~~~i~~al~~S---~~lev~~d~~ 71 (149)
+..|+||||| |.|..+|+|++..-. .+|||||.++.+|++|+..+...+.+..|++.| ..++++.+|.
T Consensus 75 ~l~qvE~~fS~s~~~d~n~~~dk~~ktta~Kn~~~~kwVpIkt~~tfn~~k~~gs~~~~v~~a~rks~~~rv~e~Sssgs 154 (438)
T COG5193 75 TLKQVEFYFSGSKDTDSNFPKDKFLKTTAPKNKKRDKWVPIKTIATFNRMKNSGSPVSAVSGALRKSLDARVLEVSSSGS 154 (438)
T ss_pred cccceeEEeeccccccccccchhhhccccccccCCCCceeeeeeeeeccccccCCchhhhhhhhhcCcccceeeeccccc
Confidence 5679999999 999999999999864 499999999999999999999999999999999 6899999998
Q ss_pred cccCCC------------ceeEEEeecCCCCCc--------HHHHHhhhCC--CCCCceeeeee-----eecCeeEEEEe
Q psy1630 72 KVRPNH------------KRCIVILREIPDSTP--------LEEIRGLFSG--KSCPRFISCEF-----AHNNSWYITFE 124 (149)
Q Consensus 72 ~vrr~~------------~~~tl~v~~lp~~~t--------~~~l~~~F~~--~G~v~~v~~~~-----~~kg~afVeF~ 124 (149)
.++|.. ..+.+|+.+++...+ .+++...|.. +|.+..+++++ .++|+.|++|.
T Consensus 155 n~~r~~k~~s~n~~s~~~~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk 234 (438)
T COG5193 155 NKNRTEKLISNNNKSTSQMQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFK 234 (438)
T ss_pred cccccchhhhhhhhhhhhHhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCccccccc
Confidence 877653 246789999987544 4489999999 67788888865 37899999999
Q ss_pred ccHHHHHHH
Q psy1630 125 NDEDAQKAY 133 (149)
Q Consensus 125 ~~e~A~~Ai 133 (149)
....|+++.
T Consensus 235 ~~~~~q~~n 243 (438)
T COG5193 235 YFREAQRFN 243 (438)
T ss_pred ChHHHHHHh
Confidence 999999875
No 22
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.55 E-value=3.5e-15 Score=93.78 Aligned_cols=66 Identities=23% Similarity=0.375 Sum_probs=57.6
Q ss_pred EEeecCCCCCcHHHHHhhhCCCCCCceeeeeee----ecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 82 VILREIPDSTPLEEIRGLFSGKSCPRFISCEFA----HNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 82 l~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~----~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
|+|+|||+++++++|+++|+.+|.|..+.+... ++|+|||+|.++++|++|++.+++ ..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~--~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNG--KEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTT--EEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCC--cEECCEEcC
Confidence 789999999999999999999999888877543 589999999999999999999886 799999874
No 23
>KOG0107|consensus
Probab=99.53 E-value=6.7e-15 Score=107.16 Aligned_cols=69 Identities=19% Similarity=0.229 Sum_probs=64.3
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKES 148 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i 148 (149)
-.+.|||+||+..++..+|+..|+.||++..|++...+.|||||||+++-||+.|+..||| +.|-|..|
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG--~~~cG~r~ 77 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDG--KDICGSRI 77 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCC--ccccCceE
Confidence 3578999999999999999999999999999999889999999999999999999999999 78888654
No 24
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.52 E-value=8.8e-15 Score=117.68 Aligned_cols=67 Identities=12% Similarity=0.105 Sum_probs=62.4
Q ss_pred EEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 81 IVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 81 tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
+|||+|||.++++++|+++|++||.|..+++.. .++|||||+|++.++|.+|++.||| ..|+||+|+
T Consensus 271 ~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG--~~~~gr~i~ 342 (352)
T TIGR01661 271 CIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNG--YTLGNRVLQ 342 (352)
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCC--CEECCeEEE
Confidence 699999999999999999999999999988854 3699999999999999999999999 799999884
No 25
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.51 E-value=1.5e-14 Score=111.94 Aligned_cols=68 Identities=15% Similarity=0.217 Sum_probs=61.8
Q ss_pred eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeee--ecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFA--HNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~--~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.++|||+|||+.+|+++|+++|+.||.|..+.+..+ ++|||||+|+++++|+.|+. |+| ..+.|++|+
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG--~~l~gr~V~ 73 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSG--ATIVDQSVT 73 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcC--CeeCCceEE
Confidence 368999999999999999999999999999998653 68999999999999999995 888 799999873
No 26
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.50 E-value=1.9e-14 Score=115.74 Aligned_cols=70 Identities=26% Similarity=0.287 Sum_probs=63.1
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
+..+|||+|||.++|+++|+++|++||+|..+++.+ .++|||||+|.++++|++|++.||| ..+.|++|+
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g--~~l~g~~i~ 76 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNG--LRLQNKTIK 76 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhccc--EEECCeeEE
Confidence 357899999999999999999999999998888743 3789999999999999999999999 799998873
No 27
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.48 E-value=4.2e-14 Score=114.60 Aligned_cols=71 Identities=18% Similarity=0.192 Sum_probs=64.1
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
...++|||++||+++|+++|+++|++||.|..+++.. .++|||||+|+++++|++|++.|++ ..+.|++|+
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG--~~l~gr~i~ 180 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNG--ITVRNKRLK 180 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCC--CccCCceee
Confidence 3578999999999999999999999999998887743 3679999999999999999999998 799999875
No 28
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.45 E-value=1.6e-13 Score=111.29 Aligned_cols=124 Identities=10% Similarity=0.074 Sum_probs=89.4
Q ss_pred hhhhhhcCCCcee-eeEEeechh--hhhhh----chhhhHHHHHHhhCCCcccccccccccCC------CceeEEEeecC
Q psy1630 21 AYLLSQMDNDQYV-PIWTVANFN--QVKKL----TKDIKLITEVLRESPNVQVDEEGIKVRPN------HKRCIVILREI 87 (149)
Q Consensus 21 ~~l~~~~~~~g~v-pi~~~~~F~--kvk~l----~~d~~~i~~al~~S~~lev~~d~~~vrr~------~~~~tl~v~~l 87 (149)
.-|++.+...|-| .+.++..-+ +-+.+ -.|.+....|++.-....+.....+|... ...++|||.||
T Consensus 122 ~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~p~~~~~~~~~lfV~nL 201 (346)
T TIGR01659 122 RELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYARPGGESIKDTNLYVTNL 201 (346)
T ss_pred HHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecccccccccccceeEEeCC
Confidence 4456666555543 455544322 11221 25788888999876666665555555321 23568999999
Q ss_pred CCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCc
Q psy1630 88 PDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNK 146 (149)
Q Consensus 88 p~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~ 146 (149)
|.++|+++|+++|++||.|..+.+.. .++|||||+|++.++|++|++.|++ ..+.|+
T Consensus 202 p~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng--~~~~g~ 263 (346)
T TIGR01659 202 PRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNN--VIPEGG 263 (346)
T ss_pred CCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCC--CccCCC
Confidence 99999999999999999998887754 2579999999999999999999998 577663
No 29
>KOG0114|consensus
Probab=99.44 E-value=1.6e-13 Score=92.32 Aligned_cols=69 Identities=23% Similarity=0.259 Sum_probs=62.4
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeee--eeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCE--FAHNNSWYITFENDEDAQKAYRYLREDVREFQNKES 148 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~--~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i 148 (149)
-.+.|||+|||.++|.|+..++|++||.|+.|++. ...+|.|||.|++..+|.+|+++|+| -.+.++.+
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg--~n~~~ryl 87 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSG--YNVDNRYL 87 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcc--cccCCceE
Confidence 35789999999999999999999999999999884 35899999999999999999999999 57777754
No 30
>smart00362 RRM_2 RNA recognition motif.
Probab=99.41 E-value=1.9e-13 Score=84.15 Aligned_cols=66 Identities=20% Similarity=0.304 Sum_probs=59.1
Q ss_pred EEEeecCCCCCcHHHHHhhhCCCCCCceeeeeee---ecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630 81 IVILREIPDSTPLEEIRGLFSGKSCPRFISCEFA---HNNSWYITFENDEDAQKAYRYLREDVREFQNKES 148 (149)
Q Consensus 81 tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~---~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i 148 (149)
+|+|+|+|..++.++|+++|+++|.+..+.+... ++|+|||+|.+.++|++|++.+++ ..+.|++|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~--~~~~~~~i 69 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNG--TKLGGRPL 69 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCC--cEECCEEE
Confidence 5899999999999999999999999888777543 479999999999999999999987 68888876
No 31
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.41 E-value=4.2e-13 Score=115.03 Aligned_cols=129 Identities=11% Similarity=0.050 Sum_probs=93.3
Q ss_pred chhhhhhhcCCCcee-eeEEeech--hhhhhh----chhhhHHHHHHhhCCCcccccccccccCC---------------
Q psy1630 19 NDAYLLSQMDNDQYV-PIWTVANF--NQVKKL----TKDIKLITEVLRESPNVQVDEEGIKVRPN--------------- 76 (149)
Q Consensus 19 ~d~~l~~~~~~~g~v-pi~~~~~F--~kvk~l----~~d~~~i~~al~~S~~lev~~d~~~vrr~--------------- 76 (149)
++..|++.+..-|-| .+.++..- .+-+.+ ..+.+....|++......+.....+|++.
T Consensus 120 tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~~~p~a~~~~~~~~~ 199 (612)
T TIGR01645 120 REDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPIIDMVQE 199 (612)
T ss_pred CHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccccccccccccccccc
Confidence 356677777666643 44443321 122222 24678888888766555554443444321
Q ss_pred --CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 77 --HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 77 --~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
...++|||+|||.++++++|+++|+.||.|..+++.. .++|||||+|++.++|.+|++.||+ .+++|+.|+
T Consensus 200 ~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg--~elgGr~Lr 277 (612)
T TIGR01645 200 EAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNL--FDLGGQYLR 277 (612)
T ss_pred cccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCC--CeeCCeEEE
Confidence 1236899999999999999999999999999888754 3789999999999999999999999 799999874
No 32
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.39 E-value=2.9e-13 Score=116.00 Aligned_cols=70 Identities=20% Similarity=0.231 Sum_probs=63.9
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
..++|||+|||+++++++|+++|++||.|..+++.. .++|||||+|+++++|++|++.||| ..+.||+|+
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG--~~i~GR~Ik 180 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNG--QMLGGRNIK 180 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCC--eEEecceee
Confidence 357899999999999999999999999999888743 3799999999999999999999998 799999874
No 33
>KOG0125|consensus
Probab=99.38 E-value=3e-13 Score=106.78 Aligned_cols=68 Identities=18% Similarity=0.154 Sum_probs=63.4
Q ss_pred eeEEEeecCCCCCcHHHHHhhhCCCCCCceeee---eeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630 79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISC---EFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKES 148 (149)
Q Consensus 79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~---~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i 148 (149)
.+.|+|.|||...-+.||+.+|.+||.|..|.| ++++|||+||+|++++||++|=++|+| ..++||.|
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHg--t~VEGRkI 166 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHG--TVVEGRKI 166 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhc--ceeeceEE
Confidence 467999999999999999999999999888877 468999999999999999999999999 69999987
No 34
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.36 E-value=6.1e-13 Score=101.83 Aligned_cols=67 Identities=10% Similarity=0.133 Sum_probs=61.0
Q ss_pred eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee--eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630 79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF--AHNNSWYITFENDEDAQKAYRYLREDVREFQNKES 148 (149)
Q Consensus 79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~--~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i 148 (149)
..||+|+||++.+|+++|+++|+.||.|..|.+.+ ..+|+|||+|+++++|+.|+ .|+| .++.|++|
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnG--a~l~d~~I 73 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSG--ATIVDQRV 73 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCC--CeeCCceE
Confidence 47999999999999999999999999999999865 36789999999999999999 6888 68988876
No 35
>KOG0122|consensus
Probab=99.35 E-value=1.5e-12 Score=99.28 Aligned_cols=65 Identities=15% Similarity=0.180 Sum_probs=58.5
Q ss_pred CCCceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHH
Q psy1630 75 PNHKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLRED 139 (149)
Q Consensus 75 r~~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~ 139 (149)
.+.+.+||-|.|||.++++++|+++|.+||.+..+.+.+ .++|||||.|++.++|.+||+.|||.
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~ 254 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGY 254 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCc
Confidence 344678999999999999999999999999998887754 38999999999999999999999984
No 36
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.34 E-value=9.8e-13 Score=110.74 Aligned_cols=70 Identities=10% Similarity=0.121 Sum_probs=61.9
Q ss_pred eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.++|||+|||+++|+++|+++|++||.|..+.+.. .+|+|||+|+++++|++|++.++.++..+.|++|+
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~-~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~ 71 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP-GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAF 71 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC-CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEE
Confidence 47899999999999999999999999998887653 68999999999999999999876555789998763
No 37
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.33 E-value=1.1e-12 Score=110.51 Aligned_cols=70 Identities=11% Similarity=0.101 Sum_probs=63.8
Q ss_pred ceeEEEeecCCC-CCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 78 KRCIVILREIPD-STPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 78 ~~~tl~v~~lp~-~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
+.++|||+|||+ .+|+++|+++|+.||.|..+.+....+|+|||+|++.++|+.|++.|+| ..+.|++|+
T Consensus 274 ~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~lng--~~l~g~~l~ 344 (481)
T TIGR01649 274 PGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKKETALIEMADPYQAQLALTHLNG--VKLFGKPLR 344 (481)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCC--CEECCceEE
Confidence 457999999998 6999999999999999998887666789999999999999999999999 699999874
No 38
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.32 E-value=1.1e-12 Score=111.97 Aligned_cols=67 Identities=13% Similarity=0.158 Sum_probs=61.0
Q ss_pred EEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 81 IVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 81 tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
+|||+|||.++|+++|+++|++||.|..|++.+ .++|||||+|.+.++|++|++.+++ ..+.|++|+
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~--~~i~gk~i~ 73 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNF--KRLGGKPIR 73 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCC--CEECCeeEE
Confidence 799999999999999999999999998888743 3679999999999999999999988 679999874
No 39
>KOG0131|consensus
Probab=99.32 E-value=1.7e-12 Score=95.17 Aligned_cols=70 Identities=14% Similarity=0.180 Sum_probs=64.8
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
...||||+||+..++++.|.++|-+.|+|..+++++ .++||||+||.++|+|+-|++-||. -.+-|||||
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~--VkLYgrpIr 82 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNM--VKLYGRPIR 82 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHH--HHhcCceeE
Confidence 457999999999999999999999999999999875 3799999999999999999999998 599999986
No 40
>PLN03213 repressor of silencing 3; Provisional
Probab=99.32 E-value=1.8e-12 Score=107.27 Aligned_cols=68 Identities=10% Similarity=0.119 Sum_probs=62.2
Q ss_pred eEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-eecCeeEEEEecc--HHHHHHHHHHHHHhhhhcCccCC
Q psy1630 80 CIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-AHNNSWYITFEND--EDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 80 ~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-~~kg~afVeF~~~--e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
-+|||+||++.+|+++|+..|++||.|..|.+.+ ..+|||||+|.+. .++.+||..||| .++.||.|+
T Consensus 11 MRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNG--AEWKGR~LK 81 (759)
T PLN03213 11 VRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNG--CVWKGGRLR 81 (759)
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcC--CeecCceeE
Confidence 4699999999999999999999999999988864 3499999999998 689999999999 799999885
No 41
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.31 E-value=3.7e-12 Score=108.81 Aligned_cols=69 Identities=19% Similarity=0.228 Sum_probs=62.6
Q ss_pred eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.++|||+|||.++|+++|+++|++||.|..+.+.. .++|||||+|++.++|.+|+..+++ ..++|++|+
T Consensus 285 ~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g--~~~~gk~l~ 357 (562)
T TIGR01628 285 GVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHG--RMLGGKPLY 357 (562)
T ss_pred CCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcC--CeeCCceeE
Confidence 46799999999999999999999999998887743 3689999999999999999999999 799999873
No 42
>KOG0130|consensus
Probab=99.30 E-value=3.8e-12 Score=89.49 Aligned_cols=71 Identities=15% Similarity=0.201 Sum_probs=64.1
Q ss_pred CCceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeee-----ecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630 76 NHKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFA-----HNNSWYITFENDEDAQKAYRYLREDVREFQNKES 148 (149)
Q Consensus 76 ~~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~-----~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i 148 (149)
....+.|+|.++.+.+|+++|.+.|..||+|+.+++..+ .||||.|||++.++|++|+..+|| .++-|.+|
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng--~~ll~q~v 144 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNG--AELLGQNV 144 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccc--hhhhCCce
Confidence 346899999999999999999999999999999988532 699999999999999999999999 58888776
No 43
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.29 E-value=3.2e-12 Score=78.97 Aligned_cols=66 Identities=23% Similarity=0.348 Sum_probs=58.5
Q ss_pred EEEeecCCCCCcHHHHHhhhCCCCCCceeeeeee----ecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630 81 IVILREIPDSTPLEEIRGLFSGKSCPRFISCEFA----HNNSWYITFENDEDAQKAYRYLREDVREFQNKES 148 (149)
Q Consensus 81 tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~----~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i 148 (149)
+|+|+|||..++.++|+++|+.+|.+..+.+... ++|+|||+|.+.++|+.|++.+++ ..++|+.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~--~~~~~~~~ 70 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNG--KELGGRPL 70 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCC--CeECCeEE
Confidence 4899999999999999999999999888877553 489999999999999999999988 56888765
No 44
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.28 E-value=3.2e-12 Score=106.38 Aligned_cols=68 Identities=16% Similarity=0.183 Sum_probs=60.7
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKES 148 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i 148 (149)
+.++|||+|||..+++++|+++|++||.|..|.+.. .++|||||+|.+.++|++|+. ++| ..+.|++|
T Consensus 88 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g--~~~~g~~i 160 (457)
T TIGR01622 88 DDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTG--QMLLGRPI 160 (457)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCC--CEECCeee
Confidence 367999999999999999999999999998888743 368999999999999999996 777 68889876
No 45
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.28 E-value=4.8e-12 Score=106.54 Aligned_cols=68 Identities=7% Similarity=0.071 Sum_probs=61.2
Q ss_pred eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630 79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKES 148 (149)
Q Consensus 79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i 148 (149)
.++|||+|||..+|+++|+++|+.||.+..+.+.. .++|||||+|++.++|+.|++.|+| ..+.|+.|
T Consensus 295 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g--~~~~~~~l 367 (509)
T TIGR01642 295 KDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNG--KDTGDNKL 367 (509)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCC--CEECCeEE
Confidence 46899999999999999999999999988877643 2789999999999999999999999 68988875
No 46
>KOG0148|consensus
Probab=99.27 E-value=5.7e-12 Score=97.45 Aligned_cols=69 Identities=17% Similarity=0.209 Sum_probs=63.3
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
+++||||+|++.-.|++.++..|+.||.|..|++ ++.+|||||.|++.|.|-+||-.+|+ .++.|..+|
T Consensus 163 ~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRv-Fk~qGYaFVrF~tkEaAahAIv~mNn--tei~G~~Vk 231 (321)
T KOG0148|consen 163 DNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRV-FKDQGYAFVRFETKEAAAHAIVQMNN--TEIGGQLVR 231 (321)
T ss_pred CCceEEeCCcCccccHHHHHHhcccCCcceEEEE-ecccceEEEEecchhhHHHHHHHhcC--ceeCceEEE
Confidence 5799999999999999999999999999998887 55799999999999999999999999 699887654
No 47
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.26 E-value=5.7e-12 Score=95.25 Aligned_cols=69 Identities=19% Similarity=0.302 Sum_probs=62.6
Q ss_pred eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.++|||+|||.++|+++|.++|+++|.+..+.+.. .++|+|||+|+++++|..|++.+++ ..|.|++|+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~--~~~~~~~~~ 188 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNG--KELEGRPLR 188 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCC--CeECCceeE
Confidence 38999999999999999999999999997777643 4799999999999999999999997 799999873
No 48
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.25 E-value=4.7e-12 Score=105.34 Aligned_cols=69 Identities=14% Similarity=0.151 Sum_probs=62.7
Q ss_pred eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.++|||+|||..+|+++|+++|++||.|..+.+.. .++|||||+|.+.++|.+|++.|+| ..+.|++|+
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g--~~i~g~~i~ 259 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNG--FELAGRPIK 259 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCC--cEECCEEEE
Confidence 47899999999999999999999999998887753 3689999999999999999999999 799998874
No 49
>smart00360 RRM RNA recognition motif.
Probab=99.25 E-value=5e-12 Score=77.36 Aligned_cols=63 Identities=25% Similarity=0.355 Sum_probs=55.4
Q ss_pred eecCCCCCcHHHHHhhhCCCCCCceeeeeee-----ecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630 84 LREIPDSTPLEEIRGLFSGKSCPRFISCEFA-----HNNSWYITFENDEDAQKAYRYLREDVREFQNKES 148 (149)
Q Consensus 84 v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~-----~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i 148 (149)
|+|+|..++.++|+++|+++|.+..+.+... ++|+|||+|.+.++|.+|++.+++ ..++|+.+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~--~~~~~~~~ 68 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNG--KELDGRPL 68 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCC--CeeCCcEE
Confidence 5789999999999999999999888877542 479999999999999999999987 68888876
No 50
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.24 E-value=5.6e-12 Score=107.77 Aligned_cols=66 Identities=26% Similarity=0.273 Sum_probs=59.9
Q ss_pred eeEEEeecCCCCCcHHHHHhhhCCC--CCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 79 RCIVILREIPDSTPLEEIRGLFSGK--SCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 79 ~~tl~v~~lp~~~t~~~l~~~F~~~--G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.++|||+|||+++|+++|+++|++| |.|..|.+ .++||||+|++.++|++|++.||+ .+|+|++|+
T Consensus 233 ~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~---~rgfAFVeF~s~e~A~kAi~~lnG--~~i~Gr~I~ 300 (578)
T TIGR01648 233 VKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKK---IRDYAFVHFEDREDAVKAMDELNG--KELEGSEIE 300 (578)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEe---ecCeEEEEeCCHHHHHHHHHHhCC--CEECCEEEE
Confidence 4689999999999999999999999 98877654 578999999999999999999999 799999874
No 51
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.22 E-value=1e-11 Score=106.14 Aligned_cols=68 Identities=21% Similarity=0.289 Sum_probs=59.6
Q ss_pred eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee----eecCeeEEEEeccHHHHHHHHHHHHHhhhhc-CccC
Q psy1630 79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF----AHNNSWYITFENDEDAQKAYRYLREDVREFQ-NKES 148 (149)
Q Consensus 79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~-g~~i 148 (149)
.++|||+|||.++++++|+++|+++|.|..+++.. .++|||||+|.++|+|++|++.||+ .++. |+.|
T Consensus 58 ~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng--~~i~~Gr~l 130 (578)
T TIGR01648 58 GCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNN--YEIRPGRLL 130 (578)
T ss_pred CCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCC--CeecCCccc
Confidence 58999999999999999999999999988887643 4899999999999999999999998 4664 5543
No 52
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.21 E-value=6.2e-12 Score=75.89 Aligned_cols=52 Identities=29% Similarity=0.293 Sum_probs=44.8
Q ss_pred HHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 96 IRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 96 l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
|.++|++||.|..+.+....+|+|||+|++.++|++|++.||| ..|.|++|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~--~~~~g~~l~ 52 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNG--RQFNGRPLK 52 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTT--SEETTEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCC--CEECCcEEE
Confidence 6789999999888887554469999999999999999999999 689999874
No 53
>KOG0113|consensus
Probab=99.20 E-value=1.7e-11 Score=95.82 Aligned_cols=69 Identities=13% Similarity=0.153 Sum_probs=63.7
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKES 148 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i 148 (149)
+-+||||.-|+.+++++.|+..|+.||.|+.|++.. .++|||||||+++-+...|++..+| ..++|+.|
T Consensus 100 Py~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG--~~Idgrri 173 (335)
T KOG0113|consen 100 PYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADG--IKIDGRRI 173 (335)
T ss_pred ccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccC--ceecCcEE
Confidence 568999999999999999999999999999998854 4899999999999999999999998 79998865
No 54
>KOG4207|consensus
Probab=99.18 E-value=1.9e-11 Score=91.42 Aligned_cols=70 Identities=11% Similarity=0.162 Sum_probs=64.0
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
...+|.|.||-+-+|.++|+.+|++||.|-.|-|+. .++|||||-|....||++|++.|+| ..++|+.|.
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG--~~ldgRelr 86 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDG--AVLDGRELR 86 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcc--eeeccceee
Confidence 356899999999999999999999999999888864 4899999999999999999999999 799999873
No 55
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=2.9e-12 Score=103.46 Aligned_cols=59 Identities=19% Similarity=0.359 Sum_probs=55.7
Q ss_pred ccccccceeeccccccchhhhhhhcCCCceeeeEEeechhhhhhhchhhhHHHHHHhhC
Q psy1630 3 LTTYDLACVCCRENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRES 61 (149)
Q Consensus 3 ~i~~q~e~yfs~~Nl~~d~~l~~~~~~~g~vpi~~~~~F~kvk~l~~d~~~i~~al~~S 61 (149)
.+++|||||||-+||..|.|||++|+.+||+|+.++..|.|..++..|.+++..|++.+
T Consensus 273 a~k~QiEyYFseenl~~d~~lrkk~~kaGf~plsfi~kf~Rn~Sf~gd~nLilaa~ke~ 331 (438)
T COG5193 273 AKKEQIEYYFSEENLKSDEFLRKKFKKAGFIPLSFIGKFYRNLSFGGDKNLILAAMKEV 331 (438)
T ss_pred hHHhhhHhhhhHHhhhhhhHHHhhhhhcccccHhhhhhhhhccccCCchhhhHHHHHHH
Confidence 45679999999999999999999999999999999999999999999999999999875
No 56
>KOG0149|consensus
Probab=99.15 E-value=2.4e-11 Score=92.20 Aligned_cols=66 Identities=14% Similarity=0.068 Sum_probs=56.5
Q ss_pred eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeee-----eeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCcc
Q psy1630 79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCE-----FAHNNSWYITFENDEDAQKAYRYLREDVREFQNKE 147 (149)
Q Consensus 79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~-----~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ 147 (149)
-..|||+||||.++.|.|++.|++||+|....+- .++||++||+|.+.|+|.+|++.-+ ..++||.
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~---piIdGR~ 82 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN---PIIDGRK 82 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC---Ccccccc
Confidence 4579999999999999999999999998765442 2599999999999999999998554 4888875
No 57
>KOG0111|consensus
Probab=99.14 E-value=1.9e-11 Score=92.27 Aligned_cols=71 Identities=17% Similarity=0.241 Sum_probs=65.4
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
...|||||++|...+|+.-|...|-+||.|+.|+++. +++||+||||+..|||..|+..||+ .++-||.|+
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMne--sEL~Grtir 83 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNE--SELFGRTIR 83 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCch--hhhcceeEE
Confidence 3568999999999999999999999999999999875 4899999999999999999999999 799999874
No 58
>KOG0144|consensus
Probab=99.13 E-value=4.1e-11 Score=97.69 Aligned_cols=96 Identities=11% Similarity=0.095 Sum_probs=76.7
Q ss_pred hhhHHHHHHhhCCCccccccccccc-------CCCceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee----eecCe
Q psy1630 50 DIKLITEVLRESPNVQVDEEGIKVR-------PNHKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF----AHNNS 118 (149)
Q Consensus 50 d~~~i~~al~~S~~lev~~d~~~vr-------r~~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~----~~kg~ 118 (149)
+.+....||..-..|.---....|| |..+.+.|||+-|++.+|+.+|+++|++||.|+.+.|-+ .++||
T Consensus 88 ~a~~a~~Alhn~ktlpG~~~pvqvk~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGc 167 (510)
T KOG0144|consen 88 EADEAINALHNQKTLPGMHHPVQVKYADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGC 167 (510)
T ss_pred HHHHHHHHhhcccccCCCCcceeecccchhhhccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccce
Confidence 5567778888766554433333343 224567899999999999999999999999999988855 38999
Q ss_pred eEEEEeccHHHHHHHHHHHHHhhhhcCc
Q psy1630 119 WYITFENDEDAQKAYRYLREDVREFQNK 146 (149)
Q Consensus 119 afVeF~~~e~A~~Ai~~l~~~~~~~~g~ 146 (149)
|||.|++.|-|..|++.||+. .+.+|.
T Consensus 168 aFV~fstke~A~~Aika~ng~-~tmeGc 194 (510)
T KOG0144|consen 168 AFVKFSTKEMAVAAIKALNGT-QTMEGC 194 (510)
T ss_pred eEEEEehHHHHHHHHHhhccc-eeeccC
Confidence 999999999999999999996 666664
No 59
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.11 E-value=3.9e-11 Score=100.99 Aligned_cols=68 Identities=18% Similarity=0.132 Sum_probs=54.8
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCC------------CCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKS------------CPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQN 145 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G------------~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g 145 (149)
..++|||+|||+.+|+++|+++|++++ .|..+.+ ...+|||||+|.+.++|..|+ .|+| ..|.|
T Consensus 174 ~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~-~~~kg~afVeF~~~e~A~~Al-~l~g--~~~~g 249 (509)
T TIGR01642 174 QARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI-NKEKNFAFLEFRTVEEATFAM-ALDS--IIYSN 249 (509)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE-CCCCCEEEEEeCCHHHHhhhh-cCCC--eEeeC
Confidence 468999999999999999999999752 1222222 246899999999999999999 4888 68999
Q ss_pred ccCC
Q psy1630 146 KESK 149 (149)
Q Consensus 146 ~~ik 149 (149)
++|+
T Consensus 250 ~~l~ 253 (509)
T TIGR01642 250 VFLK 253 (509)
T ss_pred ceeE
Confidence 8774
No 60
>KOG0105|consensus
Probab=99.10 E-value=3.1e-11 Score=89.07 Aligned_cols=68 Identities=18% Similarity=0.170 Sum_probs=59.3
Q ss_pred eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeee--eeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630 79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCE--FAHNNSWYITFENDEDAQKAYRYLREDVREFQNKES 148 (149)
Q Consensus 79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~--~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i 148 (149)
.++|||+|||.++-+.+|+++|.+||.|..|.+. ...-+||||||+++-+|+.||.--+| -.++|..|
T Consensus 6 ~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdG--Ydydg~rL 75 (241)
T KOG0105|consen 6 SRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDG--YDYDGCRL 75 (241)
T ss_pred cceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccc--cccCcceE
Confidence 4789999999999999999999999998888774 35679999999999999999988777 47777544
No 61
>KOG0108|consensus
Probab=99.10 E-value=6.6e-11 Score=98.10 Aligned_cols=68 Identities=22% Similarity=0.341 Sum_probs=63.2
Q ss_pred eEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 80 CIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 80 ~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
+++||+|+|+++++++|.++|++.|.|..+++.. .++||+|++|.++++|+.|++.||| .++.||+|+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg--~~~~gr~l~ 91 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNG--AEFNGRKLR 91 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCC--cccCCceEE
Confidence 7899999999999999999999999998888743 4899999999999999999999999 799999875
No 62
>KOG0124|consensus
Probab=99.08 E-value=1e-10 Score=94.04 Aligned_cols=69 Identities=20% Similarity=0.202 Sum_probs=64.4
Q ss_pred eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeee-----eeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCE-----FAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~-----~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.|.|||+.+.....+|.|+..|..||+|+.|+|. ..+||||||||+-+|.|+-|++.||| ..+.||.||
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg--~mlGGRNiK 186 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNG--QMLGGRNIK 186 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhcc--ccccCcccc
Confidence 5789999999999999999999999999999884 35899999999999999999999999 699999987
No 63
>smart00361 RRM_1 RNA recognition motif.
Probab=99.05 E-value=9.6e-11 Score=74.00 Aligned_cols=55 Identities=31% Similarity=0.303 Sum_probs=46.8
Q ss_pred HHHHHhhhC----CCCCCceee-e--e-----eeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 93 LEEIRGLFS----GKSCPRFIS-C--E-----FAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 93 ~~~l~~~F~----~~G~v~~v~-~--~-----~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
+++|+++|+ +||.+..+. + . ..++|+|||+|+++++|++|++.||| +.+.||+|+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g--~~~~gr~l~ 68 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNG--RYFDGRTVK 68 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCC--CEECCEEEE
Confidence 578888898 999988764 3 2 23689999999999999999999999 799999874
No 64
>KOG0127|consensus
Probab=99.04 E-value=1.7e-10 Score=96.41 Aligned_cols=68 Identities=16% Similarity=0.276 Sum_probs=63.1
Q ss_pred eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630 79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKES 148 (149)
Q Consensus 79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i 148 (149)
.+.|+|+|||+.+..++|+.+|+.||.|..|.+++ ..+|||||.|...-+|.+|++.+|+ ..+.||||
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~--~~i~gR~V 188 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNG--NKIDGRPV 188 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccC--ceecCcee
Confidence 67899999999999999999999999998888865 3579999999999999999999999 69999997
No 65
>KOG0117|consensus
Probab=99.03 E-value=2.8e-10 Score=93.13 Aligned_cols=69 Identities=23% Similarity=0.283 Sum_probs=60.3
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhh-cCccC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREF-QNKES 148 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~-~g~~i 148 (149)
..|-|||+.||.++.+|+|..+|++.|.|-.+++-. +++|||||+|.+.++|++||+.||+ .+| .||.|
T Consensus 82 ~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn--~Eir~GK~i 156 (506)
T KOG0117|consen 82 RGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNN--YEIRPGKLL 156 (506)
T ss_pred CCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhC--ccccCCCEe
Confidence 367899999999999999999999999988887632 4899999999999999999999999 466 45554
No 66
>KOG0123|consensus
Probab=99.02 E-value=4.5e-10 Score=91.86 Aligned_cols=122 Identities=15% Similarity=0.159 Sum_probs=90.1
Q ss_pred hhhhhhcCCCc-eeeeEEeechhhhhhh------chhhhHHHHHHhhCCCcccccccccccCC-CceeEEEeecCCCCCc
Q psy1630 21 AYLLSQMDNDQ-YVPIWTVANFNQVKKL------TKDIKLITEVLRESPNVQVDEEGIKVRPN-HKRCIVILREIPDSTP 92 (149)
Q Consensus 21 ~~l~~~~~~~g-~vpi~~~~~F~kvk~l------~~d~~~i~~al~~S~~lev~~d~~~vrr~-~~~~tl~v~~lp~~~t 92 (149)
.-|....++-| .|++.+-... . +| -.++.+..+|+..-+.=.++....+|-.. .+...+||.|||++++
T Consensus 13 ~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~~~~~i~nl~~~~~ 89 (369)
T KOG0123|consen 13 AMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDPSLVFIKNLDESID 89 (369)
T ss_pred HHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCCceeeecCCCcccC
Confidence 33445555444 4566666555 3 44 24788999999987766665444333211 1234499999999999
Q ss_pred HHHHHhhhCCCCCCceeeeee---eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630 93 LEEIRGLFSGKSCPRFISCEF---AHNNSWYITFENDEDAQKAYRYLREDVREFQNKES 148 (149)
Q Consensus 93 ~~~l~~~F~~~G~v~~v~~~~---~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i 148 (149)
...|.++|+.||+|..+.+.. +++|+ ||+|+++++|++|++.+|| .-+.|++|
T Consensus 90 ~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng--~ll~~kki 145 (369)
T KOG0123|consen 90 NKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNG--MLLNGKKI 145 (369)
T ss_pred cHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcC--cccCCCee
Confidence 999999999999887776643 58999 9999999999999999999 68888765
No 67
>KOG0145|consensus
Probab=99.01 E-value=1.5e-10 Score=89.50 Aligned_cols=119 Identities=18% Similarity=0.230 Sum_probs=92.7
Q ss_pred hhhhhhcCCC----ceeeeEEeechhhhhhh------------chhhhHHHHHHhhCCCcccccccccc---cCCC---c
Q psy1630 21 AYLLSQMDND----QYVPIWTVANFNQVKKL------------TKDIKLITEVLRESPNVQVDEEGIKV---RPNH---K 78 (149)
Q Consensus 21 ~~l~~~~~~~----g~vpi~~~~~F~kvk~l------------~~d~~~i~~al~~S~~lev~~d~~~v---rr~~---~ 78 (149)
.||-+.|..| -|-+|.-+.+++-++.- -.++++.++|+..-..|.++..-.+| ||.. +
T Consensus 47 NYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARPSs~~Ik 126 (360)
T KOG0145|consen 47 NYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARPSSDSIK 126 (360)
T ss_pred eecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccCChhhhc
Confidence 5677777632 34567777788766542 13678999999999999998777776 4432 4
Q ss_pred eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeee-----eeecCeeEEEEeccHHHHHHHHHHHHH
Q psy1630 79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCE-----FAHNNSWYITFENDEDAQKAYRYLRED 139 (149)
Q Consensus 79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~-----~~~kg~afVeF~~~e~A~~Ai~~l~~~ 139 (149)
...+||.+||...|..+|+.+|++||.|..-++- .-++|.+||.|+..++|+.||+.|||.
T Consensus 127 ~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~ 192 (360)
T KOG0145|consen 127 DANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQ 192 (360)
T ss_pred ccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCC
Confidence 5689999999999999999999999975543331 238999999999999999999999984
No 68
>KOG0117|consensus
Probab=99.00 E-value=2.1e-10 Score=93.82 Aligned_cols=64 Identities=20% Similarity=0.286 Sum_probs=58.4
Q ss_pred eEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630 80 CIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKES 148 (149)
Q Consensus 80 ~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i 148 (149)
..|||+||+.++|+|.|+++|++||.|..|.. .+.||||-|.+.++|-+|++.+|+ ++++|.+|
T Consensus 260 KvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk---~rDYaFVHf~eR~davkAm~~~ng--keldG~~i 323 (506)
T KOG0117|consen 260 KVLYVRNLMESTTEETLKKLFNEFGKVERVKK---PRDYAFVHFAEREDAVKAMKETNG--KELDGSPI 323 (506)
T ss_pred eeeeeeccchhhhHHHHHHHHHhccceEEeec---ccceeEEeecchHHHHHHHHHhcC--ceecCceE
Confidence 46999999999999999999999999887754 466999999999999999999999 79999876
No 69
>KOG0126|consensus
Probab=98.99 E-value=2.2e-11 Score=89.46 Aligned_cols=70 Identities=11% Similarity=0.092 Sum_probs=63.2
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
+..=|||+|||.+.|+.+|-..||+||+|..|.+-+ .++||||.-|+++-+..-|+..||| -.+.||.|+
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NG--iki~gRtir 108 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNG--IKILGRTIR 108 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCC--ceecceeEE
Confidence 345699999999999999999999999999888754 4899999999999999999999999 589999875
No 70
>KOG2590|consensus
Probab=98.97 E-value=1.3e-10 Score=96.28 Aligned_cols=64 Identities=28% Similarity=0.450 Sum_probs=57.8
Q ss_pred CcccccccceeeccccccchhhhhhhcCCCceeeeEEeechhhhhhhchhhhHHHHHHhhCCCcccccc
Q psy1630 1 MYLTTYDLACVCCRENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEE 69 (149)
Q Consensus 1 ~~~i~~q~e~yfs~~Nl~~d~~l~~~~~~~g~vpi~~~~~F~kvk~l~~d~~~i~~al~~S~~lev~~d 69 (149)
|..+.+|||||||.+||++|.|++++ |+||++|.+|+||..++.|+++|.+||+.+..+++..+
T Consensus 301 ~~~~~~~ie~~FSeE~~~~d~~n~~k-----~~~l~~ia~F~r~ad~s~d~nli~~alr~s~ive~~~d 364 (448)
T KOG2590|consen 301 IAFIQEPIEFYFSEENLQRDRFNREK-----FVPLRVIAKFKRVADLSSDINLILAALRNSLIVEETGD 364 (448)
T ss_pred ccccccccccccchHHHhhhhhhhcc-----cchhhhhhhhhhhhhcccCHHHHHHHHhhhhhhhccch
Confidence 34688999999999999999999875 57799999999999999999999999999998887654
No 71
>KOG0144|consensus
Probab=98.97 E-value=6.4e-10 Score=90.81 Aligned_cols=65 Identities=14% Similarity=0.266 Sum_probs=58.3
Q ss_pred eEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcC
Q psy1630 80 CIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQN 145 (149)
Q Consensus 80 ~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g 145 (149)
-.+||+.+|..++|.+|+++|++||.|-.|.+.+ .++|||||.|.+.++|.+|+.+|++. ++|-|
T Consensus 35 vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~-ktlpG 104 (510)
T KOG0144|consen 35 VKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQ-KTLPG 104 (510)
T ss_pred hhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcc-cccCC
Confidence 3499999999999999999999999998887744 38999999999999999999999985 77766
No 72
>KOG4212|consensus
Probab=98.95 E-value=9e-10 Score=90.25 Aligned_cols=70 Identities=19% Similarity=0.295 Sum_probs=63.1
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCC-CCCCceeeeee----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSG-KSCPRFISCEF----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~-~G~v~~v~~~~----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
..|++||.|+|+++.+++|+++|.+ .|+|.+|.+-. +++|||.|||+++|.+++|++.||. -++.||+|+
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk--~~~~GR~l~ 117 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNK--YEVNGRELV 117 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhh--ccccCceEE
Confidence 3578999999999999999999985 68999998743 5899999999999999999999999 699999974
No 73
>KOG0127|consensus
Probab=98.88 E-value=2.7e-09 Score=89.39 Aligned_cols=58 Identities=19% Similarity=0.224 Sum_probs=53.5
Q ss_pred eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHH
Q psy1630 79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYL 136 (149)
Q Consensus 79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l 136 (149)
..||||+|||+++|+++|.+.|++||++.++.+-. .++|+|||.|.++.+|++||...
T Consensus 292 ~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~A 354 (678)
T KOG0127|consen 292 GKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAA 354 (678)
T ss_pred cceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhc
Confidence 47999999999999999999999999999988743 38999999999999999999876
No 74
>KOG0145|consensus
Probab=98.87 E-value=2.1e-09 Score=83.13 Aligned_cols=70 Identities=21% Similarity=0.259 Sum_probs=62.9
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.+..+.|.-||...|+|+++.+|+.+|+|+...+-+ .+-||+||.|-+++||++|+..||| ..++.+.||
T Consensus 40 skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNG--LrLQ~KTIK 114 (360)
T KOG0145|consen 40 SKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNG--LRLQNKTIK 114 (360)
T ss_pred ccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcc--eeeccceEE
Confidence 456799999999999999999999999999887754 3679999999999999999999999 788888876
No 75
>KOG4660|consensus
Probab=98.87 E-value=2.6e-09 Score=89.37 Aligned_cols=70 Identities=20% Similarity=0.284 Sum_probs=66.2
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
..++|.|-|||..++.++|+.+|+.||+|+-|++.....|.+||+|-+.-+|+.|++.|++ .++.|+.||
T Consensus 74 ~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~--~~~~~~~~k 143 (549)
T KOG4660|consen 74 NQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNR--REIAGKRIK 143 (549)
T ss_pred ccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHH--HHhhhhhhc
Confidence 4689999999999999999999999999999998888899999999999999999999999 799999875
No 76
>KOG0148|consensus
Probab=98.86 E-value=2.3e-09 Score=83.16 Aligned_cols=67 Identities=15% Similarity=0.182 Sum_probs=59.7
Q ss_pred EEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 81 IVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 81 tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
-++|+.|...++-+.|++.|.+||+|...++-+ ++|||+||.|-+.++|++||..||| +=+.+|.|+
T Consensus 64 hvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnG--qWlG~R~IR 135 (321)
T KOG0148|consen 64 HVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNG--QWLGRRTIR 135 (321)
T ss_pred eEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCC--eeeccceee
Confidence 499999999999999999999999988777644 4899999999999999999999999 567777764
No 77
>KOG4206|consensus
Probab=98.79 E-value=6.7e-09 Score=78.52 Aligned_cols=68 Identities=21% Similarity=0.222 Sum_probs=61.2
Q ss_pred eEEEeecCCCCCcHHHHHh----hhCCCCCCceeeee--eeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 80 CIVILREIPDSTPLEEIRG----LFSGKSCPRFISCE--FAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 80 ~tl~v~~lp~~~t~~~l~~----~F~~~G~v~~v~~~--~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.||||.||+..+..++|+. +|++||.|..|.+- .+.+|-|||.|.+.+.|..|+..|+| --|-|++++
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~g--fpFygK~mr 83 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQG--FPFYGKPMR 83 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcC--CcccCchhh
Confidence 4999999999999999988 99999988887763 36899999999999999999999999 689998864
No 78
>KOG4212|consensus
Probab=98.77 E-value=5.5e-09 Score=85.73 Aligned_cols=68 Identities=19% Similarity=0.334 Sum_probs=61.6
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeee--eeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISC--EFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~--~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
+.|+|+|+|||.+.|+..|++-|.+||.|.+..| +-.++| .|.|.++++|+.|+..|++ ..++||.|+
T Consensus 535 Ka~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~GkskG--VVrF~s~edAEra~a~Mng--s~l~Gr~I~ 604 (608)
T KOG4212|consen 535 KACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENGKSKG--VVRFFSPEDAERACALMNG--SRLDGRNIK 604 (608)
T ss_pred cccEEEEecCCccccHHHHHHHHHhccceehhhhhccCCccc--eEEecCHHHHHHHHHHhcc--CcccCceee
Confidence 5689999999999999999999999999998877 334666 8999999999999999999 799999985
No 79
>KOG0147|consensus
Probab=98.76 E-value=4.9e-09 Score=87.68 Aligned_cols=66 Identities=23% Similarity=0.238 Sum_probs=61.8
Q ss_pred EEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 82 VILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 82 l~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
+||+||..+.+++.++.+|+.||.|..|.+.. .++||+||+|.+.++|.+|+..||| -++.||+||
T Consensus 281 l~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lng--felAGr~ik 351 (549)
T KOG0147|consen 281 LYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNG--FELAGRLIK 351 (549)
T ss_pred hhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhcc--ceecCceEE
Confidence 99999999999999999999999999988754 3799999999999999999999999 799999985
No 80
>KOG0153|consensus
Probab=98.67 E-value=1.6e-08 Score=80.79 Aligned_cols=68 Identities=18% Similarity=0.092 Sum_probs=58.7
Q ss_pred eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630 79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKES 148 (149)
Q Consensus 79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i 148 (149)
-.||||++|...+++.+|++.|-+||+++.+++.. .+++|||+|.+.++|+.|....-+. ..++|+.|
T Consensus 228 I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~-~~~CAFv~ftTR~aAE~Aae~~~n~-lvI~G~Rl 295 (377)
T KOG0153|consen 228 IKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILP-RKGCAFVTFTTREAAEKAAEKSFNK-LVINGFRL 295 (377)
T ss_pred eeEEEecccccchhHHHHHHHHhhcCCeeeEEeec-ccccceeeehhhHHHHHHHHhhcce-eeecceEE
Confidence 57999999988999999999999999999998854 5679999999999999998877553 56677655
No 81
>KOG0132|consensus
Probab=98.65 E-value=3.1e-08 Score=85.82 Aligned_cols=68 Identities=19% Similarity=0.218 Sum_probs=61.6
Q ss_pred eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.+||+|++||..+++.+|..+|+.||.|..|.+- .++|||||.+....+|++|+..|++ -.+.++.||
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li-~~R~cAfI~M~~RqdA~kalqkl~n--~kv~~k~Ik 488 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILI-PPRGCAFIKMVRRQDAEKALQKLSN--VKVADKTIK 488 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeec-cCCceeEEEEeehhHHHHHHHHHhc--ccccceeeE
Confidence 5899999999999999999999999999888763 4899999999999999999999997 588887774
No 82
>KOG0110|consensus
Probab=98.65 E-value=1.5e-08 Score=86.87 Aligned_cols=67 Identities=19% Similarity=0.249 Sum_probs=59.5
Q ss_pred eEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee--e------ecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630 80 CIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF--A------HNNSWYITFENDEDAQKAYRYLREDVREFQNKES 148 (149)
Q Consensus 80 ~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~--~------~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i 148 (149)
+++||+|+++++|.+++...|+..|.|..+.|.. + +.|||||||.++++|+.|++.|+| ..++|.+|
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqg--tvldGH~l 590 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQG--TVLDGHKL 590 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcC--ceecCceE
Confidence 3499999999999999999999999988877642 1 459999999999999999999998 69999876
No 83
>KOG0110|consensus
Probab=98.58 E-value=4e-08 Score=84.37 Aligned_cols=68 Identities=19% Similarity=0.303 Sum_probs=61.5
Q ss_pred eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630 79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKES 148 (149)
Q Consensus 79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i 148 (149)
-..|.|+|+|..++..+|+.+|+.||.++.|+++. .++|||||+|-++.+|.+|+.+|.+ .++-||.+
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~S--THlyGRrL 685 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGS--THLYGRRL 685 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcc--cceechhh
Confidence 35799999999999999999999999999999864 3699999999999999999999987 68888865
No 84
>KOG0146|consensus
Probab=98.55 E-value=6.7e-08 Score=75.18 Aligned_cols=67 Identities=12% Similarity=0.160 Sum_probs=59.1
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF----AHNNSWYITFENDEDAQKAYRYLREDVREFQN 145 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g 145 (149)
+.+.+||+-|...-++|+++.+|..||.+..+.+-+ .+||||||.|.+..||+.||..|+|. ++.-|
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgS-qTmpG 88 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGS-QTMPG 88 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhccc-ccCCC
Confidence 567899999999999999999999999998877744 38999999999999999999999985 55444
No 85
>KOG0109|consensus
Probab=98.53 E-value=7.7e-08 Score=75.46 Aligned_cols=67 Identities=22% Similarity=0.247 Sum_probs=59.6
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
...+++|+|+....+.+++++.|.+||+|....+ -++++||-|+-.++|..|++.||+ .+|+|++++
T Consensus 77 ~stkl~vgNis~tctn~ElRa~fe~ygpviecdi---vkdy~fvh~d~~eda~~air~l~~--~~~~gk~m~ 143 (346)
T KOG0109|consen 77 ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDI---VKDYAFVHFDRAEDAVEAIRGLDN--TEFQGKRMH 143 (346)
T ss_pred CccccccCCCCccccCHHHhhhhcccCCceeeee---ecceeEEEEeeccchHHHHhcccc--cccccceee
Confidence 3467999999999999999999999998665444 678999999999999999999999 699999864
No 86
>KOG0123|consensus
Probab=98.52 E-value=9.6e-08 Score=78.23 Aligned_cols=69 Identities=16% Similarity=0.209 Sum_probs=61.9
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKES 148 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i 148 (149)
...+|||.|++..++.+.|++.|+.+|++..+++.. .++||+||+|+++++|.+|+..+|+ ..+.|++|
T Consensus 269 ~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~~g~skG~gfV~fs~~eeA~~A~~~~n~--~~i~~k~l 341 (369)
T KOG0123|consen 269 QGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDENGKSKGFGFVEFSSPEEAKKAMTEMNG--RLIGGKPL 341 (369)
T ss_pred cccccccccCccccchhHHHHHHhcccceeeEEEEeccCCCccceEEEEcCCHHHHHHHHHhhCh--hhhcCCch
Confidence 346899999999999999999999999998877643 4899999999999999999999999 68888876
No 87
>KOG0124|consensus
Probab=98.50 E-value=2e-07 Score=75.29 Aligned_cols=95 Identities=12% Similarity=0.081 Sum_probs=75.5
Q ss_pred hHHHHHHhhCCCcccccccccccCCC-----------------ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-
Q psy1630 52 KLITEVLRESPNVQVDEEGIKVRPNH-----------------KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF- 113 (149)
Q Consensus 52 ~~i~~al~~S~~lev~~d~~~vrr~~-----------------~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~- 113 (149)
+...-||+..+...+..-+.+|.|.. .-..|||..+.++.++++|+..|+.||+|.+..+.+
T Consensus 166 EaAqLAlEqMNg~mlGGRNiKVgrPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~ 245 (544)
T KOG0124|consen 166 EAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARA 245 (544)
T ss_pred HHHHHHHHHhccccccCccccccCCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeecc
Confidence 34556677766666666667775431 246799999999999999999999999888776643
Q ss_pred ----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630 114 ----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKES 148 (149)
Q Consensus 114 ----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i 148 (149)
.++||+|+||++..+...|+..||- -++.|.-+
T Consensus 246 pt~~~HkGyGfiEy~n~qs~~eAiasMNl--FDLGGQyL 282 (544)
T KOG0124|consen 246 PTGRGHKGYGFIEYNNLQSQSEAIASMNL--FDLGGQYL 282 (544)
T ss_pred CCCCCccceeeEEeccccchHHHhhhcch--hhcccceE
Confidence 5899999999999999999999987 57777544
No 88
>KOG0533|consensus
Probab=98.49 E-value=1.4e-07 Score=72.91 Aligned_cols=69 Identities=13% Similarity=0.226 Sum_probs=61.5
Q ss_pred eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
..+|+|.|||..++.++|+++|.++|.++.+.+.. .+.|+|-|.|+..+||..|++.+++ -.++|++++
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~g--v~ldG~~mk 155 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNG--VALDGRPMK 155 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcC--cccCCceee
Confidence 35799999999999999999999999888777644 3789999999999999999999999 689998874
No 89
>KOG4208|consensus
Probab=98.47 E-value=2.4e-07 Score=69.44 Aligned_cols=68 Identities=16% Similarity=0.118 Sum_probs=56.9
Q ss_pred eeEEEeecCCCCCcHHHHHhhhCCC-CCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630 79 RCIVILREIPDSTPLEEIRGLFSGK-SCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKES 148 (149)
Q Consensus 79 ~~tl~v~~lp~~~t~~~l~~~F~~~-G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i 148 (149)
.--+|+..+|..+.+.++...|.++ |.+..+++-+ .++|||||||+++|.|+=|-+.||+. -|.|+-+
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNY--Ll~e~lL 122 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNY--LLMEHLL 122 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhh--hhhhhee
Confidence 4568899999999999999999998 6677777732 48999999999999999999999994 6666543
No 90
>KOG0415|consensus
Probab=98.45 E-value=1.8e-07 Score=75.24 Aligned_cols=70 Identities=16% Similarity=0.149 Sum_probs=59.5
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKES 148 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i 148 (149)
++.+.|||..|++-+|.++|.-+||.||.|....+-+ ++--+|||||++.+++++|+-.|++ --++++.|
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdN--vLIDDrRI 311 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDN--VLIDDRRI 311 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcc--eeeccceE
Confidence 4678999999999999999999999999877655533 3567899999999999999999988 46777665
No 91
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.44 E-value=3.8e-07 Score=62.13 Aligned_cols=58 Identities=28% Similarity=0.448 Sum_probs=39.7
Q ss_pred eEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHH
Q psy1630 80 CIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLRE 138 (149)
Q Consensus 80 ~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~ 138 (149)
+.|.+.|++.+++.++|++.|+++|.|.+|....+ ...|||-|.++++|++|++.+..
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G-~~~g~VRf~~~~~A~~a~~~~~~ 59 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG-DTEGYVRFKTPEAAQKALEKLKE 59 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT--SEEEEEESS---HHHHHHHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC-CCEEEEEECCcchHHHHHHHHHh
Confidence 56889999999999999999999999999987653 44799999999999999998876
No 92
>KOG0109|consensus
Probab=98.43 E-value=8.6e-08 Score=75.19 Aligned_cols=64 Identities=17% Similarity=0.240 Sum_probs=56.5
Q ss_pred EEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 81 IVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 81 tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.++|+|||..+++.+|+.+|++||.|....+ -|.++||-.|+...|+.||..|++ -+++|..|+
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDI---vKNYgFVHiEdktaaedairNLhg--YtLhg~nIn 67 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDI---VKNYGFVHIEDKTAAEDAIRNLHG--YTLHGVNIN 67 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeee---ecccceEEeecccccHHHHhhccc--ceecceEEE
Confidence 4899999999999999999999997654433 688999999999999999999999 599998774
No 93
>KOG4209|consensus
Probab=98.40 E-value=2.1e-07 Score=71.73 Aligned_cols=70 Identities=16% Similarity=0.120 Sum_probs=61.7
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.+.+.++|+++...+|.++++..|+.||.+..+.+.. .++|||||+|.+.+.+++|++ ||+ ..+.|+.|+
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~g--s~i~~~~i~ 173 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDG--SEIPGPAIE 173 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCC--cccccccce
Confidence 4677899999999999999999999999998766642 379999999999999999998 988 799998874
No 94
>KOG0116|consensus
Probab=98.33 E-value=8.3e-07 Score=73.57 Aligned_cols=66 Identities=14% Similarity=0.155 Sum_probs=53.5
Q ss_pred eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCcc
Q psy1630 79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKE 147 (149)
Q Consensus 79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ 147 (149)
..+|||+|||.+++.++|++.|+.||.|+...|.. ....||||+|++.++++.|+.+- ...++|+.
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As---p~~ig~~k 358 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS---PLEIGGRK 358 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC---ccccCCee
Confidence 45699999999999999999999999999877643 12389999999999999999754 13555544
No 95
>KOG0106|consensus
Probab=98.32 E-value=2.2e-07 Score=70.58 Aligned_cols=61 Identities=20% Similarity=0.280 Sum_probs=54.7
Q ss_pred EEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCc
Q psy1630 81 IVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNK 146 (149)
Q Consensus 81 tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~ 146 (149)
.+||++||+.+.+.+|+++|.+||.+..+.| ..||+||+|+++-+|..|+-.+++ ++|.|-
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~m---k~gf~fv~fed~rda~Dav~~l~~--~~l~~e 63 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADM---KNGFGFVEFEDPRDADDAVHDLDG--KELCGE 63 (216)
T ss_pred ceeecccCCccchhHHHHHHhhcccccccee---ecccceeccCchhhhhcccchhcC--ceecce
Confidence 4899999999999999999999998887766 568899999999999999999988 677664
No 96
>KOG4454|consensus
Probab=98.22 E-value=2.7e-07 Score=69.92 Aligned_cols=69 Identities=13% Similarity=0.151 Sum_probs=60.2
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
..+||+|.|+...++++-|.|+|-+.|+|..|.++. ..| ||||+|+++....-|++.+|| -.+.|++|+
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng--~~l~~~e~q 80 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENG--DDLEEDEEQ 80 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhccc--chhccchhh
Confidence 358999999999999999999999999988777754 245 999999999999999999999 477777763
No 97
>KOG4211|consensus
Probab=98.19 E-value=3.6e-06 Score=70.06 Aligned_cols=56 Identities=29% Similarity=0.337 Sum_probs=45.8
Q ss_pred EEEeecCCCCCcHHHHHhhhCCCCCCceeeeee---eecCeeEEEEeccHHHHHHHHHHH
Q psy1630 81 IVILREIPDSTPLEEIRGLFSGKSCPRFISCEF---AHNNSWYITFENDEDAQKAYRYLR 137 (149)
Q Consensus 81 tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~---~~kg~afVeF~~~e~A~~Ai~~l~ 137 (149)
-|-+++|||++|+++|.++|+.++. ..+.+.+ ++.|=|||||+++|++++|++.-+
T Consensus 12 ~vr~rGLPwsat~~ei~~Ff~~~~I-~~~~~~r~~Gr~sGeA~Ve~~seedv~~AlkkdR 70 (510)
T KOG4211|consen 12 EVRLRGLPWSATEKEILDFFSNCGI-ENLEIPRRNGRPSGEAYVEFTSEEDVEKALKKDR 70 (510)
T ss_pred EEEecCCCccccHHHHHHHHhcCce-eEEEEeccCCCcCcceEEEeechHHHHHHHHhhH
Confidence 4668999999999999999999973 3333332 478999999999999999997543
No 98
>KOG4205|consensus
Probab=98.14 E-value=1e-06 Score=70.58 Aligned_cols=68 Identities=12% Similarity=0.078 Sum_probs=55.7
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKES 148 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i 148 (149)
+.+.++|++|+|++++|.|++.|+++|++....+-+ .++||+||+|++++....++..-. .+++|+.|
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~---h~~dgr~v 77 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNART---HKLDGRSV 77 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccc---cccCCccc
Confidence 457899999999999999999999999877655422 478999999999998888774322 47888765
No 99
>KOG0131|consensus
Probab=98.14 E-value=2.2e-06 Score=63.30 Aligned_cols=97 Identities=9% Similarity=0.006 Sum_probs=69.5
Q ss_pred hhhHHHHHHhhCCCcccccccccccCCC-------ceeEEEeecCCCCCcHHHHHhhhCCCCCCce----eeee--eeec
Q psy1630 50 DIKLITEVLRESPNVQVDEEGIKVRPNH-------KRCIVILREIPDSTPLEEIRGLFSGKSCPRF----ISCE--FAHN 116 (149)
Q Consensus 50 d~~~i~~al~~S~~lev~~d~~~vrr~~-------~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~----v~~~--~~~k 116 (149)
+.++...|++--..+.+=....+|+... -...++|+||.+.+++..|.+.|+.+|.+.. .+.+ ..++
T Consensus 60 ~eedadYAikiln~VkLYgrpIrv~kas~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~ 139 (203)
T KOG0131|consen 60 TEEDADYAIKILNMVKLYGRPIRVNKASAHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPK 139 (203)
T ss_pred chhhhHHHHHHHHHHHhcCceeEEEecccccccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCC
Confidence 4556666666555554444434443221 1356999999999999999999999996332 2222 2478
Q ss_pred CeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630 117 NSWYITFENDEDAQKAYRYLREDVREFQNKES 148 (149)
Q Consensus 117 g~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i 148 (149)
||+||.|++.|.+.+|+..+|| +-+..++|
T Consensus 140 ~~g~i~~~sfeasd~ai~s~ng--q~l~nr~i 169 (203)
T KOG0131|consen 140 GFGFINYASFEASDAAIGSMNG--QYLCNRPI 169 (203)
T ss_pred CCeEEechhHHHHHHHHHHhcc--chhcCCce
Confidence 9999999999999999999999 56666665
No 100
>KOG0146|consensus
Probab=98.12 E-value=3.5e-06 Score=65.75 Aligned_cols=70 Identities=14% Similarity=0.151 Sum_probs=58.7
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeee--ee---eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISC--EF---AHNNSWYITFENDEDAQKAYRYLREDVREFQNKES 148 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~--~~---~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i 148 (149)
++.|.|||--||......+|..+|-.||.|....+ .+ .+|-|+||.|+++.+|+.||..|||- .+.=+.+
T Consensus 283 PeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGF--QIGMKRL 357 (371)
T KOG0146|consen 283 PEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGF--QIGMKRL 357 (371)
T ss_pred CCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcch--hhhhhhh
Confidence 46799999999999999999999999998765443 22 48999999999999999999999994 5544443
No 101
>KOG1457|consensus
Probab=98.04 E-value=9.8e-06 Score=61.78 Aligned_cols=64 Identities=17% Similarity=0.149 Sum_probs=50.6
Q ss_pred eeEEEeecCCCCCcHHHHHhhhCCCCCCce--eeeee----eecCeeEEEEeccHHHHHHHHHHHHHhhhhc
Q psy1630 79 RCIVILREIPDSTPLEEIRGLFSGKSCPRF--ISCEF----AHNNSWYITFENDEDAQKAYRYLREDVREFQ 144 (149)
Q Consensus 79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~--v~~~~----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~ 144 (149)
-||+||.|||.++..-+|..+|..|---+- +++.. ..+.+|||+|.+..+|+.|..+||| -.|+
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNG--vrFD 103 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNG--VRFD 103 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcC--eeec
Confidence 359999999999999999999998743222 22221 2457999999999999999999998 4554
No 102
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.04 E-value=1.2e-05 Score=53.95 Aligned_cols=64 Identities=16% Similarity=0.327 Sum_probs=49.7
Q ss_pred eeEEEeecCCCCCcHHHHHhhhCCC--CCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhc
Q psy1630 79 RCIVILREIPDSTPLEEIRGLFSGK--SCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQ 144 (149)
Q Consensus 79 ~~tl~v~~lp~~~t~~~l~~~F~~~--G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~ 144 (149)
++||.++|+|...|.+.|.+++.+. |..-.+-++. ...|||||.|.+++.|.+-.+.++| ..+.
T Consensus 1 RTTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g--~~w~ 71 (97)
T PF04059_consen 1 RTTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNG--KKWP 71 (97)
T ss_pred CeeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcC--Cccc
Confidence 4689999999999999999988764 3333333332 2679999999999999998888877 4553
No 103
>KOG4661|consensus
Probab=97.98 E-value=9.5e-06 Score=69.01 Aligned_cols=68 Identities=13% Similarity=0.123 Sum_probs=58.1
Q ss_pred eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeee---e--eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630 79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCE---F--AHNNSWYITFENDEDAQKAYRYLREDVREFQNKES 148 (149)
Q Consensus 79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~---~--~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i 148 (149)
.+.+.|.+|...+-..+|+.+|++||.|.-..+. + ..+-|+||++.+.++|.+||.+|+. .++.||-|
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHr--TELHGrmI 477 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHR--TELHGRMI 477 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhh--hhhcceee
Confidence 4789999999999999999999999987544332 1 3677999999999999999999998 69999866
No 104
>KOG1548|consensus
Probab=97.98 E-value=6.9e-06 Score=65.88 Aligned_cols=69 Identities=14% Similarity=0.160 Sum_probs=57.1
Q ss_pred eeEEEeecCCCCCcHHHHHhhhCCCCCCcee-e-----eee------eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCc
Q psy1630 79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFI-S-----CEF------AHNNSWYITFENDEDAQKAYRYLREDVREFQNK 146 (149)
Q Consensus 79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v-~-----~~~------~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~ 146 (149)
+..|||.|||.++|.+++.++|++||.|..- + +.+ ..||=|.+.|-..|+.+-|++.|++ ..|.|+
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe--~~~rg~ 211 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDE--DELRGK 211 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCc--ccccCc
Confidence 3459999999999999999999999964321 1 111 3789999999999999999999999 599998
Q ss_pred cCC
Q psy1630 147 ESK 149 (149)
Q Consensus 147 ~ik 149 (149)
.|+
T Consensus 212 ~~r 214 (382)
T KOG1548|consen 212 KLR 214 (382)
T ss_pred EEE
Confidence 763
No 105
>KOG4205|consensus
Probab=97.94 E-value=7e-06 Score=65.77 Aligned_cols=68 Identities=13% Similarity=0.277 Sum_probs=54.0
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKES 148 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i 148 (149)
.-..++|+++|.+++++++++.|.++|.|..+-+.. +.+||+||+|++++++.+++. ....+|.|+.+
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~---~~f~~~~gk~v 168 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL---QKFHDFNGKKV 168 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc---cceeeecCcee
Confidence 345799999999999999999999999776655432 489999999999999998863 22246666543
No 106
>KOG0106|consensus
Probab=97.88 E-value=6.8e-06 Score=62.52 Aligned_cols=67 Identities=15% Similarity=0.346 Sum_probs=58.7
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
..+.+.|.+++..+.+.+|.+.|.++|.+.+..+ ..+++||+|+++++|.+|+..+++ +++.|+.|.
T Consensus 98 s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~---~~~~~~v~Fs~~~da~ra~~~l~~--~~~~~~~l~ 164 (216)
T KOG0106|consen 98 THFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA---RRNFAFVEFSEQEDAKRALEKLDG--KKLNGRRIS 164 (216)
T ss_pred ccceeeeccchhhhhHHHHhhhhcccCCCchhhh---hccccceeehhhhhhhhcchhccc--hhhcCceee
Confidence 4677899999999999999999999998855443 568999999999999999999999 799998763
No 107
>KOG4211|consensus
Probab=97.85 E-value=9e-05 Score=61.92 Aligned_cols=90 Identities=24% Similarity=0.290 Sum_probs=63.0
Q ss_pred hhhhHHHHHHhhC------CCccccccc----c-cccCC---C--ceeEEEeecCCCCCcHHHHHhhhCCCCCCce-eee
Q psy1630 49 KDIKLITEVLRES------PNVQVDEEG----I-KVRPN---H--KRCIVILREIPDSTPLEEIRGLFSGKSCPRF-ISC 111 (149)
Q Consensus 49 ~d~~~i~~al~~S------~~lev~~d~----~-~vrr~---~--~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~-v~~ 111 (149)
.+.+++..||+.. .-|||=.-+ . ..++- . ..-.|-+++||+.+|+++|.++|+..-.|.. +-+
T Consensus 57 ~seedv~~AlkkdR~~mg~RYIEVf~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l 136 (510)
T KOG4211|consen 57 TSEEDVEKALKKDRESMGHRYIEVFTAGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILL 136 (510)
T ss_pred echHHHHHHHHhhHHHhCCceEEEEccCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceee
Confidence 3578889999864 346663321 1 12222 1 3557899999999999999999998654443 212
Q ss_pred ----eeeecCeeEEEEeccHHHHHHHHHHHH
Q psy1630 112 ----EFAHNNSWYITFENDEDAQKAYRYLRE 138 (149)
Q Consensus 112 ----~~~~kg~afVeF~~~e~A~~Ai~~l~~ 138 (149)
+.++.|=|||.|+++|.|++|+..-+.
T Consensus 137 ~~d~rgR~tGEAfVqF~sqe~ae~Al~rhre 167 (510)
T KOG4211|consen 137 PMDQRGRPTGEAFVQFESQESAEIALGRHRE 167 (510)
T ss_pred eccCCCCcccceEEEecCHHHHHHHHHHHHH
Confidence 124789999999999999999865443
No 108
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.85 E-value=4.9e-05 Score=49.56 Aligned_cols=63 Identities=16% Similarity=0.273 Sum_probs=41.8
Q ss_pred eEEEeecCCCCCcHHHH----HhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630 80 CIVILREIPDSTPLEEI----RGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKES 148 (149)
Q Consensus 80 ~tl~v~~lp~~~t~~~l----~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i 148 (149)
..|+|.|||.+.+...| +.++..||- +.+.+ +.|.|.|-|.+++.|++|.+.|+| .+.-|+.|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGG-kVl~v---~~~tAilrF~~~~~A~RA~KRmeg--EdVfG~kI 69 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGG-KVLSV---SGGTAILRFPNQEFAERAQKRMEG--EDVFGNKI 69 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT---EEE-----TT-EEEEESSHHHHHHHHHHHTT----SSSS--
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCC-EEEEE---eCCEEEEEeCCHHHHHHHHHhhcc--cccccceE
Confidence 46899999999887665 456668874 22333 579999999999999999999998 46667665
No 109
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.81 E-value=2.2e-05 Score=46.89 Aligned_cols=52 Identities=21% Similarity=0.253 Sum_probs=42.2
Q ss_pred eEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHH
Q psy1630 80 CIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAY 133 (149)
Q Consensus 80 ~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai 133 (149)
+.|-|.|+|.+. .+.+...|+.||+|..+..+ ....+.||.|+++.+|++|+
T Consensus 2 ~wI~V~Gf~~~~-~~~vl~~F~~fGeI~~~~~~-~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDL-AEEVLEHFASFGEIVDIYVP-ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchH-HHHHHHHHHhcCCEEEEEcC-CCCcEEEEEECCHHHHHhhC
Confidence 468899999764 46677799999988776664 25778999999999999985
No 110
>KOG1995|consensus
Probab=97.81 E-value=1.6e-05 Score=63.91 Aligned_cols=70 Identities=14% Similarity=0.163 Sum_probs=59.6
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCcee--------ee-----eeeecCeeEEEEeccHHHHHHHHHHHHHhhhhc
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFI--------SC-----EFAHNNSWYITFENDEDAQKAYRYLREDVREFQ 144 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v--------~~-----~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~ 144 (149)
...||||+++|..++++.+.++|.+||.++.- .+ ...+||-|.|.|+++-.|+.|+.++++ +.|.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~ag--kdf~ 142 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAG--KDFC 142 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcc--cccc
Confidence 45689999999999999999999999965421 11 124899999999999999999999999 7999
Q ss_pred CccCC
Q psy1630 145 NKESK 149 (149)
Q Consensus 145 g~~ik 149 (149)
|.+||
T Consensus 143 gn~ik 147 (351)
T KOG1995|consen 143 GNTIK 147 (351)
T ss_pred CCCch
Confidence 98875
No 111
>KOG0151|consensus
Probab=97.80 E-value=2.1e-05 Score=68.24 Aligned_cols=69 Identities=16% Similarity=0.100 Sum_probs=59.4
Q ss_pred eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeee--------eeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCE--------FAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~--------~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
...+||+|+++.++++.|-..|+.||++..+.+- +....|+||-|-+..||+.|++.|+| ..+.+.++|
T Consensus 174 TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg--~iv~~~e~K 250 (877)
T KOG0151|consen 174 TTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQG--IIVMEYEMK 250 (877)
T ss_pred ccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcc--eeeeeeeee
Confidence 3579999999999999999999999999888762 23678999999999999999999998 576666553
No 112
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.66 E-value=4.8e-05 Score=61.20 Aligned_cols=70 Identities=20% Similarity=0.255 Sum_probs=55.1
Q ss_pred ceeEEEeecCCCCCcHHH----H--HhhhCCCCCCceeeeeee------ecCe--eEEEEeccHHHHHHHHHHHHHhhhh
Q psy1630 78 KRCIVILREIPDSTPLEE----I--RGLFSGKSCPRFISCEFA------HNNS--WYITFENDEDAQKAYRYLREDVREF 143 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~----l--~~~F~~~G~v~~v~~~~~------~kg~--afVeF~~~e~A~~Ai~~l~~~~~~~ 143 (149)
..+-+||-++|+.+..|+ | .++|++||.|.-|-+.++ ..+. .||+|.+.|||..||...+| .-+
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDg--s~~ 190 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDG--SLL 190 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcc--ccc
Confidence 345799999998876666 2 379999998877666432 2333 49999999999999999999 689
Q ss_pred cCccCC
Q psy1630 144 QNKESK 149 (149)
Q Consensus 144 ~g~~ik 149 (149)
+||-||
T Consensus 191 DGr~lk 196 (480)
T COG5175 191 DGRVLK 196 (480)
T ss_pred cCceEe
Confidence 998775
No 113
>KOG1457|consensus
Probab=97.54 E-value=4.9e-05 Score=58.04 Aligned_cols=60 Identities=15% Similarity=0.189 Sum_probs=49.9
Q ss_pred eEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-eecCeeEEEEeccHHHHHHHHHHHHH
Q psy1630 80 CIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-AHNNSWYITFENDEDAQKAYRYLRED 139 (149)
Q Consensus 80 ~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-~~kg~afVeF~~~e~A~~Ai~~l~~~ 139 (149)
.|+||-||..++|+|+|+.+|+.|---..++++- .-...||++|++.+.|..|+..|.|+
T Consensus 211 stlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~ 271 (284)
T KOG1457|consen 211 STLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGN 271 (284)
T ss_pred hhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhcc
Confidence 3799999999999999999999997656666643 33456999999999999999888875
No 114
>KOG4307|consensus
Probab=97.42 E-value=0.00018 Score=62.52 Aligned_cols=67 Identities=19% Similarity=0.265 Sum_probs=55.8
Q ss_pred eEEEeecCCCCCcHHHHHhhhCCCCCCc-eeeeee----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630 80 CIVILREIPDSTPLEEIRGLFSGKSCPR-FISCEF----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKES 148 (149)
Q Consensus 80 ~tl~v~~lp~~~t~~~l~~~F~~~G~v~-~v~~~~----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i 148 (149)
+.|.+.|+|.+++.++|-++|..|-... .|.+++ ...|-|-|-|+++++|..|...+++ +.+..|.+
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~--~~i~nr~V 939 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDG--QKIRNRVV 939 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhcccc--CcccceeE
Confidence 4788999999999999999999997543 455554 3678899999999999999988888 67777665
No 115
>KOG1190|consensus
Probab=97.41 E-value=0.00026 Score=58.22 Aligned_cols=69 Identities=12% Similarity=0.211 Sum_probs=61.3
Q ss_pred eeEEEeecCCC-CCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 79 RCIVILREIPD-STPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 79 ~~tl~v~~lp~-~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.+.|.|.|+.+ .+|.|.|-.+|+-||.|..|.+-...+..|.|++.+...|+-|+.+|+| ..+.|++|+
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g--~~l~gk~lr 366 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEG--HKLYGKKLR 366 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhc--ceecCceEE
Confidence 46788888864 5899999999999999999988777789999999999999999999999 688888874
No 116
>KOG0226|consensus
Probab=97.25 E-value=0.00036 Score=54.16 Aligned_cols=69 Identities=10% Similarity=0.148 Sum_probs=55.7
Q ss_pred eeEEEeecCCCCCcHHHHHhhhCCCCC---Cceeeee--eeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 79 RCIVILREIPDSTPLEEIRGLFSGKSC---PRFISCE--FAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~---v~~v~~~--~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.-.|+.+.|..+++.+.+...|++|-. -+.++-. -.++||+||.|.+++++..|+++|+| +-.+.|+||
T Consensus 190 DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~g--kyVgsrpik 263 (290)
T KOG0226|consen 190 DFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNG--KYVGSRPIK 263 (290)
T ss_pred cceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcc--cccccchhH
Confidence 456999999999999999999998743 1222222 25899999999999999999999999 577778775
No 117
>KOG4206|consensus
Probab=97.25 E-value=0.00056 Score=52.04 Aligned_cols=61 Identities=21% Similarity=0.242 Sum_probs=53.4
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHH
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLRE 138 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~ 138 (149)
+..++++.|+|..++.+.+..+|.+|..-+.+++-...+|.|||+|.+...|..|...+.+
T Consensus 145 pn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~ 205 (221)
T KOG4206|consen 145 PNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQG 205 (221)
T ss_pred CceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCCCceeEEecchhhhhHHHhhhhcc
Confidence 4578999999999999999999999987777777666789999999999998888877765
No 118
>KOG0120|consensus
Probab=97.25 E-value=0.00022 Score=60.37 Aligned_cols=53 Identities=23% Similarity=0.354 Sum_probs=43.8
Q ss_pred HHHHhhhCCCCCCceeeeeee--------ecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630 94 EEIRGLFSGKSCPRFISCEFA--------HNNSWYITFENDEDAQKAYRYLREDVREFQNKES 148 (149)
Q Consensus 94 ~~l~~~F~~~G~v~~v~~~~~--------~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i 148 (149)
|+++.-+++||.|..|.+++. ..|..||||.+.++|++|.+.|.| ..|.||.+
T Consensus 424 Edvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~G--rKF~nRtV 484 (500)
T KOG0120|consen 424 EDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTG--RKFANRTV 484 (500)
T ss_pred HHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccC--ceeCCcEE
Confidence 334455578999998888653 468899999999999999999999 79999875
No 119
>KOG1190|consensus
Probab=97.24 E-value=0.0001 Score=60.47 Aligned_cols=70 Identities=16% Similarity=0.106 Sum_probs=54.4
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKES 148 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i 148 (149)
+.+.++++++|++++++++-+++.+||.|..+.+-. -+.-||+||.+++.|-.-+.........+.|++|
T Consensus 27 pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lk-GknQAflem~d~~sAvtmv~~y~~~~p~lr~~~~ 96 (492)
T KOG1190|consen 27 PSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLK-GKNQAFLEMADEESAVTMVNYYTSVTPVLRGQPI 96 (492)
T ss_pred CcceeEeccCCccccHHHHHHhcccccceeeeeeec-cchhhhhhhcchhhhhheeecccccCccccCcce
Confidence 567899999999999999999999999888776644 3458999999999988744444443344555544
No 120
>KOG1548|consensus
Probab=97.05 E-value=0.00054 Score=55.23 Aligned_cols=68 Identities=18% Similarity=0.285 Sum_probs=55.8
Q ss_pred eeEEEeecC--CC--CCc-------HHHHHhhhCCCCCCceeee-eeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCc
Q psy1630 79 RCIVILREI--PD--STP-------LEEIRGLFSGKSCPRFISC-EFAHNNSWYITFENDEDAQKAYRYLREDVREFQNK 146 (149)
Q Consensus 79 ~~tl~v~~l--p~--~~t-------~~~l~~~F~~~G~v~~v~~-~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~ 146 (149)
.+||.++|+ |. ..+ .++|++-.++||.|..|.+ .+.+.|-+-|.|.+.++|..||+.|+| +=|+||
T Consensus 265 ~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~G--R~fdgR 342 (382)
T KOG1548|consen 265 DRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDG--RWFDGR 342 (382)
T ss_pred CcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcC--eeecce
Confidence 579999998 22 122 4566777889999998876 456899999999999999999999999 799998
Q ss_pred cC
Q psy1630 147 ES 148 (149)
Q Consensus 147 ~i 148 (149)
.|
T Consensus 343 ql 344 (382)
T KOG1548|consen 343 QL 344 (382)
T ss_pred EE
Confidence 76
No 121
>KOG0129|consensus
Probab=97.04 E-value=0.0011 Score=55.75 Aligned_cols=58 Identities=17% Similarity=0.182 Sum_probs=52.6
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhC-CCCCCceeeeeee-----ecCeeEEEEeccHHHHHHHHH
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFS-GKSCPRFISCEFA-----HNNSWYITFENDEDAQKAYRY 135 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~-~~G~v~~v~~~~~-----~kg~afVeF~~~e~A~~Ai~~ 135 (149)
+++||||+++|..++.++|..+|+ -||.|.++-|..+ ++|.+=|+|.+..+-.+||.+
T Consensus 369 prrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 369 PRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred ccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 689999999999999999999999 6999999888543 799999999999999999864
No 122
>KOG0120|consensus
Probab=97.03 E-value=0.00043 Score=58.60 Aligned_cols=68 Identities=7% Similarity=0.054 Sum_probs=58.0
Q ss_pred eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630 79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKES 148 (149)
Q Consensus 79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i 148 (149)
.+.++|++||...++++++|+.+.+|..+..++-. -++||||.||-++.....|++.||| ..+.|+.+
T Consensus 289 ~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnG--m~lgd~~l 361 (500)
T KOG0120|consen 289 PNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNG--MQLGDKKL 361 (500)
T ss_pred cchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccch--hhhcCcee
Confidence 46799999999999999999999999877554421 3799999999999999999999999 67776654
No 123
>KOG2314|consensus
Probab=96.88 E-value=0.0012 Score=56.31 Aligned_cols=61 Identities=18% Similarity=0.281 Sum_probs=47.4
Q ss_pred eeEEEeecCCCC--CcHHH----HHhhhCCCCCCceeeeee----eecCeeEEEEeccHHHHHHHHHHHHH
Q psy1630 79 RCIVILREIPDS--TPLEE----IRGLFSGKSCPRFISCEF----AHNNSWYITFENDEDAQKAYRYLRED 139 (149)
Q Consensus 79 ~~tl~v~~lp~~--~t~~~----l~~~F~~~G~v~~v~~~~----~~kg~afVeF~~~e~A~~Ai~~l~~~ 139 (149)
...|+|.|+|-- .-.+. |..+|+++|++...-++. +.+|+.|+||++..+|+.|++.+||.
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~ 128 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGK 128 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccc
Confidence 456889999853 22333 567899999766555542 58999999999999999999999983
No 124
>KOG0147|consensus
Probab=96.84 E-value=0.0015 Score=55.44 Aligned_cols=55 Identities=16% Similarity=0.114 Sum_probs=46.9
Q ss_pred HHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 93 LEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 93 ~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.|+|.+-.+++|.|..|.+...+-|+.||-|++.++|..|+.+|+| .=|.||-|+
T Consensus 467 ~edV~Eec~k~g~v~hi~vd~ns~g~VYvrc~s~~~A~~a~~alhg--rWF~gr~It 521 (549)
T KOG0147|consen 467 REDVIEECGKHGKVCHIFVDKNSAGCVYVRCPSAEAAGTAVKALHG--RWFAGRMIT 521 (549)
T ss_pred HHHHHHHHHhcCCeeEEEEccCCCceEEEecCcHHHHHHHHHHHhh--hhhccceeE
Confidence 4556666699998888888766679999999999999999999999 689998774
No 125
>KOG4210|consensus
Probab=96.79 E-value=0.00053 Score=54.52 Aligned_cols=67 Identities=10% Similarity=0.128 Sum_probs=55.8
Q ss_pred eeEEE-eecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630 79 RCIVI-LREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKES 148 (149)
Q Consensus 79 ~~tl~-v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i 148 (149)
..+++ |.+++.+++.++|+..|..+|.+..++++. ..+|+|||+|.+..++..|+.. .. ..+.|+++
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~--~~~~~~~~ 256 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QT--RSIGGRPL 256 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-cc--CcccCccc
Confidence 34566 999999999999999999999999888853 4799999999999999998865 34 56666654
No 126
>KOG2202|consensus
Probab=96.76 E-value=0.00038 Score=53.98 Aligned_cols=45 Identities=18% Similarity=0.182 Sum_probs=38.7
Q ss_pred CCCCCceeeeee----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630 102 GKSCPRFISCEF----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKES 148 (149)
Q Consensus 102 ~~G~v~~v~~~~----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i 148 (149)
+||+++.+.+.. -..|-+||.|..+|+|++|++.||+ .=|.|+||
T Consensus 92 kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnn--Rw~~G~pi 140 (260)
T KOG2202|consen 92 KYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNN--RWYNGRPI 140 (260)
T ss_pred HhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcC--ccccCCcc
Confidence 799988775422 3679999999999999999999999 79999987
No 127
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.76 E-value=0.0053 Score=40.01 Aligned_cols=54 Identities=19% Similarity=0.207 Sum_probs=40.5
Q ss_pred EEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHH
Q psy1630 82 VILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLRE 138 (149)
Q Consensus 82 l~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~ 138 (149)
||--.+|...-..+|.++|+.||.|..-.+ ...+|||...+.+.|..|+..++.
T Consensus 11 VFhltFPkeWK~~DI~qlFspfG~I~VsWi---~dTSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 11 VFHLTFPKEWKTSDIYQLFSPFGQIYVSWI---NDTSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp EEEEE--TT--HHHHHHHCCCCCCEEEEEE---CTTEEEEEECCCHHHHHHHHHHTT
T ss_pred EEEEeCchHhhhhhHHHHhccCCcEEEEEE---cCCcEEEEeecHHHHHHHHHHhcc
Confidence 444459999999999999999997654444 568999999999999999887754
No 128
>KOG0105|consensus
Probab=96.70 E-value=0.0034 Score=46.92 Aligned_cols=58 Identities=16% Similarity=0.228 Sum_probs=51.5
Q ss_pred eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHH
Q psy1630 79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLRE 138 (149)
Q Consensus 79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~ 138 (149)
.-.|.|.+||.+.++++|++...+.|.|.+..+.++ |.+.|+|-..|+++-|+..|+.
T Consensus 115 e~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD--g~GvV~~~r~eDMkYAvr~ld~ 172 (241)
T KOG0105|consen 115 EYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD--GVGVVEYLRKEDMKYAVRKLDD 172 (241)
T ss_pred ceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc--cceeeeeeehhhHHHHHHhhcc
Confidence 346999999999999999999999998887766543 6889999999999999999987
No 129
>KOG0128|consensus
Probab=96.63 E-value=0.00032 Score=61.98 Aligned_cols=59 Identities=14% Similarity=0.180 Sum_probs=52.8
Q ss_pred eEEEeecCCCCCcHHHHHhhhCCCCCCceeeee-----eeecCeeEEEEeccHHHHHHHHHHHH
Q psy1630 80 CIVILREIPDSTPLEEIRGLFSGKSCPRFISCE-----FAHNNSWYITFENDEDAQKAYRYLRE 138 (149)
Q Consensus 80 ~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~-----~~~kg~afVeF~~~e~A~~Ai~~l~~ 138 (149)
++++|+|++....++++...|+.+|.+..+++. .+++|.||++|..+++|.+||...++
T Consensus 668 ~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~ 731 (881)
T KOG0128|consen 668 IKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDS 731 (881)
T ss_pred HHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhh
Confidence 578999999999999999999999998887764 35899999999999999999987776
No 130
>KOG1365|consensus
Probab=96.57 E-value=0.0068 Score=49.81 Aligned_cols=59 Identities=22% Similarity=0.285 Sum_probs=44.6
Q ss_pred eeEEEeecCCCCCcHHHHHhhhCCCC-----CCceeeeee---eecCeeEEEEeccHHHHHHHHHHH
Q psy1630 79 RCIVILREIPDSTPLEEIRGLFSGKS-----CPRFISCEF---AHNNSWYITFENDEDAQKAYRYLR 137 (149)
Q Consensus 79 ~~tl~v~~lp~~~t~~~l~~~F~~~G-----~v~~v~~~~---~~kg~afVeF~~~e~A~~Ai~~l~ 137 (149)
.-.|..+|||.+.+..++.++|..-. ....+-+.+ +..|-|||.|+.+++|+.|+..-+
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~khr 227 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRKHR 227 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHHHH
Confidence 44677889999999999999998532 222222222 478999999999999999986443
No 131
>KOG0129|consensus
Probab=96.52 E-value=0.0042 Score=52.42 Aligned_cols=57 Identities=12% Similarity=0.105 Sum_probs=44.4
Q ss_pred eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeee-------eeecC---eeEEEEeccHHHHHHHHH
Q psy1630 79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCE-------FAHNN---SWYITFENDEDAQKAYRY 135 (149)
Q Consensus 79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~-------~~~kg---~afVeF~~~e~A~~Ai~~ 135 (149)
.+.|+|++||++++++.|...|..||.+..-.-. ..++| |+|+-|+++-..+.-+.+
T Consensus 259 S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~a 325 (520)
T KOG0129|consen 259 SRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSA 325 (520)
T ss_pred ccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHH
Confidence 4679999999999999999999999975432221 13677 999999998777665543
No 132
>KOG3152|consensus
Probab=96.43 E-value=0.0012 Score=51.32 Aligned_cols=66 Identities=15% Similarity=0.160 Sum_probs=53.5
Q ss_pred eEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-------------ee--cC--eeEEEEeccHHHHHHHHHHHHHhhh
Q psy1630 80 CIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-------------AH--NN--SWYITFENDEDAQKAYRYLREDVRE 142 (149)
Q Consensus 80 ~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-------------~~--kg--~afVeF~~~e~A~~Ai~~l~~~~~~ 142 (149)
-.||++++|+......|+++|+.||.|-.|-+.. +. +- =++|||.+.-.|......||+ ..
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn--~~ 152 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNN--TP 152 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCC--Cc
Confidence 4699999999999999999999999887665521 01 11 178999999999999999998 57
Q ss_pred hcCcc
Q psy1630 143 FQNKE 147 (149)
Q Consensus 143 ~~g~~ 147 (149)
+.|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 77764
No 133
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.43 E-value=0.0033 Score=42.44 Aligned_cols=64 Identities=20% Similarity=0.102 Sum_probs=42.2
Q ss_pred eeEEEeecCCCCCcHHHHHhhhCCCCCCceee-e-----------eeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCc
Q psy1630 79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFIS-C-----------EFAHNNSWYITFENDEDAQKAYRYLREDVREFQNK 146 (149)
Q Consensus 79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~-~-----------~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~ 146 (149)
.+.|.|=|+|+. ....|-+.|++||.|.... + .....+...|+|+++.+|++|+. -|| ..+.|.
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG--~i~~g~ 81 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNG--TIFSGS 81 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTT--EEETTC
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCC--eEEcCc
Confidence 456888899998 6678888999999765442 1 11245667899999999999984 233 566653
No 134
>KOG1365|consensus
Probab=96.39 E-value=0.0028 Score=52.02 Aligned_cols=61 Identities=21% Similarity=0.310 Sum_probs=50.0
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCC-Cce--eeeee----eecCeeEEEEeccHHHHHHHHHHHH
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSC-PRF--ISCEF----AHNNSWYITFENDEDAQKAYRYLRE 138 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~-v~~--v~~~~----~~kg~afVeF~~~e~A~~Ai~~l~~ 138 (149)
.+..|..+|||+.++.|+|-.+|+.|.. +++ |+|.. .+.|=|||+|.++|+|..|....++
T Consensus 279 ~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk 346 (508)
T KOG1365|consen 279 SKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHK 346 (508)
T ss_pred CCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHH
Confidence 3557899999999999999999999864 333 56532 4789999999999999999877666
No 135
>PF09421 FRQ: Frequency clock protein; InterPro: IPR018554 The frequency clock protein, is the central component of the frq-based circadian negative feedback loop, regulates various aspects of the circadian clock in Neurospora crassa []. This protein has been shown to interact with itself via a coiled-coil [].
Probab=96.22 E-value=0.0023 Score=57.73 Aligned_cols=47 Identities=21% Similarity=0.386 Sum_probs=44.1
Q ss_pred CCCceeeeEEeechhhhhhhchhhhHHHHHHhh-CCCccccccccccc
Q psy1630 28 DNDQYVPIWTVANFNQVKKLTKDIKLITEVLRE-SPNVQVDEEGIKVR 74 (149)
Q Consensus 28 ~~~g~vpi~~~~~F~kvk~l~~d~~~i~~al~~-S~~lev~~d~~~vr 74 (149)
+.+|||.|.+|++.-.+--+..+++.|..|+.. |..++|+.||.|||
T Consensus 474 DaeGWVYLNLL~NmAQLHiiNVTPdFVRsAV~E~StKfQLSpDGrKIR 521 (989)
T PF09421_consen 474 DAEGWVYLNLLCNMAQLHIINVTPDFVRSAVSEKSTKFQLSPDGRKIR 521 (989)
T ss_pred ccccceehHHHHHHHHHHhhccCHHHHHHHHHhcccceeeCCCCCeee
Confidence 478999999999999999999999999999986 88999999999998
No 136
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.10 E-value=0.016 Score=35.64 Aligned_cols=53 Identities=23% Similarity=0.310 Sum_probs=40.0
Q ss_pred eEEEeecCCCCCcHHHHHhhhCCC----CCCceeeeeeeecCeeEEEEeccHHHHHHHHHH
Q psy1630 80 CIVILREIPDSTPLEEIRGLFSGK----SCPRFISCEFAHNNSWYITFENDEDAQKAYRYL 136 (149)
Q Consensus 80 ~tl~v~~lp~~~t~~~l~~~F~~~----G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l 136 (149)
..|+++|+.. .+.++|+.+|..| ++ ..|.. -.-.+|=|-|.+++.|.+|+.+|
T Consensus 6 eavhirGvd~-lsT~dI~~y~~~y~~~~~~-~~IEW--IdDtScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVDE-LSTDDIKAYFSEYFDEEGP-FRIEW--IDDTSCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCCC-CCHHHHHHHHHHhcccCCC-ceEEE--ecCCcEEEEECCHHHHHHHHHcC
Confidence 4699999855 7889999999998 43 22221 23457889999999999998754
No 137
>KOG2416|consensus
Probab=95.53 E-value=0.0099 Score=51.19 Aligned_cols=60 Identities=10% Similarity=0.171 Sum_probs=52.6
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhC-CCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHH
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFS-GKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLRE 138 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~-~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~ 138 (149)
..+.|||.||=...|..+|+++++ ..|.|...+|.. -|..|||.|.+.++|-....+|+|
T Consensus 443 ~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDk-IKShCyV~yss~eEA~atr~Alhn 503 (718)
T KOG2416|consen 443 PSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDK-IKSHCYVSYSSVEEAAATREALHN 503 (718)
T ss_pred ccceEeeecccccchHHHHHHHHhhccCchHHHHHHH-hhcceeEecccHHHHHHHHHHHhc
Confidence 457899999999999999999999 577777777754 678899999999999999999988
No 138
>KOG1456|consensus
Probab=95.11 E-value=0.044 Score=45.02 Aligned_cols=67 Identities=7% Similarity=0.106 Sum_probs=54.5
Q ss_pred eeEEEeecCCCC-CcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCcc
Q psy1630 79 RCIVILREIPDS-TPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKE 147 (149)
Q Consensus 79 ~~tl~v~~lp~~-~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ 147 (149)
.+.+.|-+|... .+-|.|-.+|-.||.|..|+.-+...|.|.||+.++.+.++|+.+||+. .+-|..
T Consensus 287 g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~gtamVemgd~~aver~v~hLnn~--~lfG~k 354 (494)
T KOG1456|consen 287 GCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPGTAMVEMGDAYAVERAVTHLNNI--PLFGGK 354 (494)
T ss_pred CcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccceeEEEcCcHHHHHHHHHHhccC--ccccce
Confidence 356778888754 6788999999999999888765556799999999999999999999985 444443
No 139
>KOG0128|consensus
Probab=95.05 E-value=0.013 Score=52.21 Aligned_cols=60 Identities=13% Similarity=0.102 Sum_probs=52.5
Q ss_pred eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeee----eeecCeeEEEEeccHHHHHHHHHHHH
Q psy1630 79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCE----FAHNNSWYITFENDEDAQKAYRYLRE 138 (149)
Q Consensus 79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~----~~~kg~afVeF~~~e~A~~Ai~~l~~ 138 (149)
...++|+|.|...|.+.++.++++.|.+..++.. ..++|-|+|.|.++.+|.+++...+.
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~ 799 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDV 799 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchh
Confidence 4579999999999999999999999998887653 25899999999999999999876655
No 140
>KOG2068|consensus
Probab=94.76 E-value=0.019 Score=46.27 Aligned_cols=68 Identities=21% Similarity=0.175 Sum_probs=51.0
Q ss_pred eEEEeecCCCCCcHHH-HH--hhhCCCCCCceeeeeee--------ecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630 80 CIVILREIPDSTPLEE-IR--GLFSGKSCPRFISCEFA--------HNNSWYITFENDEDAQKAYRYLREDVREFQNKES 148 (149)
Q Consensus 80 ~tl~v~~lp~~~t~~~-l~--~~F~~~G~v~~v~~~~~--------~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i 148 (149)
+-+||.++|.....+. |+ +.|++||.+..|.+..+ ..-.+||+|+..|+|..||...+| ...+|+.+
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g--~~~dg~~l 155 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDG--FVDDGRAL 155 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhh--HHhhhhhh
Confidence 4588889987754444 44 58999998887766432 223499999999999999999998 57788765
Q ss_pred C
Q psy1630 149 K 149 (149)
Q Consensus 149 k 149 (149)
|
T Consensus 156 k 156 (327)
T KOG2068|consen 156 K 156 (327)
T ss_pred H
Confidence 3
No 141
>KOG4849|consensus
Probab=94.63 E-value=0.028 Score=45.76 Aligned_cols=67 Identities=7% Similarity=0.173 Sum_probs=52.3
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-------eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCc
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-------AHNNSWYITFENDEDAQKAYRYLREDVREFQNK 146 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-------~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~ 146 (149)
.+-.+||+||-|.+|.++|.+....-|.-.+..|.+ .+||||.|-..+....++-++.|-. +++.|.
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~--k~iHGQ 152 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPT--KTIHGQ 152 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhccc--ceecCC
Confidence 345699999999999999998888777544444432 4899999999998888888877765 566664
No 142
>KOG2193|consensus
Probab=94.56 E-value=0.043 Score=45.79 Aligned_cols=65 Identities=17% Similarity=0.287 Sum_probs=52.6
Q ss_pred EEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630 81 IVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-AHNNSWYITFENDEDAQKAYRYLREDVREFQNKES 148 (149)
Q Consensus 81 tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i 148 (149)
.+|++||.+.++.++++.+|+....+- +-.+ ...|+|||...++.-|.+|++.++|. .++.|+++
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~--~g~fl~k~gyafvd~pdq~wa~kaie~~sgk-~elqGkr~ 68 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPG--SGQFLVKSGYAFVDCPDQQWANKAIETLSGK-VELQGKRQ 68 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCC--CcceeeecceeeccCCchhhhhhhHHhhchh-hhhcCcee
Confidence 589999999999999999998752111 1111 36799999999999999999999996 78888764
No 143
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.51 E-value=0.042 Score=40.70 Aligned_cols=60 Identities=20% Similarity=0.264 Sum_probs=39.0
Q ss_pred eeEEEeecCCCCCcHHHHHhhhCC-CCCC---ceeeeee-------eecCeeEEEEeccHHHHHHHHHHHH
Q psy1630 79 RCIVILREIPDSTPLEEIRGLFSG-KSCP---RFISCEF-------AHNNSWYITFENDEDAQKAYRYLRE 138 (149)
Q Consensus 79 ~~tl~v~~lp~~~t~~~l~~~F~~-~G~v---~~v~~~~-------~~kg~afVeF~~~e~A~~Ai~~l~~ 138 (149)
...|.|+.||+..|++++.+..+. ++.- .++.-.. ..-.-|||.|.+.+++..-.+.++|
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g 77 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDG 77 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTT
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCC
Confidence 457999999999999999997777 4432 2332111 1223499999999998887766666
No 144
>KOG1456|consensus
Probab=94.27 E-value=0.13 Score=42.37 Aligned_cols=61 Identities=23% Similarity=0.288 Sum_probs=49.8
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHH
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLRE 138 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~ 138 (149)
.+.++|+.-|.|..+|+|.+.++|...+.+ .++++. ....++.+||++.++|..|+..+|-
T Consensus 404 ~Ps~vLHffNaP~~vtEe~l~~i~nek~v~-~~svkvFp~kserSssGllEfe~~s~Aveal~~~NH 469 (494)
T KOG1456|consen 404 PPSNVLHFFNAPLGVTEEQLIGICNEKDVP-PTSVKVFPLKSERSSSGLLEFENKSDAVEALMKLNH 469 (494)
T ss_pred CCcceeEEecCCCccCHHHHHHHhhhcCCC-cceEEeecccccccccceeeeehHHHHHHHHHHhcc
Confidence 367889999999999999999999998865 444431 2345679999999999999988875
No 145
>KOG1996|consensus
Probab=94.01 E-value=0.042 Score=43.82 Aligned_cols=54 Identities=19% Similarity=0.064 Sum_probs=41.7
Q ss_pred HHHHHhhhCCCCCCceeeeee------eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630 93 LEEIRGLFSGKSCPRFISCEF------AHNNSWYITFENDEDAQKAYRYLREDVREFQNKES 148 (149)
Q Consensus 93 ~~~l~~~F~~~G~v~~v~~~~------~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i 148 (149)
++++++-.++||.|..+-+-- +-.--.||+|+..++|.+|+-.||| +=|.||.+
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnG--RyFGGr~v 359 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNG--RYFGGRVV 359 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCC--ceecceee
Confidence 667888889999877654411 1223379999999999999999999 68888865
No 146
>KOG0112|consensus
Probab=93.75 E-value=0.11 Score=46.95 Aligned_cols=60 Identities=18% Similarity=0.172 Sum_probs=53.8
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHH
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLRE 138 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~ 138 (149)
..+.+.+++++.+.....+...|..||.++.|..+. ...+|||.+++...|+.|+..+.|
T Consensus 454 ~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h-gq~yayi~yes~~~aq~a~~~~rg 513 (975)
T KOG0112|consen 454 PTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH-GQPYAYIQYESPPAAQAATHDMRG 513 (975)
T ss_pred cceeeccCCCCCCChHHHHHHHhhccCcceeeeccc-CCcceeeecccCccchhhHHHHhc
Confidence 345688999999999999999999999999887755 567999999999999999999988
No 147
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=93.66 E-value=0.054 Score=38.92 Aligned_cols=65 Identities=14% Similarity=0.201 Sum_probs=43.2
Q ss_pred ceeEEEeecCCC------CCc---HHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630 78 KRCIVILREIPD------STP---LEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKES 148 (149)
Q Consensus 78 ~~~tl~v~~lp~------~~t---~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i 148 (149)
+.-||.|.-..+ ..+ .++|-+.|++||.+.-++. ..+.-+|+|.+-+.|-+|+. ++| .++.|+.|
T Consensus 26 pDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRf---v~~~mwVTF~dg~sALaals-~dg--~~v~g~~l 99 (146)
T PF08952_consen 26 PDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRF---VGDTMWVTFRDGQSALAALS-LDG--IQVNGRTL 99 (146)
T ss_dssp TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEE---ETTCEEEEESSCHHHHHHHH-GCC--SEETTEEE
T ss_pred CCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEE---eCCeEEEEECccHHHHHHHc-cCC--cEECCEEE
Confidence 456777776651 122 3467788899998666544 44677899999988888874 555 68888765
No 148
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=93.07 E-value=0.28 Score=35.34 Aligned_cols=59 Identities=14% Similarity=0.106 Sum_probs=44.7
Q ss_pred ceeEEEeecCCCCC----cHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHH
Q psy1630 78 KRCIVILREIPDST----PLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLRE 138 (149)
Q Consensus 78 ~~~tl~v~~lp~~~----t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~ 138 (149)
+-.||.|+-++.+. +...|..-++.||+|..|.. -.+-+|.|.|++..+|=+|+.++..
T Consensus 85 PMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~--cGrqsavVvF~d~~SAC~Av~Af~s 147 (166)
T PF15023_consen 85 PMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTL--CGRQSAVVVFKDITSACKAVSAFQS 147 (166)
T ss_pred CceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeee--cCCceEEEEehhhHHHHHHHHhhcC
Confidence 45789999887764 33345556788999888765 2456899999999999999987754
No 149
>KOG0115|consensus
Probab=92.79 E-value=0.11 Score=40.52 Aligned_cols=59 Identities=14% Similarity=0.087 Sum_probs=49.4
Q ss_pred eEEEeecCCCCCcHHHHHhhhCCCCCCce----eeeeeeecCeeEEEEeccHHHHHHHHHHHH
Q psy1630 80 CIVILREIPDSTPLEEIRGLFSGKSCPRF----ISCEFAHNNSWYITFENDEDAQKAYRYLRE 138 (149)
Q Consensus 80 ~tl~v~~lp~~~t~~~l~~~F~~~G~v~~----v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~ 138 (149)
..|||.|++..++.|.+..-|+.||.+.. +..+....+=.+|+|...-.|.+|....+.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~ 94 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCRE 94 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhcc
Confidence 68999999999999999999999998653 333334667789999999999999987754
No 150
>KOG4676|consensus
Probab=92.70 E-value=0.08 Score=43.74 Aligned_cols=64 Identities=14% Similarity=0.246 Sum_probs=49.0
Q ss_pred EEEeecCCCCCcHHHHHhhhCCCCCCceeee-e--e-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCcc
Q psy1630 81 IVILREIPDSTPLEEIRGLFSGKSCPRFISC-E--F-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKE 147 (149)
Q Consensus 81 tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~-~--~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ 147 (149)
.|.|.||.+.+|.|+++.+|+..|.|..+.+ + . ...-.|||-|.+...+..| ++|.+ ..|=|+.
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~va-QhLtn--tvfvdra 80 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVA-QHLTN--TVFVDRA 80 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHH-hhhcc--ceeeeee
Confidence 6889999999999999999999998877655 1 1 1456799999998877554 56666 3555543
No 151
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=91.86 E-value=0.26 Score=30.64 Aligned_cols=45 Identities=13% Similarity=0.316 Sum_probs=35.5
Q ss_pred CCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHH
Q psy1630 90 STPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLRE 138 (149)
Q Consensus 90 ~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~ 138 (149)
.++.++++.-+.+|+-. ++..+..| -||.|.+..+|+++....++
T Consensus 11 ~~~v~d~K~~Lr~y~~~---~I~~d~tG-fYIvF~~~~Ea~rC~~~~~~ 55 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD---RIRDDRTG-FYIVFNDSKEAERCFRAEDG 55 (66)
T ss_pred CccHHHHHHHHhcCCcc---eEEecCCE-EEEEECChHHHHHHHHhcCC
Confidence 57899999999999843 33334445 48999999999999987777
No 152
>KOG4307|consensus
Probab=91.84 E-value=0.2 Score=44.31 Aligned_cols=55 Identities=29% Similarity=0.414 Sum_probs=42.7
Q ss_pred EEEeecCCCCCcHHHHHhhhCCCCCCc-eeeeeeeecCeeEEEEeccHHHHHHHHH
Q psy1630 81 IVILREIPDSTPLEEIRGLFSGKSCPR-FISCEFAHNNSWYITFENDEDAQKAYRY 135 (149)
Q Consensus 81 tl~v~~lp~~~t~~~l~~~F~~~G~v~-~v~~~~~~kg~afVeF~~~e~A~~Ai~~ 135 (149)
.|-..|||+.+..-+|+.+|+..--+. -|+|--+--|-|||-|.+-|||.-|+..
T Consensus 4 IIRLqnLP~tAga~DIR~FFSGL~IPdGgVHIIGGe~GeaFI~FsTDeDARlaM~k 59 (944)
T KOG4307|consen 4 IIRLQNLPMTAGASDIRTFFSGLKIPDGGVHIIGGEEGEAFIGFSTDEDARLAMTK 59 (944)
T ss_pred EEEecCCcccccchHHHHhhcccccCCCceEEecccccceEEEecccchhhhhhhh
Confidence 356789999999999999999753221 2445445678999999999999998743
No 153
>KOG4676|consensus
Probab=90.86 E-value=0.019 Score=47.33 Aligned_cols=58 Identities=16% Similarity=0.141 Sum_probs=49.3
Q ss_pred eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeee-ecCeeEEEEeccHHHHHHHHHH
Q psy1630 79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFA-HNNSWYITFENDEDAQKAYRYL 136 (149)
Q Consensus 79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~-~kg~afVeF~~~e~A~~Ai~~l 136 (149)
.+|++|.+|+..+...++-+.|..+|.|.+.++.-+ ...+|-|+|........|+...
T Consensus 151 rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr~~ 209 (479)
T KOG4676|consen 151 RRTREVQSLISAAILPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALRSH 209 (479)
T ss_pred HhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHHhc
Confidence 479999999999999999999999999999887543 4556679999999888887654
No 154
>KOG2135|consensus
Probab=90.22 E-value=0.065 Score=45.13 Aligned_cols=68 Identities=16% Similarity=0.218 Sum_probs=52.6
Q ss_pred ceeEEEeecCCCC-CcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 78 KRCIVILREIPDS-TPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 78 ~~~tl~v~~lp~~-~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
+.+++-+.-.|.. -|.++|...|.+||.|..+.+.. +.-.|.|+|.+..+|-.|.. ..+ ..|+||.||
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~-~~~~a~vTF~t~aeag~a~~-s~~--avlnnr~iK 439 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDY-SSLHAVVTFKTRAEAGEAYA-SHG--AVLNNRFIK 439 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccC-chhhheeeeeccccccchhc-ccc--ceecCceeE
Confidence 3566666666655 47899999999999988877754 35679999999999988874 334 588998886
No 155
>KOG2278|consensus
Probab=87.84 E-value=0.2 Score=37.12 Aligned_cols=37 Identities=24% Similarity=0.461 Sum_probs=32.8
Q ss_pred hcCCCceeeeEEeechhhhhhhchhhhHHHHHHhhCC
Q psy1630 26 QMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESP 62 (149)
Q Consensus 26 ~~~~~g~vpi~~~~~F~kvk~l~~d~~~i~~al~~S~ 62 (149)
+|.+|||||+..+++.|+.+....+.++|.++.+.-.
T Consensus 28 ~m~~dGfvpv~~lL~lnq~r~~~~t~ddi~riVk~nd 64 (207)
T KOG2278|consen 28 NMRGDGFVPVEDLLNLNQFRGANHTIDDIRRIVKRND 64 (207)
T ss_pred cccCCCceEHHHHhccchhcccCCcHHHHHHHHhccc
Confidence 4569999999999999999999888999999998754
No 156
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=87.62 E-value=0.22 Score=37.22 Aligned_cols=50 Identities=24% Similarity=0.302 Sum_probs=32.7
Q ss_pred cCCCceeeeEEeechhhhhhhchhhhHHHHHHhhCCC--cccc---cccccccCC
Q psy1630 27 MDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPN--VQVD---EEGIKVRPN 76 (149)
Q Consensus 27 ~~~~g~vpi~~~~~F~kvk~l~~d~~~i~~al~~S~~--lev~---~d~~~vrr~ 76 (149)
|+++|||+++-++...+.+....+.+.|.+.+..++. .++. +++.+||-.
T Consensus 27 ~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~K~Rfel~~~~~~~~~IRA~ 81 (186)
T PF01885_consen 27 MDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDDKQRFELRYEDPGGWRIRAN 81 (186)
T ss_dssp --TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-SS--EEEE-----TTEEEES
T ss_pred cCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCCCCCeeEEcccccCceEEEC
Confidence 5689999999999999988777788999999988775 4555 556777743
No 157
>KOG4285|consensus
Probab=87.20 E-value=0.85 Score=36.64 Aligned_cols=60 Identities=18% Similarity=0.143 Sum_probs=42.4
Q ss_pred EEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCc
Q psy1630 82 VILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNK 146 (149)
Q Consensus 82 l~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~ 146 (149)
|-|-|+|.. ...-|-..|++||.|...... ....+-+|.|.+.-+|++|+ +.+++.|+|.
T Consensus 200 VTVfGFppg-~~s~vL~~F~~cG~Vvkhv~~-~ngNwMhirYssr~~A~KAL---skng~ii~g~ 259 (350)
T KOG4285|consen 200 VTVFGFPPG-QVSIVLNLFSRCGEVVKHVTP-SNGNWMHIRYSSRTHAQKAL---SKNGTIIDGD 259 (350)
T ss_pred EEEeccCcc-chhHHHHHHHhhCeeeeeecC-CCCceEEEEecchhHHHHhh---hhcCeeeccc
Confidence 555688765 345677899999987654443 34456789999999999997 4443666664
No 158
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=87.15 E-value=2.1 Score=29.31 Aligned_cols=61 Identities=18% Similarity=0.117 Sum_probs=39.6
Q ss_pred EEeecCCCCCcHHHHHhhhCCCC-CCceeeeeee---ecCeeEEEEeccHHHHHHHHHHHHHhhhhc
Q psy1630 82 VILREIPDSTPLEEIRGLFSGKS-CPRFISCEFA---HNNSWYITFENDEDAQKAYRYLREDVREFQ 144 (149)
Q Consensus 82 l~v~~lp~~~t~~~l~~~F~~~G-~v~~v~~~~~---~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~ 144 (149)
+.+-..|..++.+.|..+.+.+- .+..+++.++ .+-.+.+.|.++++|..-+...|| +.|.
T Consensus 16 ~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNG--k~Fn 80 (110)
T PF07576_consen 16 CCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNG--KPFN 80 (110)
T ss_pred EEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCC--CccC
Confidence 33344455566667765555543 3445666554 334689999999999998887777 5654
No 159
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=85.41 E-value=1.6 Score=27.39 Aligned_cols=57 Identities=14% Similarity=0.141 Sum_probs=31.9
Q ss_pred CCcHHHHHhhhCCCCCCceeeeee--eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 90 STPLEEIRGLFSGKSCPRFISCEF--AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 90 ~~t~~~l~~~F~~~G~v~~v~~~~--~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.++..+|-.++...+.+..-.+.. -...|+||+-.. +.|+++++.|++ ..+.|++++
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~~~S~vev~~-~~a~~v~~~l~~--~~~~gk~v~ 70 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFDNFSFVEVPE-EVAEKVLEALNG--KKIKGKKVR 70 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-SS-EEEEE-T-T-HHHHHHHHTT----SSS----
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEeeeEEEEEECH-HHHHHHHHHhcC--CCCCCeeEE
Confidence 456778888777765444333321 267899999887 578899999998 699999874
No 160
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=84.09 E-value=0.66 Score=34.63 Aligned_cols=56 Identities=30% Similarity=0.320 Sum_probs=37.2
Q ss_pred cHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630 92 PLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKES 148 (149)
Q Consensus 92 t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i 148 (149)
..+.|+++|..++.+..... ..+-+=..|.|.+.++|..|...++..+..|.|..+
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~-L~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l 63 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSP-LKSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRL 63 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEE-ETTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-
T ss_pred hHHHHHHHHHhcCCceEEEE-cCCCCEEEEEeCCHHHHHHHHHHhcccccccCCCce
Confidence 46889999999996554432 234445789999999999999988722257777654
No 161
>KOG0112|consensus
Probab=83.41 E-value=0.19 Score=45.40 Aligned_cols=60 Identities=12% Similarity=0.069 Sum_probs=52.4
Q ss_pred eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeee----ecCeeEEEEeccHHHHHHHHHHHH
Q psy1630 79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFA----HNNSWYITFENDEDAQKAYRYLRE 138 (149)
Q Consensus 79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~----~kg~afVeF~~~e~A~~Ai~~l~~ 138 (149)
.+||+++|++..+++.+|+-.|..+|.+..|.+... -.-+|||.|.+...+..|...+.+
T Consensus 372 trTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~ 435 (975)
T KOG0112|consen 372 TRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESG 435 (975)
T ss_pred hhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcC
Confidence 579999999999999999999999999999988542 356799999999999998877765
No 162
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=82.56 E-value=0.65 Score=34.53 Aligned_cols=48 Identities=15% Similarity=0.227 Sum_probs=34.5
Q ss_pred cCCCceeeeEEeechhhhhhhchhhhHHHHHHhhCCC--cccccccccccCC
Q psy1630 27 MDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPN--VQVDEEGIKVRPN 76 (149)
Q Consensus 27 ~~~~g~vpi~~~~~F~kvk~l~~d~~~i~~al~~S~~--lev~~d~~~vrr~ 76 (149)
|+++|||+++.++...+.+....+.+.|.+...+++. .+++ +.+||-.
T Consensus 28 ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~d~K~Rf~l~--~~~IRA~ 77 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKAYKWVTRELLEAVVESDDKGRFEIS--GDRIRAR 77 (179)
T ss_pred cCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHcCCCcceEec--CceEEec
Confidence 5689999999999776644334577888888888775 3444 5677744
No 163
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=79.34 E-value=2.9 Score=28.79 Aligned_cols=50 Identities=16% Similarity=0.165 Sum_probs=27.7
Q ss_pred eEEEeecCCCC---------CcHHHHHhhhCCCCCCceeee--eeeecCeeEEEEeccHHH
Q psy1630 80 CIVILREIPDS---------TPLEEIRGLFSGKSCPRFISC--EFAHNNSWYITFENDEDA 129 (149)
Q Consensus 80 ~tl~v~~lp~~---------~t~~~l~~~F~~~G~v~~v~~--~~~~kg~afVeF~~~e~A 129 (149)
.+++|-|+|.. .+.+.|++.|+.|++.+...+ ..++.|++.|+|.+.-..
T Consensus 9 wmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~G 69 (116)
T PF03468_consen 9 WMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWSG 69 (116)
T ss_dssp -EEEEE----EE-TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHHH
T ss_pred CEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChHH
Confidence 46777787643 367789999999987664443 336889999999987543
No 164
>KOG4660|consensus
Probab=78.01 E-value=1.9 Score=37.16 Aligned_cols=24 Identities=13% Similarity=0.224 Sum_probs=22.5
Q ss_pred ecCeeEEEEeccHHHHHHHHHHHH
Q psy1630 115 HNNSWYITFENDEDAQKAYRYLRE 138 (149)
Q Consensus 115 ~kg~afVeF~~~e~A~~Ai~~l~~ 138 (149)
..|||||.|.+++++..++++.+|
T Consensus 430 NvGYAFINm~sp~ai~~F~kAFnG 453 (549)
T KOG4660|consen 430 NVGYAFINMTSPEAIIRFYKAFNG 453 (549)
T ss_pred ccceeEEeecCHHHHHHHHHHHcC
Confidence 569999999999999999999988
No 165
>KOG2253|consensus
Probab=76.29 E-value=1.6 Score=38.44 Aligned_cols=65 Identities=14% Similarity=0.078 Sum_probs=52.0
Q ss_pred CCceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCc
Q psy1630 76 NHKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNK 146 (149)
Q Consensus 76 ~~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~ 146 (149)
.++.-|++|+|+-..+..+-++.+...||.|... .+.. |+|.+|.....+..|+..++. ...+|.
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~--kr~~--fgf~~f~~~~~~~ra~r~~t~--~~~~~~ 101 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSW--KRDK--FGFCEFLKHIGDLRASRLLTE--LNIDDQ 101 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhh--hhhh--hcccchhhHHHHHHHHHHhcc--cCCCcc
Confidence 3467799999999999999999999999976543 2222 889999999999999988876 466554
No 166
>KOG4574|consensus
Probab=74.45 E-value=0.87 Score=41.19 Aligned_cols=55 Identities=16% Similarity=0.007 Sum_probs=44.4
Q ss_pred eecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHH
Q psy1630 84 LREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLRED 139 (149)
Q Consensus 84 v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~ 139 (149)
+.|.+-..+...|..++++||.|...++-+ .-..|.|+|.+.|.|..|.+++.|.
T Consensus 303 ~~nn~v~~tSssL~~l~s~yg~v~s~wtlr-~~N~alvs~~s~~sai~a~dAl~gk 357 (1007)
T KOG4574|consen 303 LENNAVNLTSSSLATLCSDYGSVASAWTLR-DLNMALVSFSSVESAILALDALQGK 357 (1007)
T ss_pred hhcccccchHHHHHHHHHhhcchhhheecc-cccchhhhhHHHHHHHHhhhhhcCC
Confidence 334445668888999999999998887744 3457999999999999999988883
No 167
>KOG0804|consensus
Probab=70.29 E-value=6.1 Score=33.51 Aligned_cols=64 Identities=13% Similarity=0.171 Sum_probs=49.3
Q ss_pred eeEEEeecCCCCCcHHHHHhhhCCCC-CCceeeeeee---ecCeeEEEEeccHHHHHHHHHHHHHhhhhc
Q psy1630 79 RCIVILREIPDSTPLEEIRGLFSGKS-CPRFISCEFA---HNNSWYITFENDEDAQKAYRYLREDVREFQ 144 (149)
Q Consensus 79 ~~tl~v~~lp~~~t~~~l~~~F~~~G-~v~~v~~~~~---~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~ 144 (149)
.++|.|-.+|...|.-+|-.+...+- .|..+++-++ .+-.+.|.|.+.++|..-++.+|| +.|.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNG--k~Fn 141 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNG--KQFN 141 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCC--CcCC
Confidence 57899999999999999998887653 3444544332 455699999999999999888887 5664
No 168
>KOG4210|consensus
Probab=60.47 E-value=5.4 Score=31.79 Aligned_cols=59 Identities=8% Similarity=0.026 Sum_probs=46.6
Q ss_pred eeEEEeecCCCCCcHHHHHhhhCCCCCCceeee-----eeeecCeeEEEEeccHHHHHHHHHHH
Q psy1630 79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISC-----EFAHNNSWYITFENDEDAQKAYRYLR 137 (149)
Q Consensus 79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~-----~~~~kg~afVeF~~~e~A~~Ai~~l~ 137 (149)
.++.+++++.+.+.+.+...++...|......+ ....+|++++.|+..+.+..|+....
T Consensus 88 ~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~ 151 (285)
T KOG4210|consen 88 SSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESG 151 (285)
T ss_pred cccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhh
Confidence 567889999888888888899999986443322 12479999999999999999987554
No 169
>KOG2891|consensus
Probab=59.45 E-value=5.5 Score=31.92 Aligned_cols=34 Identities=18% Similarity=0.160 Sum_probs=28.1
Q ss_pred eeEEEeecCCCC------------CcHHHHHhhhCCCCCCceeeee
Q psy1630 79 RCIVILREIPDS------------TPLEEIRGLFSGKSCPRFISCE 112 (149)
Q Consensus 79 ~~tl~v~~lp~~------------~t~~~l~~~F~~~G~v~~v~~~ 112 (149)
+.|||..++|-. .+++-|+..|..||.|+.|.++
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 468999999842 4788899999999999988764
No 170
>PTZ00315 2'-phosphotransferase; Provisional
Probab=57.38 E-value=5.1 Score=35.12 Aligned_cols=50 Identities=16% Similarity=0.363 Sum_probs=37.5
Q ss_pred cCCCceeeeEEeechhhhhhhchhhhHHHHHHhhCCC--cccc---ccc-ccccCC
Q psy1630 27 MDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPN--VQVD---EEG-IKVRPN 76 (149)
Q Consensus 27 ~~~~g~vpi~~~~~F~kvk~l~~d~~~i~~al~~S~~--lev~---~d~-~~vrr~ 76 (149)
|+++|||+|+.++.-.+.+....+.+.|.+..++++. .+++ +++ .+||-.
T Consensus 400 ld~~Gwv~vd~LL~~~~~~~~~~t~e~i~~VV~~ndK~RF~l~~~~~~~~~~IRA~ 455 (582)
T PTZ00315 400 ITSNGYVLLDDILRQPPMRNDPVSVQDVARVVRDSDKQRFKLAYGAADGRLYIRAN 455 (582)
T ss_pred cCCCCCEEHHHHHHHHHhcCCCCCHHHHHHHHHcCCCCceEEeccCCCCceEEEec
Confidence 4589999999999888777655688899999988775 5665 344 367744
No 171
>KOG2590|consensus
Probab=55.18 E-value=3.7 Score=34.84 Aligned_cols=60 Identities=15% Similarity=0.141 Sum_probs=52.7
Q ss_pred ccccceeeccccccchhhhhhhcCCCc---eeeeEEeechhhhhhhchhhhHHHHHHhhCCCc
Q psy1630 5 TYDLACVCCRENLANDAYLLSQMDNDQ---YVPIWTVANFNQVKKLTKDIKLITEVLRESPNV 64 (149)
Q Consensus 5 ~~q~e~yfs~~Nl~~d~~l~~~~~~~g---~vpi~~~~~F~kvk~l~~d~~~i~~al~~S~~l 64 (149)
.++.+||++-.++.+|.+....++..| +.|++....+.++...+++...+..+++.|...
T Consensus 104 ~k~~s~~~~~~~~~~~~~~~~k~~~t~~~~~~~~S~~~~s~~~~~~s~n~~~~~~~~~~sa~~ 166 (448)
T KOG2590|consen 104 DKKKSWPASKPFTPRDSFKGSKPTNTGNGTFLPISKISSSGPVSGGSANNSNIRGPLKGSASS 166 (448)
T ss_pred cccccCcccCCCCccccccCCCccccCCCccCCCccccccccccCcccccccccCcCCCCCcC
Confidence 359999999999999999999999766 899999999999999999888888888775433
No 172
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=53.53 E-value=40 Score=21.84 Aligned_cols=52 Identities=8% Similarity=0.086 Sum_probs=35.2
Q ss_pred EEeecCCCCCcHHHHHhhhCC-CCC-CceeeeeeeecCe--eEEEEeccHHHHHHH
Q psy1630 82 VILREIPDSTPLEEIRGLFSG-KSC-PRFISCEFAHNNS--WYITFENDEDAQKAY 133 (149)
Q Consensus 82 l~v~~lp~~~t~~~l~~~F~~-~G~-v~~v~~~~~~kg~--afVeF~~~e~A~~Ai 133 (149)
-|+=..+..++..+|+..+++ ||. |..|+.-..+.|+ |||.+....+|....
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va 78 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIA 78 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHH
Confidence 455566778899999988887 452 3334332223443 999999998888764
No 173
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=50.70 E-value=50 Score=21.01 Aligned_cols=52 Identities=6% Similarity=0.049 Sum_probs=35.0
Q ss_pred EEeecCCCCCcHHHHHhhhCC-CCC-CceeeeeeeecCe--eEEEEeccHHHHHHH
Q psy1630 82 VILREIPDSTPLEEIRGLFSG-KSC-PRFISCEFAHNNS--WYITFENDEDAQKAY 133 (149)
Q Consensus 82 l~v~~lp~~~t~~~l~~~F~~-~G~-v~~v~~~~~~kg~--afVeF~~~e~A~~Ai 133 (149)
-|+-.++.+++..+|+..++. ||. |..|+.-....++ |||.+...++|...-
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va 71 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIA 71 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHH
Confidence 455667788999999988887 442 3333332223343 999999988887754
No 174
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=50.14 E-value=15 Score=23.56 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=20.3
Q ss_pred eeeecCeeEEEEeccHHHHHHHHHH
Q psy1630 112 EFAHNNSWYITFENDEDAQKAYRYL 136 (149)
Q Consensus 112 ~~~~kg~afVeF~~~e~A~~Ai~~l 136 (149)
+...+||.|||=.++++..+|++.+
T Consensus 40 ~~~lkGyIyVEA~~~~~V~~ai~gi 64 (84)
T PF03439_consen 40 PDSLKGYIYVEAERESDVKEAIRGI 64 (84)
T ss_dssp -TTSTSEEEEEESSHHHHHHHHTT-
T ss_pred eCCCceEEEEEeCCHHHHHHHHhcc
Confidence 4458999999999999999998654
No 175
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=48.86 E-value=5.8 Score=26.06 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=20.6
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFS 101 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~ 101 (149)
.++||-|.|+|...++|++++..+
T Consensus 51 s~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 51 SKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred cCCEEEEeCCCCCCChhhheeeEE
Confidence 578999999999999999987643
No 176
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=44.56 E-value=29 Score=21.43 Aligned_cols=28 Identities=29% Similarity=0.450 Sum_probs=21.8
Q ss_pred CeeEEEEeccHHHHHHHHHHHHHhhhhcCc
Q psy1630 117 NSWYITFENDEDAQKAYRYLREDVREFQNK 146 (149)
Q Consensus 117 g~afVeF~~~e~A~~Ai~~l~~~~~~~~g~ 146 (149)
...+|.|.|..+|.+|-+.|.. ..+.++
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~--~gi~~~ 29 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKK--NGIPVR 29 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHH--CCCcEE
Confidence 4578999999999999988887 345443
No 177
>KOG4019|consensus
Probab=44.54 E-value=16 Score=27.35 Aligned_cols=63 Identities=21% Similarity=0.193 Sum_probs=42.2
Q ss_pred EEEeecCCCCC-----cHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCc
Q psy1630 81 IVILREIPDST-----PLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNK 146 (149)
Q Consensus 81 tl~v~~lp~~~-----t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~ 146 (149)
++.+.+++..+ ......++|.++.+....++ .++.+..-|.|.+++.|..|-..+.+ ..|.|+
T Consensus 12 ~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~-lrsfrrvRi~f~~p~~a~~a~i~~~~--~~f~~~ 79 (193)
T KOG4019|consen 12 AIIACDIHEEVFVNREDKALFENLFRQINEDATFQL-LRSFRRVRINFSNPEAAADARIKLHS--TSFNGK 79 (193)
T ss_pred eeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHH-HHhhceeEEeccChhHHHHHHHHhhh--cccCCC
Confidence 46666666543 23334566776664332222 13566677999999999999999988 699887
No 178
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=42.53 E-value=14 Score=20.14 Aligned_cols=16 Identities=13% Similarity=0.260 Sum_probs=10.7
Q ss_pred CCCcHHHHHhhhCCCC
Q psy1630 89 DSTPLEEIRGLFSGKS 104 (149)
Q Consensus 89 ~~~t~~~l~~~F~~~G 104 (149)
.++++++|++.|++++
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 4688999999999875
No 179
>KOG4410|consensus
Probab=41.09 E-value=31 Score=27.81 Aligned_cols=46 Identities=15% Similarity=0.333 Sum_probs=36.3
Q ss_pred eEEEeecCCCCCcHHHHHhhhCCCCCCc-eeeeeeeecCeeEEEEecc
Q psy1630 80 CIVILREIPDSTPLEEIRGLFSGKSCPR-FISCEFAHNNSWYITFEND 126 (149)
Q Consensus 80 ~tl~v~~lp~~~t~~~l~~~F~~~G~v~-~v~~~~~~kg~afVeF~~~ 126 (149)
.-|+++|||.++...+|+.-+.+-|++. .++. .++.|-||.-|-+.
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw-kg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISW-KGHFGKCFLHFGNR 377 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEee-ecCCcceeEecCCc
Confidence 4599999999999999999888887643 3333 24778899999765
No 180
>PF09341 Pcc1: Transcription factor Pcc1; InterPro: IPR015419 Pcc1 is a proposed transcription factor involved in the expression of genes regulated by alpha-factor and galactose; component of the EKC/KEOPS protein complex with Kae1, Gon7, Bud32, and Cgi121; related to human cancer-testis antigens [].; PDB: 2BNR_C 2P5W_C 3KLA_C 2F54_C 2P5E_C 2F53_C 3ENO_E 3ENC_B.
Probab=39.12 E-value=42 Score=20.80 Aligned_cols=28 Identities=36% Similarity=0.584 Sum_probs=20.5
Q ss_pred CeeEEEEeccHHHHHHHHHHHHHhhhhcC
Q psy1630 117 NSWYITFENDEDAQKAYRYLREDVREFQN 145 (149)
Q Consensus 117 g~afVeF~~~e~A~~Ai~~l~~~~~~~~g 145 (149)
..+-|.|+++++|+-|++.+.-+ .+..+
T Consensus 3 ~~l~i~f~s~~~A~ii~~sL~~d-~e~~~ 30 (76)
T PF09341_consen 3 FTLEIPFESEEKAEIIYRSLKPD-KELKP 30 (76)
T ss_dssp EEEEEE-SSHHHHHHHHHHHHHH-HH-SS
T ss_pred EEEEEEeCCHHHHHHHHHHhCCC-CCCCC
Confidence 45678999999999999988775 55543
No 181
>PF10736 DUF2527: Protein of unknown function (DUF2627) ; InterPro: IPR019672 This entry represents small proteins with unknown function and appear to be restricted to a family of Enterobacterial proteins. It has a highly conserved sequence. Some proteins are annotated as YobF and may be involved in stress responses in E. coli.
Probab=38.03 E-value=15 Score=19.83 Aligned_cols=10 Identities=0% Similarity=0.012 Sum_probs=7.7
Q ss_pred ccceeecccc
Q psy1630 7 DLACVCCREN 16 (149)
Q Consensus 7 q~e~yfs~~N 16 (149)
-+|||||.+-
T Consensus 15 ~Vey~FsAdp 24 (38)
T PF10736_consen 15 SVEYHFSADP 24 (38)
T ss_pred eEEEEEecCc
Confidence 4899999754
No 182
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=35.89 E-value=63 Score=19.79 Aligned_cols=45 Identities=13% Similarity=0.209 Sum_probs=31.8
Q ss_pred HHHHHhhhCCCCCCceeeee-eeecCeeEEEEeccHHHHHHHHHHHH
Q psy1630 93 LEEIRGLFSGKSCPRFISCE-FAHNNSWYITFENDEDAQKAYRYLRE 138 (149)
Q Consensus 93 ~~~l~~~F~~~G~v~~v~~~-~~~kg~afVeF~~~e~A~~Ai~~l~~ 138 (149)
.+++.+...++| +....+. -+..++.|+-++++++++++.+.+..
T Consensus 36 i~~~~~~~~~~G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l~~ 81 (85)
T PF08544_consen 36 IDELKEAAEENG-ALGAKMSGSGGGPTVFALCKDEDDAERVAEALRE 81 (85)
T ss_dssp HHHHHHHHHHTT-ESEEEEETTSSSSEEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC-CCceecCCCCCCCeEEEEECCHHHHHHHHHHHHH
Confidence 567777778888 2222222 12378889889899999999988865
No 183
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=33.14 E-value=27 Score=21.44 Aligned_cols=19 Identities=26% Similarity=0.235 Sum_probs=14.9
Q ss_pred HHHHHhhhCCCCCCceeee
Q psy1630 93 LEEIRGLFSGKSCPRFISC 111 (149)
Q Consensus 93 ~~~l~~~F~~~G~v~~v~~ 111 (149)
..+|+++|++.|.|..+-+
T Consensus 8 ~~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 8 TAEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHHhcCcEEEEEE
Confidence 4689999999998765533
No 184
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=32.67 E-value=1.4e+02 Score=23.53 Aligned_cols=61 Identities=15% Similarity=0.154 Sum_probs=38.8
Q ss_pred eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecC---eeEEEE--eccHHHHHHHHHHHHH
Q psy1630 79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNN---SWYITF--ENDEDAQKAYRYLRED 139 (149)
Q Consensus 79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg---~afVeF--~~~e~A~~Ai~~l~~~ 139 (149)
.+++++.++|++.=.+.|+++...+..|..-+.+..... ..-|.. ++++.|.++++++.+.
T Consensus 180 ~~~~~~~gi~ES~la~~L~~i~~~~~~~~i~s~p~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 245 (255)
T COG1058 180 SRVLRVFGIGESSLAPTLKDLQDEQPNVTIASYPKDGEVRLRELVIRAEARDEEEADALLRWLEGR 245 (255)
T ss_pred EEEEEEcCCChHHHHHHHHHHHhcCCCCEEEecCCCCceeccceEEEEecCCHHHHHHHHHHHHHH
Confidence 356777788888777778888777754444333221111 111555 7888999999888773
No 185
>PRK10905 cell division protein DamX; Validated
Probab=32.15 E-value=73 Score=26.00 Aligned_cols=55 Identities=18% Similarity=0.439 Sum_probs=35.6
Q ss_pred EEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCe-eEE----EEeccHHHHHHHHHHHH
Q psy1630 81 IVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNS-WYI----TFENDEDAQKAYRYLRE 138 (149)
Q Consensus 81 tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~-afV----eF~~~e~A~~Ai~~l~~ 138 (149)
+|-|..+ .+.+.++++-.+.|.-.+.......+|- ||| .|.+.++|++|+..|=.
T Consensus 249 TLQL~A~---Ss~~~l~~fakKlgL~~y~vy~TtRnGkpWYVV~yG~YaSraeAk~AiakLPa 308 (328)
T PRK10905 249 TLQLSSS---SNYDNLNGWAKKENLKNYVVYETTRNGQPWYVLVSGVYASKEEAKRAVSTLPA 308 (328)
T ss_pred EEEEEec---CCHHHHHHHHHHcCCCceEEEEeccCCceEEEEEecCCCCHHHHHHHHHHCCH
Confidence 4444444 3578888888887653333222224454 666 58999999999988754
No 186
>PF02617 ClpS: ATP-dependent Clp protease adaptor protein ClpS; InterPro: IPR003769 In the bacterial cytosol, ATP-dependent protein degradation is performed by several different chaperone-protease pairs, including ClpAP. ClpS directly influences the ClpAP machine by binding to the N-terminal domain of the chaperone ClpA. The degradation of ClpAP substrates, both SsrA-tagged proteins and ClpA itself, is specifically inhibited by ClpS. ClpS modifies ClpA substrate specificity, potentially redirecting degradation by ClpAP toward aggregated proteins []. ClpS is a small alpha/beta protein that consists of three alpha-helices connected to three antiparallel beta-strands []. The protein has a globular shape, with a curved layer of three antiparallel alpha-helices over a twisted antiparallel beta-sheet. Dimerization of ClpS may occur through its N-terminal domain. This short extended N-terminal region in ClpS is followed by the central seven-residue beta-strand, which is flanked by two other beta-strands in a small beta-sheet. ; GO: 0030163 protein catabolic process; PDB: 3O2O_B 1MBU_D 3O2B_C 2WA9_D 3O1F_A 2W9R_A 1MG9_A 1MBX_C 2WA8_C 1R6O_D ....
Probab=31.28 E-value=90 Score=19.64 Aligned_cols=34 Identities=9% Similarity=0.006 Sum_probs=25.6
Q ss_pred eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630 114 AHNNSWYITFENDEDAQKAYRYLREDVREFQNKES 148 (149)
Q Consensus 114 ~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i 148 (149)
...|.|.|...+.+.|+.....+... ....|.||
T Consensus 45 ~~~G~avv~~~~~e~ae~~~~~l~~~-g~~~~~PL 78 (82)
T PF02617_consen 45 HREGRAVVGTGSREEAEEYAEKLQRA-GRDSGHPL 78 (82)
T ss_dssp HHHSEEEEEEEEHHHHHHHHHHHHHH-HHHTT---
T ss_pred hHcCCEeeeeCCHHHHHHHHHHHHHH-hhccCCCe
Confidence 46799999999999999999988775 35566665
No 187
>KOG2295|consensus
Probab=30.55 E-value=9.4 Score=33.28 Aligned_cols=63 Identities=22% Similarity=0.325 Sum_probs=49.6
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeee-----eeeecCeeEEEEeccHHHHHHHHHHHHH
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISC-----EFAHNNSWYITFENDEDAQKAYRYLRED 139 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~-----~~~~kg~afVeF~~~e~A~~Ai~~l~~~ 139 (149)
+..|+++++++++..+.++|..+.+.+--+..+.+ .+.+..+.+|.|+---....|+.+||+.
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~i 296 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGI 296 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhc
Confidence 35688999999999999999999998754443333 1245677889999888888888888873
No 188
>KOG4008|consensus
Probab=29.17 E-value=30 Score=27.01 Aligned_cols=32 Identities=13% Similarity=0.170 Sum_probs=27.4
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCcee
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFI 109 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v 109 (149)
...++|+-|+|...|++.|.++.+++|-+..+
T Consensus 39 eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 39 EKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred cccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 45689999999999999999999999865443
No 189
>COG4009 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.03 E-value=64 Score=20.87 Aligned_cols=42 Identities=7% Similarity=0.073 Sum_probs=26.8
Q ss_pred Ccccccccc-cccCCCceeEEEeecCCCCCcHHHHHhhhCCCC
Q psy1630 63 NVQVDEEGI-KVRPNHKRCIVILREIPDSTPLEEIRGLFSGKS 104 (149)
Q Consensus 63 ~lev~~d~~-~vrr~~~~~tl~v~~lp~~~t~~~l~~~F~~~G 104 (149)
..++++|.. .|=-.....+-+|-=|....++++|++.|++.|
T Consensus 31 k~~L~dDde~aIfnI~gT~Sy~V~Fl~~~~s~eev~~ele~mg 73 (88)
T COG4009 31 KVDLNDDDELAIFNIEGTSSYYVVFLEEVESEEEVERELEDMG 73 (88)
T ss_pred ccccCCCCcEEEEEecCceeEEEEEEeccCCHHHHHHHHHHhC
Confidence 445555432 222222334566667778889999999998888
No 190
>PF12944 DUF3840: Protein of unknown function (DUF3840)
Probab=28.60 E-value=27 Score=22.97 Aligned_cols=21 Identities=24% Similarity=0.121 Sum_probs=15.6
Q ss_pred ccccccceeeccccccchhhh
Q psy1630 3 LTTYDLACVCCRENLANDAYL 23 (149)
Q Consensus 3 ~i~~q~e~yfs~~Nl~~d~~l 23 (149)
.+..|-||||..+-|....-|
T Consensus 8 svteq~efyfprApLnsNAMl 28 (104)
T PF12944_consen 8 SVTEQSEFYFPRAPLNSNAML 28 (104)
T ss_pred EeeeceeeeeccCCCcccccc
Confidence 467899999988877665433
No 191
>PF10970 DUF2772: Protein of unknown function (DUF2772); InterPro: IPR024496 GerPE is required for the formation of functionally normal spores. It could be involved in the establishment of a normal spore coat structure and/or permeability, which allows the access of germinants to their receptor [].
Probab=28.15 E-value=25 Score=24.49 Aligned_cols=14 Identities=7% Similarity=0.036 Sum_probs=12.3
Q ss_pred ccccccceeecccc
Q psy1630 3 LTTYDLACVCCREN 16 (149)
Q Consensus 3 ~i~~q~e~yfs~~N 16 (149)
++++|+++||.++-
T Consensus 34 AVQRq~~~f~~~Eg 47 (121)
T PF10970_consen 34 AVQRQIPLFYGNEG 47 (121)
T ss_pred EEeeecceeecCcc
Confidence 57899999999987
No 192
>KOG2187|consensus
Probab=27.46 E-value=64 Score=28.10 Aligned_cols=32 Identities=25% Similarity=0.259 Sum_probs=26.5
Q ss_pred eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCcc
Q psy1630 114 AHNNSWYITFENDEDAQKAYRYLREDVREFQNKE 147 (149)
Q Consensus 114 ~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ 147 (149)
...+++++.|++++.+.+|+..++| ..+.+..
T Consensus 61 ~~~~~~~~~~et~~~~~ka~~~v~g--~~~k~~~ 92 (534)
T KOG2187|consen 61 KMPKYAYVTFETPSDAGKAINLVDG--LLYKGFI 92 (534)
T ss_pred CCCCceEEEEeccchhhhHHHHHhh--hhhhcch
Confidence 3568899999999999999999999 4665543
No 193
>COG5470 Uncharacterized conserved protein [Function unknown]
Probab=25.55 E-value=68 Score=21.41 Aligned_cols=19 Identities=26% Similarity=0.356 Sum_probs=15.1
Q ss_pred ecCeeEEEEeccHHHHHHH
Q psy1630 115 HNNSWYITFENDEDAQKAY 133 (149)
Q Consensus 115 ~kg~afVeF~~~e~A~~Ai 133 (149)
+.....|||.|.+.|..++
T Consensus 52 ptr~vviEFps~~~ar~~y 70 (96)
T COG5470 52 PTRNVVIEFPSLEAARDCY 70 (96)
T ss_pred cccEEEEEcCCHHHHHHHh
Confidence 3566889999999887765
No 194
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=23.59 E-value=1.8e+02 Score=17.66 Aligned_cols=57 Identities=5% Similarity=0.125 Sum_probs=39.3
Q ss_pred eEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEecc-HHHHHHHHHHH
Q psy1630 80 CIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFEND-EDAQKAYRYLR 137 (149)
Q Consensus 80 ~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~-e~A~~Ai~~l~ 137 (149)
.++.|.++.-..-...+++..++.+.+..+.+.. .+|.+.|+|++. .+.++-++.+.
T Consensus 4 ~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l-~~~~~~V~~d~~~~~~~~i~~ai~ 61 (71)
T COG2608 4 TTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDL-EKGTATVTFDSNKVDIEAIIEAIE 61 (71)
T ss_pred EEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEc-ccCeEEEEEcCCcCCHHHHHHHHH
Confidence 3567777776667778888888887777776654 566799999994 44444444433
No 195
>TIGR02697 WPE_wolbac Wolbachia palindromic element (WPE) domain. This domain conceptually resembles TIGR01045, the Rickettsial palindromic element (RPE) domain. In both cases, a protein-coding palindromic element spreads through a genome, inserting usually in protein-coding regions. The additional protein coding sequence is thought to allow function of the host protein because of location in surface-exposed regions of the protein structure. Note that this model appears to work better in fragment mode.
Probab=23.39 E-value=52 Score=17.77 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=20.2
Q ss_pred eeeccccccchhhhhhhcCCCceeeeEEe
Q psy1630 10 CVCCRENLANDAYLLSQMDNDQYVPIWTV 38 (149)
Q Consensus 10 ~yfs~~Nl~~d~~l~~~~~~~g~vpi~~~ 38 (149)
-|.-++||.-..+. .+|-+..|+|++.-
T Consensus 6 ~hwDp~~li~n~~~-~~l~nk~WIPVSat 33 (36)
T TIGR02697 6 RHWDPENLIANERI-RQLYNKNWIPVSAT 33 (36)
T ss_pred cccCcchhhhhHHH-HHHhccCceeeeee
Confidence 46678888888773 44556889998753
No 196
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=22.90 E-value=1.7e+02 Score=23.61 Aligned_cols=56 Identities=16% Similarity=0.106 Sum_probs=44.5
Q ss_pred eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee------------eecCeeEEEEeccHHHHHHHH
Q psy1630 79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF------------AHNNSWYITFENDEDAQKAYR 134 (149)
Q Consensus 79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~------------~~kg~afVeF~~~e~A~~Ai~ 134 (149)
.|++...|+..+++.-.+-.-|-+||+|+.|-+-. ..+-+..+.|-+.+.|-.-+.
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYN 82 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYN 82 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHH
Confidence 35788899999999999999999999999887621 135678999999988765543
No 197
>KOG4483|consensus
Probab=22.50 E-value=1.2e+02 Score=25.72 Aligned_cols=53 Identities=13% Similarity=0.157 Sum_probs=37.6
Q ss_pred eeEEEeecCCCCCcHHHHHhhhCCCCCC--ceeeeeeeecCeeEEEEeccHHHHHHHH
Q psy1630 79 RCIVILREIPDSTPLEEIRGLFSGKSCP--RFISCEFAHNNSWYITFENDEDAQKAYR 134 (149)
Q Consensus 79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v--~~v~~~~~~kg~afVeF~~~e~A~~Ai~ 134 (149)
...|-|.++|...-.++|-..|+.||.- .+.++ -...||-.|++...|..|+.
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWv---DdthalaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWV---DDTHALAVFSSVNRAAEALT 445 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEe---ecceeEEeecchHHHHHHhh
Confidence 3568888999888888888899988741 11122 23467888888888887764
No 198
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=22.38 E-value=1.2e+02 Score=21.25 Aligned_cols=48 Identities=19% Similarity=0.191 Sum_probs=35.5
Q ss_pred cHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHH
Q psy1630 92 PLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLRED 139 (149)
Q Consensus 92 t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~ 139 (149)
+.+++.++....|-+-.++......|.+....+++++...+++.+...
T Consensus 27 ~~~~~~~~~~~~~~p~vvKp~~g~gs~gv~~~~~~~~l~~~~~~~~~~ 74 (184)
T PF13535_consen 27 SEEELRAFAEDLGFPFVVKPVDGSGSRGVFIVHSPEELEAALAEIRED 74 (184)
T ss_dssp SHHHHHHHHHHSSSSEEEEESS-STTTT-EEESSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCEEEEcCccccCCCEEEeCCHHHHHHHHHHHHHh
Confidence 678899998888866666665555556666788999999999888763
No 199
>PRK13022 secF preprotein translocase subunit SecF; Reviewed
Probab=21.37 E-value=4.2e+02 Score=20.98 Aligned_cols=52 Identities=13% Similarity=0.211 Sum_probs=31.9
Q ss_pred cCCCCCcHHHHHhhhCCCCCCceeeeee-eecCeeEEEEe--ccHHHHHHHHHHHH
Q psy1630 86 EIPDSTPLEEIRGLFSGKSCPRFISCEF-AHNNSWYITFE--NDEDAQKAYRYLRE 138 (149)
Q Consensus 86 ~lp~~~t~~~l~~~F~~~G~v~~v~~~~-~~kg~afVeF~--~~e~A~~Ai~~l~~ 138 (149)
..+.+.+.+++++.+++.|... .++.. +..+...|.+. +.+++++..+.++.
T Consensus 48 ~~~~~~~~~~v~~~~~~~~~~~-~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~ 102 (289)
T PRK13022 48 RFEQPADLEQVREALEKAGFED-AQVQNFGSSRDVLIRLPPASEELSEKVKKALNK 102 (289)
T ss_pred EcCCCCCHHHHHHHHHhcCCCC-ceEEEcCCCCEEEEEeCCCChHHHHHHHHHHHh
Confidence 4456789999999999875321 22221 22334567776 55666666666654
No 200
>PF14893 PNMA: PNMA
Probab=21.09 E-value=58 Score=26.62 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=19.8
Q ss_pred eeEEEeecCCCCCcHHHHHhhhC
Q psy1630 79 RCIVILREIPDSTPLEEIRGLFS 101 (149)
Q Consensus 79 ~~tl~v~~lp~~~t~~~l~~~F~ 101 (149)
.+.+.|.|+|.+.++++|++.+.
T Consensus 18 ~r~lLv~giP~dc~~~ei~e~l~ 40 (331)
T PF14893_consen 18 QRALLVLGIPEDCEEAEIEEALQ 40 (331)
T ss_pred hhhheeecCCCCCCHHHHHHHHH
Confidence 46799999999999999888765
No 201
>PF14044 NETI: NETI protein
Probab=21.03 E-value=36 Score=20.46 Aligned_cols=16 Identities=25% Similarity=0.736 Sum_probs=11.3
Q ss_pred hhhcCCCceeeeEEee
Q psy1630 24 LSQMDNDQYVPIWTVA 39 (149)
Q Consensus 24 ~~~~~~~g~vpi~~~~ 39 (149)
+.+|..+||.|+.-+-
T Consensus 14 L~RM~~eGY~PvrR~E 29 (57)
T PF14044_consen 14 LARMKKEGYMPVRRIE 29 (57)
T ss_pred HHHHHHcCCCceeecc
Confidence 3567788998887643
No 202
>COG1859 KptA RNA:NAD 2'-phosphotransferase [Translation, ribosomal structure and biogenesis]
Probab=20.37 E-value=46 Score=25.45 Aligned_cols=48 Identities=15% Similarity=0.143 Sum_probs=30.8
Q ss_pred cCCCceeeeEEeechhhhhhhchhhhHHHHHHhhCCC--cccccccccccCC
Q psy1630 27 MDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPN--VQVDEEGIKVRPN 76 (149)
Q Consensus 27 ~~~~g~vpi~~~~~F~kvk~l~~d~~~i~~al~~S~~--lev~~d~~~vrr~ 76 (149)
++.+||++++-+....+-.---.+.+.+....+.++. .++++ .+||..
T Consensus 54 lD~~Gwa~i~~l~~~~~k~~~~~~~~~l~~iV~~d~K~Rf~l~~--~~IRA~ 103 (211)
T COG1859 54 LDEEGWADIDELLEGLRKAGRWLTRELLLAVVATDDKGRFELKE--GKIRAR 103 (211)
T ss_pred eccccchhHHHHHHHHHhhccCCCHHHHHHHHhcCCCceeEecc--cceeec
Confidence 4578999977776554443334567777777777765 45554 556644
Done!