Query psy1630
Match_columns 149
No_of_seqs 203 out of 1486
Neff 8.0
Searched_HMMs 29240
Date Fri Aug 16 17:49:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1630.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1630hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2voo_A Lupus LA protein; RNA-b 100.0 7.2E-44 2.5E-48 265.9 3.4 144 3-149 15-180 (193)
2 2cqk_A C-MPL binding protein; 100.0 1.4E-33 4.9E-38 189.1 -1.4 79 2-80 16-94 (101)
3 1s29_A LA protein; winged heli 100.0 7.7E-33 2.6E-37 183.2 -0.3 76 2-77 12-89 (92)
4 4fxv_A ELAV-like protein 1; RN 99.8 5.2E-19 1.8E-23 118.1 4.5 70 78-149 18-92 (99)
5 1sjq_A Polypyrimidine tract-bi 99.7 3E-19 1E-23 120.9 3.0 71 78-149 15-85 (105)
6 2ad9_A Polypyrimidine tract-bi 99.7 1.7E-18 5.9E-23 119.6 6.8 72 77-149 29-100 (119)
7 1x4d_A Matrin 3; structural ge 99.7 1.1E-18 3.6E-23 117.7 5.2 72 77-149 13-85 (102)
8 2cq1_A PTB-like protein L; RRM 99.7 1.6E-18 5.4E-23 116.5 5.4 72 77-149 13-84 (101)
9 1x4f_A Matrin 3; structural ge 99.7 3.5E-18 1.2E-22 116.9 6.8 72 77-149 23-95 (112)
10 1wex_A Hypothetical protein (r 99.7 5.2E-18 1.8E-22 114.5 7.0 72 77-149 13-84 (104)
11 3r27_A HnRNP L, heterogeneous 99.7 1.6E-18 5.5E-23 116.3 4.3 72 77-149 19-90 (100)
12 3s8s_A Histone-lysine N-methyl 99.7 2.8E-18 9.7E-23 116.7 5.0 71 77-149 4-79 (110)
13 2lkz_A RNA-binding protein 5; 99.7 3.9E-18 1.3E-22 113.3 5.0 72 78-149 8-88 (95)
14 1x4e_A RNA binding motif, sing 99.7 1.5E-17 5.2E-22 107.1 7.3 70 78-149 4-78 (85)
15 4f25_A Polyadenylate-binding p 99.7 3.3E-18 1.1E-22 116.9 4.3 69 79-149 5-76 (115)
16 3p5t_L Cleavage and polyadenyl 99.7 3.9E-18 1.3E-22 111.5 3.8 68 80-149 2-76 (90)
17 3mdf_A Peptidyl-prolyl CIS-tra 99.7 5.6E-18 1.9E-22 109.0 4.5 71 77-149 5-80 (85)
18 2wbr_A GW182, gawky, LD47780P; 99.7 2.3E-18 7.7E-23 112.8 2.1 68 79-149 7-74 (89)
19 1s79_A Lupus LA protein; RRM, 99.7 4.4E-18 1.5E-22 114.5 3.4 70 77-149 9-82 (103)
20 2krb_A Eukaryotic translation 99.7 4.5E-18 1.5E-22 109.0 3.2 68 80-149 2-79 (81)
21 3bs9_A Nucleolysin TIA-1 isofo 99.7 1E-17 3.4E-22 108.3 4.5 71 77-149 4-79 (87)
22 4a8x_A RNA-binding protein wit 99.7 1.3E-17 4.3E-22 107.9 4.9 70 78-149 3-78 (88)
23 2jvr_A Nucleolar protein 3; RN 99.7 4.8E-18 1.6E-22 116.0 2.9 70 78-149 27-98 (111)
24 2hvz_A Splicing factor, argini 99.7 1.5E-17 5.3E-22 110.5 5.2 68 80-149 1-68 (101)
25 2lxi_A RNA-binding protein 10; 99.7 2.1E-18 7.2E-23 113.4 0.8 69 80-149 2-76 (91)
26 1whx_A Hypothetical protein ri 99.7 2.3E-17 7.9E-22 112.1 5.3 69 78-149 9-77 (111)
27 3md1_A Nuclear and cytoplasmic 99.7 2.8E-17 9.6E-22 105.2 5.2 68 80-149 2-74 (83)
28 3ns6_A Eukaryotic translation 99.7 1.1E-17 3.7E-22 111.6 3.4 69 79-149 6-86 (100)
29 2cpj_A Non-POU domain-containi 99.7 5.4E-17 1.8E-21 107.6 6.2 70 77-149 13-82 (99)
30 2cq0_A Eukaryotic translation 99.7 3.1E-17 1E-21 109.4 5.0 72 76-149 12-88 (103)
31 2kvi_A Nuclear polyadenylated 99.7 8.6E-17 2.9E-21 106.2 7.1 68 77-149 8-76 (96)
32 2dnz_A Probable RNA-binding pr 99.7 5E-17 1.7E-21 106.7 5.9 70 78-149 4-78 (95)
33 2la6_A RNA-binding protein FUS 99.7 5.2E-17 1.8E-21 107.7 6.0 71 77-149 11-94 (99)
34 2dnq_A RNA-binding protein 4B; 99.7 4.8E-17 1.6E-21 106.1 5.6 68 77-149 6-73 (90)
35 2dgv_A HnRNP M, heterogeneous 99.7 5.4E-17 1.8E-21 105.9 5.8 71 77-149 6-79 (92)
36 2jrs_A RNA-binding protein 39; 99.7 7.1E-17 2.4E-21 109.2 6.4 71 77-149 24-99 (108)
37 2ywk_A Putative RNA-binding pr 99.7 3E-17 1E-21 107.8 4.3 71 77-149 14-88 (95)
38 2ek1_A RNA-binding protein 12; 99.7 4.4E-17 1.5E-21 106.9 5.1 70 78-149 14-88 (95)
39 2cpf_A RNA binding motif prote 99.7 2.2E-17 7.5E-22 109.1 3.6 70 78-149 4-81 (98)
40 2la4_A Nuclear and cytoplasmic 99.7 5.2E-17 1.8E-21 107.9 5.4 69 78-149 26-94 (101)
41 2x1f_A MRNA 3'-END-processing 99.7 3.3E-17 1.1E-21 108.0 4.4 69 79-149 2-75 (96)
42 2err_A Ataxin-2-binding protei 99.7 5.3E-17 1.8E-21 109.8 5.4 71 77-149 27-100 (109)
43 1x5s_A Cold-inducible RNA-bind 99.7 3E-17 1E-21 109.2 4.1 71 77-149 10-85 (102)
44 2do4_A Squamous cell carcinoma 99.7 5.6E-17 1.9E-21 107.6 5.4 71 77-149 15-89 (100)
45 2dnm_A SRP46 splicing factor; 99.7 5E-17 1.7E-21 108.4 5.1 71 77-149 11-86 (103)
46 2d9p_A Polyadenylate-binding p 99.7 5.2E-17 1.8E-21 108.3 5.1 71 77-149 13-86 (103)
47 2cqb_A Peptidyl-prolyl CIS-tra 99.7 2.5E-17 8.4E-22 109.6 3.5 71 77-149 10-85 (102)
48 1whw_A Hypothetical protein ri 99.7 3.2E-17 1.1E-21 108.5 4.0 70 78-149 7-81 (99)
49 2cph_A RNA binding motif prote 99.7 6.1E-17 2.1E-21 108.5 5.4 71 77-149 13-90 (107)
50 1x5t_A Splicing factor 3B subu 99.7 2.5E-17 8.5E-22 108.3 3.5 70 78-149 4-79 (96)
51 1p27_B RNA-binding protein 8A; 99.7 6E-17 2E-21 108.4 5.3 71 77-149 21-96 (106)
52 1why_A Hypothetical protein ri 99.7 5.6E-17 1.9E-21 107.1 4.8 70 77-149 15-86 (97)
53 2cqc_A Arginine/serine-rich sp 99.7 5.1E-17 1.7E-21 106.5 4.4 71 77-149 13-88 (95)
54 2dgx_A KIAA0430 protein; RRM d 99.7 3.1E-17 1.1E-21 108.4 3.3 71 77-149 7-83 (96)
55 2dgs_A DAZ-associated protein 99.7 7.2E-17 2.5E-21 106.9 5.0 70 77-149 8-82 (99)
56 2cq3_A RNA-binding protein 9; 99.7 6.9E-17 2.4E-21 107.7 4.9 71 77-149 13-86 (103)
57 1oo0_B CG8781-PA, drosophila Y 99.7 7.4E-17 2.5E-21 108.7 5.0 71 77-149 24-99 (110)
58 1x4a_A Splicing factor, argini 99.7 7.6E-17 2.6E-21 108.6 5.0 71 77-149 20-92 (109)
59 2ytc_A PRE-mRNA-splicing facto 99.7 4.4E-17 1.5E-21 104.9 3.7 70 77-149 10-80 (85)
60 2jvo_A Nucleolar protein 3; nu 99.7 8.6E-17 2.9E-21 108.8 5.3 68 77-149 29-96 (108)
61 2cpi_A CCR4-NOT transcription 99.7 3.6E-17 1.2E-21 110.9 3.4 71 77-149 13-94 (111)
62 1wf1_A RNA-binding protein RAL 99.7 1.5E-16 5.1E-21 107.4 6.3 67 78-149 26-93 (110)
63 3lqv_A PRE-mRNA branch site pr 99.7 9.8E-17 3.3E-21 109.0 5.4 71 77-149 6-78 (115)
64 2e5j_A Methenyltetrahydrofolat 99.7 7.5E-17 2.6E-21 106.6 4.7 69 78-149 18-87 (97)
65 2e5h_A Zinc finger CCHC-type a 99.7 3.5E-17 1.2E-21 107.2 3.0 71 77-149 14-89 (94)
66 2cqi_A Nucleolysin TIAR; RNA r 99.7 5.4E-17 1.8E-21 108.2 3.9 71 77-149 13-86 (103)
67 2dgt_A RNA-binding protein 30; 99.7 1.6E-16 5.3E-21 104.0 5.9 68 77-149 8-75 (92)
68 3ulh_A THO complex subunit 4; 99.6 1.1E-16 3.8E-21 107.3 5.3 71 77-149 27-101 (107)
69 3ex7_B RNA-binding protein 8A; 99.6 1.4E-16 4.8E-21 109.8 5.9 71 77-149 20-95 (126)
70 2cqp_A RNA-binding protein 12; 99.6 8.9E-17 3.1E-21 106.1 4.7 70 78-149 14-88 (98)
71 1x5u_A Splicing factor 3B subu 99.6 8.9E-17 3E-21 107.4 4.6 71 77-149 13-88 (105)
72 2khc_A Testis-specific RNP-typ 99.6 9.1E-17 3.1E-21 109.6 4.8 70 78-149 39-113 (118)
73 3beg_B Splicing factor, argini 99.6 6.5E-17 2.2E-21 110.4 4.0 67 78-148 15-81 (115)
74 2dnh_A Bruno-like 5, RNA bindi 99.6 1.5E-16 5E-21 106.3 5.6 71 77-149 13-90 (105)
75 2fy1_A RNA-binding motif prote 99.6 8.6E-17 3E-21 110.0 4.5 70 78-149 6-79 (116)
76 3ucg_A Polyadenylate-binding p 99.6 4.7E-17 1.6E-21 105.5 2.9 68 79-149 6-78 (89)
77 2dgp_A Bruno-like 4, RNA bindi 99.6 1.4E-16 4.6E-21 106.7 5.3 71 77-149 11-89 (106)
78 1p1t_A Cleavage stimulation fa 99.6 6.1E-17 2.1E-21 107.9 3.5 70 78-149 7-81 (104)
79 2xnq_A Nuclear polyadenylated 99.6 9E-17 3.1E-21 106.6 4.3 67 78-149 21-88 (97)
80 1wg1_A KIAA1579 protein, homol 99.6 7.2E-17 2.5E-21 105.0 3.7 68 78-149 4-71 (88)
81 1uaw_A Mouse-musashi-1; RNP-ty 99.6 8.1E-17 2.8E-21 101.7 3.7 67 80-149 1-72 (77)
82 2cpz_A CUG triplet repeat RNA- 99.6 8.2E-17 2.8E-21 109.4 3.9 70 78-149 24-98 (115)
83 2dgo_A Cytotoxic granule-assoc 99.6 8.1E-17 2.8E-21 109.4 3.8 71 77-149 13-88 (115)
84 2cpe_A RNA-binding protein EWS 99.6 1.5E-16 5.1E-21 107.7 5.1 71 77-149 13-96 (113)
85 2i2y_A Fusion protein consists 99.6 5.4E-17 1.9E-21 115.2 3.0 70 78-149 72-141 (150)
86 2dhg_A TRNA selenocysteine ass 99.6 9.7E-17 3.3E-21 107.0 4.0 70 78-149 8-83 (104)
87 1x4g_A Nucleolysin TIAR; struc 99.6 6.3E-17 2.1E-21 109.1 3.1 70 77-149 23-92 (109)
88 2kt5_A RNA and export factor-b 99.6 2.3E-16 7.8E-21 108.6 5.7 70 78-149 34-107 (124)
89 2nlw_A Eukaryotic translation 99.6 5.4E-17 1.8E-21 109.0 2.5 69 79-149 15-93 (105)
90 1x4c_A Splicing factor, argini 99.6 7.1E-17 2.4E-21 108.9 3.1 65 77-145 13-77 (108)
91 2mss_A Protein (musashi1); RNA 99.6 6.8E-17 2.3E-21 101.7 2.7 66 81-149 1-71 (75)
92 2ki2_A SS-DNA binding protein 99.6 6.8E-17 2.3E-21 105.1 2.7 67 80-149 2-73 (90)
93 1wi8_A EIF-4B, eukaryotic tran 99.6 1.8E-16 6.3E-21 105.9 4.9 69 77-149 13-87 (104)
94 2div_A TRNA selenocysteine ass 99.6 1.1E-16 3.8E-21 105.8 3.7 68 78-147 8-81 (99)
95 2a3j_A U1 small nuclear ribonu 99.6 6.8E-17 2.3E-21 112.7 2.7 71 77-149 27-103 (127)
96 1x4h_A RNA-binding protein 28; 99.6 1.1E-16 3.8E-21 107.8 3.6 71 77-149 13-94 (111)
97 1nu4_A U1A RNA binding domain; 99.6 9.4E-17 3.2E-21 105.7 3.2 70 78-149 7-82 (97)
98 2j76_E EIF-4B, EIF4B, eukaryot 99.6 1.2E-16 4.2E-21 106.3 3.7 68 78-149 18-91 (100)
99 2do0_A HnRNP M, heterogeneous 99.6 1.7E-16 5.9E-21 107.5 4.5 71 77-149 13-87 (114)
100 2dnp_A RNA-binding protein 14; 99.6 1E-16 3.5E-21 104.5 3.1 68 77-149 7-74 (90)
101 2kxn_B Transformer-2 protein h 99.6 1.6E-16 5.3E-21 110.8 4.2 70 78-149 45-119 (129)
102 2cq4_A RNA binding motif prote 99.6 1.7E-16 5.7E-21 107.8 4.2 69 78-149 24-97 (114)
103 3s7r_A Heterogeneous nuclear r 99.6 1.1E-16 3.8E-21 103.5 3.2 70 77-149 9-83 (87)
104 2m2b_A RNA-binding protein 10; 99.6 2.1E-16 7E-21 110.1 4.7 70 77-149 21-101 (131)
105 1wg5_A Heterogeneous nuclear r 99.6 2E-16 7E-21 106.0 4.5 70 77-149 13-87 (104)
106 2dis_A Unnamed protein product 99.6 8E-17 2.7E-21 108.3 2.3 77 73-149 2-85 (109)
107 1fjc_A Nucleolin RBD2, protein 99.6 8.5E-17 2.9E-21 105.9 2.2 71 77-149 14-84 (96)
108 3n9u_C Cleavage and polyadenyl 99.6 1.2E-16 4E-21 115.0 3.2 70 78-149 54-130 (156)
109 3tyt_A Heterogeneous nuclear r 99.6 2.2E-16 7.4E-21 118.1 4.6 70 78-149 3-73 (205)
110 2lmi_A GRSF-1, G-rich sequence 99.6 2.2E-16 7.6E-21 106.3 4.1 69 78-149 10-85 (107)
111 2g4b_A Splicing factor U2AF 65 99.6 3.9E-16 1.3E-20 111.7 5.4 98 49-149 59-167 (172)
112 2hgl_A HNRPF protein, heteroge 99.6 1.8E-16 6.1E-21 111.8 3.5 70 77-149 42-118 (136)
113 2db1_A Heterogeneous nuclear r 99.6 1.3E-16 4.5E-21 109.5 2.7 69 78-149 16-91 (118)
114 1wez_A HnRNP H', FTP-3, hetero 99.6 2.8E-16 9.6E-21 105.3 4.1 68 78-149 14-85 (102)
115 1iqt_A AUF1, heterogeneous nuc 99.6 1.2E-16 4.3E-21 100.4 2.1 66 81-149 1-71 (75)
116 2dgu_A Heterogeneous nuclear r 99.6 1.4E-16 4.7E-21 106.4 2.3 67 78-149 10-76 (103)
117 2cqh_A IGF-II mRNA-binding pro 99.6 1.9E-16 6.5E-21 103.7 2.8 69 78-149 7-76 (93)
118 2hzc_A Splicing factor U2AF 65 99.6 1.1E-16 3.9E-21 103.2 1.5 68 78-149 5-83 (87)
119 2fc9_A NCL protein; structure 99.6 1.4E-16 4.9E-21 105.8 2.0 71 77-149 13-84 (101)
120 2dng_A Eukaryotic translation 99.6 5.1E-16 1.8E-20 103.5 4.7 69 77-149 13-86 (103)
121 2cpd_A Apobec-1 stimulating pr 99.6 3.7E-16 1.3E-20 103.5 3.9 68 77-149 13-82 (99)
122 2dh8_A DAZ-associated protein 99.6 2.2E-16 7.6E-21 105.6 2.8 70 77-149 14-88 (105)
123 1wel_A RNA-binding protein 12; 99.6 3.2E-16 1.1E-20 108.1 3.6 69 78-149 24-97 (124)
124 2cpy_A RNA-binding protein 12; 99.6 2.1E-16 7.3E-21 107.5 2.7 70 77-149 13-87 (114)
125 3md3_A Nuclear and cytoplasmic 99.6 9.9E-16 3.4E-20 108.5 6.3 99 49-149 49-160 (166)
126 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 2.4E-16 8.3E-21 110.0 2.8 71 77-149 61-136 (140)
127 3d2w_A TAR DNA-binding protein 99.6 3.3E-16 1.1E-20 102.5 3.1 68 77-148 9-76 (89)
128 3zzy_A Polypyrimidine tract-bi 99.6 6.2E-16 2.1E-20 108.2 4.7 69 78-148 27-98 (130)
129 2cq2_A Hypothetical protein LO 99.6 1.6E-16 5.3E-21 109.0 1.3 68 78-148 24-98 (114)
130 2dgw_A Probable RNA-binding pr 99.6 5.6E-16 1.9E-20 101.0 3.8 69 77-149 8-80 (91)
131 1rk8_A CG8781-PA, CG8781-PA pr 99.6 6.7E-16 2.3E-20 111.4 4.5 71 77-149 70-145 (165)
132 1h2v_Z 20 kDa nuclear CAP bind 99.6 5E-16 1.7E-20 110.9 3.8 70 78-149 38-112 (156)
133 1x5o_A RNA binding motif, sing 99.6 1.4E-15 4.7E-20 103.1 5.7 69 77-147 23-95 (114)
134 2dnn_A RNA-binding protein 12; 99.6 6.3E-16 2.1E-20 105.1 3.8 67 78-148 15-85 (109)
135 2jwn_A Embryonic polyadenylate 99.6 3.9E-16 1.3E-20 107.3 2.8 69 78-149 35-108 (124)
136 1u6f_A Tcubp1, RNA-binding pro 99.6 3.3E-16 1.1E-20 109.6 2.4 70 78-149 41-115 (139)
137 2cqd_A RNA-binding region cont 99.6 3.3E-16 1.1E-20 106.5 2.1 70 77-149 15-89 (116)
138 4f02_A Polyadenylate-binding p 99.6 1.1E-15 3.8E-20 114.1 5.0 128 20-149 29-174 (213)
139 2cpx_A Hypothetical protein FL 99.6 5.3E-16 1.8E-20 105.2 2.9 70 78-149 24-98 (115)
140 2lea_A Serine/arginine-rich sp 99.6 4.1E-16 1.4E-20 109.5 2.3 70 78-149 46-120 (135)
141 2fc8_A NCL protein; structure 99.6 6.6E-16 2.3E-20 102.6 3.0 71 77-149 13-85 (102)
142 4f02_A Polyadenylate-binding p 99.6 9.6E-16 3.3E-20 114.5 4.2 71 77-149 13-88 (213)
143 2qfj_A FBP-interacting repress 99.6 3.3E-15 1.1E-19 110.4 7.0 99 49-149 78-198 (216)
144 2dha_A FLJ20171 protein; RRM d 99.6 7.1E-16 2.4E-20 107.0 3.0 70 77-149 21-98 (123)
145 2diu_A KIAA0430 protein; struc 99.6 1.3E-15 4.6E-20 100.7 4.2 63 80-149 10-77 (96)
146 2e5g_A U6 snRNA-specific termi 99.6 1.1E-15 3.9E-20 100.3 3.8 69 78-149 7-75 (94)
147 2rs2_A Musashi-1, RNA-binding 99.6 5.2E-16 1.8E-20 105.0 2.2 69 77-148 23-96 (109)
148 1x4b_A Heterogeneous nuclear r 99.6 7.9E-16 2.7E-20 104.7 3.1 69 78-149 26-99 (116)
149 2lcw_A RNA-binding protein FUS 99.3 1.9E-16 6.5E-21 107.9 0.0 70 78-149 6-88 (116)
150 3egn_A RNA-binding protein 40; 99.6 1E-15 3.5E-20 107.8 3.7 71 77-149 43-123 (143)
151 2kn4_A Immunoglobulin G-bindin 99.6 5.6E-16 1.9E-20 110.6 2.4 70 78-149 69-143 (158)
152 1b7f_A Protein (SXL-lethal pro 99.6 3.1E-15 1.1E-19 106.4 6.0 99 49-149 53-164 (168)
153 2hgn_A Heterogeneous nuclear r 99.6 6.4E-16 2.2E-20 109.3 2.4 68 78-149 45-116 (139)
154 2e44_A Insulin-like growth fac 99.6 1.1E-15 3.9E-20 100.4 3.4 71 77-149 13-85 (96)
155 2xs2_A Deleted in azoospermia- 99.6 7.2E-16 2.5E-20 102.5 2.3 67 78-148 8-78 (102)
156 1fj7_A Nucleolin RBD1, protein 99.6 4.4E-16 1.5E-20 103.4 1.1 69 78-149 16-88 (101)
157 2hgm_A HNRPF protein, heteroge 99.6 2.3E-15 7.8E-20 104.9 4.7 69 77-149 40-114 (126)
158 1fxl_A Paraneoplastic encephal 99.6 3.6E-15 1.2E-19 105.7 5.9 126 21-148 17-160 (167)
159 2e5i_A Heterogeneous nuclear r 99.6 3.4E-15 1.2E-19 103.7 5.6 64 80-146 26-90 (124)
160 1fxl_A Paraneoplastic encephal 99.6 2.1E-15 7.1E-20 107.0 4.5 69 79-149 2-75 (167)
161 3q2s_C Cleavage and polyadenyl 99.6 1.2E-15 4.2E-20 115.9 3.4 70 78-149 67-143 (229)
162 1x5p_A Negative elongation fac 99.6 2.8E-15 9.4E-20 99.0 4.7 68 77-149 13-80 (97)
163 1b7f_A Protein (SXL-lethal pro 99.6 2.7E-15 9.2E-20 106.8 4.8 70 78-149 2-76 (168)
164 2yh0_A Splicing factor U2AF 65 99.5 3.3E-15 1.1E-19 109.1 5.1 70 78-149 113-187 (198)
165 2cqg_A TDP-43, TAR DNA-binding 99.5 1.7E-15 5.9E-20 100.8 3.1 68 77-148 13-85 (103)
166 2f3j_A RNA and export factor b 99.5 3.2E-15 1.1E-19 109.5 4.7 69 79-149 88-160 (177)
167 3md3_A Nuclear and cytoplasmic 99.5 1.9E-15 6.6E-20 107.0 3.2 68 80-149 1-72 (166)
168 1qm9_A Polypyrimidine tract-bi 99.5 3.8E-15 1.3E-19 109.3 4.7 69 79-149 3-72 (198)
169 1sjr_A Polypyrimidine tract-bi 99.5 2.3E-15 7.8E-20 109.2 3.3 71 77-149 44-117 (164)
170 1fje_B Nucleolin RBD12, protei 99.5 2.2E-15 7.4E-20 108.3 3.1 98 49-149 62-167 (175)
171 2bz2_A Negative elongation fac 99.5 9.7E-15 3.3E-19 100.7 6.0 67 78-149 38-104 (121)
172 2dnl_A Cytoplasmic polyadenyla 99.5 3.2E-15 1.1E-19 101.7 3.2 58 78-136 7-72 (114)
173 1wf0_A TDP-43, TAR DNA-binding 99.5 8.3E-15 2.8E-19 94.9 4.8 67 78-148 4-70 (88)
174 3nmr_A Cugbp ELAV-like family 99.5 1.7E-14 5.9E-19 103.0 6.9 70 78-149 94-170 (175)
175 2cjk_A Nuclear polyadenylated 99.5 7.2E-15 2.4E-19 104.6 4.4 124 21-149 18-159 (167)
176 1l3k_A Heterogeneous nuclear r 99.5 9.9E-15 3.4E-19 106.4 5.1 125 21-149 28-176 (196)
177 3nmr_A Cugbp ELAV-like family 99.5 1.4E-14 4.7E-19 103.6 5.6 65 78-144 2-73 (175)
178 2adc_A Polypyrimidine tract-bi 99.5 5.1E-15 1.7E-19 111.6 3.4 71 77-149 32-103 (229)
179 2adc_A Polypyrimidine tract-bi 99.5 2.8E-14 9.6E-19 107.5 6.8 69 79-149 151-221 (229)
180 2qfj_A FBP-interacting repress 99.5 9.9E-15 3.4E-19 107.9 4.2 70 78-149 27-101 (216)
181 3sde_A Paraspeckle component 1 99.5 3.3E-14 1.1E-18 109.2 7.0 98 49-148 66-171 (261)
182 1qm9_A Polypyrimidine tract-bi 99.5 2.4E-14 8.1E-19 105.0 6.0 69 79-149 120-190 (198)
183 3smz_A Protein raver-1, ribonu 99.5 1.7E-14 5.7E-19 111.4 5.2 128 16-149 29-168 (284)
184 2cjk_A Nuclear polyadenylated 99.5 2.8E-14 9.5E-19 101.5 4.5 68 78-149 2-74 (167)
185 3pgw_S U1-70K; protein-RNA com 99.5 5E-14 1.7E-18 116.1 6.6 70 78-149 101-175 (437)
186 3smz_A Protein raver-1, ribonu 99.5 5.4E-14 1.8E-18 108.5 6.1 99 49-149 145-257 (284)
187 3sde_A Paraspeckle component 1 99.5 2.8E-14 9.4E-19 109.6 4.4 69 78-149 21-89 (261)
188 1l3k_A Heterogeneous nuclear r 99.5 1.6E-14 5.6E-19 105.2 2.9 68 78-148 12-84 (196)
189 3pgw_A U1-A; protein-RNA compl 99.5 2.9E-14 9.9E-19 109.9 4.3 70 78-149 206-276 (282)
190 2pe8_A Splicing factor 45; RRM 99.5 3.1E-14 1.1E-18 96.0 3.9 70 78-149 7-87 (105)
191 3pgw_A U1-A; protein-RNA compl 99.5 3.9E-14 1.3E-18 109.2 4.8 70 78-149 8-83 (282)
192 3u1l_A PRE-mRNA-splicing facto 99.4 3.4E-14 1.2E-18 108.8 4.0 68 78-148 133-221 (240)
193 2j8a_A Histone-lysine N-methyl 99.4 3.6E-14 1.2E-18 99.0 2.6 68 80-149 3-89 (136)
194 2dit_A HIV TAT specific factor 99.4 1.1E-13 3.7E-18 93.8 4.6 71 77-149 13-95 (112)
195 2g4b_A Splicing factor U2AF 65 99.4 2.5E-14 8.5E-19 102.2 1.5 68 78-149 3-81 (172)
196 3tyt_A Heterogeneous nuclear r 99.4 1.1E-13 3.8E-18 103.3 3.6 67 79-147 123-194 (205)
197 2ghp_A U4/U6 snRNA-associated 99.4 2.7E-13 9.4E-18 104.9 5.5 97 49-149 89-190 (292)
198 2yh0_A Splicing factor U2AF 65 99.4 5.9E-14 2E-18 102.4 1.5 67 79-149 4-81 (198)
199 2ghp_A U4/U6 snRNA-associated 99.4 1.1E-13 3.6E-18 107.3 2.8 70 77-149 39-111 (292)
200 3v4m_A Splicing factor U2AF 65 99.4 1.8E-13 6.2E-18 92.2 3.1 70 78-149 4-90 (105)
201 1fje_B Nucleolin RBD12, protei 99.4 5E-14 1.7E-18 101.1 -0.0 70 77-149 11-84 (175)
202 1jmt_A Splicing factor U2AF 35 99.4 4.8E-14 1.6E-18 94.8 -0.8 64 84-149 20-99 (104)
203 3ue2_A Poly(U)-binding-splicin 99.3 1.2E-12 4.2E-17 89.9 4.8 70 78-149 19-102 (118)
204 3tht_A Alkylated DNA repair pr 99.3 7E-13 2.4E-17 106.3 3.7 64 77-143 16-81 (345)
205 2d9o_A DNAJ (HSP40) homolog, s 99.3 1.5E-12 5.2E-17 87.0 3.6 57 89-149 27-83 (100)
206 3s6e_A RNA-binding protein 39; 99.3 2.1E-12 7.3E-17 88.2 3.2 69 79-149 7-86 (114)
207 1owx_A Lupus LA protein, SS-B, 99.2 7.5E-12 2.6E-16 86.4 4.0 70 78-148 17-88 (121)
208 3dxb_A Thioredoxin N-terminall 98.7 6E-09 2.1E-13 77.8 4.1 57 91-149 141-206 (222)
209 2dnr_A Synaptojanin-1; RRM dom 98.7 3.2E-09 1.1E-13 69.4 1.7 66 78-149 6-79 (91)
210 1ufw_A Synaptojanin 2; RNP dom 98.6 1.4E-08 5E-13 66.7 2.3 67 77-149 13-88 (95)
211 2l9w_A U4/U6 snRNA-associated- 98.4 5.9E-08 2E-12 65.4 1.7 71 76-149 18-93 (117)
212 3ctr_A Poly(A)-specific ribonu 97.8 6.2E-05 2.1E-09 49.6 6.1 54 80-137 7-60 (101)
213 1whv_A Poly(A)-specific ribonu 97.8 9.4E-05 3.2E-09 48.7 6.8 54 81-138 18-71 (100)
214 2dhx_A Poly (ADP-ribose) polym 97.2 0.00091 3.1E-08 44.3 6.1 53 79-134 8-65 (104)
215 3pq1_A Poly(A) RNA polymerase; 97.0 0.00012 4.3E-09 60.5 0.5 56 77-133 51-106 (464)
216 1wey_A Calcipressin 1; structu 96.9 0.00045 1.5E-08 45.9 2.6 68 79-149 5-77 (104)
217 1uw4_A UPF3X; nonsense mediate 96.8 0.0025 8.7E-08 41.3 5.6 64 80-145 2-72 (91)
218 1wwh_A Nucleoporin 35, nucleop 95.6 0.016 5.6E-07 39.3 4.5 63 78-145 23-85 (119)
219 2l08_A Regulator of nonsense t 95.0 0.022 7.4E-07 37.3 3.4 64 80-145 10-80 (97)
220 3d45_A Poly(A)-specific ribonu 94.0 0.07 2.4E-06 44.5 5.3 54 82-138 442-495 (507)
221 3p3d_A Nucleoporin 53; structu 93.3 0.045 1.5E-06 37.7 2.4 63 80-146 8-89 (132)
222 4f25_A Polyadenylate-binding p 86.1 0.22 7.6E-06 32.6 0.9 76 20-95 19-113 (115)
223 4e8u_A Putative uncharacterize 77.4 8.1 0.00028 27.5 6.5 50 80-129 13-75 (172)
224 1wfx_A Probable RNA 2'-phospho 76.1 0.78 2.7E-05 33.3 0.9 46 27-75 24-73 (186)
225 3htx_A HEN1; HEN1, small RNA m 72.4 0.63 2.2E-05 41.5 -0.5 73 4-77 111-204 (950)
226 2g0c_A ATP-dependent RNA helic 45.8 20 0.00069 21.1 3.1 56 91-149 13-70 (76)
227 3h7h_B Transcription elongatio 43.1 20 0.00068 23.3 2.9 26 112-137 47-72 (106)
228 3lpe_A Putative transcription 32.2 10 0.00034 23.9 0.1 25 114-138 48-72 (92)
229 2cqy_A Propionyl-COA carboxyla 27.5 42 0.0014 20.4 2.5 44 92-137 33-78 (108)
230 3fry_A Probable copper-exporti 27.4 71 0.0024 17.9 3.4 54 79-134 6-59 (73)
231 2yko_A LINE-1 ORF1P; RNA-bindi 24.2 1.8E+02 0.006 21.6 5.7 70 79-148 52-144 (233)
232 4a4j_A Pacszia, cation-transpo 22.2 1E+02 0.0036 16.6 4.2 58 80-138 4-61 (69)
233 1gcc_A Ethylene responsive ele 21.3 47 0.0016 19.2 1.7 21 116-136 26-46 (63)
234 1k8v_A Neuropeptide F; moniezi 20.6 51 0.0018 17.5 1.5 25 122-147 13-37 (40)
235 2od0_A Hypothetical protein VP 20.5 52 0.0018 20.8 1.9 21 91-111 4-24 (105)
No 1
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=100.00 E-value=7.2e-44 Score=265.91 Aligned_cols=144 Identities=22% Similarity=0.367 Sum_probs=132.4
Q ss_pred ccccccceeeccccccchhhhhhhcC-CCceeeeEEeechhhhhhhchhhhHHHHHHhhC--CCcccccccccccCCC--
Q psy1630 3 LTTYDLACVCCRENLANDAYLLSQMD-NDQYVPIWTVANFNQVKKLTKDIKLITEVLRES--PNVQVDEEGIKVRPNH-- 77 (149)
Q Consensus 3 ~i~~q~e~yfs~~Nl~~d~~l~~~~~-~~g~vpi~~~~~F~kvk~l~~d~~~i~~al~~S--~~lev~~d~~~vrr~~-- 77 (149)
.|++||||||||+||++|.||+++|+ ++|||||.++++|+||++|+.|.+.|..||+.| ..+++++++.+|||.+
T Consensus 15 ~i~~q~e~yfs~~nl~~D~fl~~~~~~~~g~V~l~~i~sF~r~k~l~~d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~ 94 (193)
T 2voo_A 15 KICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTDFNVIVEALSKSKAELMEISEDKTKIRRSPSK 94 (193)
T ss_dssp HHHHHHHHHTSTTTGGGCHHHHHHHHHTTTCEEHHHHTTSHHHHHHCCCHHHHHHHHHTCSSCCEEECTTSSEEEECTTS
T ss_pred HHHHHhheecchhhcccCHHHHHHhcccCCcEEeHHHhhhhHHHHhcCCHHHHHHHHhhcccceEEEecccceEEecccC
Confidence 58899999999999999999999998 799999999999999999999999999999999 8999999999998763
Q ss_pred -------------ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee----eecCeeEEEEeccHHHHHHHHHHHHHh
Q psy1630 78 -------------KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF----AHNNSWYITFENDEDAQKAYRYLREDV 140 (149)
Q Consensus 78 -------------~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~----~~kg~afVeF~~~e~A~~Ai~~l~~~~ 140 (149)
+.++|||+|||+++|+++|+++|++||.|..+++.+ .++|||||+|+++++|++|++.++
T Consensus 95 p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~--- 171 (193)
T 2voo_A 95 PLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG--- 171 (193)
T ss_dssp CCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT---
T ss_pred CCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC---
Confidence 147999999999999999999999999999988864 378999999999999999997653
Q ss_pred hhhcCccCC
Q psy1630 141 REFQNKESK 149 (149)
Q Consensus 141 ~~~~g~~ik 149 (149)
..++|++|+
T Consensus 172 ~~~~Gr~l~ 180 (193)
T 2voo_A 172 QKYKETDLL 180 (193)
T ss_dssp CEETTEECE
T ss_pred CeECCEEEE
Confidence 489999873
No 2
>2cqk_A C-MPL binding protein; LA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.46
Probab=99.97 E-value=1.4e-33 Score=189.11 Aligned_cols=79 Identities=61% Similarity=0.934 Sum_probs=75.2
Q ss_pred cccccccceeeccccccchhhhhhhcCCCceeeeEEeechhhhhhhchhhhHHHHHHhhCCCcccccccccccCCCcee
Q psy1630 2 YLTTYDLACVCCRENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKVRPNHKRC 80 (149)
Q Consensus 2 ~~i~~q~e~yfs~~Nl~~d~~l~~~~~~~g~vpi~~~~~F~kvk~l~~d~~~i~~al~~S~~lev~~d~~~vrr~~~~~ 80 (149)
..|++||||||||+||++|.||+++|+++|||||++|++|+|||+|+.|.+.|++||+.|+.|+|++|+.+|||+++.+
T Consensus 16 ~~I~~QvEyYFSd~NL~~D~fL~~~md~~G~Vpl~~iasF~r~k~lt~d~~~i~~al~~S~~levsedg~kVRr~~~~~ 94 (101)
T 2cqk_A 16 ECLKKQLEFCFSRENLSKDLYLISQMDSDQFIPIWTVANMEEIKKLTTDPDLILEVLRSSPMVQVDEKGEKVRPSHKRC 94 (101)
T ss_dssp HHHHHHHHHHTSHHHHHHCHHHHHHSCTTSCEEHHHHHHCHHHHHHCCCHHHHHHHHHHSSSEEECSSSSEEEECCSCC
T ss_pred HHHHHHHHhhcchhhhccCHHHHHhhhcCCCEEhHHHhCChHHHHHcCCHHHHHHHHHhCCcEEEcCCCCeeeeCCCCC
Confidence 3588999999999999999999999999999999999999999999999999999999999999999999999987643
No 3
>1s29_A LA protein; winged helix-turn-helix, autoantigen, RNA-binding, RNA binding protein; 1.60A {Trypanosoma brucei} SCOP: a.4.5.46
Probab=99.97 E-value=7.7e-33 Score=183.15 Aligned_cols=76 Identities=24% Similarity=0.420 Sum_probs=72.8
Q ss_pred cccccccceeeccccccchhhhhhhc--CCCceeeeEEeechhhhhhhchhhhHHHHHHhhCCCcccccccccccCCC
Q psy1630 2 YLTTYDLACVCCRENLANDAYLLSQM--DNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKVRPNH 77 (149)
Q Consensus 2 ~~i~~q~e~yfs~~Nl~~d~~l~~~~--~~~g~vpi~~~~~F~kvk~l~~d~~~i~~al~~S~~lev~~d~~~vrr~~ 77 (149)
..|++||||||||+||++|.||+++| +++|||||++|++|+|||+++.|.+.|.+||+.|+.|+|++||.+|||+.
T Consensus 12 ~~I~~QvEyYFSd~NL~~D~fL~~~m~~~~~G~Vpl~~i~sF~r~k~lt~d~~~i~~al~~S~~lev~edg~~VRR~~ 89 (92)
T 1s29_A 12 QKLQKQVEFYFSDVNVQRDIFLKGKMAENAEGFVSLETLLTFKRVNSVTTDVKEVVEAIRPSEKLVLSEDGLMVRRRD 89 (92)
T ss_dssp HHHHHHHHHHTSHHHHTTCHHHHHHHTTSTTCCEEHHHHTTSHHHHTTCSCHHHHHHHHTTCSSEEECTTSSEEEESS
T ss_pred HHHHHHHHhhcchhhhccCHHHHHHhccCCCCCEEhHHHhCChhHHHHcCCHHHHHHHHhhCCeEEEeCCCCEEeCCC
Confidence 35889999999999999999999999 68999999999999999999999999999999999999999999999875
No 4
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.75 E-value=5.2e-19 Score=118.13 Aligned_cols=70 Identities=20% Similarity=0.242 Sum_probs=63.6
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
..++|||+|||.++|+++|+++|++||.|..+.+.. .++|||||+|+++++|++|++.||| ..+.|++|+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng--~~~~gr~l~ 92 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNG--LRLQSKTIK 92 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTT--CEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCC--CEECCEEEE
Confidence 356899999999999999999999999998888753 3789999999999999999999999 799999874
No 5
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3e-19 Score=120.91 Aligned_cols=71 Identities=13% Similarity=0.090 Sum_probs=64.0
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
+.++|||+|||+++|+++|+++|++||.|..+.+.. .+|||||+|+++++|++|++.+++.+..+.||+|+
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~-~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK-GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc-CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 568999999999999999999999999999888765 48999999999999999999987644689999885
No 6
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.7e-18 Score=119.62 Aligned_cols=72 Identities=13% Similarity=0.079 Sum_probs=65.0
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.+.++|||+|||+++|+++|+++|++||.|..+.+.. .+|||||+|+++++|++|++.+++.+..+.|++|+
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~-~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK-GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEG-GGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 3568999999999999999999999999999988865 48999999999999999999999854679999884
No 7
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.1e-18 Score=117.65 Aligned_cols=72 Identities=17% Similarity=0.080 Sum_probs=64.2
Q ss_pred CceeEEEeecCCC-CCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 77 HKRCIVILREIPD-STPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 77 ~~~~tl~v~~lp~-~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.+.++|||+|||+ ++|+++|+++|++||.|..+.+.. .+|||||+|+++++|++|++.|++....+.||+|+
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILN-KINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR 85 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECS-SSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEc-CCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEE
Confidence 4678999999999 999999999999999998888754 57999999999999999999999854469999874
No 8
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.6e-18 Score=116.48 Aligned_cols=72 Identities=14% Similarity=0.110 Sum_probs=64.3
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.+.++|||+|||+++|+++|+++|++||.|..+.+.. .+|||||+|+++++|++|++.+++++..+.|++|+
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 84 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLK-GKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIY 84 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC-CCCEEEEEECCHHHHHHHHHHhccCCceECCcEEE
Confidence 4567999999999999999999999999998887755 48999999999999999999998765679999874
No 9
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=3.5e-18 Score=116.93 Aligned_cols=72 Identities=17% Similarity=0.071 Sum_probs=64.9
Q ss_pred CceeEEEeecCCCC-CcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 77 HKRCIVILREIPDS-TPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 77 ~~~~tl~v~~lp~~-~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.+.++|||+|||++ +|+++|+++|++||.|..+.+.+ .+|||||+|+++++|++|++.|++....+.||+|+
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR-MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET-TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec-CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 35789999999998 99999999999999999988853 68999999999999999999999864569999874
No 10
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=5.2e-18 Score=114.49 Aligned_cols=72 Identities=10% Similarity=0.080 Sum_probs=64.1
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.+.++|||+|||+++|+++|+++|++||.|..+.+.. .+|||||+|+++++|++|++.+++....+.|++|+
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~ 84 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP-FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAF 84 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC-CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 4567999999999999999999999999998887754 58999999999999999999999854459999874
No 11
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.73 E-value=1.6e-18 Score=116.34 Aligned_cols=72 Identities=11% Similarity=0.080 Sum_probs=63.1
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.+.++|||+|||.++|+++|+++|++||.|..+.+.. .+|+|||+|++.++|++|++.+++....+.||+|+
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~-~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~ 90 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP-KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAF 90 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc-CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEE
Confidence 3567999999999999999999999999998887753 68999999999999999999999842247899873
No 12
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.73 E-value=2.8e-18 Score=116.72 Aligned_cols=71 Identities=8% Similarity=0.009 Sum_probs=64.5
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.+.++|||+|||+++|+++|+++|++||.|..+.+.. .++|||||+|+++++|++|++.||+ ..+.|++|+
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng--~~~~gr~i~ 79 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHL--TSVMGNIIH 79 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT--CEETTEECE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCC--CEECCeEEE
Confidence 3567999999999999999999999999999888753 3789999999999999999999999 799999874
No 13
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.72 E-value=3.9e-18 Score=113.34 Aligned_cols=72 Identities=17% Similarity=0.129 Sum_probs=60.0
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCC--ceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHh--hhhcCccC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCP--RFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDV--REFQNKES 148 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v--~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~--~~~~g~~i 148 (149)
.-.||||+|||+++|+++|+++|++||.+ ..|++.+ .++|||||+|+++++|++|++.||+.. ..++||+|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 45699999999999999999999999964 4555533 378999999999999999999999831 13789887
Q ss_pred C
Q psy1630 149 K 149 (149)
Q Consensus 149 k 149 (149)
+
T Consensus 88 ~ 88 (95)
T 2lkz_A 88 G 88 (95)
T ss_dssp E
T ss_pred E
Confidence 3
No 14
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.5e-17 Score=107.14 Aligned_cols=70 Identities=16% Similarity=0.131 Sum_probs=63.7
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
+.++|||+|||+++++++|+++|++||.|..+.+.. .++|||||+|+++++|++|++.||+ ..++|+.|+
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g~~~~ 78 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKA--SGVQAQMAK 78 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHH--HTCCEESCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcC--CeEeeEEEe
Confidence 467999999999999999999999999998888753 3589999999999999999999999 699999875
No 15
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.72 E-value=3.3e-18 Score=116.87 Aligned_cols=69 Identities=12% Similarity=0.140 Sum_probs=62.6
Q ss_pred eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee---eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF---AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~---~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
..+|||+|||+++|+++|+++|++||.|..+++.. .++|||||+|+++++|++|++.|++ ..++|++|+
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~--~~~~g~~i~ 76 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG--MLLNDRKVF 76 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTT--CEETTEECE
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCC--CEECCEEEE
Confidence 35799999999999999999999999998888754 3689999999999999999999999 799999874
No 16
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.71 E-value=3.9e-18 Score=111.47 Aligned_cols=68 Identities=10% Similarity=0.028 Sum_probs=59.5
Q ss_pred eEEEeecCCCCCcHHHHHhhhCCCC--CCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 80 CIVILREIPDSTPLEEIRGLFSGKS--CPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 80 ~tl~v~~lp~~~t~~~l~~~F~~~G--~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.+|||+|||+++|+++|+++|++|| .|..+++.. .++|||||+|+++++|++|++.||| ..++|++|+
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g--~~~~gr~i~ 76 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPK--RELHGQNPV 76 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGG--SCSSSCCCE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCC--CeeCCEEEE
Confidence 5899999999999999999999999 888877743 3789999999999999999999999 799999874
No 17
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.71 E-value=5.6e-18 Score=109.02 Aligned_cols=71 Identities=15% Similarity=0.196 Sum_probs=64.1
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.+.++|||+|||+++++++|+++|++||.|..+.+.. .++|+|||+|+++++|++|++.|++ ..+.|++|+
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g~~l~ 80 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNE--SELFGRTIR 80 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTT--CEETTEECE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCC--CEECCcEEE
Confidence 3567999999999999999999999999998888744 3799999999999999999999999 799999874
No 18
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.70 E-value=2.3e-18 Score=112.83 Aligned_cols=68 Identities=13% Similarity=0.070 Sum_probs=62.9
Q ss_pred eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
...|+|+||++.+|+++|+++|++||+|..+++.. ++|||||||.++++|++|++.||+ ..+.||+|+
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-~kGfaFVey~~~~eA~~Ai~~Ln~--~~l~gr~I~ 74 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-NQGIALCKYTTREEANKAQMALNN--CVLANTTIF 74 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHTT--EEETTEEEE
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-CCcEEEEEECCHHHHHHHHHHhcC--CEECCcEEE
Confidence 34699999999999999999999999999888755 899999999999999999999999 799999884
No 19
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4.4e-18 Score=114.54 Aligned_cols=70 Identities=19% Similarity=0.283 Sum_probs=63.0
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.+.++|||+|||+++|+++|+++|++||.|..+++.. .++|||||+|+++++|++|++ +++ ..++|++|+
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~--~~~~gr~l~ 82 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPG--QKYKETDLL 82 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSC--CCCTTTTCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCC--CEECCEEEE
Confidence 4568999999999999999999999999999888864 378999999999999999998 776 799999873
No 20
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.70 E-value=4.5e-18 Score=109.04 Aligned_cols=68 Identities=9% Similarity=0.118 Sum_probs=61.9
Q ss_pred eEEEeecCCCCC------cHHHHHhhhCCCCCCceeeeee---eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCc-cCC
Q psy1630 80 CIVILREIPDST------PLEEIRGLFSGKSCPRFISCEF---AHNNSWYITFENDEDAQKAYRYLREDVREFQNK-ESK 149 (149)
Q Consensus 80 ~tl~v~~lp~~~------t~~~l~~~F~~~G~v~~v~~~~---~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~-~ik 149 (149)
++|||+|||.++ |+++|+++|++||.|..+.+.. .++|||||+|+++++|++|++.||| ..+.|+ +|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng--~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADG--YKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSS--CCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcC--cccCCceeEE
Confidence 689999999999 7899999999999988887753 4789999999999999999999999 799999 875
No 21
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.70 E-value=1e-17 Score=108.27 Aligned_cols=71 Identities=11% Similarity=0.093 Sum_probs=63.1
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeee-----ecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFA-----HNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~-----~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.+.++|||+|||.++|+++|+++|++||.|..+.+..+ ++|||||+|+++++|++|++.|++ ..++|++|+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~~g~~l~ 79 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGG--QWLGGRQIR 79 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT--CEETTEECE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCC--CEECCeEEE
Confidence 45689999999999999999999999999988887542 689999999999999999999998 789999874
No 22
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.70 E-value=1.3e-17 Score=107.87 Aligned_cols=70 Identities=20% Similarity=0.303 Sum_probs=63.0
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----e-ecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----A-HNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~-~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
+.++|||+|||.++|+++|+++|++||.|..+.+.. . ++|+|||+|+++++|++|++.|+| ..++|++|+
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g~~l~ 78 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDG--GQIDGQEIT 78 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTT--CEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCC--CeECCeEEE
Confidence 357899999999999999999999999998887743 2 799999999999999999999999 799999874
No 23
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.70 E-value=4.8e-18 Score=116.01 Aligned_cols=70 Identities=19% Similarity=0.305 Sum_probs=64.1
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCC-CCceeeee-eeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKS-CPRFISCE-FAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G-~v~~v~~~-~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
..++|||+|||+++|+++|+++|++|| .|..+.+. ..++|||||+|+++++|++|++.||| ..++|++|+
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng--~~l~Gr~i~ 98 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNN--IEFRGSVIT 98 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTT--EEETTEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCC--CEECCeEEE
Confidence 457899999999999999999999999 89988874 45899999999999999999999999 799999874
No 24
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.69 E-value=1.5e-17 Score=110.52 Aligned_cols=68 Identities=18% Similarity=0.141 Sum_probs=63.2
Q ss_pred eEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 80 CIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 80 ~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
++|||+|||.++|+++|+++|++||.|..+.+..+++|||||+|+++++|++|++.|++ ..+.|++|+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g~~l~ 68 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDG--KVICGSRVR 68 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHH--SCSSSCCCE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCC--CeECCcEEE
Confidence 48999999999999999999999999998888666899999999999999999999999 689999874
No 25
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.69 E-value=2.1e-18 Score=113.37 Aligned_cols=69 Identities=17% Similarity=0.266 Sum_probs=59.9
Q ss_pred eEEEeecCCCCCcHHHHHhhhCCCC-CCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 80 CIVILREIPDSTPLEEIRGLFSGKS-CPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 80 ~tl~v~~lp~~~t~~~l~~~F~~~G-~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
++|||+|||.++|+++|+++|++|| .|..+++.. .++|||||+|+++++|++|++.+++. ..++|++|+
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~-~~~~gr~i~ 76 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHS-LNILGQKVS 76 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTE-EEETTEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCC-eEECCEEEE
Confidence 5899999999999999999999999 788887743 47899999999999999999877542 578998873
No 26
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=2.3e-17 Score=112.09 Aligned_cols=69 Identities=19% Similarity=0.227 Sum_probs=63.4
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
..++|||+|||.++|+++|+++|++||.|..+.+.. .+|||||+|+++++|++|++.||+ ..+.|++|+
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~-~~g~afV~f~~~~~A~~Ai~~l~g--~~~~g~~l~ 77 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE-GGITAIVEFLEPLEARKAFRHLAY--SKFHHVPLY 77 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS-SSSCEEEEESCHHHHHHHHHHHTT--CBSSSSBCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-CCCEEEEEeCCHHHHHHHHHHhCC--CEECCeEEE
Confidence 468999999999999999999999999988877754 789999999999999999999999 799999874
No 27
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.68 E-value=2.8e-17 Score=105.24 Aligned_cols=68 Identities=12% Similarity=0.209 Sum_probs=61.9
Q ss_pred eEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 80 CIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 80 ~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.+|||+|||.++|+++|+++|++||.|..+.+.. .++|+|||+|+++++|++|++.|+| ..+.|++|+
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g--~~~~g~~l~ 74 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQG--QDLNGRPLR 74 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTT--CEETTEECE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcC--CeeCCcEEE
Confidence 5899999999999999999999999998887753 3589999999999999999999998 689999874
No 28
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.68 E-value=1.1e-17 Score=111.60 Aligned_cols=69 Identities=10% Similarity=0.132 Sum_probs=63.0
Q ss_pred eeEEEeecCCC------CCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcC-c
Q psy1630 79 RCIVILREIPD------STPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQN-K 146 (149)
Q Consensus 79 ~~tl~v~~lp~------~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g-~ 146 (149)
.++|||+|||. ++++++|+++|++||.|..+.+.. .++|||||+|+++++|++|++.||| ..+.| +
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng--~~~~g~r 83 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHG--KRLDLKH 83 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTT--CBSSSSC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCC--cccCCCe
Confidence 57899999999 999999999999999999888753 4789999999999999999999999 79999 8
Q ss_pred cCC
Q psy1630 147 ESK 149 (149)
Q Consensus 147 ~ik 149 (149)
+|+
T Consensus 84 ~l~ 86 (100)
T 3ns6_A 84 RLF 86 (100)
T ss_dssp BCE
T ss_pred EEE
Confidence 874
No 29
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=5.4e-17 Score=107.58 Aligned_cols=70 Identities=19% Similarity=0.194 Sum_probs=63.8
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.+.++|||+|||.++|+++|+++|++||.|..+.+.. .+|||||+|+++++|++|++.|++ ..+.|++|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~-~kg~afV~f~~~~~a~~a~~~l~g--~~~~g~~l~ 82 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK-DKGFGFIRLETRTLAEIAKVELDN--MPLRGKQLR 82 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEET-TTTEEEEECSSSHHHHHHHHHHTT--CCBTTBCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEec-CCCEEEEEECCHHHHHHHHHHhCC--CEeCCceEE
Confidence 3567999999999999999999999999999888764 589999999999999999999999 689999874
No 30
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=3.1e-17 Score=109.42 Aligned_cols=72 Identities=14% Similarity=0.158 Sum_probs=64.7
Q ss_pred CCceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 76 NHKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 76 ~~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
..+.++|||+|||.++|+++|+++|++||.|..+.+.. .++|||||+|+++++|++|++.|++ ..+.|++|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~~g~~l~ 88 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSG--FGYDHLILN 88 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTT--CEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCC--CeeCCcEEE
Confidence 35678999999999999999999999999998888753 3689999999999999999999998 689999874
No 31
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.68 E-value=8.6e-17 Score=106.21 Aligned_cols=68 Identities=16% Similarity=0.179 Sum_probs=62.3
Q ss_pred CceeEEEeecCCC-CCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 77 HKRCIVILREIPD-STPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 77 ~~~~tl~v~~lp~-~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.+.++|||+|||+ ++|+++|+++|++||.|..+.+ ++|||||+|+++++|++|++.|++ ..+.|++|+
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~~l~g--~~~~g~~l~ 76 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI---KNAFGFIQFDNPQSVRDAIECESQ--EMNFGKKLI 76 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEE---ETTEEEEEESCHHHHHHHHHHHTC--SSCBTTTBC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE---eCCEEEEEECCHHHHHHHHHHcCC--CeeCCcEEE
Confidence 4578999999998 9999999999999999998877 589999999999999999999998 699999875
No 32
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=5e-17 Score=106.65 Aligned_cols=70 Identities=17% Similarity=0.157 Sum_probs=63.5
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
+.++|||+|||.++|+++|+++|++||.|..+.+.. .++|||||+|+++++|++|++.|++ ..+.|++|+
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g~~l~ 78 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNG--FELAGRPMR 78 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTT--CCSSSSCCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCC--CeeCCcEEE
Confidence 467999999999999999999999999988887754 2689999999999999999999999 799999874
No 33
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.68 E-value=5.2e-17 Score=107.67 Aligned_cols=71 Identities=13% Similarity=0.253 Sum_probs=63.8
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCCCce--------eeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhh
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRF--------ISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREF 143 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~--------v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~ 143 (149)
.+.++|||+|||.++|+++|+++|++||.|.. +.+.. .++|||||+|++.++|++|++.|+| ..+
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g--~~~ 88 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDG--KEF 88 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTT--CBS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCC--CEe
Confidence 45689999999999999999999999999987 77643 3689999999999999999999999 799
Q ss_pred cCccCC
Q psy1630 144 QNKESK 149 (149)
Q Consensus 144 ~g~~ik 149 (149)
+|++|+
T Consensus 89 ~g~~l~ 94 (99)
T 2la6_A 89 SGNPIK 94 (99)
T ss_dssp SSSBCE
T ss_pred CCcEEE
Confidence 999874
No 34
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=4.8e-17 Score=106.07 Aligned_cols=68 Identities=18% Similarity=0.226 Sum_probs=62.2
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.+.++|||+|||.++|+++|+++|++||.|..+.+. +|||||+|+++++|++|++.+++ ..+.|++|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~---~g~afV~f~~~~~A~~A~~~l~g--~~~~g~~l~ 73 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII---KNYGFVHIEDKTAAEDAIRNLHH--YKLHGVNIN 73 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE---TTEEEEEESSHHHHHHHHHHHTT--CBCSSCBCE
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhcC--CccCCcEEE
Confidence 356899999999999999999999999998887764 89999999999999999999998 789999874
No 35
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.67 E-value=5.4e-17 Score=105.92 Aligned_cols=71 Identities=15% Similarity=0.303 Sum_probs=64.3
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee---eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF---AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~---~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.+.++|||+|||.++|+++|+++|++||.|..+.+.. .++|||||+|+++++|++|++.|++ ..++|++|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g--~~~~g~~l~ 79 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG--MKLSGREID 79 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTT--CCBTTBCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCC--CEECCcEEE
Confidence 4568999999999999999999999999998887754 3689999999999999999999999 689999875
No 36
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.67 E-value=7.1e-17 Score=109.17 Aligned_cols=71 Identities=20% Similarity=0.194 Sum_probs=64.5
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.+.++|||+|||.++|+++|+++|++||.|..+.+.. .++|||||+|+++++|++|++.++| ..+.|++|+
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g--~~i~g~~l~ 99 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNG--FELAGRPMK 99 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTT--CCSSSSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCC--CEECCEEEE
Confidence 4678999999999999999999999999998888753 3689999999999999999999999 799999874
No 37
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.67 E-value=3e-17 Score=107.78 Aligned_cols=71 Identities=11% Similarity=0.073 Sum_probs=64.2
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.+.++|||+|||+++++++|+++|++||.|..+.+.. .++|+|||+|+++++|++|++.|++ ..+.|++|+
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g~~l~ 88 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNG--IRLYGRPIN 88 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTT--CEETTEECE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCC--CEECCCEEE
Confidence 4568999999999999999999999999998888754 2689999999999999999999999 689999874
No 38
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.67 E-value=4.4e-17 Score=106.92 Aligned_cols=70 Identities=19% Similarity=0.297 Sum_probs=62.0
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
..++|||+|||+++|+++|+++|++||.|..+.+.. .++|||||+|+++++|++|++.|++ ..+.|++|+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g--~~~~gr~l~ 88 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLND--RPIGSRKVK 88 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTT--CEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCC--CeECCcEEE
Confidence 458999999999999999999999999987665533 3789999999999999999999999 799999874
No 39
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=2.2e-17 Score=109.11 Aligned_cols=70 Identities=17% Similarity=0.237 Sum_probs=62.9
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee--------eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF--------AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
+.++|||+|||+++|+++|+++|++||.|..+.+.. .++|||||+|+++++|++|++.|++ ..+.|++|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g~~l~ 81 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQG--HTVDGHKLE 81 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTT--CEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCC--CeeCCeEEE
Confidence 457899999999999999999999999998888753 3579999999999999999999998 689998873
No 40
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.67 E-value=5.2e-17 Score=107.91 Aligned_cols=69 Identities=14% Similarity=0.197 Sum_probs=63.7
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
..++|||+|||.++|+++|+++|++||.|..+.+. .++|||||+|++.++|++|+..|++ ..++|++|+
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~-~~~g~afV~f~~~~~A~~Ai~~l~g--~~~~g~~l~ 94 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY-PEKGCCFIKYDTHEQAAVCIVALAN--FPFQGRNLR 94 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE-TTTTEEEEECSSHHHHHHHHHHHTT--CEETTEECC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe-cCCCEEEEEECCHHHHHHHHHHhCC--CeECCeEEE
Confidence 45799999999999999999999999999988876 4799999999999999999999998 799999875
No 41
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.67 E-value=3.3e-17 Score=108.04 Aligned_cols=69 Identities=23% Similarity=0.223 Sum_probs=62.5
Q ss_pred eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.++|||+|||.++++++|+++|++||.|..+.+.. .++|||||+|++.++|++|++.|+| ..++|++|+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g--~~~~g~~l~ 75 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNG--YQLGSRFLK 75 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTT--CEETTEECE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCC--CeECCeEEE
Confidence 47899999999999999999999999988887743 3589999999999999999999999 799998874
No 42
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=5.3e-17 Score=109.83 Aligned_cols=71 Identities=18% Similarity=0.207 Sum_probs=64.3
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee---eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF---AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~---~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.+.++|||+|||.++|+++|+++|++||.|..+.+.. .++|||||+|++.++|++|++.|+| ..++|++|+
T Consensus 27 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g--~~~~g~~l~ 100 (109)
T 2err_A 27 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHG--TVVEGRKIE 100 (109)
T ss_dssp TCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTT--CEETTEECE
T ss_pred CCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCC--CEECCEEEE
Confidence 3568999999999999999999999999999888753 3689999999999999999999999 689999874
No 43
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3e-17 Score=109.16 Aligned_cols=71 Identities=14% Similarity=0.161 Sum_probs=64.2
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.+.++|||+|||.++|+++|+++|++||.|..+.+.. .++|||||+|+++++|++|++.|++ ..+.|++|+
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~~g~~l~ 85 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNG--KSVDGRQIR 85 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTT--CCTTSCCCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCC--CEECCeEEE
Confidence 3567999999999999999999999999999888854 2689999999999999999999999 689999874
No 44
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=5.6e-17 Score=107.60 Aligned_cols=71 Identities=14% Similarity=0.192 Sum_probs=63.9
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.+.++|||+|||.++|+++|+++|++||.|..+.+.. .++|||||+|+++++|++|++.|++ ..++|++|+
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g~~l~ 89 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDG--MTIKENIIK 89 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTT--EESSSCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCC--CEECCEEEE
Confidence 4568999999999999999999999999988888754 3679999999999999999999998 799998874
No 45
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=5e-17 Score=108.39 Aligned_cols=71 Identities=15% Similarity=0.173 Sum_probs=63.8
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.+.++|||+|||.++|+++|+++|++||.|..+.+.. .++|||||+|+++++|++|++.|++ ..+.|++|+
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~~g~~l~ 86 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDG--AELDGRELR 86 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSS--CCBTTBCCE
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCC--CEECCcEEE
Confidence 3568999999999999999999999999988887743 3689999999999999999999999 689999874
No 46
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=5.2e-17 Score=108.28 Aligned_cols=71 Identities=17% Similarity=0.151 Sum_probs=64.3
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee---eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF---AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~---~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.+.++|||+|||+++|+++|+++|++||.|..+.+.. .++|||||+|++.++|++|++.|++ ..+.|++|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g--~~~~g~~l~ 86 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG--RIVATKPLY 86 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTT--CBSSSSBCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCC--CEeCCcEEE
Confidence 3568999999999999999999999999988888754 3789999999999999999999999 689999874
No 47
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.5e-17 Score=109.60 Aligned_cols=71 Identities=15% Similarity=0.196 Sum_probs=63.9
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.+.++|||+|||.++|+++|+++|++||.|..+.+.. .++|||||+|+++++|++|++.|++ ..+.|++|+
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~~g~~l~ 85 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNE--SELFGRTIR 85 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTT--EEETTEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCC--CEECCcEEE
Confidence 3567899999999999999999999999999888743 3789999999999999999999998 789998863
No 48
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=3.2e-17 Score=108.51 Aligned_cols=70 Identities=20% Similarity=0.234 Sum_probs=63.2
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
+.++|||+|||.++|+++|+++|++||.|..+.+.. .++|||||+|+++++|++|++.|++ ..+.|++|+
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g~~l~ 81 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDG--QVFQGRMLH 81 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTT--EESSSCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCC--CEECCcEEE
Confidence 568999999999999999999999999988887743 3689999999999999999999998 799998863
No 49
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=6.1e-17 Score=108.46 Aligned_cols=71 Identities=23% Similarity=0.324 Sum_probs=63.7
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeee------ecCeeEEEEeccHHHHHHHHHH-HHHhhhhcCccCC
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFA------HNNSWYITFENDEDAQKAYRYL-REDVREFQNKESK 149 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~------~kg~afVeF~~~e~A~~Ai~~l-~~~~~~~~g~~ik 149 (149)
.+.++|||+|||.++|+++|+++|++||.|..+.+..+ ++|||||+|+++++|++|++.| ++ ..+.|++|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~--~~~~g~~l~ 90 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHS--THLYGRRLV 90 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTC--CBSSSCBCE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccC--CeECCCEEE
Confidence 45689999999999999999999999999988887443 5899999999999999999999 77 799999874
No 50
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.5e-17 Score=108.33 Aligned_cols=70 Identities=9% Similarity=0.033 Sum_probs=63.0
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCcee-eeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFI-SCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v-~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
+.++|||+|||.++|+++|+++|++||.|..+ .+.. .++|||||+|+++++|++|++.|++ ..+.|++|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g--~~~~g~~l~ 79 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNG--QYLCNRPIT 79 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTT--CEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCC--CEECCEEEE
Confidence 46799999999999999999999999999887 7744 2689999999999999999999998 689999874
No 51
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=6e-17 Score=108.42 Aligned_cols=71 Identities=14% Similarity=0.180 Sum_probs=64.3
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.+.++|||+|||.++|+++|+++|++||.|..+.+.. .++|||||+|+++++|++|++.|++ ..+.|++|+
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g~~l~ 96 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNG--QDLMGQPIS 96 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTT--CBSSSSBCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcC--CEECCcEEE
Confidence 4578999999999999999999999999998888753 3689999999999999999999999 799999874
No 52
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=5.6e-17 Score=107.11 Aligned_cols=70 Identities=17% Similarity=0.176 Sum_probs=63.1
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhc--CccCC
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQ--NKESK 149 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~--g~~ik 149 (149)
.+.++|||+|||.++|+++|+++|++||.|..+.+... +|||||+|+++++|++|++.|++ ..+. |++|+
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-~g~afV~f~~~~~A~~A~~~l~g--~~~~~~g~~l~ 86 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-DSFAYIQYESLDAAQAACAKMRG--FPLGGPDRRLR 86 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-SCCEEEEESSHHHHHHHHHHHTT--CBCSSSSCBCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-CCEEEEEECCHHHHHHHHHHHCC--CEeCCCCcEEE
Confidence 45689999999999999999999999999888877653 89999999999999999999998 6898 88873
No 53
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=5.1e-17 Score=106.52 Aligned_cols=71 Identities=18% Similarity=0.225 Sum_probs=63.9
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.+.++|||+|||.++|+++|+++|++||.|..+.+.. .++|+|||+|+++++|++|++.|++ ..+.|++|+
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~~g~~l~ 88 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANG--MELDGRRIR 88 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTT--EEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCC--CEECCEEEE
Confidence 4568999999999999999999999999998888753 3689999999999999999999998 799999874
No 54
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.1e-17 Score=108.42 Aligned_cols=71 Identities=15% Similarity=0.070 Sum_probs=63.6
Q ss_pred CceeEEEeecCCCCCcHHHHH----hhhCCCCCCceeeeeee--ecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 77 HKRCIVILREIPDSTPLEEIR----GLFSGKSCPRFISCEFA--HNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~----~~F~~~G~v~~v~~~~~--~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.+.++|||+|||+++++++|+ ++|++||.|..+.+..+ .+|||||+|+++++|++|++.||+ ..+.|++|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g--~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHR--YKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTT--EEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCC--CEECCeEEE
Confidence 356799999999999999999 99999999988887532 389999999999999999999999 799999874
No 55
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=7.2e-17 Score=106.86 Aligned_cols=70 Identities=17% Similarity=0.265 Sum_probs=62.4
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.+.++|||+|||.++|+++|+++|++||.|..+.+.. .++|||||+|+++++|++|++ +++ ..+.|++|+
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~--~~~~g~~l~ 82 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHF--HDIMGKKVE 82 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCC--CBSSSCBCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCC--CEECCeEEE
Confidence 3567999999999999999999999999998888743 268999999999999999998 887 799999874
No 56
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=6.9e-17 Score=107.68 Aligned_cols=71 Identities=18% Similarity=0.196 Sum_probs=63.9
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeee---ecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFA---HNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~---~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.+.++|||+|||.++|+++|+++|++||.|..+.+..+ ++|||||+|+++++|++|++.|++ ..++|++|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g~~l~ 86 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHG--TVVEGRKIE 86 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTT--CEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCC--CEECCEEEE
Confidence 35689999999999999999999999999988887542 589999999999999999999998 689999874
No 57
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.66 E-value=7.4e-17 Score=108.73 Aligned_cols=71 Identities=15% Similarity=0.178 Sum_probs=64.1
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.+.++|||+|||.++|+++|+++|++||.|..+.+.. .++|||||+|+++++|++|++.|+| ..+.|++|+
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g--~~~~g~~l~ 99 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNG--AEIMGQTIQ 99 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTT--CEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCC--CEECCcEEE
Confidence 4678999999999999999999999999998888743 3589999999999999999999999 699999874
No 58
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=7.6e-17 Score=108.62 Aligned_cols=71 Identities=15% Similarity=0.251 Sum_probs=63.8
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee--eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF--AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~--~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.+.++|||+|||.++|+++|+++|++||.|..+.+.. .++|||||+|+++++|++|++.|++ ..+.|++|+
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~~g~~l~ 92 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG--YDYDGYRLR 92 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTT--CEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCC--CEECCeEEE
Confidence 3568999999999999999999999999988887743 3689999999999999999999998 689998874
No 59
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=4.4e-17 Score=104.85 Aligned_cols=70 Identities=13% Similarity=0.120 Sum_probs=63.1
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHH-HHHhhhhcCccCC
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYL-REDVREFQNKESK 149 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l-~~~~~~~~g~~ik 149 (149)
.+.++|||+|||.++|+++|+++|++||.|..+.+.. .+|||||+|+++++|++|++.| ++ ..+.|++|+
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~-~kg~afV~f~~~~~A~~a~~~l~~~--~~~~g~~l~ 80 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ-RQQCAFIQFATRQAAEVAAEKSFNK--LIVNGRRLN 80 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG-GGTEEEEEESSHHHHHHHHHTTTTT--CEETTEECC
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC-CCCEEEEEECCHHHHHHHHHHhcCC--eeECCCEEE
Confidence 3467899999999999999999999999988887764 6899999999999999999988 77 789999875
No 60
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.66 E-value=8.6e-17 Score=108.82 Aligned_cols=68 Identities=19% Similarity=0.257 Sum_probs=62.6
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.+.++|||+|||.++|+++|+++|++||.|..+.+. +|||||+|++.++|++|++.|+| ..++|++|+
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~---kg~afV~f~~~~~A~~Ai~~l~g--~~~~g~~l~ 96 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL---NGFAFVEFEEAESAAKAIEEVHG--KSFANQPLE 96 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE---TTEEEEECSSHHHHHHHHHHHTT--CEETTEECE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEECCHHHHHHHHHHcCC--CEECCeEEE
Confidence 356899999999999999999999999999888775 89999999999999999999999 689999873
No 61
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=3.6e-17 Score=110.91 Aligned_cols=71 Identities=15% Similarity=0.174 Sum_probs=63.0
Q ss_pred CceeEEEeecCCCCCcHHHHH---hhhCCCCCCceeeeee--------eecCeeEEEEeccHHHHHHHHHHHHHhhhhcC
Q psy1630 77 HKRCIVILREIPDSTPLEEIR---GLFSGKSCPRFISCEF--------AHNNSWYITFENDEDAQKAYRYLREDVREFQN 145 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~---~~F~~~G~v~~v~~~~--------~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g 145 (149)
...++|||+|||+++++++|+ ++|++||.|..+.+.. .++|||||+|+++++|++|++.||+ ..++|
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng--~~~~g 90 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNN--VVVDG 90 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTT--EEETT
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCC--CEECC
Confidence 356789999999999999999 9999999998888753 2458999999999999999999999 68999
Q ss_pred ccCC
Q psy1630 146 KESK 149 (149)
Q Consensus 146 ~~ik 149 (149)
++|+
T Consensus 91 r~l~ 94 (111)
T 2cpi_A 91 RTLK 94 (111)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9874
No 62
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.65 E-value=1.5e-16 Score=107.44 Aligned_cols=67 Identities=13% Similarity=0.160 Sum_probs=62.4
Q ss_pred ceeEEEeecCCCC-CcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 78 KRCIVILREIPDS-TPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 78 ~~~tl~v~~lp~~-~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
..++|||+|||++ +|+++|+++|++||.|..+.+ ++|||||+|+++++|++|++.|++ ..+.|++|+
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~~l~g--~~~~g~~l~ 93 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV---HKGYAFVQYSNERHARAAVLGENG--RVLAGQTLD 93 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE---ETTEEEEECSSSHHHHHHHHHHTT--CEETTEECC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE---eCCEEEEEECCHHHHHHHHHHcCC--CEECCeEEE
Confidence 4579999999999 999999999999999998877 799999999999999999999999 789999875
No 63
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.65 E-value=9.8e-17 Score=108.95 Aligned_cols=71 Identities=21% Similarity=0.235 Sum_probs=64.0
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee--eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF--AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~--~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.+.++|||+|||.++|+++|+++|++||.|..+.+.. .++|||||+|++.++|++|++.|+| ..+.|++|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~~g~~l~ 78 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSG--FNVSNRYLV 78 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTT--CBSSSCBCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCC--CEECCeEEE
Confidence 3467999999999999999999999999998888754 3689999999999999999999999 799999874
No 64
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=7.5e-17 Score=106.60 Aligned_cols=69 Identities=9% Similarity=0.172 Sum_probs=61.4
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeee-eeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCE-FAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~-~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
..++|||+|||+++|+++|+++|++||.|. +.+. ..++|||||+|+++++|++|++.||+ ..+.|++|+
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g~~l~ 87 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQG--LRLGTDTLR 87 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTT--CCSSSSCCE
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCC--CEECCcEEE
Confidence 467999999999999999999999999986 4443 35799999999999999999999999 799999874
No 65
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=3.5e-17 Score=107.22 Aligned_cols=71 Identities=15% Similarity=0.202 Sum_probs=63.5
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.+.++|||+|||.++++++|+++|++||.|..+.+.. .++|+|||+|+++++|++|++.|++ ..+.|++|+
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~~g~~l~ 89 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINN--KQLFGRVIK 89 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTT--EEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCC--CeeCCcEEE
Confidence 3567899999999999999999999999988887743 3689999999999999999999998 799999873
No 66
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=5.4e-17 Score=108.22 Aligned_cols=71 Identities=17% Similarity=0.149 Sum_probs=63.8
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee---eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF---AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~---~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.+.++|||+|||+++|+++|+++|++||.|..+.+.. ..+|||||+|+++++|++|++.|++ ..+.|++|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g~~l~ 86 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNG--RKILGKEVK 86 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTT--EEETTEEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCC--CCcCCCeEE
Confidence 4568999999999999999999999999998888754 2689999999999999999999998 689998873
No 67
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=1.6e-16 Score=104.00 Aligned_cols=68 Identities=22% Similarity=0.227 Sum_probs=61.8
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.+.++|||+|||.++|+++|+++|++||.|..+.+. ++||||+|+++++|++|++.|++ ..+.|++|+
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~---~~~afV~f~~~~~a~~A~~~l~g--~~~~g~~l~ 75 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV---KDYAFVHMERAEDAVEAIRGLDN--TEFQGKRMH 75 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC---SSEEEEEESCHHHHHHHHHHHTT--EEETTEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE---CCEEEEEECCHHHHHHHHHHhCC--CeeCCcEEE
Confidence 456899999999999999999999999999888774 67999999999999999999999 689998763
No 68
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.65 E-value=1.1e-16 Score=107.26 Aligned_cols=71 Identities=13% Similarity=0.165 Sum_probs=64.3
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.+.++|||+|||+.+|+++|+++|++||.|..+.+.. .++|+|||+|+++++|++|++.|++ ..+.|++|+
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g~~l~ 101 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNG--VPLDGRPMN 101 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTT--CEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCC--CEeCCcEEE
Confidence 4578999999999999999999999999998887754 3689999999999999999999999 799999874
No 69
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.65 E-value=1.4e-16 Score=109.80 Aligned_cols=71 Identities=14% Similarity=0.180 Sum_probs=64.2
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.+.++|||+|||.++|+++|+++|++||.|..+.+.. .++|||||+|+++++|++|++.|++ ..+.|++|+
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g~~l~ 95 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNG--QDLMGQPIS 95 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTT--CBSSSSBCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCC--CeeCCeEEE
Confidence 4578999999999999999999999999998887753 2589999999999999999999999 799999874
No 70
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=8.9e-17 Score=106.13 Aligned_cols=70 Identities=20% Similarity=0.301 Sum_probs=61.8
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
..++|||+|||+++|+++|+++|++||.|..+.+.. .++|||||+|+++++|++|++.|++ ..+.|++|+
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g--~~~~g~~l~ 88 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLND--RPIGSRKVK 88 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTT--CEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCC--CeeCCeEEE
Confidence 457899999999999999999999999987655432 3689999999999999999999998 699999874
No 71
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=8.9e-17 Score=107.40 Aligned_cols=71 Identities=14% Similarity=0.146 Sum_probs=63.7
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.+.++|||+|||.++|+++|+++|++||.|..+.+.. .++|||||+|+++++|++|++.|++ ..+.|++|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g~~l~ 88 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDM--IKLYGKPIR 88 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSS--CBCSSCBCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCC--CeECCeEEE
Confidence 3567999999999999999999999999988887743 3689999999999999999999998 689999874
No 72
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.65 E-value=9.1e-17 Score=109.58 Aligned_cols=70 Identities=14% Similarity=0.181 Sum_probs=63.6
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
+.++|||+|||.++|+++|+++|++||.|..+.+.. .++|||||+|++.++|++|++.||+ ..++|++|+
T Consensus 39 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g--~~~~g~~l~ 113 (118)
T 2khc_A 39 EGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNG--FQVGTKRLK 113 (118)
T ss_dssp CSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCC--CEETTEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCC--CEECCEEEE
Confidence 568999999999999999999999999988887743 3689999999999999999999998 789999885
No 73
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.65 E-value=6.5e-17 Score=110.44 Aligned_cols=67 Identities=16% Similarity=0.245 Sum_probs=60.2
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKES 148 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i 148 (149)
..++|||+|||+++|+++|+++|++||.|..+.+..+ |||||+|+++++|++|++.||+ .+++|++|
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g--~~~~gr~~ 81 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDN--TKFRSHEG 81 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT--SEEEEEESSHHHHHHHHHHHTT--CBCCCTTS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC--CEEEEEECCHHHHHHHHHHhCC--CEECCcEe
Confidence 3578999999999999999999999999888877544 9999999999999999999999 79999884
No 74
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.65 E-value=1.5e-16 Score=106.33 Aligned_cols=71 Identities=11% Similarity=0.091 Sum_probs=63.1
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeee----ecCeeEEEEeccHHHHHHHHHHHHHhhhhcC---ccCC
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFA----HNNSWYITFENDEDAQKAYRYLREDVREFQN---KESK 149 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~----~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g---~~ik 149 (149)
.+.++|||+|||.++|+++|+++|++||.|..+.+..+ ++|||||+|++.++|++|++.|++ ..+.| ++|+
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g--~~~~gg~~~~l~ 90 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHG--SQTMPGASSSLV 90 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSS--CCCCTTCSSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcC--CccCCCCCccEE
Confidence 45689999999999999999999999999888887542 589999999999999999999998 68887 7763
No 75
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.65 E-value=8.6e-17 Score=110.05 Aligned_cols=70 Identities=17% Similarity=0.192 Sum_probs=63.5
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
+.++|||+|||.++|+++|+++|++||.|..+.+.. .++|||||+|++.++|++|++.|++ ..+.|++|+
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g--~~~~g~~l~ 79 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNG--KSLHGKAIK 79 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSS--CBCSSSBCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCC--CEECCEEEE
Confidence 457999999999999999999999999999888754 2679999999999999999999998 799999874
No 76
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.65 E-value=4.7e-17 Score=105.48 Aligned_cols=68 Identities=18% Similarity=0.261 Sum_probs=61.6
Q ss_pred eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeee-----ecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFA-----HNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~-----~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.++|||+|||.++|+++|+++|++||.|..+.+..+ ++|+|||+|+++++|++|+ .+++ ..+.|++|+
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g--~~~~g~~l~ 78 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDE--SLFRGRQIK 78 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTT--CEETTEECE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCC--CEECCcEEE
Confidence 578999999999999999999999999988887542 5899999999999999999 8988 689999874
No 77
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.64 E-value=1.4e-16 Score=106.67 Aligned_cols=71 Identities=20% Similarity=0.258 Sum_probs=63.2
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhh---cCccC
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREF---QNKES 148 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~---~g~~i 148 (149)
.+.++|||+|||.++|+++|+++|++||.|..+.+.. .++|||||+|+++++|++|++.|++ ..+ .|++|
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g--~~~~~~~g~~l 88 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHE--QKTLPGMNRPI 88 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTT--TCCCTTCSSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcC--CcccCCCCceE
Confidence 4568999999999999999999999999999988754 2689999999999999999999998 576 77876
Q ss_pred C
Q psy1630 149 K 149 (149)
Q Consensus 149 k 149 (149)
+
T Consensus 89 ~ 89 (106)
T 2dgp_A 89 Q 89 (106)
T ss_dssp E
T ss_pred E
Confidence 3
No 78
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=6.1e-17 Score=107.92 Aligned_cols=70 Identities=20% Similarity=0.291 Sum_probs=63.3
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
+.++|||+|||.++|+++|+++|++||.|..+.+.. .++|||||+|++.++|++|++.+++ ..+.|++|+
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g~~l~ 81 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNG--REFSGRALR 81 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSS--BSCSSSCBE
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCC--CeeCCcEEE
Confidence 357899999999999999999999999999888754 2589999999999999999999998 799999874
No 79
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.64 E-value=9e-17 Score=106.61 Aligned_cols=67 Identities=16% Similarity=0.186 Sum_probs=61.5
Q ss_pred ceeEEEeecCCC-CCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 78 KRCIVILREIPD-STPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 78 ~~~tl~v~~lp~-~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
+.++|||+|||. ++++++|+++|++||.|..+.+ .+|||||+|++.++|++|++.++| ..+.|++|+
T Consensus 21 ~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~Ai~~l~g--~~~~g~~l~ 88 (97)
T 2xnq_A 21 MKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI---KNAFGFIQFDNPQSVRDAIEXESQ--EMNFGKKLI 88 (97)
T ss_dssp TTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE---CSSEEEEEESSHHHHHHHHHHHTT--SEETTEECE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE---eCCEEEEEECCHHHHHHHHHHcCC--CEECCEEEE
Confidence 568999999998 9999999999999999888776 589999999999999999999998 689998874
No 80
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.64 E-value=7.2e-17 Score=104.98 Aligned_cols=68 Identities=16% Similarity=0.353 Sum_probs=62.1
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
..++|||+|||+++|+++|+++|++| .|..+.+. .++|||||+|+++++|++|++.+++ ..+.|++|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-~~~g~afV~f~~~~~a~~Ai~~l~g--~~~~g~~l~ 71 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-RNKRTAFVTLLNGEQAQNAIQMFHQ--YSFRGKDLI 71 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-GGGTEEEECCSCHHHHHHHHHHHTT--EEETTEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-CCCcEEEEEECCHHHHHHHHHHhCC--CeECCcEEE
Confidence 35789999999999999999999999 88888775 6899999999999999999999998 799999874
No 81
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=8.1e-17 Score=101.66 Aligned_cols=67 Identities=16% Similarity=0.187 Sum_probs=60.1
Q ss_pred eEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 80 CIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 80 ~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
++|||+|||.++|+++|+++|+++|.|..+.+.. .++|+|||+|+++++|++|++.++ ..++|++|+
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~---~~~~g~~l~ 72 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR---HELDSKTID 72 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT---CCCSSCCCE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC---CccCCEEEE
Confidence 4799999999999999999999999999888754 258999999999999999999887 489999874
No 82
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.64 E-value=8.2e-17 Score=109.43 Aligned_cols=70 Identities=11% Similarity=0.102 Sum_probs=63.5
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
+.++|||+|||.++|+++|+++|++||.|..+.+.. .++|||||+|+++++|++|++.|++ ..+.|++|+
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g~~l~ 98 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNG--FQIGMKRLK 98 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTT--CEETTEECE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCC--CEECCEEEE
Confidence 457999999999999999999999999999888754 3679999999999999999999998 789999874
No 83
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.64 E-value=8.1e-17 Score=109.37 Aligned_cols=71 Identities=13% Similarity=0.147 Sum_probs=64.0
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeee-----ecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFA-----HNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~-----~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.+.++|||+|||.++|+++|+++|++||.|..+.+..+ ++|||||+|+++++|++|++.|++ ..+.|++|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g~~l~ 88 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGG--QWLGGRQIR 88 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTT--CEETTEECE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCC--CEECCEEEE
Confidence 46789999999999999999999999999988887542 589999999999999999999998 689998874
No 84
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.5e-16 Score=107.70 Aligned_cols=71 Identities=15% Similarity=0.343 Sum_probs=62.8
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCCCc--------eeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhh
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPR--------FISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREF 143 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~--------~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~ 143 (149)
.+.++|||+|||.++|+++|+++|++||.|. .+.+.. .++|||||+|+++++|++|++.|++ ..+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g--~~~ 90 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDG--KDF 90 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTT--CEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCC--Ccc
Confidence 3568999999999999999999999999988 466643 3689999999999999999999999 689
Q ss_pred cCccCC
Q psy1630 144 QNKESK 149 (149)
Q Consensus 144 ~g~~ik 149 (149)
.|++|+
T Consensus 91 ~g~~l~ 96 (113)
T 2cpe_A 91 QGSKLK 96 (113)
T ss_dssp TTEECE
T ss_pred CCCEEE
Confidence 999874
No 85
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.64 E-value=5.4e-17 Score=115.23 Aligned_cols=70 Identities=19% Similarity=0.196 Sum_probs=65.4
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
+.++|||+|||+++|+++|+++|++||.|..+++..+++|||||+|+++++|++|++.|+| ..+.|++|+
T Consensus 72 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g~~l~ 141 (150)
T 2i2y_A 72 LDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDG--RTLCGCRVR 141 (150)
T ss_dssp TSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSS--SCSSSSCCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCC--CEECCeEEE
Confidence 5689999999999999999999999999998888777899999999999999999999999 689999874
No 86
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=9.7e-17 Score=107.04 Aligned_cols=70 Identities=7% Similarity=0.087 Sum_probs=63.4
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCC-CCCCceeeeeee----ecCeeEEEEeccHHHHHHHHHHHHHhhh-hcCccCC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSG-KSCPRFISCEFA----HNNSWYITFENDEDAQKAYRYLREDVRE-FQNKESK 149 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~-~G~v~~v~~~~~----~kg~afVeF~~~e~A~~Ai~~l~~~~~~-~~g~~ik 149 (149)
+.++|||+|||.++|+++|+++|++ ||.|..+.+..+ ++|||||+|+++++|++|++.|++ .. +.|++|+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g--~~~~~g~~l~ 83 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQG--AVGLGSKPVR 83 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTT--CCSSSSSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccC--CcccCCEeEE
Confidence 4578999999999999999999999 999988887543 789999999999999999999998 67 9999874
No 87
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=6.3e-17 Score=109.12 Aligned_cols=70 Identities=19% Similarity=0.138 Sum_probs=63.7
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
...++|||+|||.++|+++|+++|++||.|..+.+..+ +|||||+|++.++|++|++.|++ ..+.|++|+
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~afV~f~~~~~a~~A~~~l~g--~~~~g~~l~ 92 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-KGYSFVRFSTHESAAHAIVSVNG--TTIEGHVVK 92 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHTT--CEETTEECE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-CCEEEEEECCHHHHHHHHHHcCC--CEECCcEEE
Confidence 45689999999999999999999999999888877654 89999999999999999999998 799999874
No 88
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.64 E-value=2.3e-16 Score=108.65 Aligned_cols=70 Identities=13% Similarity=0.196 Sum_probs=63.9
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeee----ecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFA----HNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~----~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
+.++|||+|||.++++++|+++|++||.|..+.+..+ ++|||||+|++.++|++|++.+++ ..++|++|+
T Consensus 34 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g--~~~~g~~l~ 107 (124)
T 2kt5_A 34 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKG--VPLDGRPMD 107 (124)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTT--EESSSCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCC--CEECCcEEE
Confidence 5689999999999999999999999999998888542 689999999999999999999999 699999874
No 89
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.64 E-value=5.4e-17 Score=109.03 Aligned_cols=69 Identities=9% Similarity=0.115 Sum_probs=62.1
Q ss_pred eeEEEeecCCCCC------cHHHHHhhhCCCCCCceeeeee---eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCc-cC
Q psy1630 79 RCIVILREIPDST------PLEEIRGLFSGKSCPRFISCEF---AHNNSWYITFENDEDAQKAYRYLREDVREFQNK-ES 148 (149)
Q Consensus 79 ~~tl~v~~lp~~~------t~~~l~~~F~~~G~v~~v~~~~---~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~-~i 148 (149)
.++|||+|||+.+ |+++|+++|++||.|..+.+.. .++|||||+|+++++|++|++.||| ..+.|+ +|
T Consensus 15 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g--~~~~g~~~l 92 (105)
T 2nlw_A 15 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADG--YKLDKQHTF 92 (105)
T ss_dssp CSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSS--EECSTTCEE
T ss_pred CCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCC--cccCCCceE
Confidence 5799999999999 7899999999999998887753 3689999999999999999999999 799998 76
Q ss_pred C
Q psy1630 149 K 149 (149)
Q Consensus 149 k 149 (149)
+
T Consensus 93 ~ 93 (105)
T 2nlw_A 93 R 93 (105)
T ss_dssp E
T ss_pred E
Confidence 3
No 90
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=7.1e-17 Score=108.86 Aligned_cols=65 Identities=15% Similarity=0.232 Sum_probs=59.6
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcC
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQN 145 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g 145 (149)
...++|||+|||+++|+++|+++|++||.|..+.+..+ |||||+|+++++|++|++.||+ ..+.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g--~~~~g 77 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDN--TKFRS 77 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT--TEEEEEESSHHHHHHHHHHSSS--EEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC--CEEEEEECCHHHHHHHHHHHCc--CCccC
Confidence 35689999999999999999999999999888877554 9999999999999999999998 78998
No 91
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.63 E-value=6.8e-17 Score=101.74 Aligned_cols=66 Identities=18% Similarity=0.265 Sum_probs=59.3
Q ss_pred EEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 81 IVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 81 tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
+|||+|||+++|+++|+++|++||.|..+.+.. .++|||||+|+++++|++|++ +++ ..++|++|+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~--~~~~g~~l~ 71 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHF--HEINNKMVE 71 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSC--CCSSSCCCE
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCC--CEECCEEEE
Confidence 489999999999999999999999999888754 258999999999999999997 777 799999874
No 92
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.63 E-value=6.8e-17 Score=105.13 Aligned_cols=67 Identities=12% Similarity=0.183 Sum_probs=61.4
Q ss_pred eEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 80 CIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 80 ~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
++|||+|||.++++++|+++|++||.|..+.+.. .++|||||+|++++ |++|++.|+| ..++|++|+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g--~~~~g~~l~ 73 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDN--TDFMGRTIR 73 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCS--SCCSSSSCS
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCC--CEECCeEEE
Confidence 6899999999999999999999999999888753 36899999999999 9999999998 789999885
No 93
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.8e-16 Score=105.88 Aligned_cols=69 Identities=20% Similarity=0.246 Sum_probs=61.6
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee------eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF------AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~------~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.+.++|||+|||.++|+++|+++|++|| |..+.+.. .++|||||+|+++++|++|+ .|++ ..+.|++|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g--~~~~g~~l~ 87 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNE--ESLGNKRIR 87 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGT--CEETTEECE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCC--CEeCCcEEE
Confidence 4678999999999999999999999999 88887743 35899999999999999999 8988 689998874
No 94
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.1e-16 Score=105.83 Aligned_cols=68 Identities=7% Similarity=0.056 Sum_probs=62.0
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCc-eeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCcc
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPR-FISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKE 147 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~-~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ 147 (149)
+.++|||+|||+++|+++|+++|++||.|. .+.+.. .++|||||+|+++++|++|++.||+ ..+.|++
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g~~ 81 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKING--KPLPGAT 81 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTT--SEESSCS
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcC--CccCCCC
Confidence 457999999999999999999999999988 887743 3679999999999999999999998 7999998
No 95
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.63 E-value=6.8e-17 Score=112.68 Aligned_cols=71 Identities=21% Similarity=0.277 Sum_probs=62.7
Q ss_pred CceeEEEeecCCCCCcHHHHH----hhhCCCCCCceeeeee--eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 77 HKRCIVILREIPDSTPLEEIR----GLFSGKSCPRFISCEF--AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~----~~F~~~G~v~~v~~~~--~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.+.++|||+|||+.+++++|+ ++|++||.|..|.+.. .++|||||+|++.++|++|++.||| ..+.|++|+
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng--~~l~gr~l~ 103 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQG--YPFQGNPLV 103 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTT--CCCTTSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCC--CEeCCCEEE
Confidence 346799999999999999876 6999999988777643 4799999999999999999999999 799999884
No 96
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=1.1e-16 Score=107.81 Aligned_cols=71 Identities=13% Similarity=0.185 Sum_probs=63.4
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHH------HHhhhhcC
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLR------EDVREFQN 145 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~------~~~~~~~g 145 (149)
.+.++|||+|||+++|+++|+++|++||.|..+.+.. .++|||||+|++.++|++|++.++ + ..+.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~--~~~~g 90 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGG--LKLDG 90 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCC--EESSS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCC--cEEcC
Confidence 3567999999999999999999999999998888753 378999999999999999999998 6 68999
Q ss_pred ccCC
Q psy1630 146 KESK 149 (149)
Q Consensus 146 ~~ik 149 (149)
++|+
T Consensus 91 ~~l~ 94 (111)
T 1x4h_A 91 RQLK 94 (111)
T ss_dssp CEEE
T ss_pred EEEE
Confidence 8763
No 97
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.63 E-value=9.4e-17 Score=105.73 Aligned_cols=70 Identities=14% Similarity=0.207 Sum_probs=63.2
Q ss_pred ceeEEEeecCCCCCcHHHHH----hhhCCCCCCceeeeee--eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 78 KRCIVILREIPDSTPLEEIR----GLFSGKSCPRFISCEF--AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~----~~F~~~G~v~~v~~~~--~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
+.++|||+|||.++++++|+ ++|++||.|..+.+.. .++|||||+|+++++|++|++.|+| ..+.|++|+
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~~g~~l~ 82 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQG--FPFYDKPMR 82 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTT--CEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCC--CEECCcEEE
Confidence 46799999999999999999 9999999988887753 4789999999999999999999999 789998874
No 98
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.63 E-value=1.2e-16 Score=106.31 Aligned_cols=68 Identities=19% Similarity=0.248 Sum_probs=60.3
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee------eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF------AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~------~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
..++|||+|||.++|+++|+++|++|| |..+.+.. .++|||||+|++.++|++|+ .+++ ..++|++|+
T Consensus 18 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g--~~~~g~~l~ 91 (100)
T 2j76_E 18 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNE--ESLGNRRIR 91 (100)
T ss_dssp --CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTT--CCBTTBCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCC--CEECCeEEE
Confidence 468999999999999999999999999 88888743 25899999999999999999 8998 799999874
No 99
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.7e-16 Score=107.47 Aligned_cols=71 Identities=11% Similarity=0.082 Sum_probs=63.5
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeee----ecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFA----HNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~----~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.+.++|||+|||.++|+++|+++|++||.|..+.+..+ ++|||||+|++.++|++|++.|++ ..+.|++|+
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g~~l~ 87 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNG--QLLFDRPMH 87 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTT--CEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCC--CEeCCCEEE
Confidence 35679999999999999999999999999888877542 689999999999999999999998 689998873
No 100
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1e-16 Score=104.48 Aligned_cols=68 Identities=16% Similarity=0.264 Sum_probs=61.4
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.+.++|||+|||.++|+++|+++|++||.|..+.+. +|||||+|+++++|++|++.|++ ..+.|++|+
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~---~~~afV~f~~~~~a~~A~~~l~g--~~~~g~~l~ 74 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV---KDYAFVHMEKEADAKAAIAQLNG--KEVKGKRIN 74 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESCHHHHHHHHHHHTT--CEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhCC--CEECCcEEE
Confidence 356789999999999999999999999998877764 67999999999999999999998 789999874
No 101
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.63 E-value=1.6e-16 Score=110.85 Aligned_cols=70 Identities=19% Similarity=0.226 Sum_probs=63.8
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
+.++|||+|||.++|+++|+++|++||.|..+.+.. .++|||||+|+++++|++|++.|++ ..++|++|+
T Consensus 45 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng--~~i~g~~l~ 119 (129)
T 2kxn_B 45 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANG--MELDGRRIR 119 (129)
T ss_dssp CSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTT--CCSSSSCCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCC--CEECCEEEE
Confidence 567999999999999999999999999998888753 3789999999999999999999999 799999874
No 102
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.7e-16 Score=107.75 Aligned_cols=69 Identities=12% Similarity=0.059 Sum_probs=62.1
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
..++|||+|||.++|+++|+++|++||.|..+.+.. .++|||||+|++.++|++|+ .|++ ..+.|++|+
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g--~~~~g~~l~ 97 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTG--QRLLGVPII 97 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTT--EEETTEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCC--CEeCCeEEE
Confidence 357999999999999999999999999998888743 36899999999999999999 9998 699998863
No 103
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.63 E-value=1.1e-16 Score=103.49 Aligned_cols=70 Identities=9% Similarity=0.134 Sum_probs=60.8
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.+.++|||+|||+++|+++|+++|++||.|..+.+.. .++|||||+|+++++|++|++. ++ ..++|++|+
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~--~~~~g~~i~ 83 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KE--HRLDGRVID 83 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SC--EEETTEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CC--CEECCEEEE
Confidence 3567999999999999999999999999999888753 3689999999999999999965 55 579998863
No 104
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.63 E-value=2.1e-16 Score=110.10 Aligned_cols=70 Identities=13% Similarity=0.180 Sum_probs=62.3
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCCCce--eeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhh----hhcC
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRF--ISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVR----EFQN 145 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~--v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~----~~~g 145 (149)
...++|||+|||+++|+++|+++|++||.|.. |++.. .++|||||+|+++ +|.+|+..|++ . .++|
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g--~~~~~~~~g 97 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQA--LHPPLTIDG 97 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTT--CCCSCCGGG
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcC--CCCCccCCC
Confidence 35679999999999999999999999999966 66643 3789999999999 99999999998 7 8999
Q ss_pred ccCC
Q psy1630 146 KESK 149 (149)
Q Consensus 146 ~~ik 149 (149)
|+|+
T Consensus 98 r~l~ 101 (131)
T 2m2b_A 98 KTIN 101 (131)
T ss_dssp CCCC
T ss_pred EEEE
Confidence 9885
No 105
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2e-16 Score=105.99 Aligned_cols=70 Identities=21% Similarity=0.278 Sum_probs=60.9
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCCCce-eeeee----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRF-ISCEF----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~-v~~~~----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.+.++|||+|||+++|+++|+++|++||.|.. +.+.. .++|||||+|+++++|++|++. ++ ..+.||+|+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~--~~~~gr~i~ 87 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HK--ERIGHRYIE 87 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TT--CCSSSSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-Cc--chhCCcEEE
Confidence 35679999999999999999999999998775 66532 4789999999999999999987 76 799999873
No 106
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=8e-17 Score=108.32 Aligned_cols=77 Identities=14% Similarity=0.110 Sum_probs=64.6
Q ss_pred ccCCCceeEEEeecCCCCCcHHHHHhhhCCCCC-Cceeeee-e-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcC
Q psy1630 73 VRPNHKRCIVILREIPDSTPLEEIRGLFSGKSC-PRFISCE-F-----AHNNSWYITFENDEDAQKAYRYLREDVREFQN 145 (149)
Q Consensus 73 vrr~~~~~tl~v~~lp~~~t~~~l~~~F~~~G~-v~~v~~~-~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g 145 (149)
|++..+.++|||+|||+++|+++|+++|++||. |..+.+. . .++|||||+|+++++|++|++.|++....+.|
T Consensus 2 v~~s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g 81 (109)
T 2dis_A 2 SSGSSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG 81 (109)
T ss_dssp CSCCCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTT
T ss_pred cccccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecC
Confidence 344456789999999999999999999999998 8887775 2 37899999999999999999999611158999
Q ss_pred ccCC
Q psy1630 146 KESK 149 (149)
Q Consensus 146 ~~ik 149 (149)
++|+
T Consensus 82 ~~l~ 85 (109)
T 2dis_A 82 HQIA 85 (109)
T ss_dssp BCCE
T ss_pred CeEE
Confidence 8874
No 107
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.62 E-value=8.5e-17 Score=105.86 Aligned_cols=71 Identities=15% Similarity=0.251 Sum_probs=62.3
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.+.++|||+|||.++|+++|+++|++||.|..+.....++|||||+|+++++|++|++.+++ ..+.|++|+
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g~~l~ 84 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQG--AEIDGRSVS 84 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTE--EEETTEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCC--CEECCeEEE
Confidence 45689999999999999999999999998877722235799999999999999999999998 789998863
No 108
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.62 E-value=1.2e-16 Score=114.99 Aligned_cols=70 Identities=7% Similarity=0.032 Sum_probs=61.4
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCC--CCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKS--CPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G--~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
+.++|||+|||+++|+++|+++|++|| .|..+.+.. .++|||||+|+++++|++|++.||| ..++|++|+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng--~~~~Gr~l~ 130 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPG--KVLNGEKVD 130 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTT--CEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCC--CEECCeEeE
Confidence 457999999999999999999999999 777776643 3789999999999999999999998 799999874
No 109
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.62 E-value=2.2e-16 Score=118.07 Aligned_cols=70 Identities=4% Similarity=0.044 Sum_probs=64.5
Q ss_pred ceeEEEeecCC-CCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 78 KRCIVILREIP-DSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 78 ~~~tl~v~~lp-~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
+.++|||+||| +.+|+++|+++|++||.|..+.+..+.+|||||+|+++++|++|++.||| ..+.|++|+
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng--~~~~g~~l~ 73 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNN--NFMFGQKMN 73 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTT--CEETTEECE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCC--CEECCceEE
Confidence 35799999999 89999999999999999998888766799999999999999999999999 799999874
No 110
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.62 E-value=2.2e-16 Score=106.32 Aligned_cols=69 Identities=17% Similarity=0.213 Sum_probs=61.4
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCC---Cceeeeee----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSC---PRFISCEF----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~---v~~v~~~~----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
..++|||+|||+++|+++|+++|++||. |..+++.. .++|||||+|+++++|++|++ +++ ..++||+|+
T Consensus 10 ~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~--~~~~gr~i~ 85 (107)
T 2lmi_A 10 DVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHR--MYMGQRYVE 85 (107)
T ss_dssp SCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTT--CCSSSSCCC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCc--ceeCCeEEE
Confidence 4678999999999999999999999987 77777743 378999999999999999999 887 789999875
No 111
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.62 E-value=3.9e-16 Score=111.70 Aligned_cols=98 Identities=9% Similarity=0.146 Sum_probs=79.9
Q ss_pred hhhhHHHHHHhhCCCcccccccccccCCC------ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeee-----ecC
Q psy1630 49 KDIKLITEVLRESPNVQVDEEGIKVRPNH------KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFA-----HNN 117 (149)
Q Consensus 49 ~d~~~i~~al~~S~~lev~~d~~~vrr~~------~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~-----~kg 117 (149)
.+.+....|+ ......+.....+|++.. ..++|+|+|||.++|+++|+++|++||.|..+.+..+ ++|
T Consensus 59 ~~~~~A~~A~-~~~~~~~~g~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g 137 (172)
T 2g4b_A 59 RSVDETTQAM-AFDGIIFQGQSLKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKG 137 (172)
T ss_dssp SSHHHHHHHG-GGTTCEETTEECEEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEE
T ss_pred CCHHHHHHHH-HhCCcEecCceeeecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcce
Confidence 4678888888 545555554444554322 3578999999999999999999999999988887543 589
Q ss_pred eeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 118 SWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 118 ~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
+|||+|+++++|++|++.|+| ..++|++|+
T Consensus 138 ~afV~f~~~~~A~~A~~~l~g--~~~~g~~l~ 167 (172)
T 2g4b_A 138 YAFCEYVDINVTDQAIAGLNG--MQLGDKKLL 167 (172)
T ss_dssp EEEEEESSTTHHHHHHHHHTT--CEETTEECE
T ss_pred EEEEEeCCHHHHHHHHHHcCC--CEECCeEEE
Confidence 999999999999999999999 799999874
No 112
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.62 E-value=1.8e-16 Score=111.81 Aligned_cols=70 Identities=13% Similarity=0.275 Sum_probs=62.3
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCC---Cceeeeee----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSC---PRFISCEF----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~---v~~v~~~~----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.+.++|||+|||+++|+++|+++|++||. |..+.+.. .++|||||+|+++++|++|++ +++ ..++||+|+
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g--~~l~gr~i~ 118 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDR--ESMGHRYIE 118 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTE--EESSSSEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCC--CEECCEEEE
Confidence 35679999999999999999999999998 77777753 378999999999999999999 888 799999873
No 113
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.61 E-value=1.3e-16 Score=109.46 Aligned_cols=69 Identities=14% Similarity=0.300 Sum_probs=61.3
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCC---Cceeeeee----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSC---PRFISCEF----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~---v~~v~~~~----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
+.++|||+|||+++|+++|+++|++||. |..+++.. .++|||||+|+++++|++|++ +++ ..+.||+|+
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g--~~~~gr~i~ 91 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDR--ESMGHRYIE 91 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTT--EEETTEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCC--CeECCeEEE
Confidence 4678999999999999999999999998 67777743 378999999999999999999 887 799999863
No 114
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.8e-16 Score=105.31 Aligned_cols=68 Identities=19% Similarity=0.200 Sum_probs=58.9
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
..++|||+|||+++|+++|+++|++||.+ .+.+.. .++|||||+|+++++|++|++ +++ ..+.||.|+
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~--~~~~gr~i~ 85 (102)
T 1wez_A 14 TGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDK--ANMQHRYVE 85 (102)
T ss_dssp SSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSS--CCSSSSCCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCC--CeECCcEEE
Confidence 45789999999999999999999999954 666643 378999999999999999995 676 799999874
No 115
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.61 E-value=1.2e-16 Score=100.41 Aligned_cols=66 Identities=20% Similarity=0.296 Sum_probs=58.9
Q ss_pred EEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 81 IVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 81 tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
+|||+|||.++|+++|+++|++||.|..+.+.. .++|||||+|+++++|++|++. ++ ..+.|++|+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~--~~~~g~~l~ 71 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KY--HNVGLSKCE 71 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SS--CCBTTBCCC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CC--CeECCEEEE
Confidence 589999999999999999999999999888743 3689999999999999999985 55 689999874
No 116
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.61 E-value=1.4e-16 Score=106.40 Aligned_cols=67 Identities=15% Similarity=0.251 Sum_probs=60.6
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
+.++|||+|||+++|+++|+++|++||.|..+.+ .+|||||+|+++++|++|++.|++ ..+.|++|+
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~---~~~~afV~f~~~~~a~~A~~~l~g--~~~~g~~l~ 76 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKK---LKDYAFIHFDERDGAVKAMEEMNG--KDLEGENIE 76 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEE---CSSCEEEEESSHHHHHHHHHHHTT--EEETTEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE---ECCEEEEEeCCHHHHHHHHHHHCC--CccCCCEEE
Confidence 4578999999999999999999999998887766 478999999999999999999999 689998763
No 117
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.9e-16 Score=103.68 Aligned_cols=69 Identities=12% Similarity=0.152 Sum_probs=60.1
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCC-CceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSC-PRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~-v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
+.++|||+|||.++|+++|+++|++||. +..+.+ .++|||||+|+++++|++|++.|++. ..+.|++|+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~-~~~~g~~l~ 76 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL--LKSGYAFVDYPDQNWAIRAIETLSGK-VELHGKIME 76 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE--EETTEEEECCSCHHHHHHHHHHHTTT-CEETTEECE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE--cCCCEEEEEECCHHHHHHHHHHccCC-eeECCEEEE
Confidence 4578999999999999999999999998 665554 47999999999999999999999872 378888774
No 118
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.60 E-value=1.1e-16 Score=103.25 Aligned_cols=68 Identities=15% Similarity=0.187 Sum_probs=60.3
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCC----C-------CCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCc
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGK----S-------CPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNK 146 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~----G-------~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~ 146 (149)
+.++|||+|||+++|+++|+++|++| | .+..+.+.. .+|||||+|+++++|++|+ .+|+ ..+.|+
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~-~kg~afV~f~~~~~a~~A~-~l~g--~~~~g~ 80 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-DKNFAFLEFRSVDETTQAM-AFDG--IIFQGQ 80 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS-SSSEEEEEESSHHHHHHHG-GGTT--CEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecC-CCcEEEEEcCCHHHHHHHH-hcCC--CEECCe
Confidence 46799999999999999999999999 8 666666544 5899999999999999999 9998 799999
Q ss_pred cCC
Q psy1630 147 ESK 149 (149)
Q Consensus 147 ~ik 149 (149)
+|+
T Consensus 81 ~l~ 83 (87)
T 2hzc_A 81 SLK 83 (87)
T ss_dssp ECE
T ss_pred EEE
Confidence 874
No 119
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=1.4e-16 Score=105.76 Aligned_cols=71 Identities=17% Similarity=0.240 Sum_probs=60.7
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeee-eeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCE-FAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~-~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.+.++|||+|||.++|+++|+++|++||.|..+... ..++|||||+|+++++|++|++.|++ ..+.|++|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g--~~~~g~~l~ 84 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNK--REIEGRAIR 84 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSS--EEETTEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCC--CEeCCeEEE
Confidence 356899999999999999999999999977443321 24789999999999999999999998 689998763
No 120
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.60 E-value=5.1e-16 Score=103.51 Aligned_cols=69 Identities=13% Similarity=0.192 Sum_probs=61.3
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.+.++|||+|||.++|+++|+++|++|| |..+.+.. .++|||||+|+++++|++|+ .|++ ..+.|++|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g--~~~~g~~l~ 86 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDG--ALLGDRSLR 86 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTT--CEETTEECE
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCC--CeECCeEEE
Confidence 4578999999999999999999999997 77777753 36899999999999999999 8988 799999874
No 121
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=3.7e-16 Score=103.53 Aligned_cols=68 Identities=21% Similarity=0.219 Sum_probs=59.9
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCC--CCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGK--SCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~--G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.+.++|||+|||+++|+++|+++|++| |.|..+.+ .+|||||+|++.++|++|++.|++ ..+.|++|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~---~~g~afV~f~~~~~A~~A~~~l~g--~~~~g~~l~ 82 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK---IRDYAFVHFSNREDAVEAMKALNG--KVLDGSPIE 82 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEE---CSSEEEEEESSHHHHHHHHHHHSS--EEETTEEEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE---eCCeEEEEeCCHHHHHHHHHHhCC--CEeCCcEEE
Confidence 356799999999999999999999999 76665543 689999999999999999999999 689998763
No 122
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=2.2e-16 Score=105.55 Aligned_cols=70 Identities=11% Similarity=0.061 Sum_probs=62.1
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.+.++|||+|||+++|+++|+++|++||.|..+.+.. .++|||||+|+++++|++|++. ++ ..+.|++|+
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~--~~~~g~~l~ 88 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RP--HTLDGRNID 88 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CS--EEETTEEEB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CC--CeECCEEEE
Confidence 4568999999999999999999999999998888754 3679999999999999999988 76 789998764
No 123
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=3.2e-16 Score=108.09 Aligned_cols=69 Identities=14% Similarity=0.192 Sum_probs=60.2
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCce-eeeee----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRF-ISCEF----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~-v~~~~----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
+.++|||+|||+++|+++|+++|++||.|.. +.+.. .++|||||+|+++++|++|++ +++ ..+.|++|+
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g--~~~~gr~i~ 97 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHK--QYMGNRFIQ 97 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCS--BCSTTSCBE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCC--CeECCcEEE
Confidence 4689999999999999999999999998876 33321 378999999999999999999 888 799999874
No 124
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.1e-16 Score=107.54 Aligned_cols=70 Identities=16% Similarity=0.269 Sum_probs=61.3
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCCC-ceeeeee----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSCP-RFISCEF----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v-~~v~~~~----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.+.++|||+|||+++|+++|+++|++||.| ..+.+.. .++|||||+|+++++|++|++. ++ ..+.|++|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~--~~~~gr~i~ 87 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HR--KKLNGREAF 87 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CS--EEETTEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CC--CccCCeEEE
Confidence 356799999999999999999999999998 7777743 3799999999999999999987 66 789998863
No 125
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.60 E-value=9.9e-16 Score=108.53 Aligned_cols=99 Identities=11% Similarity=0.167 Sum_probs=79.5
Q ss_pred hhhhHHHHHHhhCCCcccccccccccC--------CCceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----ee
Q psy1630 49 KDIKLITEVLRESPNVQVDEEGIKVRP--------NHKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AH 115 (149)
Q Consensus 49 ~d~~~i~~al~~S~~lev~~d~~~vrr--------~~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~ 115 (149)
.+.+....|++......+......|.. ..+.++|+|+|||.++|+++|+++|++||.|..+.+.. .+
T Consensus 49 ~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~ 128 (166)
T 3md3_A 49 HQSHDANIALQTLNGKQIENNIVKINWAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSS 128 (166)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEEECCCCCCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCE
T ss_pred CCHHHHHHHHHHcCCCccCCCeeEEEEcCCCCCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCc
Confidence 366778888866555555444344421 23578999999999999999999999999998887753 36
Q ss_pred cCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 116 NNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 116 kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
+|+|||+|+++++|++|++.|+| ..++|++|+
T Consensus 129 ~g~afV~f~~~~~A~~A~~~l~g--~~~~g~~i~ 160 (166)
T 3md3_A 129 RGYGFVSFTSQDDAQNAMDSMQG--QDLNGRPLR 160 (166)
T ss_dssp EEEEEEEESCHHHHHHHHHHHTT--CEETTEECE
T ss_pred ceEEEEEeCCHHHHHHHHHHhCC--CccCCcEEE
Confidence 89999999999999999999999 799999874
No 126
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.60 E-value=2.4e-16 Score=110.00 Aligned_cols=71 Identities=15% Similarity=0.196 Sum_probs=64.1
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.+.++|||+|||.++|+++|+++|++||.|..+.+.. .++|||||+|+++++|++|++.|++ ..+.|++|+
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g~~l~ 136 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNE--SELFGRTIR 136 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTE--EEETTEEEE
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCC--CEECCEEEE
Confidence 3578999999999999999999999999998888743 3789999999999999999999998 689999874
No 127
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.60 E-value=3.3e-16 Score=102.46 Aligned_cols=68 Identities=16% Similarity=0.142 Sum_probs=55.6
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKES 148 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i 148 (149)
.+.++|||+|||+++|+++|+++|++||.|..+++..+++|||||+|+++++|++ +++....++|++|
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v 76 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISV 76 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEE
Confidence 4568999999999999999999999999999988877799999999999999984 4553122346554
No 128
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.60 E-value=6.2e-16 Score=108.24 Aligned_cols=69 Identities=16% Similarity=0.078 Sum_probs=61.7
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCe-eEEEEeccHHHHHHHHHHHHHhhhhcC--ccC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNS-WYITFENDEDAQKAYRYLREDVREFQN--KES 148 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~-afVeF~~~e~A~~Ai~~l~~~~~~~~g--~~i 148 (149)
+-..|||+|||+.+|+++|+++|++||.|..|.+..+.+|| |||+|++.++|++|++.||| ..+.| ++|
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG--~~i~g~~~~L 98 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDG--QNIYNACCTL 98 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTT--CEEETTEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCC--CeecCCCcEE
Confidence 34579999999999999999999999999998886667888 99999999999999999999 68887 544
No 129
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.6e-16 Score=108.99 Aligned_cols=68 Identities=9% Similarity=0.133 Sum_probs=59.7
Q ss_pred ceeEEEe--ecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhh-----cCccC
Q psy1630 78 KRCIVIL--REIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREF-----QNKES 148 (149)
Q Consensus 78 ~~~tl~v--~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~-----~g~~i 148 (149)
+.++||| +|||+++|+++|+++|++||.|..+.+.. .+|||||+|+++++|++|++.||| +++ +|++|
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~-~rgfaFV~f~~~~~A~~Ai~~lnG--~~~~~~lg~g~~l 98 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-NKPYSFARYRTTEESKRAYVTLNG--KEVVDDLGQKITL 98 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT-TCSCEEEEESSHHHHHHHHHHTTT--CEEECTTSCEEEC
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCC--CEEccccCCCcEE
Confidence 4568999 67999999999999999999988887754 589999999999999999999999 666 56654
No 130
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=5.6e-16 Score=101.05 Aligned_cols=69 Identities=14% Similarity=0.189 Sum_probs=61.4
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
...++|||+|||+++|+++|+++|++| .|..+.+.. .++|+|||+|+++++|++|++ +++ ..+.|++|+
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g--~~~~gr~i~ 80 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNR--EYMGGRYIE 80 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCS--EEETTEEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCC--ceeCCcEEE
Confidence 346799999999999999999999999 888887754 368999999999999999999 988 799998873
No 131
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.59 E-value=6.7e-16 Score=111.43 Aligned_cols=71 Identities=15% Similarity=0.188 Sum_probs=63.7
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeee-----ecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFA-----HNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~-----~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.+.++|||+|||+.+|+++|+++|++||.|..+.+... ++|||||+|++.++|++|++.|++ ..|.|++|+
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g--~~~~g~~l~ 145 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNG--AEIMGQTIQ 145 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTT--CEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCC--CEECCEEEE
Confidence 35689999999999999999999999999988887543 689999999999999999999999 689999874
No 132
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.59 E-value=5e-16 Score=110.89 Aligned_cols=70 Identities=20% Similarity=0.321 Sum_probs=63.6
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
+.++|||+|||.++|+++|+++|++||.|..|.+.. .++|||||+|+++++|++|++.|++ ..+.|++|+
T Consensus 38 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g--~~~~g~~l~ 112 (156)
T 1h2v_Z 38 KSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYING--TRLDDRIIR 112 (156)
T ss_dssp TCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTT--SEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCC--CEECCeEEE
Confidence 568999999999999999999999999998888753 3689999999999999999999998 689998874
No 133
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.4e-15 Score=103.08 Aligned_cols=69 Identities=7% Similarity=0.047 Sum_probs=60.7
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCcc
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKE 147 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ 147 (149)
.+.++|||+|||.++|+++|+++|++||.|..+.+.. .++|||||+|+++++|++|++.||+ ..++|++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g--~~~~~~~ 95 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNG--KFIKTPP 95 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBT--CCCCCCT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCC--CEEcCCc
Confidence 3568999999999999999999999999988888754 3689999999999999999999998 6885443
No 134
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=6.3e-16 Score=105.07 Aligned_cols=67 Identities=15% Similarity=0.134 Sum_probs=59.5
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKES 148 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i 148 (149)
+.++|||+|||+++|+++|+++|++| .|..|++.. .++|||||+|+++++|++|+ .+++ ..++||.|
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~--~~~~gr~i 85 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNR--MLMIQRYV 85 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTT--EEETTEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCC--CeECCeEE
Confidence 45799999999999999999999999 777777743 37899999999999999999 5777 79999876
No 135
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.58 E-value=3.9e-16 Score=107.26 Aligned_cols=69 Identities=16% Similarity=0.214 Sum_probs=61.9
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
+.++|||+|||.++|+++|+++|++||.|..+.+.. .++|||||+|+++++|++|+ .+++ ..|.|++|+
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g--~~~~g~~l~ 108 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDE--TVFRGRTIK 108 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTT--CEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCC--CeECCeEEE
Confidence 357999999999999999999999999998888754 25899999999999999999 7988 689999874
No 136
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.58 E-value=3.3e-16 Score=109.62 Aligned_cols=70 Identities=19% Similarity=0.175 Sum_probs=63.1
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
+.++|||+|||.++|+++|+++|++||.|..+.+.. .++|||||+|++.++|++|++.|++ ..+.|++|+
T Consensus 41 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g~~l~ 115 (139)
T 1u6f_A 41 VLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNG--FNILNKRLK 115 (139)
T ss_dssp TTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTT--EECSSCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCC--CEECCeEEE
Confidence 457999999999999999999999999998888753 3689999999999999999999998 689998863
No 137
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=3.3e-16 Score=106.53 Aligned_cols=70 Identities=11% Similarity=0.122 Sum_probs=62.0
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.+.++|||+|||.++|+++|+++|++||.|..+.+.. .++|||||+|+++++|++|++.+++ .+.|++|+
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~---~~~g~~l~ 89 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP---IIDGRKAN 89 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC---EETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC---cCCCEEEE
Confidence 3568999999999999999999999999998888743 3689999999999999999998875 78888773
No 138
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.58 E-value=1.1e-15 Score=114.08 Aligned_cols=128 Identities=9% Similarity=0.077 Sum_probs=89.9
Q ss_pred hhhhhhhcCCCcee-eeEEeechh--hhhhh----chhhhHHHHHHhhCCCcccccccccccCC--------CceeEEEe
Q psy1630 20 DAYLLSQMDNDQYV-PIWTVANFN--QVKKL----TKDIKLITEVLRESPNVQVDEEGIKVRPN--------HKRCIVIL 84 (149)
Q Consensus 20 d~~l~~~~~~~g~v-pi~~~~~F~--kvk~l----~~d~~~i~~al~~S~~lev~~d~~~vrr~--------~~~~tl~v 84 (149)
+.-|++.+..-|-| .+.++..-. +-+.+ -.+.+....|++......+.....++... ...++|||
T Consensus 29 e~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~l~v 108 (213)
T 4f02_A 29 EAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFI 108 (213)
T ss_dssp HHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCTHHHHHCTTEEEE
T ss_pred HHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccccccccccccccccceE
Confidence 35566666655543 444443211 11111 24677888888765544433322233211 13468999
Q ss_pred ecCCCCCcHHHHHhhhCCCCCCceeeeee---eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 85 REIPDSTPLEEIRGLFSGKSCPRFISCEF---AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 85 ~~lp~~~t~~~l~~~F~~~G~v~~v~~~~---~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
+|||+++|+++|+++|++||.|..+++.. .++|||||+|++.++|++|++.||| ..++|++|+
T Consensus 109 ~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng--~~~~g~~i~ 174 (213)
T 4f02_A 109 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG--MLLNDRKVF 174 (213)
T ss_dssp ESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTT--CEETTEECE
T ss_pred CCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCC--CEECCEEEE
Confidence 99999999999999999999998888754 3789999999999999999999999 799999874
No 139
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=5.3e-16 Score=105.17 Aligned_cols=70 Identities=16% Similarity=0.116 Sum_probs=60.8
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeee----e-eeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISC----E-FAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~----~-~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
+.++|||+|||.++|+++|+++|++||.|..+.+ . ..++|||||+|++.++|++|++.|++ ..+.|++|+
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g--~~~~g~~l~ 98 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNG--YKLYGKILV 98 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTT--CBCSSCBCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCC--CEeCCcEEE
Confidence 5689999999999999999999999998854322 2 24689999999999999999999999 689999874
No 140
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.58 E-value=4.1e-16 Score=109.46 Aligned_cols=70 Identities=11% Similarity=0.148 Sum_probs=63.7
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
+.++|||+|||+++|+++|+++|++||.|..+.+.. .++|||||+|+++++|++|++.|++ ..+.|++|+
T Consensus 46 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g--~~i~g~~l~ 120 (135)
T 2lea_A 46 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG--AVLDGRELR 120 (135)
T ss_dssp GCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTT--CCSSSSCCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCC--CEECCEEEE
Confidence 567999999999999999999999999999888743 3689999999999999999999998 689999874
No 141
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=6.6e-16 Score=102.59 Aligned_cols=71 Identities=15% Similarity=0.314 Sum_probs=59.5
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeee--eeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCE--FAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~--~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.+.++|||+|||.++|+++|+++|++++.+..+.-. ..++|||||+|+++++|++|++.|++ ..+.|++|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~~g~~l~ 85 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMED--GEIDGNKVT 85 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTT--CEETTEECE
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCC--CeECCeEEE
Confidence 456899999999999999999999988644433221 13689999999999999999999999 699999874
No 142
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.57 E-value=9.6e-16 Score=114.46 Aligned_cols=71 Identities=13% Similarity=0.075 Sum_probs=62.7
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.+.+||||+|||+++|+++|+++|++||.|..+++.. .++|||||+|+++++|++|++.+++ ..+.|++|+
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~--~~~~g~~i~ 88 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNF--DVIKGKPVR 88 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT--CEETTEECE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhh--hhcCCcccc
Confidence 3567999999999999999999999999998888753 3789999999999999999999998 688888763
No 143
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.57 E-value=3.3e-15 Score=110.43 Aligned_cols=99 Identities=12% Similarity=0.134 Sum_probs=78.5
Q ss_pred hhhhHHHHHHhhCCCcccccccccccCC-----------------CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeee
Q psy1630 49 KDIKLITEVLRESPNVQVDEEGIKVRPN-----------------HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISC 111 (149)
Q Consensus 49 ~d~~~i~~al~~S~~lev~~d~~~vrr~-----------------~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~ 111 (149)
.+.+....|++......+......|.+. ...++|||+|||.++|+++|+++|++||.|..+.+
T Consensus 78 ~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i 157 (216)
T 2qfj_A 78 EVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATL 157 (216)
T ss_dssp SSHHHHHHHHHHHSSCCCC-CCCEEECCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEE
T ss_pred CCHHHHHHHHHHccCCeeCCeeEEEecCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEE
Confidence 4677888888754444444444444321 13479999999999999999999999999988887
Q ss_pred ee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 112 EF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 112 ~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.. .++|+|||+|++.++|.+|++.|++ ..++|++|+
T Consensus 158 ~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g--~~~~g~~i~ 198 (216)
T 2qfj_A 158 ARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNL--FDLGGQYLR 198 (216)
T ss_dssp EECTTTCCEEEEEEEEESSHHHHHHHHHHHTT--CBCSSSBCE
T ss_pred EecCCCCCcCceEEEEecCHHHHHHHHHHccC--CEeCCcEEE
Confidence 54 2589999999999999999999999 799999874
No 144
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=7.1e-16 Score=106.97 Aligned_cols=70 Identities=20% Similarity=0.231 Sum_probs=60.0
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCCC----ceeeeee----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSCP----RFISCEF----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKES 148 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v----~~v~~~~----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i 148 (149)
.+.++|||+|||+++|+++|+++|++||.| ..|.+.. .++|||||+|+++++|++|++. ++ ..+.||.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~--~~l~gR~i 97 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HK--DLLGKRYI 97 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TT--EESSSCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CC--CeeCCeEE
Confidence 456799999999999999999999999976 4566643 3789999999999999999986 66 78999876
Q ss_pred C
Q psy1630 149 K 149 (149)
Q Consensus 149 k 149 (149)
.
T Consensus 98 ~ 98 (123)
T 2dha_A 98 E 98 (123)
T ss_dssp C
T ss_pred E
Confidence 3
No 145
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=1.3e-15 Score=100.70 Aligned_cols=63 Identities=14% Similarity=0.182 Sum_probs=55.9
Q ss_pred eEEEeecCCCCCcHHH----HHhhhCCC-CCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 80 CIVILREIPDSTPLEE----IRGLFSGK-SCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 80 ~tl~v~~lp~~~t~~~----l~~~F~~~-G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.+|||+|||+++++++ |+++|++| |.|..| ..|+|||+|++.++|++|++.|+| ..+.||+|+
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-----tgG~AfV~F~~~esA~~A~~~l~G--~~l~gr~i~ 77 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-----TGCSAILRFINQDSAERAQKRMEN--EDVFGNRII 77 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-----CTTCEEEEESSHHHHHHHHHHHTT--CCSSSSCCE
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-----ecCEEEEEECCHHHHHHHHHHhcC--CccCCceEE
Confidence 3499999999999988 55899999 587776 349999999999999999999999 799999985
No 146
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1.1e-15 Score=100.29 Aligned_cols=69 Identities=4% Similarity=0.002 Sum_probs=58.5
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
..++|||+|||+++|+++|+++|++||.|..+........||||+|+++++|++|++ +++ ..++|++|+
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g--~~~~g~~l~ 75 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQ--HSLGGHRLR 75 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSC--CEETTEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCC--eEECCEEEE
Confidence 456899999999999999999999999988773322222299999999999999999 988 799999874
No 147
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.57 E-value=5.2e-16 Score=104.99 Aligned_cols=69 Identities=14% Similarity=0.153 Sum_probs=59.2
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKES 148 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i 148 (149)
.+.++|||+|||.++|+++|+++|++||.|..+.+.. .++|||||+|+++++|++|++.+ + ..++|++|
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~--~~l~g~~l 96 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-R--HELDSKTI 96 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-C--EEETTEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-C--CcCCCEEE
Confidence 3567999999999999999999999999998888743 36899999999999999999876 3 58899876
No 148
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=7.9e-16 Score=104.68 Aligned_cols=69 Identities=10% Similarity=0.061 Sum_probs=61.4
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
+.++|||+|||.++|+++|+++|++||.|..+.+.. .++|||||+|+++++|++|++. ++ ..+.|++|+
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~--~~~~g~~l~ 99 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RP--HSIDGRVVE 99 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CS--EEETTEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CC--cEECCEEEE
Confidence 458999999999999999999999999999888754 2689999999999999999987 66 689998763
No 149
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.35 E-value=1.9e-16 Score=107.85 Aligned_cols=70 Identities=13% Similarity=0.257 Sum_probs=62.4
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCce--------eeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhc
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRF--------ISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQ 144 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~--------v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~ 144 (149)
+.++|||+|||.++|+++|+++|++||.|.. +.+.. .++|||||+|+++++|++|++.|++ ..+.
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g--~~~~ 83 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDG--KEFS 83 (116)
Confidence 4678999999999999999999999999887 65532 3689999999999999999999999 6999
Q ss_pred CccCC
Q psy1630 145 NKESK 149 (149)
Q Consensus 145 g~~ik 149 (149)
|++|+
T Consensus 84 g~~l~ 88 (116)
T 2lcw_A 84 GNPIK 88 (116)
Confidence 99874
No 150
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.57 E-value=1e-15 Score=107.78 Aligned_cols=71 Identities=11% Similarity=0.105 Sum_probs=61.8
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCCCcee--------eee--eeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCc
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFI--------SCE--FAHNNSWYITFENDEDAQKAYRYLREDVREFQNK 146 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v--------~~~--~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~ 146 (149)
.+.++|||+|||+++|+++|+++|++||.|..+ .+. ..++|||||+|.+.++|++|+..||| ..+.|+
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng--~~~~g~ 120 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANG--YVLFGK 120 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTT--BEETTE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCC--CEeCCc
Confidence 456799999999999999999999999998763 222 24789999999999999999999999 799999
Q ss_pred cCC
Q psy1630 147 ESK 149 (149)
Q Consensus 147 ~ik 149 (149)
+|+
T Consensus 121 ~l~ 123 (143)
T 3egn_A 121 PMV 123 (143)
T ss_dssp ECE
T ss_pred EEE
Confidence 874
No 151
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.57 E-value=5.6e-16 Score=110.55 Aligned_cols=70 Identities=11% Similarity=0.148 Sum_probs=63.3
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
..++|||+|||+++|+++|+++|++||.|..+.+.. .++|||||+|++.++|++|++.|+| ..+.|++|+
T Consensus 69 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g~~l~ 143 (158)
T 2kn4_A 69 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG--AVLDGRELR 143 (158)
T ss_dssp BCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTT--EESSSSEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCC--CEECCeEEE
Confidence 468999999999999999999999999988887743 3789999999999999999999999 689999873
No 152
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.56 E-value=3.1e-15 Score=106.44 Aligned_cols=99 Identities=11% Similarity=0.108 Sum_probs=78.7
Q ss_pred hhhhHHHHHHhhCCCcccccccccccC------CCceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeee-----ecC
Q psy1630 49 KDIKLITEVLRESPNVQVDEEGIKVRP------NHKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFA-----HNN 117 (149)
Q Consensus 49 ~d~~~i~~al~~S~~lev~~d~~~vrr------~~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~-----~kg 117 (149)
.+.+....|++......+......|.. ..+.++|+|+|||.++|+++|+++|++||.|..+.+..+ ++|
T Consensus 53 ~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g 132 (168)
T 1b7f_A 53 TSEMDSQRAIKVLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRG 132 (168)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEEECCCCSSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEE
T ss_pred CCHHHHHHHHHhcCCCEeCCcEEEEEecCCCcccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcce
Confidence 467788888875555555444444431 124689999999999999999999999999988887542 579
Q ss_pred eeEEEEeccHHHHHHHHHHHHHhhhhcC--ccCC
Q psy1630 118 SWYITFENDEDAQKAYRYLREDVREFQN--KESK 149 (149)
Q Consensus 118 ~afVeF~~~e~A~~Ai~~l~~~~~~~~g--~~ik 149 (149)
+|||+|++.++|.+|++.|+| ..+.| ++|+
T Consensus 133 ~afV~f~~~~~A~~A~~~l~g--~~~~g~~~~l~ 164 (168)
T 1b7f_A 133 VAFVRYNKREEAQEAISALNN--VIPEGGSQPLS 164 (168)
T ss_dssp EEEEEESSHHHHHHHHHHHTT--CCCTTCSSCCE
T ss_pred EEEEEECCHHHHHHHHHHhcC--CEecCCCeEEE
Confidence 999999999999999999999 68877 7763
No 153
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.56 E-value=6.4e-16 Score=109.34 Aligned_cols=68 Identities=19% Similarity=0.232 Sum_probs=59.7
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
..++|||+|||+++|+++|+++|++|| +..|.+.. .++|||||+|+++++|++|+ .+++ ..+.||+|+
T Consensus 45 ~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g--~~l~gR~i~ 116 (139)
T 2hgn_A 45 TGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDR--ANMQHRYIE 116 (139)
T ss_dssp CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCS--CSSSSCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCC--CEECCEEEE
Confidence 457899999999999999999999999 66777643 37899999999999999999 6777 799999874
No 154
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=1.1e-15 Score=100.40 Aligned_cols=71 Identities=15% Similarity=0.188 Sum_probs=61.7
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCCCceee-eee-eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFIS-CEF-AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~-~~~-~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
...++|||+|||+++|+++|+++|++||.|..++ +.. ...|.|||+|+++++|++|++.||+ ..++|++|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g--~~~~g~~l~ 85 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNG--FQLENFTLK 85 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTT--CBCSSCBCE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCC--CEECCcEEE
Confidence 3467899999999999999999999999988884 543 2445599999999999999999999 799999874
No 155
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.56 E-value=7.2e-16 Score=102.51 Aligned_cols=67 Identities=21% Similarity=0.231 Sum_probs=59.1
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKES 148 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i 148 (149)
..++|||+|||.++|+++|+++|++||.|..+.+.. .++|||||+|+++++|++|++ ++ ..++|++|
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~--~~~~g~~l 78 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQ--INFHGKKL 78 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CC--CEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CC--CeECCEEE
Confidence 468999999999999999999999999998888754 278999999999999999998 44 57788766
No 156
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.56 E-value=4.4e-16 Score=103.38 Aligned_cols=69 Identities=17% Similarity=0.189 Sum_probs=59.2
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeee----eeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCE----FAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~----~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
+.++|||+|||.++|+++|+++|++||.+....+. ..++|||||+|++.++|++|++ |++ ..+.|++|+
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g--~~~~g~~l~ 88 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTG--LKVFGNEIK 88 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGG--CCBTTBCCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCC--cEECCcEEE
Confidence 46899999999999999999999999976552221 1378999999999999999998 988 799999874
No 157
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.56 E-value=2.3e-15 Score=104.86 Aligned_cols=69 Identities=23% Similarity=0.246 Sum_probs=58.6
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCCCc--eeeeee----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPR--FISCEF----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~--~v~~~~----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.+.++|||+|||+++|+++|+++|++|+ |. .|.+.. .++|||||+|+++++|++|++. ++ ..++||+|+
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~~-i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~--~~l~gR~I~ 114 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGLE-IVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HK--ERIGHRYIE 114 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TT--CCBTTBCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCC-ceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CC--CEECCEEEE
Confidence 3467899999999999999999999994 44 566543 3789999999999999999985 55 699999884
No 158
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.56 E-value=3.6e-15 Score=105.71 Aligned_cols=126 Identities=14% Similarity=0.092 Sum_probs=89.3
Q ss_pred hhhhhhcCCCcee-eeEEeechh--hhhhh----chhhhHHHHHHhhCCCcccccccccccCC------CceeEEEeecC
Q psy1630 21 AYLLSQMDNDQYV-PIWTVANFN--QVKKL----TKDIKLITEVLRESPNVQVDEEGIKVRPN------HKRCIVILREI 87 (149)
Q Consensus 21 ~~l~~~~~~~g~v-pi~~~~~F~--kvk~l----~~d~~~i~~al~~S~~lev~~d~~~vrr~------~~~~tl~v~~l 87 (149)
.-|++.+..-|-| .+.++..-. +-+.+ -.+.+....|++......+......|... .+.++|+|+||
T Consensus 17 ~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~l~v~nl 96 (167)
T 1fxl_A 17 EEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGL 96 (167)
T ss_dssp HHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCGGGTTCEEEEESC
T ss_pred HHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCCCcccCCCCcEEECCC
Confidence 4466666655643 344433210 11111 24677888888754445554444444321 24578999999
Q ss_pred CCCCcHHHHHhhhCCCCCCceeeeeee-----ecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630 88 PDSTPLEEIRGLFSGKSCPRFISCEFA-----HNNSWYITFENDEDAQKAYRYLREDVREFQNKES 148 (149)
Q Consensus 88 p~~~t~~~l~~~F~~~G~v~~v~~~~~-----~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i 148 (149)
|.++|+++|+++|++||.|..+.+..+ ++|+|||+|++.++|++|++.|+| ..+.|+.+
T Consensus 97 ~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g--~~~~g~~~ 160 (167)
T 1fxl_A 97 PKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG--QKPSGATE 160 (167)
T ss_dssp CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT--CCCTTCSS
T ss_pred CCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcC--CccCCCcc
Confidence 999999999999999999988887543 589999999999999999999999 79999763
No 159
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.56 E-value=3.4e-15 Score=103.71 Aligned_cols=64 Identities=14% Similarity=0.010 Sum_probs=57.1
Q ss_pred eEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCe-eEEEEeccHHHHHHHHHHHHHhhhhcCc
Q psy1630 80 CIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNS-WYITFENDEDAQKAYRYLREDVREFQNK 146 (149)
Q Consensus 80 ~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~-afVeF~~~e~A~~Ai~~l~~~~~~~~g~ 146 (149)
..|||+|||+.+|+++|+++|++||.|..|.+..+ .|| |||+|++.++|++|++.||| ..+.|+
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-~Gf~aFVef~~~~~A~~A~~~LnG--~~i~g~ 90 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-NGIQAMVEFESVLCAQKAKAALNG--ADIYAG 90 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-SSEEEEEEESSHHHHHHHHHHHTT--CCCBTT
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCC--CEecCC
Confidence 45789999999999999999999999998887443 596 99999999999999999999 688773
No 160
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.56 E-value=2.1e-15 Score=106.95 Aligned_cols=69 Identities=22% Similarity=0.248 Sum_probs=62.1
Q ss_pred eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.++|||+|||.++|+++|+++|++||.|..+.+.. .++|+|||+|.++++|++|++.+++ ..+.|++|+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~--~~~~g~~l~ 75 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG--LRLQTKTIK 75 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT--CEETTEECE
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCC--CccCCceEE
Confidence 47899999999999999999999999988887744 2579999999999999999999998 799998873
No 161
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.56 E-value=1.2e-15 Score=115.90 Aligned_cols=70 Identities=13% Similarity=0.065 Sum_probs=61.9
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCC--CCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKS--CPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G--~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
..++|||+|||+++|+++|+++|++|| .|..|.+.. .++|||||+|++.++|++||+.||+ ..|.|++|+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng--~~~~Gr~l~ 143 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPK--RELHGQNPV 143 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTT--SCBTTBCCE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCC--CeECCEEeE
Confidence 457899999999999999999999999 788777743 3789999999999999999999998 799999874
No 162
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=2.8e-15 Score=98.99 Aligned_cols=68 Identities=21% Similarity=0.191 Sum_probs=60.6
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.+.++|||+|+ ++|+++|+++|++||.|..+.+. .++|||||+|+++++|++|++.|++ ..+.|++|+
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~-~~~g~afV~f~~~~~a~~Ai~~l~g--~~~~g~~l~ 80 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-PPRNCAFVTYEKMESADQAVAELNG--TQVESVQLK 80 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHTTT--EEETTEEEE
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec-CCCCEEEEEECCHHHHHHHHHHhCC--CeECCeEEE
Confidence 35679999995 89999999999999998888774 4799999999999999999999998 689998763
No 163
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.55 E-value=2.7e-15 Score=106.75 Aligned_cols=70 Identities=19% Similarity=0.206 Sum_probs=62.5
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
+.++|||+|||.++|+++|+++|++||.|..+.+.. .++|+|||+|.++++|++|++.+++ ..+.|++|+
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~--~~~~g~~l~ 76 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNG--ITVRNKRLK 76 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTT--CEETTEECE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCC--CEeCCcEEE
Confidence 357999999999999999999999999988887743 2679999999999999999999998 689998873
No 164
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.55 E-value=3.3e-15 Score=109.06 Aligned_cols=70 Identities=7% Similarity=0.072 Sum_probs=63.3
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeee-----ecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFA-----HNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~-----~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
+.++|+|+|||.++|+++|+++|++||.|..+.+..+ ++|+|||+|+++++|++|++.|+| ..++|++|+
T Consensus 113 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g~~l~ 187 (198)
T 2yh0_A 113 SAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNG--MQLGDKKLL 187 (198)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTT--CEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCC--CEECCEEEE
Confidence 4589999999999999999999999999988887543 589999999999999999999999 799999874
No 165
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.7e-15 Score=100.82 Aligned_cols=68 Identities=13% Similarity=0.147 Sum_probs=59.3
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKES 148 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i 148 (149)
.+.++|||+|||.++|+++|+++|++||.|..+.+.. .++|||||+|++.++|++|++. + ..++|++|
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~--~~~~g~~l 85 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--R--HMIDGRWC 85 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS--C--EEETTEEE
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc--C--CeeCCeEE
Confidence 4568999999999999999999999999998888754 3689999999999999999973 4 57888876
No 166
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.54 E-value=3.2e-15 Score=109.47 Aligned_cols=69 Identities=13% Similarity=0.197 Sum_probs=63.4
Q ss_pred eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.++|||+|||.++|+++|+++|++||.|..+.+.. .++|||||+|+++++|++|++.+++ ..++|++|+
T Consensus 88 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng--~~l~Gr~l~ 160 (177)
T 2f3j_A 88 GAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKG--VPLDGRPMD 160 (177)
T ss_dssp CEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTT--CBCSSSBCE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCC--CEECCEEEE
Confidence 58999999999999999999999999999888754 3689999999999999999999998 699999874
No 167
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.54 E-value=1.9e-15 Score=107.01 Aligned_cols=68 Identities=13% Similarity=0.193 Sum_probs=61.4
Q ss_pred eEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 80 CIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 80 ~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
|+|||+|||.++|+++|+++|++||.|..+.+.. .++|+|||+|.++++|++|++.+++ ..+.|++|+
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~--~~~~g~~i~ 72 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNG--KQIENNIVK 72 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTT--CEETTEECE
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCC--CccCCCeeE
Confidence 5899999999999999999999999988887743 3689999999999999999999998 689998763
No 168
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.54 E-value=3.8e-15 Score=109.29 Aligned_cols=69 Identities=12% Similarity=0.175 Sum_probs=64.0
Q ss_pred eeEEEeecCCC-CCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 79 RCIVILREIPD-STPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 79 ~~tl~v~~lp~-~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.++|||+|||. ++|+++|+++|++||.|..+.+..+.+|+|||+|.++++|++|++.+++ ..+.|++|+
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~--~~~~g~~l~ 72 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNG--HKLHGKPIR 72 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTT--CCCSSCCCE
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCC--CeecCeEEE
Confidence 47999999999 9999999999999999999888766799999999999999999999999 799999873
No 169
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.54 E-value=2.3e-15 Score=109.16 Aligned_cols=71 Identities=14% Similarity=0.069 Sum_probs=61.7
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-eecCeeEEEEeccHHHHHHHHHHHHHhhhhcC--ccCC
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-AHNNSWYITFENDEDAQKAYRYLREDVREFQN--KESK 149 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g--~~ik 149 (149)
..-.+|||+|||+.+|+++|+++|++||.|..|.+.. ..+|||||+|+++++|++|++.||| ..+.| ++|+
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG--~~i~g~g~~L~ 117 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDG--QNIYNACCTLR 117 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTT--BCSSSSCSCEE
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCC--CEecCCCcEEE
Confidence 3456799999999999999999999999999888743 3578999999999999999999999 68855 7653
No 170
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.54 E-value=2.2e-15 Score=108.34 Aligned_cols=98 Identities=15% Similarity=0.231 Sum_probs=75.8
Q ss_pred hhhhHHHHHHhhCCCcccccccccccCC--------CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeE
Q psy1630 49 KDIKLITEVLRESPNVQVDEEGIKVRPN--------HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWY 120 (149)
Q Consensus 49 ~d~~~i~~al~~S~~lev~~d~~~vrr~--------~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~af 120 (149)
.+.+....|++ .....+......|.+. .+.++|||+|||.++|+++|+++|++||.|..+.....++|+||
T Consensus 62 ~~~~~a~~A~~-l~g~~~~g~~l~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~af 140 (175)
T 1fje_B 62 ESAEDLEKALE-LTGLKVFGNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAY 140 (175)
T ss_dssp SSHHHHHHHHH-GGGEEETTEEEEEECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEECSSSSCCSEEE
T ss_pred CCHHHHHHHHh-cCCCEeCCeEEEEecCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEecCCCCCceEEE
Confidence 46678888884 3334444333333321 24679999999999999999999999998877722235799999
Q ss_pred EEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 121 ITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 121 VeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
|+|+++++|.+|++.|+| ..++|++|+
T Consensus 141 V~f~~~~~A~~A~~~l~g--~~~~g~~i~ 167 (175)
T 1fje_B 141 IEFKSEADAEKNLEEKQG--AEIDGRSVS 167 (175)
T ss_dssp EECSSHHHHHHHHHHHTE--EEETTEEEE
T ss_pred EEECCHHHHHHHHHHhCC--CEECCeEEE
Confidence 999999999999999998 799999873
No 171
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.53 E-value=9.7e-15 Score=100.68 Aligned_cols=67 Identities=21% Similarity=0.191 Sum_probs=60.9
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
+.++|||+|+ ++|+++|+++|++||.|..+.+. .++|||||+|++.++|++|++.|++ ..+.|++|+
T Consensus 38 ~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-~~kg~aFV~f~~~~~A~~Ai~~lng--~~~~g~~l~ 104 (121)
T 2bz2_A 38 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-PPRNCAFVTYEKMESADQAVAELNG--TQVESVQLK 104 (121)
T ss_dssp CCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-TTTTEEEEECSSHHHHHHHHHHHTT--CBCSSCBCE
T ss_pred CCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-CCCCEEEEEECCHHHHHHHHHHhCC--CEECCeEEE
Confidence 5689999995 69999999999999999988875 4799999999999999999999999 689999874
No 172
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=3.2e-15 Score=101.68 Aligned_cols=58 Identities=12% Similarity=0.128 Sum_probs=51.4
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee--------eecCeeEEEEeccHHHHHHHHHH
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF--------AHNNSWYITFENDEDAQKAYRYL 136 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~kg~afVeF~~~e~A~~Ai~~l 136 (149)
..++|||+|||+++|+++|+++|++||.|. +.+.. .++|||||+|+++++|++|++.+
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~ 72 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC 72 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh
Confidence 457899999999999999999999999988 54421 46899999999999999999887
No 173
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=8.3e-15 Score=94.92 Aligned_cols=67 Identities=15% Similarity=0.072 Sum_probs=56.1
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKES 148 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i 148 (149)
+.++|||+|||+++|+++|+++|++||.|..+.+..+++|||||+|+++++|++| ++....+.|++|
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~----~~~~~~~~g~~l 70 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSL----CGEDLIIKGISV 70 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHT----TTCEEEETTEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHH----hcCCceeCCEEE
Confidence 4579999999999999999999999999999988777899999999999999865 332133466554
No 174
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.52 E-value=1.7e-14 Score=103.02 Aligned_cols=70 Identities=14% Similarity=0.110 Sum_probs=61.3
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeee----ecCeeEEEEeccHHHHHHHHHHHHHhhhhc---CccCC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFA----HNNSWYITFENDEDAQKAYRYLREDVREFQ---NKESK 149 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~----~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~---g~~ik 149 (149)
+.++|||+|||.++|+++|+++|++||.|..+.+..+ ++|+|||+|+++++|++|++.||| ..+. |++|+
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g--~~~~~g~~~~l~ 170 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQ--AQTMEGCSSPMV 170 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTT--SCCCTTCSSCCE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcC--CcccCCCCCCeE
Confidence 5689999999999999999999999999988887543 689999999999999999999998 4554 37763
No 175
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.52 E-value=7.2e-15 Score=104.58 Aligned_cols=124 Identities=10% Similarity=0.129 Sum_probs=86.0
Q ss_pred hhhhhhcCCCcee-eeEEeech--hhhhhh----chhhhHHHHHHhhCCCcccccccccccCC------CceeEEEeecC
Q psy1630 21 AYLLSQMDNDQYV-PIWTVANF--NQVKKL----TKDIKLITEVLRESPNVQVDEEGIKVRPN------HKRCIVILREI 87 (149)
Q Consensus 21 ~~l~~~~~~~g~v-pi~~~~~F--~kvk~l----~~d~~~i~~al~~S~~lev~~d~~~vrr~------~~~~tl~v~~l 87 (149)
.-|++.+..-|-| .+.++..- .+-+.+ -.+.+....|++.. ..++.....+.+. .+.++|||+||
T Consensus 18 ~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~--~~~~g~~i~v~~~~~~~~~~~~~~l~V~nl 95 (167)
T 2cjk_A 18 DNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQ--HILDGKVIDPKRAIPRDEQDKTGKIFVGGI 95 (167)
T ss_dssp HHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHSC--CEETTEECCCEECCCHHHHHHCEEEEEEEE
T ss_pred HHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhcc--cccCCeEcccccccchhhccCCCeEEECCC
Confidence 4566666666643 34333221 111111 24677888888852 2333322333322 24679999999
Q ss_pred CCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 88 PDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 88 p~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
|.++|+++|+++|++||.|..+.+.. .++|+|||+|+++++|++|++ +++ ..++|++|+
T Consensus 96 p~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~--~~~~g~~i~ 159 (167)
T 2cjk_A 96 GPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKF--IDFKDRKIE 159 (167)
T ss_dssp CTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSE--ECSSSSCEE
T ss_pred CCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCC--EEeCCeEEE
Confidence 99999999999999999999888743 367999999999999999997 666 799999874
No 176
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.51 E-value=9.9e-15 Score=106.36 Aligned_cols=125 Identities=10% Similarity=0.130 Sum_probs=86.2
Q ss_pred hhhhhhcCCCcee-eeEEeechh--hhhhh----chhhhHHHHHHhhCCCcccccccccccCC------------CceeE
Q psy1630 21 AYLLSQMDNDQYV-PIWTVANFN--QVKKL----TKDIKLITEVLRESPNVQVDEEGIKVRPN------------HKRCI 81 (149)
Q Consensus 21 ~~l~~~~~~~g~v-pi~~~~~F~--kvk~l----~~d~~~i~~al~~S~~lev~~d~~~vrr~------------~~~~t 81 (149)
.-|++.+..-|-| .+.++..-. +-+.+ -.+.+....|+.. ....+......|.+. ...++
T Consensus 28 ~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~ 106 (196)
T 1l3k_A 28 ESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKK 106 (196)
T ss_dssp HHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEECCC-----------CCSE
T ss_pred HHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecccCcccccccccCCCcce
Confidence 4466666655543 444443211 11111 2467888888876 333443333333211 13478
Q ss_pred EEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 82 VILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 82 l~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
|||+|||.++|+++|+++|++||.|..+.+.. .++|||||+|+++++|.+|++. ++ ..++|++|+
T Consensus 107 l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~--~~~~G~~i~ 176 (196)
T 1l3k_A 107 IFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KY--HTVNGHNCE 176 (196)
T ss_dssp EEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SC--CEETTEECE
T ss_pred EEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CC--cEECCEEEE
Confidence 99999999999999999999999998888754 2689999999999999999976 55 689998873
No 177
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.51 E-value=1.4e-14 Score=103.56 Aligned_cols=65 Identities=15% Similarity=0.202 Sum_probs=57.7
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-------eecCeeEEEEeccHHHHHHHHHHHHHhhhhc
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-------AHNNSWYITFENDEDAQKAYRYLREDVREFQ 144 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-------~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~ 144 (149)
+.++|||+|||.++|+++|+++|++||.|..+.+.. .++|+|||+|.++++|++|++.+++ ..+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~--~~~~ 73 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHN--MKVL 73 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTT--TCCC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcC--cEEc
Confidence 458999999999999999999999999998887743 4689999999999999999999988 4554
No 178
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.51 E-value=5.1e-15 Score=111.65 Aligned_cols=71 Identities=11% Similarity=0.161 Sum_probs=65.1
Q ss_pred CceeEEEeecCCC-CCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 77 HKRCIVILREIPD-STPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 77 ~~~~tl~v~~lp~-~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.+.++|||+|||. ++|+++|+++|++||.|..+.+..+.+|||||+|.++++|++|++.+++ ..+.|++|+
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g--~~~~g~~l~ 103 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNG--HKLHGKPIR 103 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTT--CBCSSSBCE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCC--CeECCeEEE
Confidence 3568999999999 9999999999999999988888776789999999999999999999999 799999873
No 179
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.50 E-value=2.8e-14 Score=107.55 Aligned_cols=69 Identities=20% Similarity=0.231 Sum_probs=63.0
Q ss_pred eeEEEeecCCCCCcHHHHHhhhCCCC-CCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhc-CccCC
Q psy1630 79 RCIVILREIPDSTPLEEIRGLFSGKS-CPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQ-NKESK 149 (149)
Q Consensus 79 ~~tl~v~~lp~~~t~~~l~~~F~~~G-~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~-g~~ik 149 (149)
.++|||+|||.++|+++|+++|++|| .|..+.+-...+|+|||+|++.++|.+|++.|+| ..+. |++|+
T Consensus 151 ~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~g~afV~f~~~~~A~~Ai~~l~g--~~~~~g~~l~ 221 (229)
T 2adc_A 151 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHN--HDLGENHHLR 221 (229)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSSTTCEEEEESSHHHHHHHHHHHTT--CBSSSSCBCE
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECCCcEEEEEECCHHHHHHHHHHHCC--CccCCCCeEE
Confidence 57899999999999999999999999 8888887445789999999999999999999999 7898 88874
No 180
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.50 E-value=9.9e-15 Score=107.87 Aligned_cols=70 Identities=19% Similarity=0.154 Sum_probs=62.1
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
+.++|||+|||.++|+++|+++|++||.|..+.+.. .++|||||+|.++++|++|++.+++ ..+.|++|+
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~--~~~~g~~l~ 101 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNS--VMLGGRNIK 101 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSS--CCCC-CCCE
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccC--CeeCCeeEE
Confidence 457999999999999999999999999988888743 3689999999999999999999998 689998873
No 181
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.50 E-value=3.3e-14 Score=109.17 Aligned_cols=98 Identities=11% Similarity=0.105 Sum_probs=79.9
Q ss_pred hhhhHHHHHHhhCCCcccccccccccCCCceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeee----ecCeeEEEEe
Q psy1630 49 KDIKLITEVLRESPNVQVDEEGIKVRPNHKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFA----HNNSWYITFE 124 (149)
Q Consensus 49 ~d~~~i~~al~~S~~lev~~d~~~vrr~~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~----~kg~afVeF~ 124 (149)
.+.+....|+.......+......|....+.++|||+|||..+|+++|+++|++||.|..+.+..+ ++|+|||+|+
T Consensus 66 ~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~ 145 (261)
T 3sde_A 66 ESRTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFA 145 (261)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEEECCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEES
T ss_pred CCHHHHHHHHHHcCCcEECCceeEeeecccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeC
Confidence 466778888876555556555556666667789999999999999999999999999988887543 6899999999
Q ss_pred ccHHHHHHHHHHHHHhhhhc----CccC
Q psy1630 125 NDEDAQKAYRYLREDVREFQ----NKES 148 (149)
Q Consensus 125 ~~e~A~~Ai~~l~~~~~~~~----g~~i 148 (149)
+.++|.+|+..+++ ..+- |++|
T Consensus 146 ~~~~A~~A~~~l~~--~~~~~~~~~r~i 171 (261)
T 3sde_A 146 AKPPARKALERCGD--GAFLLTTTPRPV 171 (261)
T ss_dssp SHHHHHHHHHHHHH--SCEESSSSCCBC
T ss_pred CHHHHHHHHHHhcC--CeEEecCCCceE
Confidence 99999999999976 4554 6665
No 182
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.50 E-value=2.4e-14 Score=105.00 Aligned_cols=69 Identities=20% Similarity=0.231 Sum_probs=63.4
Q ss_pred eeEEEeecCCCCCcHHHHHhhhCCCC-CCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhc-CccCC
Q psy1630 79 RCIVILREIPDSTPLEEIRGLFSGKS-CPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQ-NKESK 149 (149)
Q Consensus 79 ~~tl~v~~lp~~~t~~~l~~~F~~~G-~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~-g~~ik 149 (149)
.++|+|+|||.++|+++|+++|++|| .|..+++-...+|+|||+|++.++|.+|++.|+| ..+. |++|+
T Consensus 120 ~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~~~g~~l~ 190 (198)
T 1qm9_A 120 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHN--HDLGENHHLR 190 (198)
T ss_dssp CCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSSCEEEECSSHHHHHHHHHHHTS--SCCSSCCSCC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhcC--CccCCCCeEE
Confidence 67899999999999999999999999 9998888445689999999999999999999999 7888 88875
No 183
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.49 E-value=1.7e-14 Score=111.39 Aligned_cols=128 Identities=9% Similarity=0.097 Sum_probs=96.8
Q ss_pred cccch---hhhhhhcCCCceeeeEEeechhhhhhh----chhhhHHHHHHhhCCCcccccccccccCCCceeEEEeecCC
Q psy1630 16 NLAND---AYLLSQMDNDQYVPIWTVANFNQVKKL----TKDIKLITEVLRESPNVQVDEEGIKVRPNHKRCIVILREIP 88 (149)
Q Consensus 16 Nl~~d---~~l~~~~~~~g~vpi~~~~~F~kvk~l----~~d~~~i~~al~~S~~lev~~d~~~vrr~~~~~tl~v~~lp 88 (149)
||+.+ .-|++.+..-|-+.+.+ .+-+.+ -.+.+....|+.......+......|......++|||+|||
T Consensus 29 nLp~~~te~~l~~~F~~~Gi~~~~~----~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~l~v~nlp 104 (284)
T 3smz_A 29 GLPGDVTNQEVHDLLSDYELKYCFV----DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPTDALLCVANLP 104 (284)
T ss_dssp CCCTTCCHHHHHHHTTTSCEEEEEE----ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCSCEEEEESCC
T ss_pred CCCCCCCHHHHHHHHHHcCCEEEEE----ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecCCCCEEEEcCCC
Confidence 55443 45677777777333333 222222 34678888888765555566555566666677899999999
Q ss_pred CCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 89 DSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 89 ~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.++|+++|+++|++||.|..+.+.. .++|+|||+|.++++|.+|++.+++ ..+.|++|+
T Consensus 105 ~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~--~~~~g~~i~ 168 (284)
T 3smz_A 105 PSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLG--KPLGPRTLY 168 (284)
T ss_dssp TTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT--CEETTEECE
T ss_pred CcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCC--CEeCCcEEE
Confidence 9999999999999999988887643 2689999999999999999999998 799998873
No 184
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.47 E-value=2.8e-14 Score=101.50 Aligned_cols=68 Identities=10% Similarity=0.170 Sum_probs=58.7
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
+.++|||+|||.++|+++|+++|++||.|..+.+.. .++|||||+|+++++|++|++. + ..++|++|+
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~--~~~~g~~i~ 74 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--Q--HILDGKVID 74 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--C--CEETTEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--c--cccCCeEcc
Confidence 357999999999999999999999999988887743 3689999999999999999973 3 578887763
No 185
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.47 E-value=5e-14 Score=116.11 Aligned_cols=70 Identities=13% Similarity=0.192 Sum_probs=63.4
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
+.++|||+|||..+|+++|+++|++||.|..|.+.. .++|||||+|+++++|++||+.||| ..|.|++|+
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng--~~i~gr~i~ 175 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADG--KKIDGRRVL 175 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCC--CEECCEEEE
Confidence 457999999999999999999999999999888753 3689999999999999999999999 699998874
No 186
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.46 E-value=5.4e-14 Score=108.52 Aligned_cols=99 Identities=9% Similarity=0.063 Sum_probs=78.0
Q ss_pred hhhhHHHHHHhhCCCcccccccccccC---------CCceeEEEeecCCCCC-cHHHHHhhhCCCCCCceeeeeee----
Q psy1630 49 KDIKLITEVLRESPNVQVDEEGIKVRP---------NHKRCIVILREIPDST-PLEEIRGLFSGKSCPRFISCEFA---- 114 (149)
Q Consensus 49 ~d~~~i~~al~~S~~lev~~d~~~vrr---------~~~~~tl~v~~lp~~~-t~~~l~~~F~~~G~v~~v~~~~~---- 114 (149)
.+.+....|++......+......|.. ..+.++|||+|||.++ |+++|+++|++||.|..+.+..+
T Consensus 145 ~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~ 224 (284)
T 3smz_A 145 MKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQ 224 (284)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEEECCGGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCC
T ss_pred CCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCC
Confidence 456777778765544444433333321 1246799999999995 99999999999999998887543
Q ss_pred ecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 115 HNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 115 ~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
++|+|||+|+++++|.+|++.|+| ..+.|++|+
T Consensus 225 ~~g~afV~f~~~~~A~~A~~~l~g--~~~~g~~l~ 257 (284)
T 3smz_A 225 LKGFAVLEYETAEMAEEAQQQADG--LSLGGSHLR 257 (284)
T ss_dssp EEEEEEEECSSHHHHHHHHHHHTT--CEETTEECE
T ss_pred cccEEEEEeCCHHHHHHHHHHhCC--CccCCeEEE
Confidence 689999999999999999999999 799999874
No 187
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.46 E-value=2.8e-14 Score=109.62 Aligned_cols=69 Identities=17% Similarity=0.262 Sum_probs=63.3
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
+.++|||+|||.++|+++|+++|++||.|..+.+.. .+|||||+|.++++|++|+..+++ ..+.|++|+
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~-~kg~afV~f~~~~~A~~A~~~l~g--~~i~g~~l~ 89 (261)
T 3sde_A 21 QRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR-DRGFGFIRLESRTLAEIAKAELDG--TILKSRPLR 89 (261)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET-TTTEEEEECSSHHHHHHHHHHHTT--CEETTEECE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC-CCcEEEEEECCHHHHHHHHHHcCC--cEECCceeE
Confidence 568999999999999999999999999999888754 689999999999999999999998 689998873
No 188
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.46 E-value=1.6e-14 Score=105.19 Aligned_cols=68 Identities=12% Similarity=0.077 Sum_probs=59.8
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFENDEDAQKAYRYLREDVREFQNKES 148 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~i 148 (149)
+.++|||+|||+++|+++|+++|++||.|..+.+.. .++|||||+|.++++|++|++. ++ ..+.|++|
T Consensus 12 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~--~~~~g~~l 84 (196)
T 1l3k_A 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RP--HKVDGRVV 84 (196)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CS--CEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CC--CEECCEEe
Confidence 467999999999999999999999999988887754 2689999999999999999976 55 68888876
No 189
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.46 E-value=2.9e-14 Score=109.93 Aligned_cols=70 Identities=19% Similarity=0.214 Sum_probs=64.2
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhc-CccCC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQ-NKESK 149 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~-g~~ik 149 (149)
+.++|||+|||.++|+++|+++|++||.|..+++..+.+|+|||+|++.++|.+|++.|+| ..+. |++|+
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~~~g~~l~ 276 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQG--FKITQNNAMK 276 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCCCcEEEEEeCCHHHHHHHHHHcCC--cEeCCCCEEE
Confidence 4578999999999999999999999999999888766679999999999999999999999 6888 98874
No 190
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.46 E-value=3.1e-14 Score=96.00 Aligned_cols=70 Identities=20% Similarity=0.091 Sum_probs=59.8
Q ss_pred ceeEEEeecCCC-----CCcHHHHHhhhCCCCCCceeeeee------eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCc
Q psy1630 78 KRCIVILREIPD-----STPLEEIRGLFSGKSCPRFISCEF------AHNNSWYITFENDEDAQKAYRYLREDVREFQNK 146 (149)
Q Consensus 78 ~~~tl~v~~lp~-----~~t~~~l~~~F~~~G~v~~v~~~~------~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~ 146 (149)
+.++|++.|+.. +.++++|++.|++||.|..+.+.. .++|+|||+|+++++|++|++.||| +.|+||
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG--~~~~Gr 84 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNG--RYFGGR 84 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTT--CEETTE
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCC--CEECCc
Confidence 457899999963 237899999999999999888754 2589999999999999999999999 799999
Q ss_pred cCC
Q psy1630 147 ESK 149 (149)
Q Consensus 147 ~ik 149 (149)
+|+
T Consensus 85 ~i~ 87 (105)
T 2pe8_A 85 VVK 87 (105)
T ss_dssp ECE
T ss_pred EEE
Confidence 874
No 191
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.46 E-value=3.9e-14 Score=109.18 Aligned_cols=70 Identities=14% Similarity=0.207 Sum_probs=62.9
Q ss_pred ceeEEEeecCCCCCcHHHHH----hhhCCCCCCceeeeee--eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 78 KRCIVILREIPDSTPLEEIR----GLFSGKSCPRFISCEF--AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~----~~F~~~G~v~~v~~~~--~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
+.++|||+|||.++|+++|+ ++|++||.|..+.+.. .++|||||+|++.++|++|++.+++ ..+.|++|+
T Consensus 8 ~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g~~l~ 83 (282)
T 3pgw_A 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQG--FPFYDKPMR 83 (282)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcC--CeeCCcEEE
Confidence 46899999999999999977 8999999998887743 4789999999999999999999999 799998874
No 192
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.45 E-value=3.4e-14 Score=108.76 Aligned_cols=68 Identities=16% Similarity=0.119 Sum_probs=62.0
Q ss_pred ceeEEEeecCCCCC---------cHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhh-----
Q psy1630 78 KRCIVILREIPDST---------PLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREF----- 143 (149)
Q Consensus 78 ~~~tl~v~~lp~~~---------t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~----- 143 (149)
..+||||+|||..+ ++++|+++|++||.|..|++.. .+|||||+|++.++|+.|++.|++ ..+
T Consensus 133 ~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~-~kG~AFV~F~~~~~Ae~A~~am~g--~~l~~~~~ 209 (240)
T 3u1l_A 133 KNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE-SKNCGFVKFKYQANAEFAKEAMSN--QTLLLPSD 209 (240)
T ss_dssp CCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG-GGTEEEEEESSHHHHHHHHHHHTT--CCCCCTTS
T ss_pred CCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC-CCCEEEEEeCCHHHHHHHHHHhCC--CEEecccc
Confidence 46899999999988 7999999999999999888754 799999999999999999999999 688
Q ss_pred -------cCccC
Q psy1630 144 -------QNKES 148 (149)
Q Consensus 144 -------~g~~i 148 (149)
.|++|
T Consensus 210 ~e~~~~~~gr~L 221 (240)
T 3u1l_A 210 KEWDDRREGTGL 221 (240)
T ss_dssp TTGGGGGGSCCC
T ss_pred ccccccCCCCEE
Confidence 78876
No 193
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.43 E-value=3.6e-14 Score=98.96 Aligned_cols=68 Identities=12% Similarity=0.047 Sum_probs=56.9
Q ss_pred eEEEeecC----CCCCcHHHHHhhhCCCCCCceeeeee-----eecCeeEEEEec----cHH----HHHHHH--HHHHHh
Q psy1630 80 CIVILREI----PDSTPLEEIRGLFSGKSCPRFISCEF-----AHNNSWYITFEN----DED----AQKAYR--YLREDV 140 (149)
Q Consensus 80 ~tl~v~~l----p~~~t~~~l~~~F~~~G~v~~v~~~~-----~~kg~afVeF~~----~e~----A~~Ai~--~l~~~~ 140 (149)
..|||+|| |+.+++++|+++|++||+|..+.+.. .++|||||+|.+ +++ |.+|+. .++|
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng-- 80 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSG-- 80 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTC--
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcC--
Confidence 47999999 99999999999999999999888754 379999999996 444 788887 5676
Q ss_pred hhhcCccCC
Q psy1630 141 REFQNKESK 149 (149)
Q Consensus 141 ~~~~g~~ik 149 (149)
..++|++|+
T Consensus 81 ~~I~Gr~ir 89 (136)
T 2j8a_A 81 CFIMGFKFE 89 (136)
T ss_dssp EEETTEEEE
T ss_pred CeecCcEEE
Confidence 799999874
No 194
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=1.1e-13 Score=93.79 Aligned_cols=71 Identities=17% Similarity=0.157 Sum_probs=60.4
Q ss_pred CceeEEEeecCCCCCc-----------HHHHHhhhCCCCCCceeeee-eeecCeeEEEEeccHHHHHHHHHHHHHhhhhc
Q psy1630 77 HKRCIVILREIPDSTP-----------LEEIRGLFSGKSCPRFISCE-FAHNNSWYITFENDEDAQKAYRYLREDVREFQ 144 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t-----------~~~l~~~F~~~G~v~~v~~~-~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~ 144 (149)
.+.++|++.|+....+ +++|+++|++||.|..+.+. ..++|||||+|+++++|++|++.||| ..|+
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng--~~~~ 90 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDG--RWFG 90 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTT--CEET
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCC--CEEC
Confidence 4568999999954432 68999999999999988763 24799999999999999999999999 7999
Q ss_pred CccCC
Q psy1630 145 NKESK 149 (149)
Q Consensus 145 g~~ik 149 (149)
||+|+
T Consensus 91 gr~l~ 95 (112)
T 2dit_A 91 GRQIT 95 (112)
T ss_dssp TEECE
T ss_pred CcEEE
Confidence 99874
No 195
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.42 E-value=2.5e-14 Score=102.19 Aligned_cols=68 Identities=15% Similarity=0.207 Sum_probs=56.9
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCC----CC-------CceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCc
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGK----SC-------PRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNK 146 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~----G~-------v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~ 146 (149)
+.++|||+|||.++|+++|+++|++| |. +..+.+. .++|+|||+|.++++|++|+ .+++ ..+.|+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~-~~~g~afV~f~~~~~A~~A~-~~~~--~~~~g~ 78 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-QDKNFAFLEFRSVDETTQAM-AFDG--IIFQGQ 78 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE-TTTTEEEEEESSHHHHHHHG-GGTT--CEETTE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec-CCCCEEEEEeCCHHHHHHHH-HhCC--cEecCc
Confidence 45799999999999999999999999 62 2333332 36999999999999999999 7888 689998
Q ss_pred cCC
Q psy1630 147 ESK 149 (149)
Q Consensus 147 ~ik 149 (149)
+|+
T Consensus 79 ~i~ 81 (172)
T 2g4b_A 79 SLK 81 (172)
T ss_dssp ECE
T ss_pred eee
Confidence 873
No 196
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.40 E-value=1.1e-13 Score=103.25 Aligned_cols=67 Identities=10% Similarity=0.149 Sum_probs=58.6
Q ss_pred eeEEEeecCCCCCcHHHHHhhhCCCCCC--ceeeeee---eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCcc
Q psy1630 79 RCIVILREIPDSTPLEEIRGLFSGKSCP--RFISCEF---AHNNSWYITFENDEDAQKAYRYLREDVREFQNKE 147 (149)
Q Consensus 79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v--~~v~~~~---~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ 147 (149)
.++|||+|||+++|+++|+++|++||.| ..+.+.. ..+|+|||+|++.++|.+|+..||| .++.|+.
T Consensus 123 ~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng--~~~~g~~ 194 (205)
T 3tyt_A 123 SNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNH--YQMKNPN 194 (205)
T ss_dssp CSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTT--CEECCSS
T ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCC--CCccCCC
Confidence 4689999999999999999999999998 6666532 2469999999999999999999999 6888874
No 197
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.39 E-value=2.7e-13 Score=104.90 Aligned_cols=97 Identities=16% Similarity=0.164 Sum_probs=77.5
Q ss_pred hhhhHHHHHHhhCCCcccccccccccCCCceeEEEeecCCCCCcHHHHHhhhCCCC-CCceeeeee----eecCeeEEEE
Q psy1630 49 KDIKLITEVLRESPNVQVDEEGIKVRPNHKRCIVILREIPDSTPLEEIRGLFSGKS-CPRFISCEF----AHNNSWYITF 123 (149)
Q Consensus 49 ~d~~~i~~al~~S~~lev~~d~~~vrr~~~~~tl~v~~lp~~~t~~~l~~~F~~~G-~v~~v~~~~----~~kg~afVeF 123 (149)
.+.+....|++ .....+......|.+ .+.++|||+|||.++|+++|+++|++|| .|..+.+.. .++|||||+|
T Consensus 89 ~~~~~A~~A~~-~~~~~~~g~~i~v~~-~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f 166 (292)
T 2ghp_A 89 ARYDGALAAIT-KTHKVVGQNEIIVSH-LTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDV 166 (292)
T ss_dssp SSHHHHHHHHT-TTTCEETTEECEEEE-CCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEEC
T ss_pred CCHHHHHHHHH-hCCcEeCCcEEEEEE-CCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEE
Confidence 46788888885 444555444444443 3567999999999999999999999999 999888743 3789999999
Q ss_pred eccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 124 ENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 124 ~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.++++|++|++.|++ ..+.|++|+
T Consensus 167 ~~~~~a~~A~~~l~g--~~~~g~~l~ 190 (292)
T 2ghp_A 167 TSKEDARYCVEKLNG--LKIEGYTLV 190 (292)
T ss_dssp SSHHHHHHHHHHHTT--CEETTEECE
T ss_pred CCHHHHHHHHHHhCC--CEeCCcEEE
Confidence 999999999999998 789998773
No 198
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.39 E-value=5.9e-14 Score=102.37 Aligned_cols=67 Identities=15% Similarity=0.189 Sum_probs=55.9
Q ss_pred eeEEEeecCCCCCcHHHHHhhhCCC----CC-------CceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCcc
Q psy1630 79 RCIVILREIPDSTPLEEIRGLFSGK----SC-------PRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKE 147 (149)
Q Consensus 79 ~~tl~v~~lp~~~t~~~l~~~F~~~----G~-------v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ 147 (149)
.++|||+|||+++|+++|+++|++| |. +..+.+ ..++|||||+|.++++|++|+ .+++ ..+.|++
T Consensus 4 ~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~-~~~~g~afV~F~~~~~A~~Al-~l~g--~~~~g~~ 79 (198)
T 2yh0_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-NQDKNFAFLEFRSVDETTQAM-AFDG--IIFQGQS 79 (198)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE-ETTTTEEEEEESCSHHHHHHG-GGTT--EEETTEE
T ss_pred eeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe-cCCCCEEEEEeCCHHHHHHHH-HhcC--CEEcCce
Confidence 4799999999999999999999999 42 222222 237999999999999999999 7888 6899987
Q ss_pred CC
Q psy1630 148 SK 149 (149)
Q Consensus 148 ik 149 (149)
|+
T Consensus 80 i~ 81 (198)
T 2yh0_A 80 LK 81 (198)
T ss_dssp EE
T ss_pred EE
Confidence 63
No 199
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.38 E-value=1.1e-13 Score=107.25 Aligned_cols=70 Identities=13% Similarity=0.092 Sum_probs=60.5
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeee---ecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFA---HNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~---~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.+.++|||+|||.++|+++|+++|++||.|..+.+..+ .+|+|||+|.++++|++|++ +++ ..+.|++|+
T Consensus 39 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~--~~~~g~~i~ 111 (292)
T 2ghp_A 39 RELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTH--KVVGQNEII 111 (292)
T ss_dssp ---CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTT--CEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCC--cEeCCcEEE
Confidence 46789999999999999999999999999988887542 58999999999999999995 777 799998873
No 200
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.37 E-value=1.8e-13 Score=92.17 Aligned_cols=70 Identities=21% Similarity=0.256 Sum_probs=58.1
Q ss_pred ceeEEEeecC--CCCC--------cHHHHHhhhCCCCCCceeeeeee-------ecCeeEEEEeccHHHHHHHHHHHHHh
Q psy1630 78 KRCIVILREI--PDST--------PLEEIRGLFSGKSCPRFISCEFA-------HNNSWYITFENDEDAQKAYRYLREDV 140 (149)
Q Consensus 78 ~~~tl~v~~l--p~~~--------t~~~l~~~F~~~G~v~~v~~~~~-------~kg~afVeF~~~e~A~~Ai~~l~~~~ 140 (149)
+.+.|.+.|+ |.+. ..++|++.|++||.|..+.+..+ ++|+|||+|+++++|++|++.|||
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG-- 81 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG-- 81 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT--
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC--
Confidence 3456788887 3333 35789999999999998888542 579999999999999999999999
Q ss_pred hhhcCccCC
Q psy1630 141 REFQNKESK 149 (149)
Q Consensus 141 ~~~~g~~ik 149 (149)
+.|+||+|+
T Consensus 82 ~~f~GR~i~ 90 (105)
T 3v4m_A 82 RKFANRVVV 90 (105)
T ss_dssp CEETTEECE
T ss_pred CEeCCCEEE
Confidence 799999874
No 201
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.37 E-value=5e-14 Score=101.15 Aligned_cols=70 Identities=17% Similarity=0.171 Sum_probs=58.3
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeee----eeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCE----FAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~----~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.+.++|||+|||.++|+++|+++|+++|.+..+.+. ..++|||||+|+++++|++|+ .+++ ..+.|++|+
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g--~~~~g~~l~ 84 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTG--LKVFGNEIK 84 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGG--EEETTEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCC--CEeCCeEEE
Confidence 457899999999999999999999999865432221 237899999999999999999 4888 799998763
No 202
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.35 E-value=4.8e-14 Score=94.84 Aligned_cols=64 Identities=17% Similarity=0.167 Sum_probs=53.6
Q ss_pred eecCCCCCcHHHHHhhh------------CCCCCCceeeeeee----ecCeeEEEEeccHHHHHHHHHHHHHhhhhcCcc
Q psy1630 84 LREIPDSTPLEEIRGLF------------SGKSCPRFISCEFA----HNNSWYITFENDEDAQKAYRYLREDVREFQNKE 147 (149)
Q Consensus 84 v~~lp~~~t~~~l~~~F------------~~~G~v~~v~~~~~----~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ 147 (149)
+.|||+.+++++|++.| ++||.|..+.+..+ ++|||||+|+++++|++|++.||| +.|+||+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng--~~~~Gr~ 97 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNN--RWFNGQP 97 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTT--CEETTEE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCC--CEECCEE
Confidence 45666677777776666 99999998888543 589999999999999999999999 7999999
Q ss_pred CC
Q psy1630 148 SK 149 (149)
Q Consensus 148 ik 149 (149)
|+
T Consensus 98 i~ 99 (104)
T 1jmt_A 98 IH 99 (104)
T ss_dssp CC
T ss_pred EE
Confidence 85
No 203
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.32 E-value=1.2e-12 Score=89.93 Aligned_cols=70 Identities=13% Similarity=0.133 Sum_probs=58.7
Q ss_pred ceeEEEeecCC--CC---CcHHHHHhhhCCCCCCceeeeeee---------ecCeeEEEEeccHHHHHHHHHHHHHhhhh
Q psy1630 78 KRCIVILREIP--DS---TPLEEIRGLFSGKSCPRFISCEFA---------HNNSWYITFENDEDAQKAYRYLREDVREF 143 (149)
Q Consensus 78 ~~~tl~v~~lp--~~---~t~~~l~~~F~~~G~v~~v~~~~~---------~kg~afVeF~~~e~A~~Ai~~l~~~~~~~ 143 (149)
+.++|++.|+- .+ -.+++|++.|++||.|..+.+..+ .+|++||+|+++++|++|++.||| +.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnG--r~f 96 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNG--RWF 96 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTT--CEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCC--CEE
Confidence 56788899883 22 247899999999999998887542 359999999999999999999999 799
Q ss_pred cCccCC
Q psy1630 144 QNKESK 149 (149)
Q Consensus 144 ~g~~ik 149 (149)
+||+|+
T Consensus 97 ~GR~i~ 102 (118)
T 3ue2_A 97 AGRKVV 102 (118)
T ss_dssp TTEECE
T ss_pred CCcEEE
Confidence 999874
No 204
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.31 E-value=7e-13 Score=106.29 Aligned_cols=64 Identities=8% Similarity=0.145 Sum_probs=57.3
Q ss_pred CceeEEEeec--CCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhh
Q psy1630 77 HKRCIVILRE--IPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREF 143 (149)
Q Consensus 77 ~~~~tl~v~~--lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~ 143 (149)
.+.++|||+| |+..+|+++|+++|++||.|..|.+.. .||||||+|++.++|++|++.||| +++
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-~kgfaFV~f~~~~~A~~Ai~~lnG--~~~ 81 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-NKPYSFARYRTTEESKRAYVTLNG--KEV 81 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-TCSEEEEEESSHHHHHHHHHHTTT--CEE
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCC--Ccc
Confidence 4567899998 578999999999999999998887754 789999999999999999999999 555
No 205
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=1.5e-12 Score=87.04 Aligned_cols=57 Identities=9% Similarity=-0.025 Sum_probs=49.6
Q ss_pred CCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 89 DSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 89 ~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
..+|+++|+++|++||.|..+.+...++|||||+|+++++|++|++.+ ..+.|++|+
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~----~~~~g~~l~ 83 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNE----VGLVDNPLK 83 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTC----CBCSSSBCE
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhc----CCCCCCeEE
Confidence 568999999999999999998887678999999999999999999863 356788763
No 206
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.26 E-value=2.1e-12 Score=88.24 Aligned_cols=69 Identities=14% Similarity=0.098 Sum_probs=56.5
Q ss_pred eeEEEeecC--CCC--------CcHHHHHhhhCCCCCCceeeeeee-ecCeeEEEEeccHHHHHHHHHHHHHhhhhcCcc
Q psy1630 79 RCIVILREI--PDS--------TPLEEIRGLFSGKSCPRFISCEFA-HNNSWYITFENDEDAQKAYRYLREDVREFQNKE 147 (149)
Q Consensus 79 ~~tl~v~~l--p~~--------~t~~~l~~~F~~~G~v~~v~~~~~-~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ 147 (149)
.+.|.+.|+ |.+ -.+++|++.|++||.|..+.+.+. .+|+|||+|+++++|++|++.||| +.|+||+
T Consensus 7 s~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG--~~f~GR~ 84 (114)
T 3s6e_A 7 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHG--RWFAGKM 84 (114)
T ss_dssp CSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTT--CEETTEE
T ss_pred CcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCC--CEECCEE
Confidence 345777776 222 135689999999999999888654 589999999999999999999999 7999998
Q ss_pred CC
Q psy1630 148 SK 149 (149)
Q Consensus 148 ik 149 (149)
|+
T Consensus 85 i~ 86 (114)
T 3s6e_A 85 IT 86 (114)
T ss_dssp CE
T ss_pred EE
Confidence 74
No 207
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.21 E-value=7.5e-12 Score=86.37 Aligned_cols=70 Identities=20% Similarity=0.222 Sum_probs=59.8
Q ss_pred ceeEEEeecCCCC-CcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEec-cHHHHHHHHHHHHHhhhhcCccC
Q psy1630 78 KRCIVILREIPDS-TPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFEN-DEDAQKAYRYLREDVREFQNKES 148 (149)
Q Consensus 78 ~~~tl~v~~lp~~-~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~-~e~A~~Ai~~l~~~~~~~~g~~i 148 (149)
+.+.|+|+|+|.+ ++.++|+++|++||.|.+|.+..+.. .|||+|.+ +++|.+|++.++..+.+++|..+
T Consensus 17 ~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~-tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK-EGIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp CCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS-EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred CCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC-EEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 5688999999999 99999999999999999998865433 69999999 79999999998765567777543
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.74 E-value=6e-09 Score=77.79 Aligned_cols=57 Identities=12% Similarity=0.048 Sum_probs=50.2
Q ss_pred CcHHHHHhhhCCCCCCceeeeee---------eecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 91 TPLEEIRGLFSGKSCPRFISCEF---------AHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 91 ~t~~~l~~~F~~~G~v~~v~~~~---------~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
-.+++|++.|++||.|..+.+.. .++|++||+|++.++|++|++.||| +.|+||+|.
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~g--r~~~gr~i~ 206 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNG--RWFAGRKVV 206 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTT--CBSSSSBCE
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcC--ceECCeEEE
Confidence 46788999999999998887742 3679999999999999999999999 799999983
No 209
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.72 E-value=3.2e-09 Score=69.44 Aligned_cols=66 Identities=15% Similarity=0.210 Sum_probs=52.0
Q ss_pred ceeEEEeecCCC----CC-c---HHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 78 KRCIVILREIPD----ST-P---LEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 78 ~~~tl~v~~lp~----~~-t---~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
+.-||.|.-.|. .. + ..+|.+.|++||.|..+++. .+.+||+|++.++|.+|++ ||| .++.||.||
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~---~d~~fVtF~d~~sAlaAi~-mnG--~~v~Gr~Lk 79 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFV---EDKMWVTFLEGSSALNVLS-LNG--KELLNRTIT 79 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEEC---SSSEEEEESSHHHHHHGGG-GTT--CEETTEEEE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEe---cCCEEEEECChHHHHHHHh-cCC--eEeCCeEEE
Confidence 445788877762 22 2 36799999999987777663 3559999999999999998 999 799999875
No 210
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.60 E-value=1.4e-08 Score=66.69 Aligned_cols=67 Identities=10% Similarity=0.156 Sum_probs=53.7
Q ss_pred CceeEEEeecCCCC-----C-c---HHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCcc
Q psy1630 77 HKRCIVILREIPDS-----T-P---LEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKE 147 (149)
Q Consensus 77 ~~~~tl~v~~lp~~-----~-t---~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ 147 (149)
++.-||.|.-++.+ . + ..+|.+.|++||.|..+++..+ -+||+|.+.++|.+|++ ||| ..+.||.
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d---~~fVtF~d~~sAl~AI~-ldG--~~v~Gr~ 86 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG---QMLVTFADSHSALSVLD-VDG--MKVKGRA 86 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT---EEEEECSCSHHHHHHHH-GGG--SEETTEE
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC---cEEEEEcChHHHHHHHh-cCC--eeeCCeE
Confidence 35678999888643 2 2 2568999999998888877443 39999999999999998 999 7999998
Q ss_pred CC
Q psy1630 148 SK 149 (149)
Q Consensus 148 ik 149 (149)
|+
T Consensus 87 L~ 88 (95)
T 1ufw_A 87 VK 88 (95)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 211
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.43 E-value=5.9e-08 Score=65.36 Aligned_cols=71 Identities=20% Similarity=0.149 Sum_probs=60.7
Q ss_pred CCceeEEEeecCCCCCcHHHHHhhhCCC-----CCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 76 NHKRCIVILREIPDSTPLEEIRGLFSGK-----SCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 76 ~~~~~tl~v~~lp~~~t~~~l~~~F~~~-----G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
+...+||-+-|+|..++.+.|+.+..++ |.+.-+-+.. .-|-|+|+|++...|-+|--.|+| .+|+||.|+
T Consensus 18 ~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~p-DH~GAivef~d~~~AgKasLaL~G--~ef~gr~Lr 93 (117)
T 2l9w_A 18 KELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVS-DFNGAIIIFRDSKFAAKMLMILNG--SQFQGKVIR 93 (117)
T ss_dssp TTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEET-TTTEEEEECSCHHHHHHHHHHHSS--EEETTEEEE
T ss_pred ccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEec-CCCceEEEEccchhhHHHHhhcCC--eeecCeEEE
Confidence 3457899999999999999999999999 8766655544 356699999999999999999999 799999874
No 212
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.78 E-value=6.2e-05 Score=49.65 Aligned_cols=54 Identities=15% Similarity=0.258 Sum_probs=44.8
Q ss_pred eEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHH
Q psy1630 80 CIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLR 137 (149)
Q Consensus 80 ~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~ 137 (149)
..+++ ++|+.+...+|..+|+.|| .+.+.--...+|||.|.+++.|..|+..++
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg---gv~I~WidDTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG---NIQISWIDDTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE---EEEEEEEETTEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC---CEEEEEEcCCeEEEEecCHHHHHHHHHhcc
Confidence 34555 9999999999999999999 344433457899999999999999998774
No 213
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.76 E-value=9.4e-05 Score=48.66 Aligned_cols=54 Identities=15% Similarity=0.189 Sum_probs=45.0
Q ss_pred EEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHH
Q psy1630 81 IVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLRE 138 (149)
Q Consensus 81 tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~ 138 (149)
.+++ ++|+.+...+|..+|+.||.+..-.+ ...+|||.|.+++.|..|+..++.
T Consensus 18 Vf~l-~FP~ewKt~DI~~lFs~fggv~I~Wi---dDTsAlvvf~~~~~a~~al~~i~k 71 (100)
T 1whv_A 18 VLHV-TFPKEWKTSDLYQLFSAFGNIQISWI---DDTSAFVSLSQPEQVQIAVNTSKY 71 (100)
T ss_dssp EEEE-ECCTTCCHHHHHHHHTTTCSCCCEEE---ETTEEEEECSCHHHHHHHHHHHHH
T ss_pred EEEE-eCChhhhhHHHHHHhhccCCEEEEEE---cCCeEEEEecCHHHHHHHHHhccc
Confidence 4555 99999999999999999995443333 568999999999999999988764
No 214
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.21 E-value=0.00091 Score=44.35 Aligned_cols=53 Identities=19% Similarity=0.173 Sum_probs=42.9
Q ss_pred eeEEEeecCCCCCcHHHHHhhhCC---C--CCCceeeeeeeecCeeEEEEeccHHHHHHHH
Q psy1630 79 RCIVILREIPDSTPLEEIRGLFSG---K--SCPRFISCEFAHNNSWYITFENDEDAQKAYR 134 (149)
Q Consensus 79 ~~tl~v~~lp~~~t~~~l~~~F~~---~--G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~ 134 (149)
.++|.|.|+|.+++++.|+-.|+. - |++..+.. .. +.|+|+|.+.+.|++.++
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~--~~-~~AvItF~d~~va~rVL~ 65 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQR--LG-CGGVLTFREPADAERVLA 65 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEE--ET-TEEEEEESSHHHHHHHHT
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEE--cC-CcEEEEEcChHHHHHHhc
Confidence 357999999999999999999987 2 34554443 23 899999999999999875
No 215
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=97.01 E-value=0.00012 Score=60.51 Aligned_cols=56 Identities=9% Similarity=-0.033 Sum_probs=43.2
Q ss_pred CceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHH
Q psy1630 77 HKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAY 133 (149)
Q Consensus 77 ~~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai 133 (149)
...|+|+|. .|...++.+|.+.|++||.|..+.+-....-||.|||.+.+++..++
T Consensus 51 qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~ 106 (464)
T 3pq1_A 51 QAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQ 106 (464)
T ss_dssp HHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHH
T ss_pred HhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHH
Confidence 357899998 79999999999999999999998886666679999999999998664
No 216
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.94 E-value=0.00045 Score=45.92 Aligned_cols=68 Identities=24% Similarity=0.186 Sum_probs=51.4
Q ss_pred eeEEEeecCCCCC----c-HHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 79 RCIVILREIPDST----P-LEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 79 ~~tl~v~~lp~~~----t-~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
.+||+|.|+|.++ . .+.++++|..++....-.. .++-.=.-|.|.++++|.+|=..|++ ..|.|++||
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~-lkSFRRirv~F~~~~~A~~AR~~Lh~--~~f~g~~~r 77 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQY-FKSFKRVRINFSNPLSAADARLRLHK--TEFLGKEMK 77 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEE-ETTTTEEEEECSSTTHHHHHHHTSTT--SEETTEECE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceee-cCcceEEEEEeCChHHHHHHHHHhcc--ceecCceeE
Confidence 4689999998754 2 2678999999996554322 12222367999999999999999998 689998774
No 217
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.85 E-value=0.0025 Score=41.30 Aligned_cols=64 Identities=17% Similarity=0.207 Sum_probs=47.6
Q ss_pred eEEEeecCCCCCcHHHHHhhhCCCCCCceeeeee-----e--ecCeeEEEEeccHHHHHHHHHHHHHhhhhcC
Q psy1630 80 CIVILREIPDSTPLEEIRGLFSGKSCPRFISCEF-----A--HNNSWYITFENDEDAQKAYRYLREDVREFQN 145 (149)
Q Consensus 80 ~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~-----~--~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g 145 (149)
+.|.|+.||+..|++++.+.++..+...+..-.. + .-.-|||.|.+.|++..-.+.++| ..|.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g--~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDG--YVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTT--CEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCC--cEEEc
Confidence 3589999999999999999999886433222111 1 224499999999999998888877 46644
No 218
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=95.60 E-value=0.016 Score=39.26 Aligned_cols=63 Identities=17% Similarity=0.084 Sum_probs=47.5
Q ss_pred ceeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHHHhhhhcC
Q psy1630 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLREDVREFQN 145 (149)
Q Consensus 78 ~~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g 145 (149)
..+-|.|-|+|.. ..+.|-..|++||.|...... .......|.|+++.+|++|+.. || ..+.|
T Consensus 23 ~~~wVtVFGFp~~-~~~~VL~~F~~~G~Iv~~~~~-~~~NWihI~Y~s~~~A~rAL~k-NG--~ii~g 85 (119)
T 1wwh_A 23 DDTWVTVFGFPQA-SASYILLQFAQYGNILKHVMS-NTGNWMHIRYQSKLQARKALSK-DG--RIFGE 85 (119)
T ss_dssp GGGEEEEECCCGG-GHHHHHHHHHTTSCEEEEEEC-SSSSEEEEEESSHHHHHHHHTT-TT--CEETT
T ss_pred CCCEEEEECCCHH-HHHHHHHHHHhhCcEEEeccC-CCCCeEEEEeCCHHHHHHHHHh-CC--eEecC
Confidence 4567889999987 477888899999976654432 2457789999999999999853 44 45554
No 219
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=94.96 E-value=0.022 Score=37.27 Aligned_cols=64 Identities=16% Similarity=0.255 Sum_probs=43.5
Q ss_pred eEEEeecCCCCCcHHHHHhhhCCCCCCceeee-e----ee--ecCeeEEEEeccHHHHHHHHHHHHHhhhhcC
Q psy1630 80 CIVILREIPDSTPLEEIRGLFSGKSCPRFISC-E----FA--HNNSWYITFENDEDAQKAYRYLREDVREFQN 145 (149)
Q Consensus 80 ~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~-~----~~--~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g 145 (149)
..|.|+.||+..|++++.+.++..-...+..- + .+ .-.-|||.|.++|+...-.+..+| ..|.+
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g--~~F~D 80 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDG--YIFLD 80 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTT--EEEEC
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCC--cEEEe
Confidence 45899999999999999988886432111110 0 01 224499999999998887776666 45543
No 220
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=94.03 E-value=0.07 Score=44.49 Aligned_cols=54 Identities=17% Similarity=0.232 Sum_probs=44.2
Q ss_pred EEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHH
Q psy1630 82 VILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLRE 138 (149)
Q Consensus 82 l~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~ 138 (149)
+++.++|..+...+|.++|+.+|.+.. ..-...+|||.|.+++.|..+++.++.
T Consensus 442 vl~v~f~~~~~~~~i~~~fs~fg~v~V---~widdt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 442 VLHVTFPKEWKTSDLYQLFSAFGNIQI---SWIDDTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp EEEEECCTTCCHHHHHHHGGGGCCCEE---EECSSSEEEEECSCHHHHHHHHHHHTT
T ss_pred EEEEeCCCCCCHHHHHHHHHhcCCEEE---EEEcCCeEEEEECCHHHHHHHHHHHHh
Confidence 555569999999999999999995443 333667899999999999999988865
No 221
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=93.29 E-value=0.045 Score=37.72 Aligned_cols=63 Identities=16% Similarity=0.136 Sum_probs=43.0
Q ss_pred eEEEeecCCCCCcHHHHHhhhCCCCCCce-eeeee------------------eecCeeEEEEeccHHHHHHHHHHHHHh
Q psy1630 80 CIVILREIPDSTPLEEIRGLFSGKSCPRF-ISCEF------------------AHNNSWYITFENDEDAQKAYRYLREDV 140 (149)
Q Consensus 80 ~tl~v~~lp~~~t~~~l~~~F~~~G~v~~-v~~~~------------------~~kg~afVeF~~~e~A~~Ai~~l~~~~ 140 (149)
.-|.|-|+|++. ...|-+.|++||.|.. ..+.. ...+...|+|+++.+|++|+. .++
T Consensus 8 ~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~---~NG 83 (132)
T 3p3d_A 8 LAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL---ENG 83 (132)
T ss_dssp CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT---TTT
T ss_pred eEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH---hCC
Confidence 457778998764 4567778999997654 21110 124567899999999999984 333
Q ss_pred hhhcCc
Q psy1630 141 REFQNK 146 (149)
Q Consensus 141 ~~~~g~ 146 (149)
..|.|.
T Consensus 84 ~ii~G~ 89 (132)
T 3p3d_A 84 AVFNGV 89 (132)
T ss_dssp CEETTE
T ss_pred eEeCcE
Confidence 677663
No 222
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=86.05 E-value=0.22 Score=32.56 Aligned_cols=76 Identities=8% Similarity=0.060 Sum_probs=29.1
Q ss_pred hhhhhhhcCCCcee-eeEEeechhhhhhh----chhhhHHHHHHhhCCCcccccccccccC--------------CCcee
Q psy1630 20 DAYLLSQMDNDQYV-PIWTVANFNQVKKL----TKDIKLITEVLRESPNVQVDEEGIKVRP--------------NHKRC 80 (149)
Q Consensus 20 d~~l~~~~~~~g~v-pi~~~~~F~kvk~l----~~d~~~i~~al~~S~~lev~~d~~~vrr--------------~~~~~ 80 (149)
+.-|++.+..-|-| .+.++..-++-+.+ -.+.+....|++.....++.....+|.. .....
T Consensus 19 e~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~~~~~~~~~~~~~~~ 98 (115)
T 4f25_A 19 NKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT 98 (115)
T ss_dssp HHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCCC-------------
T ss_pred HHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCccccccccccccCCCC
Confidence 34566666666653 55555432221222 2467788888876555455433333321 01345
Q ss_pred EEEeecCCCCCcHHH
Q psy1630 81 IVILREIPDSTPLEE 95 (149)
Q Consensus 81 tl~v~~lp~~~t~~~ 95 (149)
+|||+|||+++|++.
T Consensus 99 ~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 99 NVYIKNFGPGSTRAA 113 (115)
T ss_dssp ---------------
T ss_pred ceEeCCCCCCccccc
Confidence 799999999998764
No 223
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=77.38 E-value=8.1 Score=27.55 Aligned_cols=50 Identities=18% Similarity=0.268 Sum_probs=37.0
Q ss_pred eEEEeecCCCC---------CcHHHHHhhh--CCCCCCceeee--eeeecCeeEEEEeccHHH
Q psy1630 80 CIVILREIPDS---------TPLEEIRGLF--SGKSCPRFISC--EFAHNNSWYITFENDEDA 129 (149)
Q Consensus 80 ~tl~v~~lp~~---------~t~~~l~~~F--~~~G~v~~v~~--~~~~kg~afVeF~~~e~A 129 (149)
++++|-|+|.. .+..+|++-| +.|.+++...+ +.++.|+|.|+|.+.-..
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~G 75 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNG 75 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHH
Confidence 57888888872 3457899977 99988665444 456889999999987543
No 224
>1wfx_A Probable RNA 2'-phosphotransferase; tRNA splicing, NAD, structural GE riken structural genomics/proteomics initiative, RSGI; 2.80A {Aeropyrum pernix} SCOP: d.166.1.5
Probab=76.09 E-value=0.78 Score=33.26 Aligned_cols=46 Identities=13% Similarity=0.120 Sum_probs=31.6
Q ss_pred cCCCceeeeEEeechhhhh--hhchhhhHHHHHHhhCCC--cccccccccccC
Q psy1630 27 MDNDQYVPIWTVANFNQVK--KLTKDIKLITEVLRESPN--VQVDEEGIKVRP 75 (149)
Q Consensus 27 ~~~~g~vpi~~~~~F~kvk--~l~~d~~~i~~al~~S~~--lev~~d~~~vrr 75 (149)
|+++|||+++.++. .+.+ ....+.+.|.+....++. .+++. .+||-
T Consensus 24 ld~~G~v~v~~LL~-~~~~~~~~~~t~~~l~~vV~~~~K~Rf~l~~--~~IRA 73 (186)
T 1wfx_A 24 LTREGWARVSEVVE-GLRKAGWSWVEEWHIVGVALHDPKGRYELRN--GEIRA 73 (186)
T ss_dssp CCTTCCEEHHHHHH-HHHHTTCTTCCHHHHHHHHHHCSSCCEEEET--TEEEE
T ss_pred cCCCCCEEHHHHHh-hhhhcccCCCCHHHHHHHHhcCCCCceEeec--cEEEe
Confidence 45899999999998 3333 334577888888887664 45553 36664
No 225
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=72.36 E-value=0.63 Score=41.46 Aligned_cols=73 Identities=15% Similarity=0.204 Sum_probs=55.0
Q ss_pred cccccceeeccccccchhhhhhhcC--------CCceeeeEEeechh-hhhhhch--------h----hhHHHHHHhhCC
Q psy1630 4 TTYDLACVCCRENLANDAYLLSQMD--------NDQYVPIWTVANFN-QVKKLTK--------D----IKLITEVLRESP 62 (149)
Q Consensus 4 i~~q~e~yfs~~Nl~~d~~l~~~~~--------~~g~vpi~~~~~F~-kvk~l~~--------d----~~~i~~al~~S~ 62 (149)
|..+|.|.|||+=|...+=|..++. -.|.||+.+|+.+- |+..++. | ...|.+|.+.++
T Consensus 111 ~~~~~~~~f~~e~~~~~~pl~~h~~~~~~r~~~~~~~~p~~~~~~~d~k~~~~ck~~~~~~e~~p~~~~~~~~~a~~~~~ 190 (950)
T 3htx_A 111 IVGRIKYIFSDEFLSAEHPLGAHLRAALRRDGERCGSVPVSVIATVDAKINSRCKIINPSVESDPFLAISYVMKAAAKLA 190 (950)
T ss_dssp HHHHHHHHTSTGGGGCSSTHHHHHHHHHTSCGGGTTEECHHHHHHTCHHHHHHHHHHCTHHHHCTHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhhhhhhhccCchHHHHHHHHhhcCccccccchhhheehhhhhhhhhhhcCcccccChHHHHHHHHHHhhcCC
Confidence 5678999999999998877777663 35789999999983 5544432 2 357888999888
Q ss_pred CcccccccccccCCC
Q psy1630 63 NVQVDEEGIKVRPNH 77 (149)
Q Consensus 63 ~lev~~d~~~vrr~~ 77 (149)
.+.+++.+ .|+|+.
T Consensus 191 ~~~~~~~~-~~~~~~ 204 (950)
T 3htx_A 191 DYIVASPH-GLRRKN 204 (950)
T ss_dssp SSEEEETT-EEEESS
T ss_pred CcEEeCCc-ccccCC
Confidence 87788776 887653
No 226
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=45.82 E-value=20 Score=21.12 Aligned_cols=56 Identities=11% Similarity=0.115 Sum_probs=32.7
Q ss_pred CcHHHHHhhhCCCCCCceeeee--eeecCeeEEEEeccHHHHHHHHHHHHHhhhhcCccCC
Q psy1630 91 TPLEEIRGLFSGKSCPRFISCE--FAHNNSWYITFENDEDAQKAYRYLREDVREFQNKESK 149 (149)
Q Consensus 91 ~t~~~l~~~F~~~G~v~~v~~~--~~~kg~afVeF~~~e~A~~Ai~~l~~~~~~~~g~~ik 149 (149)
+...+|-.++..-+.+..-.+. .-...|.||+-.. +.|+.+++.+++ ..+.|++++
T Consensus 13 ~~p~~ivg~i~~~~gi~~~~IG~I~i~d~~s~v~v~~-~~~~~~~~~l~~--~~i~g~~~~ 70 (76)
T 2g0c_A 13 IRAVDFVGTIAKIDGVSADDIGIITIMDNASYVEILN-GKGPHVLKVMKN--TTVKGKQLK 70 (76)
T ss_dssp --CHHHHHHHHTSTTCCGGGEEEEEECSSCEEEEECT-TCHHHHHHHHTT--CCC---CCC
T ss_pred CCHHHHHHHHHHccCCChhhccEEEEeCCcEEEEECH-HHHHHHHHHhcc--ccCcCceEE
Confidence 4555666655554433332221 1266789999887 567889998887 578888764
No 227
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=43.05 E-value=20 Score=23.28 Aligned_cols=26 Identities=8% Similarity=0.004 Sum_probs=21.5
Q ss_pred eeeecCeeEEEEeccHHHHHHHHHHH
Q psy1630 112 EFAHNNSWYITFENDEDAQKAYRYLR 137 (149)
Q Consensus 112 ~~~~kg~afVeF~~~e~A~~Ai~~l~ 137 (149)
+...+||.|||=.++.+...|++-+.
T Consensus 47 ~~~lkGyIyVEA~~~~~V~~ai~gi~ 72 (106)
T 3h7h_B 47 PEHVKGYIYVEAYKQTHVKQAIEGVG 72 (106)
T ss_dssp CTTCCSEEEEEESSHHHHHHHHTTCG
T ss_pred cCCCceEEEEEeCCHHHHHHHHhccc
Confidence 44579999999999999999986553
No 228
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=32.21 E-value=10 Score=23.88 Aligned_cols=25 Identities=8% Similarity=0.098 Sum_probs=20.0
Q ss_pred eecCeeEEEEeccHHHHHHHHHHHH
Q psy1630 114 AHNNSWYITFENDEDAQKAYRYLRE 138 (149)
Q Consensus 114 ~~kg~afVeF~~~e~A~~Ai~~l~~ 138 (149)
.+.||.||+++..++...+++...+
T Consensus 48 ~fPGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 48 SLKGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp TSTTEEEEEESSHHHHHHHHTTCTT
T ss_pred ccCCEEEEEEecchhHHHHHHCCCC
Confidence 4799999999998888887765444
No 229
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.47 E-value=42 Score=20.39 Aligned_cols=44 Identities=16% Similarity=0.171 Sum_probs=29.6
Q ss_pred cHHHHHhhhCCCCCCceeeeeee--ecCeeEEEEeccHHHHHHHHHHH
Q psy1630 92 PLEEIRGLFSGKSCPRFISCEFA--HNNSWYITFENDEDAQKAYRYLR 137 (149)
Q Consensus 92 t~~~l~~~F~~~G~v~~v~~~~~--~kg~afVeF~~~e~A~~Ai~~l~ 137 (149)
+.+++.+.....|-|..+..... .+|... ..+++++..|++.+.
T Consensus 33 ~~~~~~~~~~~~~~P~vvKp~~~~~~~gv~~--v~~~~el~~~~~~~~ 78 (108)
T 2cqy_A 33 DAEEAVRIAREIGYPVMIKASAGGGGKGMRI--AWDDEETRDGFRLSS 78 (108)
T ss_dssp SHHHHHHHHHHHCSSEEEEETTSCCTTTCEE--ESSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCCEEEEECCCCCCccEEE--eCCHHHHHHHHHHHH
Confidence 56777777777776666655433 344443 578899999987664
No 230
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=27.40 E-value=71 Score=17.89 Aligned_cols=54 Identities=7% Similarity=0.065 Sum_probs=36.3
Q ss_pred eeEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHH
Q psy1630 79 RCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYR 134 (149)
Q Consensus 79 ~~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~ 134 (149)
..++.|.|+.-..-...|+..+.+ ..+..+.+.. ..+.+-|+|.+.++..+|++
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~-~~~~~~v~~~~~~~i~~~i~ 59 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDL-NEAVVAGNKEDVDKYIKAVE 59 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECS-SEEEEEEEGGGHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEc-cCCEEEEEECCHHHHHHHHH
Confidence 346788888877778888888888 6666666544 34556777774445555553
No 231
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=24.20 E-value=1.8e+02 Score=21.60 Aligned_cols=70 Identities=17% Similarity=0.142 Sum_probs=38.8
Q ss_pred eeEEEeecCCCCCc--HHHHHhhhCC--------CCCCceeeee------------eeecCeeEEEEeccHHHHHHHHHH
Q psy1630 79 RCIVILREIPDSTP--LEEIRGLFSG--------KSCPRFISCE------------FAHNNSWYITFENDEDAQKAYRYL 136 (149)
Q Consensus 79 ~~tl~v~~lp~~~t--~~~l~~~F~~--------~G~v~~v~~~------------~~~kg~afVeF~~~e~A~~Ai~~l 136 (149)
++.|.+.|+|+... ...+..+|.+ .+.-..+.+. +.+.....|-|....+=++-+++.
T Consensus 52 r~NIRIiGVPEgee~~~kgaenlf~eII~EnfPnL~ke~diqV~ea~Rsp~~~~~kr~tPR~IIvK~~~~~~KErILkaa 131 (233)
T 2yko_A 52 RPNLRLIGVPESDVENGTKLENTLQDIIQENFPNLARQANVQIQEIQRTPQRYSSRRATPRHIIVRFTKVEMKEKMLRAA 131 (233)
T ss_dssp TTEEEEESCCCCTTCCHHHHHHHHHHHHHHHCTTCC---CCCEEEEEEC-------CCSCCCEEEEESSHHHHHHHHHHH
T ss_pred ccceeEeecCCCcccccccHHHHHHHHHHHhCCCCccccceeeechhcCCCCCCCCCCCCCeEEEEecccccHHHHHHHH
Confidence 46799999999876 3334444442 2211112111 122345778888777766666666
Q ss_pred HHH-hhhhcCccC
Q psy1630 137 RED-VREFQNKES 148 (149)
Q Consensus 137 ~~~-~~~~~g~~i 148 (149)
... .-++.|.||
T Consensus 132 R~k~~vtykG~pI 144 (233)
T 2yko_A 132 REKGRVTLKGKPI 144 (233)
T ss_dssp HTTSCEEETTEEE
T ss_pred HHhcccccCCCce
Confidence 543 245677776
No 232
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=22.22 E-value=1e+02 Score=16.62 Aligned_cols=58 Identities=7% Similarity=0.029 Sum_probs=36.3
Q ss_pred eEEEeecCCCCCcHHHHHhhhCCCCCCceeeeeeeecCeeEEEEeccHHHHHHHHHHHH
Q psy1630 80 CIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLRE 138 (149)
Q Consensus 80 ~tl~v~~lp~~~t~~~l~~~F~~~G~v~~v~~~~~~kg~afVeF~~~e~A~~Ai~~l~~ 138 (149)
.++.|.|+.-..-...++..+.+...+..+.+.. ..+.+.|+|....+.....+.+..
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~-~~~~~~v~~~~~~~~~~i~~~i~~ 61 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNF-ALEQAVVSYHGETTPQILTDAVER 61 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEET-TTTEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEe-cCCEEEEEECCCCCHHHHHHHHHH
Confidence 3567777776666777888888775555555543 456778888544444444444443
No 233
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=21.34 E-value=47 Score=19.20 Aligned_cols=21 Identities=43% Similarity=0.593 Sum_probs=16.2
Q ss_pred cCeeEEEEeccHHHHHHHHHH
Q psy1630 116 NNSWYITFENDEDAQKAYRYL 136 (149)
Q Consensus 116 kg~afVeF~~~e~A~~Ai~~l 136 (149)
+..+.=+|+++|+|-.|+...
T Consensus 26 ~r~~LGtf~T~eeAA~AyD~A 46 (63)
T 1gcc_A 26 ARVWLGTFETAEDAALAYDRA 46 (63)
T ss_dssp EEEEEEEESSHHHHHHHHHHH
T ss_pred eEEEeeeCCCHHHHHHHHHHH
Confidence 345667999999999988543
No 234
>1k8v_A Neuropeptide F; moniezia expansa, NPF, unknown function; NMR {Synthetic} SCOP: j.6.1.1
Probab=20.58 E-value=51 Score=17.55 Aligned_cols=25 Identities=12% Similarity=0.171 Sum_probs=19.6
Q ss_pred EEeccHHHHHHHHHHHHHhhhhcCcc
Q psy1630 122 TFENDEDAQKAYRYLREDVREFQNKE 147 (149)
Q Consensus 122 eF~~~e~A~~Ai~~l~~~~~~~~g~~ 147 (149)
.|+++++..+=++.||.. -.+-|||
T Consensus 13 ~F~s~~~l~~YL~~LneY-yai~GRP 37 (40)
T 1k8v_A 13 VLDNKAALRDYLRQINEY-FAIIGRP 37 (40)
T ss_dssp SCSSCSHHHHHHHHHHHH-HHHHHCS
T ss_pred hcCCHHHHHHHHHHHHHH-HHHhcCc
Confidence 588899999999888875 5566665
No 235
>2od0_A Hypothetical protein VP1028; structural genomics, unknown functi 2, protein structure initiative, midwest center for structu genomics; 1.95A {Vibrio parahaemolyticus} SCOP: d.198.5.2
Probab=20.53 E-value=52 Score=20.76 Aligned_cols=21 Identities=19% Similarity=0.105 Sum_probs=16.9
Q ss_pred CcHHHHHhhhCCCCCCceeee
Q psy1630 91 TPLEEIRGLFSGKSCPRFISC 111 (149)
Q Consensus 91 ~t~~~l~~~F~~~G~v~~v~~ 111 (149)
.+.+.|.+.|++.|.|..-+|
T Consensus 4 ~~~~~i~e~l~~lg~i~~r~M 24 (105)
T 2od0_A 4 PILKDSMKLFEALGTIKSRSM 24 (105)
T ss_dssp THHHHHHHHHGGGSCCEEEEE
T ss_pred hHHHHHHHHHhccCCceEeec
Confidence 467789999999998877665
Done!