RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1630
(149 letters)
>d2cqka1 a.4.5.46 (A:43-130) La-related protein 4 LARP4 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 98.2 bits (245), Expect = 2e-28
Identities = 48/69 (69%), Positives = 57/69 (82%)
Query: 13 CRENLANDAYLLSQMDNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIK 72
RENL+ D YL+SQMD+DQ++PIWTVAN ++KKLT D LI EVLR SP VQVDE+G K
Sbjct: 20 SRENLSKDLYLISQMDSDQFIPIWTVANMEEIKKLTTDPDLILEVLRSSPMVQVDEKGEK 79
Query: 73 VRPNHKRCI 81
VRP+HKRCI
Sbjct: 80 VRPSHKRCI 88
>d1zh5a1 a.4.5.46 (A:5-103) Lupus La autoantigen N-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 99
Score = 77.1 bits (190), Expect = 5e-20
Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 9/82 (10%)
Query: 13 CRENLANDAYLLSQMD-NDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPN--VQVDEE 69
NL D +L Q+ ++ +VP+ + FN++ +LT D +I E L +S +++ E+
Sbjct: 22 GDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTDFNVIVEALSKSKAELMEISED 81
Query: 70 GIKVRPNHKRCIVILREIPDST 91
K+R + + +P+ T
Sbjct: 82 KTKIRRSPS------KPLPEVT 97
>d1s29a_ a.4.5.46 (A:) Lupus La autoantigen N-terminal domain
{Trypanosoma brucei [TaxId: 5691]}
Length = 92
Score = 76.7 bits (189), Expect = 6e-20
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 13 CRENLANDAYLLSQM--DNDQYVPIWTVANFNQVKKLTKDIKLITEVLRESPNVQVDEEG 70
N+ D +L +M + + +V + T+ F +V +T D+K + E +R S + + E+G
Sbjct: 23 SDVNVQRDIFLKGKMAENAEGFVSLETLLTFKRVNSVTTDVKEVVEAIRPSEKLVLSEDG 82
Query: 71 IKVRPNH 77
+ VR
Sbjct: 83 LMVRRRD 89
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 34.1 bits (78), Expect = 0.001
Identities = 10/59 (16%), Positives = 20/59 (33%), Gaps = 4/59 (6%)
Query: 82 VILREIPDSTPLEEIRGLFSG----KSCPRFISCEFAHNNSWYITFENDEDAQKAYRYL 136
+++ + +I+ LF+ K + + FE DA KA +
Sbjct: 3 LLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQY 61
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8,
ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 33.9 bits (77), Expect = 0.001
Identities = 8/75 (10%), Positives = 27/75 (36%), Gaps = 2/75 (2%)
Query: 63 NVQVDEEGIKVRPNHKRCIVILR-EIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYI 121
+ + EGI+ + +V+ + + ++ + + + +
Sbjct: 3 HTLLRHEGIETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-NKPYSFA 61
Query: 122 TFENDEDAQKAYRYL 136
+ E++++AY L
Sbjct: 62 RYRTTEESKRAYVTL 76
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 33.1 bits (75), Expect = 0.003
Identities = 11/69 (15%), Positives = 28/69 (40%)
Query: 68 EEGIKVRPNHKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDE 127
E+ + ++ + + + +E++ +F R +S + YI F+++
Sbjct: 5 EDPCTSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEA 64
Query: 128 DAQKAYRYL 136
DA+K
Sbjct: 65 DAEKNLEEK 73
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 33.0 bits (75), Expect = 0.003
Identities = 13/59 (22%), Positives = 20/59 (33%), Gaps = 1/59 (1%)
Query: 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYL 136
+R + + +P EE+R LF K +I E A+ A L
Sbjct: 7 QRSRLFVGNLPPDITEEEMRKLFE-KYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVEL 64
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 33.0 bits (75), Expect = 0.003
Identities = 10/64 (15%), Positives = 25/64 (39%), Gaps = 5/64 (7%)
Query: 78 KRCIVILREIPDSTPLEEIRGLFS--GKSCPRFISCEFAHNNSW---YITFENDEDAQKA 132
K + + +P + +++ +F G + I + ++ + E+AQ+A
Sbjct: 5 KDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEA 64
Query: 133 YRYL 136
L
Sbjct: 65 ISAL 68
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 97
Score = 31.6 bits (71), Expect = 0.011
Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 4/65 (6%)
Query: 72 KVRPNHKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQK 131
K P + + + + +T L + F R I ++ YI +E+ + AQ
Sbjct: 13 KANPTTR---LWVGGLGPNTSLAALAREFDRFGSIRTIDHVK-GDSFAYIQYESLDAAQA 68
Query: 132 AYRYL 136
A +
Sbjct: 69 ACAKM 73
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 99
Score = 31.6 bits (71), Expect = 0.011
Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 5/60 (8%)
Query: 82 VILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSW-----YITFENDEDAQKAYRYL 136
+ +R + ++ E++ LFS + ++TF E A KAY +
Sbjct: 11 LFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEV 70
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 30.7 bits (69), Expect = 0.014
Identities = 9/55 (16%), Positives = 18/55 (32%), Gaps = 5/55 (9%)
Query: 87 IPDSTPLEEIRGLFS--GKSCPRFISCEFAHNNS---WYITFENDEDAQKAYRYL 136
+ + FS G + + S Y+ F+ DA++A +
Sbjct: 8 LHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 62
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 30.3 bits (68), Expect = 0.020
Identities = 10/58 (17%), Positives = 20/58 (34%), Gaps = 5/58 (8%)
Query: 80 CIVILREIPDSTPLEEIRGLFS--GKSCPRFISCEFAHNNSW---YITFENDEDAQKA 132
C + + + T E +R F G+ + + S ++TF + K
Sbjct: 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKV 58
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 30.8 bits (69), Expect = 0.024
Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 75 PNHKRCIVILREIPDSTPLEEIRGLFS--GKSCPRFISCEFAHNNSWYITFENDEDAQKA 132
P I+ +R +P EE+ +F G + + Y+ +E+ DA+ A
Sbjct: 3 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNA 62
Query: 133 YRYL 136
+L
Sbjct: 63 CDHL 66
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
L-like {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 30.5 bits (68), Expect = 0.027
Identities = 7/67 (10%), Positives = 23/67 (34%), Gaps = 1/67 (1%)
Query: 80 CIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYLRED 139
+V +R + +S ++ ++ + + FEN + A++ + +
Sbjct: 16 PVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQAL-VEFENIDSAKECVTFAADV 74
Query: 140 VREFQNK 146
+
Sbjct: 75 PVYIAGQ 81
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 29.9 bits (67), Expect = 0.041
Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 5/64 (7%)
Query: 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSW-----YITFENDEDAQKA 132
K C + + + T E+I LFS + I ++ + + DA+ A
Sbjct: 6 KSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENA 65
Query: 133 YRYL 136
RY+
Sbjct: 66 MRYI 69
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 29.8 bits (67), Expect = 0.043
Identities = 6/49 (12%), Positives = 18/49 (36%), Gaps = 3/49 (6%)
Query: 88 PDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYL 136
++ +FS + + C ++ + + N+ +A+ A
Sbjct: 25 TLVVKKSDVEAIFS--KYGKIVGCSVHKGFAF-VQYVNERNARAAVAGE 70
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 29.7 bits (66), Expect = 0.044
Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 6/72 (8%)
Query: 70 GIKVRPNHKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNS-----WYITFE 124
G + P+ C+ + + T ++R +FS +S + + ++ FE
Sbjct: 1 GNRANPDPNCCLGV-FGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFE 59
Query: 125 NDEDAQKAYRYL 136
N +DA++A
Sbjct: 60 NVDDAKEAKERA 71
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 88
Score = 29.7 bits (66), Expect = 0.045
Identities = 11/62 (17%), Positives = 23/62 (37%), Gaps = 5/62 (8%)
Query: 80 CIVILREIPDSTPLEEIRGLFS--GKSCPRFISCEFAHNNSW---YITFENDEDAQKAYR 134
I+ + I + +EI+ F G+ ++ + S + +E + A A
Sbjct: 8 WILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKE 67
Query: 135 YL 136
L
Sbjct: 68 AL 69
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 29.2 bits (65), Expect = 0.059
Identities = 8/64 (12%), Positives = 19/64 (29%), Gaps = 5/64 (7%)
Query: 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSW-----YITFENDEDAQKA 132
+ V + + + + LF ++ F ++EDA A
Sbjct: 8 QDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYA 67
Query: 133 YRYL 136
+ +
Sbjct: 68 IKIM 71
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 29.1 bits (65), Expect = 0.064
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Query: 82 VILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSW------YITFENDEDAQKAYRY 135
+++R IP EIR LFS + + + ++ F +DA+KA+
Sbjct: 11 ILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNA 70
Query: 136 L 136
L
Sbjct: 71 L 71
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 29.2 bits (65), Expect = 0.064
Identities = 4/60 (6%), Positives = 19/60 (31%), Gaps = 5/60 (8%)
Query: 82 VILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSW-----YITFENDEDAQKAYRYL 136
+ + +P+ ++++ L + + + + + + +A L
Sbjct: 4 LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 63
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 28.8 bits (64), Expect = 0.074
Identities = 10/58 (17%), Positives = 21/58 (36%), Gaps = 3/58 (5%)
Query: 82 VILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSW---YITFENDEDAQKAYRYL 136
+ ++ + S + + FS N S ++ FE E A++A +
Sbjct: 11 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKM 68
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 28.8 bits (64), Expect = 0.077
Identities = 13/60 (21%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Query: 82 VILREIPDSTPLEEIRGLFS--GKSCPRFISCEFAHNNSW---YITFENDEDAQKAYRYL 136
+I+ +P E+ LF G I ++ S+ ++ F ++ D+Q+A + L
Sbjct: 5 LIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVL 64
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 28.9 bits (64), Expect = 0.079
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
Query: 82 VILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNS---WYITFENDEDAQKAYRYL 136
+ + IP ++R +F + F S ++TFEN DA +A L
Sbjct: 14 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKL 71
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 28.8 bits (64), Expect = 0.082
Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 5/51 (9%)
Query: 87 IPDSTPLEEIRGLFS--GKSCPRFISCEFAHNNSW---YITFENDEDAQKA 132
+ TP E+IR F G+ + + N +ITF+ +E +K
Sbjct: 7 LSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKI 57
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 28.5 bits (63), Expect = 0.10
Identities = 10/64 (15%), Positives = 19/64 (29%), Gaps = 6/64 (9%)
Query: 78 KRCIVILREIPDSTPLEEIRGLFSG-----KSCPRFISCEFAHNNSWYITFENDEDAQKA 132
KR + + + + + + F H ++ FE EDA A
Sbjct: 5 KRVLYV-GGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAA 63
Query: 133 YRYL 136
+
Sbjct: 64 IDNM 67
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 28.5 bits (63), Expect = 0.11
Identities = 9/46 (19%), Positives = 16/46 (34%)
Query: 87 IPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKA 132
+E+R FS + ++TF +D+ AQ
Sbjct: 13 CTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSL 58
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 27.6 bits (61), Expect = 0.21
Identities = 6/51 (11%), Positives = 16/51 (31%), Gaps = 5/51 (9%)
Query: 87 IPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSW-----YITFENDEDAQKA 132
+ T ++++ FS + + ++ F+ E K
Sbjct: 7 LSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKV 57
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 27.7 bits (61), Expect = 0.22
Identities = 12/70 (17%), Positives = 24/70 (34%), Gaps = 8/70 (11%)
Query: 75 PNHKR---CIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSW-----YITFEND 126
PN + + + + + T +++ LF I +I+F
Sbjct: 1 PNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRR 60
Query: 127 EDAQKAYRYL 136
EDA +A +
Sbjct: 61 EDAARAIAGV 70
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 27.7 bits (61), Expect = 0.27
Identities = 13/75 (17%), Positives = 24/75 (32%), Gaps = 7/75 (9%)
Query: 80 CIVILREIPDSTPLEEIRGLFS--GKSCPRFISCEFAHNNSW-----YITFENDEDAQKA 132
C + + IP EEI + + I A + ++ +E+ A A
Sbjct: 2 CRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMA 61
Query: 133 YRYLREDVREFQNKE 147
R L + +
Sbjct: 62 RRKLMPGRIQLWGHQ 76
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 27.3 bits (60), Expect = 0.27
Identities = 10/64 (15%), Positives = 23/64 (35%), Gaps = 5/64 (7%)
Query: 78 KRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSW-----YITFENDEDAQKA 132
+ + + +P + +E+ LFS +I F+ +A++A
Sbjct: 5 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEA 64
Query: 133 YRYL 136
+ L
Sbjct: 65 IKGL 68
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 27.3 bits (60), Expect = 0.30
Identities = 9/58 (15%), Positives = 18/58 (31%), Gaps = 3/58 (5%)
Query: 82 VILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSW---YITFENDEDAQKAYRYL 136
+ + + I LFS + H ++ ++ F DA A +
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAM 68
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 27.2 bits (60), Expect = 0.30
Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 3/73 (4%)
Query: 65 QVDEEGIKVRPNHKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCE-FAHNNSWYITF 123
Q+ E + + + K C V I + +R FS + + F ++ F
Sbjct: 4 QLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFS--PFGQIMEIRVFPEKGYSFVRF 61
Query: 124 ENDEDAQKAYRYL 136
E A A +
Sbjct: 62 STHESAAHAIVSV 74
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 27.0 bits (59), Expect = 0.37
Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 5/60 (8%)
Query: 82 VILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSW-----YITFENDEDAQKAYRYL 136
+I+ +P + EE R LF ++ + + +DA+KA L
Sbjct: 5 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 64
>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 112
Score = 27.2 bits (59), Expect = 0.42
Identities = 9/64 (14%), Positives = 18/64 (28%), Gaps = 5/64 (7%)
Query: 74 RPNHKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCE-----FAHNNSWYITFENDED 128
P+ V L+ +P + + F ++ F N+ D
Sbjct: 13 SPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEAD 72
Query: 129 AQKA 132
+ A
Sbjct: 73 YKAA 76
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 26.5 bits (58), Expect = 0.57
Identities = 13/87 (14%), Positives = 28/87 (32%), Gaps = 11/87 (12%)
Query: 74 RPNHKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSW-----YITFENDED 128
R K +I+ +P T ++++ FS + + ++ F E
Sbjct: 3 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYET 62
Query: 129 AQKAYRYLRE------DVREFQNKESK 149
K D + +K+S+
Sbjct: 63 QVKVMSQRHMIDGRWCDCKLPNSKQSQ 89
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 26.2 bits (57), Expect = 0.57
Identities = 8/51 (15%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Query: 87 IPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSW-----YITFENDEDAQKA 132
+ +T +E+++ F F + ++TFE+++ +K
Sbjct: 7 LSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKV 57
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 26.1 bits (57), Expect = 0.72
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 8/58 (13%)
Query: 87 IPDSTPLEEIRGLFS--GKSCPRFISCEFAHNNSW------YITFENDEDAQKAYRYL 136
+ ST E ++G+FS G IS + ++ ++ E AQKA + L
Sbjct: 6 LNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQL 63
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 91
Score = 26.2 bits (57), Expect = 0.72
Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 9/69 (13%)
Query: 74 RPNHKRCIVILREIPDSTPLEEIR----GLFSGKSCPRFISCEFAHNNSWY--ITFENDE 127
RPNH + + + + +E++ +FS I + + F+
Sbjct: 1 RPNHT---IYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVS 57
Query: 128 DAQKAYRYL 136
A A R +
Sbjct: 58 SATNALRSM 66
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 26.2 bits (57), Expect = 0.81
Identities = 9/67 (13%), Positives = 18/67 (26%), Gaps = 7/67 (10%)
Query: 75 PNHKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSW-----YITFENDEDA 129
+ V +P T +R F G ++T + A
Sbjct: 8 TTFTKIFV--GGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAA 65
Query: 130 QKAYRYL 136
++A +
Sbjct: 66 ERACKDP 72
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 26.2 bits (57), Expect = 0.97
Identities = 6/62 (9%), Positives = 21/62 (33%), Gaps = 5/62 (8%)
Query: 80 CIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSW-----YITFENDEDAQKAYR 134
+ + +P +++ +F + +++++N AQ A +
Sbjct: 19 ANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 78
Query: 135 YL 136
+
Sbjct: 79 SM 80
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 26.4 bits (57), Expect = 1.0
Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 6/67 (8%)
Query: 75 PNHKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSW-----YITFENDEDA 129
P+ R +++ IP + ++R LF + ++ F++ A
Sbjct: 39 PDVLRNLMV-NYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSA 97
Query: 130 QKAYRYL 136
Q+A L
Sbjct: 98 QQAIAGL 104
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 25.1 bits (54), Expect = 1.4
Identities = 9/60 (15%), Positives = 20/60 (33%), Gaps = 5/60 (8%)
Query: 82 VILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNS-----WYITFENDEDAQKAYRYL 136
+ +R + T +++ L + ++ F++ AQKA L
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTAL 60
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 25.0 bits (54), Expect = 1.8
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 81 IVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSWYITFENDEDAQKAYRYL 136
I+ +R + ST E I F+ + + ++ F N EDA +A + L
Sbjct: 10 ILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK-IRDYAFVHFSNREDAVEAMKAL 64
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 25.2 bits (54), Expect = 2.0
Identities = 8/62 (12%), Positives = 18/62 (29%), Gaps = 5/62 (8%)
Query: 80 CIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSW-----YITFENDEDAQKAYR 134
V +R + + E + + +++ + + F E AQK
Sbjct: 9 KTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLA 68
Query: 135 YL 136
Sbjct: 69 AA 70
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 83
Score = 24.7 bits (53), Expect = 2.1
Identities = 5/59 (8%), Positives = 16/59 (27%), Gaps = 6/59 (10%)
Query: 82 VILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSW------YITFENDEDAQKAYR 134
+ + + + + FS ++ +I F + + + A
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIE 59
>d2ctfa1 d.51.1.1 (A:7-96) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 90
Score = 24.8 bits (54), Expect = 2.6
Identities = 7/35 (20%), Positives = 11/35 (31%)
Query: 112 EFAHNNSWYITFENDEDAQKAYRYLREDVREFQNK 146
EF ED A + V++ N+
Sbjct: 56 EFTEGEDKITLEGPTEDVSVAQEQIEGMVKDLINR 90
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 24.6 bits (53), Expect = 3.7
Identities = 10/56 (17%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
Query: 82 VILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSW-YITFENDEDAQKAYRYL 136
+I+ + L+ + +FS I +N + + + AQ A L
Sbjct: 10 IIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSL 65
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 24.1 bits (52), Expect = 4.1
Identities = 13/85 (15%), Positives = 28/85 (32%), Gaps = 15/85 (17%)
Query: 74 RPNHKRCIVILREIPDSTPLEEIRGLFS---------GKSCPRFISCEFAHNNSW---YI 121
R H+R VI++ + E+ + + + + +
Sbjct: 4 RMRHERV-VIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASV 62
Query: 122 TFENDEDAQKAYRYLREDVREFQNK 146
+F + E+A + L D R F +
Sbjct: 63 SFRDPEEADYCIQTL--DGRWFGGR 85
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 24.4 bits (52), Expect = 4.2
Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 5/65 (7%)
Query: 75 PNHKRCIVILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNN-----SWYITFENDEDA 129
N + + IP S ++ G NN + F+N++DA
Sbjct: 4 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDA 63
Query: 130 QKAYR 134
+K+ R
Sbjct: 64 RKSER 68
>d1tr9a_ c.1.8.7 (A:) Beta-hexosaminidase NagZ {Vibrio cholerae
[TaxId: 666]}
Length = 330
Score = 24.6 bits (52), Expect = 5.4
Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 38 VANFNQVKKLTKDIKLITEVLRESPNVQVDEEGIKVRPNHKRC 80
+ Q+ L K I+ + + + VD+EG +V+ +
Sbjct: 37 YHDNQQLLALNKAIR---QAAKRPILIGVDQEGGRVQRFREGF 76
>d1pxva_ d.3.1.1 (A:) Staphopain SspB {Staphylococcus aureus [TaxId:
1280]}
Length = 183
Score = 24.5 bits (53), Expect = 5.6
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 22 YLLSQMDNDQYVPIWTVANFNQVKKLTKD---IKLITEVLRESPNVQVDEEGIKVRPNHK 78
Y SQ + Y V ++NQV +LTKD I ++ + + ++PN + V N K
Sbjct: 82 YGKSQGRDIHY--QEGVPSYNQVDQLTKDNVGIMILAQSVSQNPNDPHLGHALAVVGNAK 139
Query: 79 R 79
Sbjct: 140 I 140
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 23.9 bits (51), Expect = 6.5
Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 5/60 (8%)
Query: 82 VILREIPDSTPLEEIRGLFSGKSCPRFISCEFAHNNSW-----YITFENDEDAQKAYRYL 136
V + IP E+++ +FS + + +++ E A A R L
Sbjct: 11 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 70
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 81
Score = 23.4 bits (50), Expect = 6.7
Identities = 7/48 (14%), Positives = 16/48 (33%), Gaps = 3/48 (6%)
Query: 94 EEIRGLFSGKSCPRFISCEFAHNNSW-YITFENDEDAQKAYRYLREDV 140
I F + ++ +W +I +++ A+KA
Sbjct: 18 SYILLQF--AQYGNILKHVMSNTGNWMHIRYQSKLQARKALSKDGRIF 63
>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 40
Score = 22.0 bits (47), Expect = 9.9
Identities = 5/16 (31%), Positives = 6/16 (37%)
Query: 101 SGKSCPRFISCEFAHN 116
C C+FAH
Sbjct: 17 ESGRCRYGAKCQFAHG 32
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.135 0.411
Gapped
Lambda K H
0.267 0.0553 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 577,005
Number of extensions: 26403
Number of successful extensions: 146
Number of sequences better than 10.0: 1
Number of HSP's gapped: 143
Number of HSP's successfully gapped: 66
Length of query: 149
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 72
Effective length of database: 1,350,386
Effective search space: 97227792
Effective search space used: 97227792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.1 bits)