Query psy16302
Match_columns 273
No_of_seqs 132 out of 294
Neff 6.0
Searched_HMMs 46136
Date Fri Aug 16 17:53:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16302.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16302hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3114|consensus 100.0 6.3E-55 1.4E-59 398.5 19.7 209 53-266 72-286 (290)
2 KOG2946|consensus 99.5 5.5E-14 1.2E-18 124.5 11.3 145 66-234 68-215 (234)
3 KOG3103|consensus 99.2 9E-11 2E-15 105.2 11.1 153 65-246 88-244 (249)
4 PF04893 Yip1: Yip1 domain; I 99.0 1.4E-08 3E-13 84.8 15.5 149 65-228 1-153 (172)
5 COG5080 YIP1 Rab GTPase intera 99.0 9E-10 2E-14 97.2 8.4 133 67-228 67-201 (227)
6 PF03878 YIF1: YIF1; InterPro 98.9 5.7E-08 1.2E-12 88.4 16.3 156 54-224 32-198 (240)
7 COG5197 Predicted membrane pro 98.3 4E-06 8.7E-11 75.0 9.6 155 55-224 77-242 (284)
8 KOG3094|consensus 98.1 9.2E-05 2E-09 67.8 14.9 180 54-248 79-281 (284)
9 PF06930 DUF1282: Protein of u 95.8 0.51 1.1E-05 40.4 14.6 134 92-225 11-146 (170)
10 PF10348 DUF2427: Domain of un 85.5 4.6 9.9E-05 32.3 7.3 83 138-251 17-104 (105)
11 PF05251 UPF0197: Uncharacteri 58.2 72 0.0016 24.3 7.2 52 201-252 17-71 (77)
12 PF14936 p53-inducible11: Tumo 56.1 1.1E+02 0.0025 26.8 9.0 81 178-260 93-177 (179)
13 PF08006 DUF1700: Protein of u 48.5 1.7E+02 0.0036 25.0 9.1 20 57-76 25-50 (181)
14 PF05924 SAMP: SAMP Motif; In 37.4 24 0.00053 20.1 1.4 18 68-85 1-18 (20)
15 PF05297 Herpes_LMP1: Herpesvi 35.5 12 0.00027 35.4 0.0 14 149-162 29-42 (381)
16 KOG4783|consensus 28.8 3E+02 0.0066 22.0 7.5 25 234-258 70-94 (102)
17 KOG1277|consensus 27.9 2.2E+02 0.0049 29.0 7.2 150 106-260 329-515 (593)
18 PF14159 CAAD: CAAD domains of 25.0 1.5E+02 0.0032 23.0 4.4 41 186-226 30-71 (90)
19 PF10716 NdhL: NADH dehydrogen 21.1 2E+02 0.0043 22.2 4.3 49 141-196 19-69 (81)
20 PF11285 DUF3086: Protein of u 20.4 38 0.00083 31.6 0.3 33 60-106 104-136 (283)
21 PF11744 ALMT: Aluminium activ 20.1 2.4E+02 0.0051 27.9 5.8 73 182-255 120-203 (406)
No 1
>KOG3114|consensus
Probab=100.00 E-value=6.3e-55 Score=398.51 Aligned_cols=209 Identities=42% Similarity=0.759 Sum_probs=186.6
Q ss_pred CcceeeecccccccCChHHHHHHhhhccccCCCCchhhhhcCCCCCcchhHHHHHHHHHHHHHHhhHHHHHhhhccCCce
Q psy16302 53 PSQWSFEYFQRFFDVDTDTVISRIKGSVYPKFGDNYLQTYIQSKPDLYGPFWVCVTLIITIAISGNIANYLQAAATHKYH 132 (273)
Q Consensus 53 ~~~~sl~yYq~yFdVdT~~V~~Rl~~sl~P~~~~~f~~~~i~~~pDLYGPfWI~~TLIf~l~i~~nl~~~l~~~~~~~~~ 132 (273)
-++|+++||||||||||.||++||++||+| .|++++.++.|||||||||||+||||+++++||+.+|+++......+
T Consensus 72 ~~~~ti~yyq~fFdVDt~qV~~Rl~~SliP---~~~~~~~~~~~PDLYGPfWI~~TlVf~l~~~g~~~~~i~~~t~~g~~ 148 (290)
T KOG3114|consen 72 LSFFTIEYYQPFFDVDTAQVRKRLKESLIP---RNYVRDQIQDNPDLYGPFWITATLVFALAISGNLATFIRNGTLKGTA 148 (290)
T ss_pred cccccHHhhccccCCCHHHHHHHHHHhcCC---ccccccccCCCccccccHHHHHHHHHHHHHcccHHHHHHhcccccee
Confidence 358999999999999999999999999999 34577889999999999999999999999999999999987665569
Q ss_pred eeeeechhhhHHHHHHHHHHHHHHHHHHHHHHccCcc-cccchHHHHHHHHhhchhhHHHHHHHHHhhHHHHHHHHHHHH
Q psy16302 133 WKYDFHAISTSATAIFSYAWLLPVLVWGYLKYQNDSE-VVNLSILELLCVYGYSLSIYIPIAILWVIQVGFLQVTLVLIG 211 (273)
Q Consensus 133 ~~~df~~v~~a~~liy~Y~~lvPl~l~~~lk~~~~~~-~~~~s~~~liclYGYSl~i~IPvslL~~ip~~~l~Wilv~~g 211 (273)
|.|||+++++|++.||+|++++|+++|++++|++.++ ..-.++.|++|+||||+++|||+.+++++|..++||++++.|
T Consensus 149 ~g~~f~~v~saa~~iy~Y~~ivp~~l~~iL~~~~~~~~~~~~~l~~~~~iygysl~i~ip~~vl~iv~~~~~~wvl~~~~ 228 (290)
T KOG3114|consen 149 YGYDFGLVTSAATLIYGYLTIVPLALWGILSWNGYSLLLHCYVLLELVCIYGYSLFIFIPLLVLWIVPSSMVQWVLVGTA 228 (290)
T ss_pred eecccchHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceehhhHHHHHhhHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999432 113578999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccccC-----CchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCcc
Q psy16302 212 ALLSGYILITSLLPAFRQ-----PNILPLVVLGGLHFLLALGLMLYFFHITRRNVQTTSI 266 (273)
Q Consensus 212 ~~~S~~fl~~~l~~~~~~-----k~~l~~~~i~~lH~~l~l~~kl~FF~~~~~~~~~~~~ 266 (273)
+..|+.++..+++|..+. +...++..++++|+++|+++|+|||+ ...|.+.++
T Consensus 229 ~~~S~~~L~~~l~p~~~~~~~~~~a~~~iv~ivllh~lla~~~~lyfF~--~~~p~~~a~ 286 (290)
T KOG3114|consen 229 LGLSGTFLAGTLWPAVRLDGILHFAFLLIVEIVLLHLLLALGFKLYFFD--ARLPVTVAN 286 (290)
T ss_pred HHHhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhccceeEEec--ccccccccc
Confidence 999999999999998773 23356678899999999999999999 444544444
No 2
>KOG2946|consensus
Probab=99.54 E-value=5.5e-14 Score=124.46 Aligned_cols=145 Identities=25% Similarity=0.399 Sum_probs=113.1
Q ss_pred cCChHHHHHHhhhccccCCCCchhhhhcCCCCCcchhHHHHHHHHHHHHHHhhHHHHHhhhccCCceeeeeechhhhHHH
Q psy16302 66 DVDTDTVISRIKGSVYPKFGDNYLQTYIQSKPDLYGPFWVCVTLIITIAISGNIANYLQAAATHKYHWKYDFHAISTSAT 145 (273)
Q Consensus 66 dVdT~~V~~Rl~~sl~P~~~~~f~~~~i~~~pDLYGPfWI~~TLIf~l~i~~nl~~~l~~~~~~~~~~~~df~~v~~a~~ 145 (273)
+-|-.+|..|+++.+.|++...-..+.+ +.+|||||+-+|+-+.+++..++. ..+ ... ++
T Consensus 68 krD~~~I~~kl~~Vl~P~py~~dk~~~l-RDwDlWGPl~~~~~la~iL~~s~~-----------~~~-~~v-------Fs 127 (234)
T KOG2946|consen 68 KRDLRAIGSKLKHVLYPHPYFEDKGQLL-RDWDLWGPLFFCVFLALILSLSGS-----------VKS-ASV-------FA 127 (234)
T ss_pred HHHHHHHHhceEEEEccCCCccccccee-ecccccchhHHHHHHHHHHHhhcC-----------ccc-chh-------HH
Confidence 4577889999999999984210011233 567999999999999888776551 111 011 46
Q ss_pred HHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHhhchhhHHHHH-HHHHh-hHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16302 146 AIFSYAWLLPVLVWGYLKYQNDSEVVNLSILELLCVYGYSLSIYIPIA-ILWVI-QVGFLQVTLVLIGALLSGYILITSL 223 (273)
Q Consensus 146 liy~Y~~lvPl~l~~~lk~~~~~~~~~~s~~~liclYGYSl~i~IPvs-lL~~i-p~~~l~Wilv~~g~~~S~~fl~~~l 223 (273)
.+|+.+|.+.++++++.|.+|+ +++++|.+|+.|||+++....+ +.|.. +...+|-++..+|.+||.+.....+
T Consensus 128 ~vf~i~wfG~~vvtln~kLLGg----nIs~fQsl~IlGYCLfPl~v~ali~~~~~~l~~lr~vv~~~~~~WSsyaa~~~l 203 (234)
T KOG2946|consen 128 VVFAILWFGAVVVTLNIKLLGG----NISFFQSLCILGYCLFPLVVAALIICLFRDLFFLRLVVTSIGLAWSSYAAMGFL 203 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC----ceeEEeehhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 7889999999999999999998 7999999999999999988886 56666 6788999999999999999988888
Q ss_pred cccccC-CchHH
Q psy16302 224 LPAFRQ-PNILP 234 (273)
Q Consensus 224 ~~~~~~-k~~l~ 234 (273)
...... ||.+.
T Consensus 204 ~~~~~~~kk~La 215 (234)
T KOG2946|consen 204 SISQLPRKKLLA 215 (234)
T ss_pred hcccccccccee
Confidence 776655 55543
No 3
>KOG3103|consensus
Probab=99.22 E-value=9e-11 Score=105.15 Aligned_cols=153 Identities=19% Similarity=0.292 Sum_probs=116.5
Q ss_pred ccCChHHHHHHhhhccccCCCCchhhhhcCCCCCcchhHHHHHHHHHHHHHHhhHHHHHhhhccCCceeeeeechhhhHH
Q psy16302 65 FDVDTDTVISRIKGSVYPKFGDNYLQTYIQSKPDLYGPFWVCVTLIITIAISGNIANYLQAAATHKYHWKYDFHAISTSA 144 (273)
Q Consensus 65 FdVdT~~V~~Rl~~sl~P~~~~~f~~~~i~~~pDLYGPfWI~~TLIf~l~i~~nl~~~l~~~~~~~~~~~~df~~v~~a~ 144 (273)
-++|-+++++|.+.++.|.+..+ ..+.+++||+||+-.|..+-..+...+ |.| |
T Consensus 88 LgInf~hI~~KT~~VLnP~r~~~---q~i~~d~DlaGPlvf~L~f~~flLl~g------------Ki~----F------- 141 (249)
T KOG3103|consen 88 LGINFDHIKQKTRAVLNPFRSAD---QSIMKDTDLAGPLVFCLLFGLFLLLAG------------KIH----F------- 141 (249)
T ss_pred hCCCHHHHHHHHhheecccccCc---eEEecCcccccchHHHHHHHHHHHhcC------------ceE----E-------
Confidence 46999999999999999998753 355689999999988888766554433 222 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHhhchhhHHHHHHHHHh-h-HHHHHHHHHHHHHHHHHHHHHHH
Q psy16302 145 TAIFSYAWLLPVLVWGYLKYQNDSEVVNLSILELLCVYGYSLSIYIPIAILWVI-Q-VGFLQVTLVLIGALLSGYILITS 222 (273)
Q Consensus 145 ~liy~Y~~lvPl~l~~~lk~~~~~~~~~~s~~~liclYGYSl~i~IPvslL~~i-p-~~~l~Wilv~~g~~~S~~fl~~~ 222 (273)
+.|||.+.++.+-++.+++..+.. ++++.++.++.|||+.+.+.++.+.++ + ...++.++-+++.+|+++.-..-
T Consensus 142 gyIygi~~~gsl~iy~L~nlm~~~---nv~f~~~aSVlGYcLLPlvvlS~v~i~~~~~g~vg~il~~~~v~W~t~aaS~l 218 (249)
T KOG3103|consen 142 GYIYGISLLGSLSIYFLLNLMSNK---NVSFGCVASVLGYCLLPLVVLSFVNIFVGLQGTVGYILSALFVLWCTYAASKL 218 (249)
T ss_pred EEEeeeHHHHHHHHHHHHHHHhhc---CcceeeehHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence 237888889999999999988832 689999999999999888777777666 3 46799999999999999888777
Q ss_pred hccccc--CCchHHHHHHHHHHHHHH
Q psy16302 223 LLPAFR--QPNILPLVVLGGLHFLLA 246 (273)
Q Consensus 223 l~~~~~--~k~~l~~~~i~~lH~~l~ 246 (273)
+...++ ++|.++.=.++.+-.+|+
T Consensus 219 fv~al~~~~~rlLiaYp~~l~Y~~Fa 244 (249)
T KOG3103|consen 219 FVSALSMENQRLLVAYPCALLYGVFA 244 (249)
T ss_pred HHHHhhccccchhhhhHHHHHHhhhe
Confidence 766544 356555434444444443
No 4
>PF04893 Yip1: Yip1 domain; InterPro: IPR006977 This entry contains proteins belonging to the Yip1 family and represents the Yip1 domain. The Yip1 integral membrane domain contains four transmembrane alpha helices. The domain is characterised by the motifs DLYGP and GY. The Yip1 protein is a golgi protein involved in vesicular transport that interacts with GTPases [].; GO: 0016020 membrane
Probab=99.03 E-value=1.4e-08 Score=84.76 Aligned_cols=149 Identities=19% Similarity=0.212 Sum_probs=103.5
Q ss_pred ccCChHHHHHHhhhccccCCCCchhhhhcCCCCCcchhHHHHHHHHHHHHHHhhHHHHHhhhccC-CceeeeeechhhhH
Q psy16302 65 FDVDTDTVISRIKGSVYPKFGDNYLQTYIQSKPDLYGPFWVCVTLIITIAISGNIANYLQAAATH-KYHWKYDFHAISTS 143 (273)
Q Consensus 65 FdVdT~~V~~Rl~~sl~P~~~~~f~~~~i~~~pDLYGPfWI~~TLIf~l~i~~nl~~~l~~~~~~-~~~~~~df~~v~~a 143 (273)
+.+|+++..+|+++.-. .++++|+|+++|+..++++.+..+.+...++.+.... ..++..-+.....+
T Consensus 1 vl~~P~~~f~~~~~~~~-----------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (172)
T PF04893_consen 1 VLFSPREFFRRLRESPR-----------ISKSWWLPLLLVILLTLVFGLLSSLNIPWYVDSGGSAYMFSFGSLLGSIIGG 69 (172)
T ss_pred CccCHHHHHHHHHhccc-----------cchhHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhhhhHHHHHHHHHH
Confidence 35788888888875433 2356899999999999999999998877777543100 01111111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHhhchhhHHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHHH
Q psy16302 144 ATAIFSYAWLLPVLVWGYLKYQNDSEVVNLSILELLCVYGYSLSIYIPIAILWVIQVGF---LQVTLVLIGALLSGYILI 220 (273)
Q Consensus 144 ~~liy~Y~~lvPl~l~~~lk~~~~~~~~~~s~~~liclYGYSl~i~IPvslL~~ip~~~---l~Wilv~~g~~~S~~fl~ 220 (273)
......-.++.+.++|.++|+.++ +.++.|++|++|||.++.+...+++.+.... ....+..++.+|+...+.
T Consensus 70 ~~~~~i~~~i~~~~~~~~~~~~gg----~~~~~~~~~~~~ya~~P~~~~~~~~~~~~~~~~~~~~~~~~l~~iw~~~l~~ 145 (172)
T PF04893_consen 70 FIIILIGWFILALILHLIAKLFGG----KGSFKETFSVVGYALIPLLLGSLISIILSLFFGPLSLLVIILFSIWSAYLLV 145 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222235567888899999999987 5789999999999998888888777764322 455778888999998888
Q ss_pred HHhccccc
Q psy16302 221 TSLLPAFR 228 (273)
Q Consensus 221 ~~l~~~~~ 228 (273)
.-+...-+
T Consensus 146 ~gl~~~~~ 153 (172)
T PF04893_consen 146 IGLREVHR 153 (172)
T ss_pred HHHHHHhC
Confidence 88776544
No 5
>COG5080 YIP1 Rab GTPase interacting factor, Golgi membrane protein [Intracellular trafficking and secretion]
Probab=99.03 E-value=9e-10 Score=97.21 Aligned_cols=133 Identities=19% Similarity=0.236 Sum_probs=98.0
Q ss_pred CChHHHHHHhhhccccCCCCchhhhhcCCCCCcchhHHHHHHHHHHHHHHhhHHHHHhhhccCCceeeeeechhhhHHHH
Q psy16302 67 VDTDTVISRIKGSVYPKFGDNYLQTYIQSKPDLYGPFWVCVTLIITIAISGNIANYLQAAATHKYHWKYDFHAISTSATA 146 (273)
Q Consensus 67 VdT~~V~~Rl~~sl~P~~~~~f~~~~i~~~pDLYGPfWI~~TLIf~l~i~~nl~~~l~~~~~~~~~~~~df~~v~~a~~l 146 (273)
++-..+++|...++.|.+.+. .++-+|.|||||+-.+. .+.++.+- + ++.| ++.
T Consensus 67 i~F~~i~~ks~~vl~p~~~~~---~~i~~d~DL~gPliF~l--L~sLfLsl--------a--~~sh-----------Fgy 120 (227)
T COG5080 67 INFGHIKSKSDDVLGPFDNKA---FDILADCDLWGPLIFIL--LYSLFLSL--------A--GKSH-----------FGY 120 (227)
T ss_pred ccccccccccceeeecccccc---hhhhhcccccccHHHHH--HHHHHHHh--------c--ccce-----------eeh
Confidence 344567788888888876543 23458999999975543 34444322 1 1222 345
Q ss_pred HHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHhhchhhHHHHHHHHHh-h-HHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16302 147 IFSYAWLLPVLVWGYLKYQNDSEVVNLSILELLCVYGYSLSIYIPIAILWVI-Q-VGFLQVTLVLIGALLSGYILITSLL 224 (273)
Q Consensus 147 iy~Y~~lvPl~l~~~lk~~~~~~~~~~s~~~liclYGYSl~i~IPvslL~~i-p-~~~l~Wilv~~g~~~S~~fl~~~l~ 224 (273)
+|+..|.+-+.+...+|..+. .++++++.+|+.|||+++.+..+++|.+ + +.+.--++++++.+||.+..-..+.
T Consensus 121 iy~islfg~lsl~~~lrLl~~---~ni~f~~~~SIlGYs~lPlv~~slv~~i~~~i~i~~~vv~~l~~~Ws~~AaS~v~~ 197 (227)
T COG5080 121 IYGISLFGTLSLHLLLRLLGH---KNISFFSTISILGYSLLPLVFNSLVSIILGRILILGYVVVALFLIWSTYAASGVLK 197 (227)
T ss_pred hhHHHHHHHHHHHHHHHHhcc---CceeeeehhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999984 2699999999999999999999999988 2 4556667777788999988777776
Q ss_pred cccc
Q psy16302 225 PAFR 228 (273)
Q Consensus 225 ~~~~ 228 (273)
..++
T Consensus 198 ~~l~ 201 (227)
T COG5080 198 SKLQ 201 (227)
T ss_pred HHHh
Confidence 4433
No 6
>PF03878 YIF1: YIF1; InterPro: IPR005578 This family includes a number of eukaryotic proteins. It is an integral membrane protein, conserved in at least 1 copy in all sequenced eukaryotes. The gene name in Schizosaccharomyces pombe (Fission yeast) is hrf1+ for Heavy metal Resistance Factor 1.
Probab=98.92 E-value=5.7e-08 Score=88.41 Aligned_cols=156 Identities=20% Similarity=0.296 Sum_probs=110.0
Q ss_pred cceeeecccccccCChHHHHHHhhhccccCCCCch-----------hhhhcCCCCCcchhHHHHHHHHHHHHHHhhHHHH
Q psy16302 54 SQWSFEYFQRFFDVDTDTVISRIKGSVYPKFGDNY-----------LQTYIQSKPDLYGPFWVCVTLIITIAISGNIANY 122 (273)
Q Consensus 54 ~~~sl~yYq~yFdVdT~~V~~Rl~~sl~P~~~~~f-----------~~~~i~~~pDLYGPfWI~~TLIf~l~i~~nl~~~ 122 (273)
.+.+.+-.+.|||||++=|++|++--+.|...++. .++.+ +-||||=|++-..|-|.+.++...+
T Consensus 32 ~~~~~~~lk~YF~V~n~YV~~KL~lllfPf~~k~W~r~~~~~~~~~Pr~Dv-NAPDLYIPlMa~vTYiLl~g~~~G~--- 107 (240)
T PF03878_consen 32 RYVSVSSLKYYFAVDNSYVLKKLKLLLFPFLHKDWSRKYEQESYLPPREDV-NAPDLYIPLMAFVTYILLSGLILGL--- 107 (240)
T ss_pred hhcCcccceeeEECCHHHHHHHHHHeecccccCCccccccccCCCCchhhc-cCcccccchHHHHHHHHHHHHHHHh---
Confidence 44555668999999999999999999999764321 12333 4599999999999999877654321
Q ss_pred HhhhccCCceeeeeechhhhHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHhhchhhHHHHHHHHHhhHHH
Q psy16302 123 LQAAATHKYHWKYDFHAISTSATAIFSYAWLLPVLVWGYLKYQNDSEVVNLSILELLCVYGYSLSIYIPIAILWVIQVGF 202 (273)
Q Consensus 123 l~~~~~~~~~~~~df~~v~~a~~liy~Y~~lvPl~l~~~lk~~~~~~~~~~s~~~liclYGYSl~i~IPvslL~~ip~~~ 202 (273)
. .++++ +.+...++-..+.+++==++++..+..++.+ .+.++.|++|.-||..+..|...+...+-..+
T Consensus 108 ----~---g~F~P--e~Lg~~~s~al~~~~lEv~i~k~~~y~l~~~--~~~~~lDlvay~GYKfv~ii~~~l~~~l~~~~ 176 (240)
T PF03878_consen 108 ----Q---GRFSP--ELLGIQASSALVWWFLEVLIIKLGLYLLNIS--SSLPILDLVAYSGYKFVGIILTLLASLLFGSW 176 (240)
T ss_pred ----c---CCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCCHHHHHHhhcchHHHHHHHHHHHHHcccH
Confidence 1 12233 2344444445555555555666666666652 35899999999999996665555555554458
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q psy16302 203 LQVTLVLIGALLSGYILITSLL 224 (273)
Q Consensus 203 l~Wilv~~g~~~S~~fl~~~l~ 224 (273)
.-|+..+...+-.+.|++|.++
T Consensus 177 ~yy~~~ly~~~a~~~Fl~RsLk 198 (240)
T PF03878_consen 177 VYYIALLYTSFANAFFLLRSLK 198 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999886
No 7
>COG5197 Predicted membrane protein [Function unknown]
Probab=98.31 E-value=4e-06 Score=75.02 Aligned_cols=155 Identities=21% Similarity=0.281 Sum_probs=94.5
Q ss_pred ceeeecccccccCChHHHHHHhhhccccCCCCchh-----------hhhcCCCCCcchhHHHHHHHHHHHHHHhhHHHHH
Q psy16302 55 QWSFEYFQRFFDVDTDTVISRIKGSVYPKFGDNYL-----------QTYIQSKPDLYGPFWVCVTLIITIAISGNIANYL 123 (273)
Q Consensus 55 ~~sl~yYq~yFdVdT~~V~~Rl~~sl~P~~~~~f~-----------~~~i~~~pDLYGPfWI~~TLIf~l~i~~nl~~~l 123 (273)
..+..-.+.|||||++=|.+|++--+.|+..++.- ++.+ +.||+|=|.+-.+|-|.+...-..+..-.
T Consensus 77 ~~s~~~~~tYF~V~n~yVi~KL~LIlfPf~nk~W~r~gd~eg~~pp~~d~-nsPdmY~P~M~fvtyILl~~~~~GL~g~F 155 (284)
T COG5197 77 AASSQQISTYFQVSNRYVINKLKLILFPFLNKNWQRIGDSEGFLPPRDDV-NSPDMYMPIMGFVTYILLWNTQQGLKGSF 155 (284)
T ss_pred cccccceeEEEEechHhHHhhhheEEeecccchhhhccCCCCCCCchhhc-CCccccchHHHHHHHHHHHHHHhhcccCC
Confidence 34666778999999999999999999998754432 2223 57999999999999988876533221111
Q ss_pred hhhccCCceeeeeechhhhHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHhhchhhHHHHHHHHHhhHHHH
Q psy16302 124 QAAATHKYHWKYDFHAISTSATAIFSYAWLLPVLVWGYLKYQNDSEVVNLSILELLCVYGYSLSIYIPIAILWVIQVGFL 203 (273)
Q Consensus 124 ~~~~~~~~~~~~df~~v~~a~~liy~Y~~lvPl~l~~~lk~~~~~~~~~~s~~~liclYGYSl~i~IPvslL~~ip~~~l 203 (273)
+ -.++.....+ -.+. .++-+++.-+.-|+-.. ....+++|++|.-||-.++.|...++-.+...|.
T Consensus 156 ~---------PE~lg~~~s~---~~a~-v~v~~l~trlg~Yll~~-s~~~~~ldllaysGYKfV~liL~qL~k~~~Mp~v 221 (284)
T COG5197 156 N---------PEDLGYKLSS---TLAF-VCVDLLITRLGLYLLID-SKIPSFLDLLAYSGYKFVPLILAQLLKNVTMPFV 221 (284)
T ss_pred C---------HHHhhHHHHH---HHHH-HHHHHHHHHhceEEEee-cccchhhhhhhhcccccHHHHHHHHhhhccccHH
Confidence 1 0122221111 1111 12333333333233211 1135789999999999977777776665544455
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q psy16302 204 QVTLVLIGALLSGYILITSLL 224 (273)
Q Consensus 204 ~Wilv~~g~~~S~~fl~~~l~ 224 (273)
.-++...-.+.-+.|+.+.++
T Consensus 222 ~~i~~~Ylyiaf~vFLlRSlK 242 (284)
T COG5197 222 LNILIFYLYIAFGVFLLRSLK 242 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555555555556677777775
No 8
>KOG3094|consensus
Probab=98.15 E-value=9.2e-05 Score=67.77 Aligned_cols=180 Identities=21% Similarity=0.289 Sum_probs=106.1
Q ss_pred cceeeecccccccCChHHHHHHhhhccccCCCCchh-----------hhhcCCCCCcchhHHHHHHHHHHHHHHhhHHHH
Q psy16302 54 SQWSFEYFQRFFDVDTDTVISRIKGSVYPKFGDNYL-----------QTYIQSKPDLYGPFWVCVTLIITIAISGNIANY 122 (273)
Q Consensus 54 ~~~sl~yYq~yFdVdT~~V~~Rl~~sl~P~~~~~f~-----------~~~i~~~pDLYGPfWI~~TLIf~l~i~~nl~~~ 122 (273)
++.+-.-.+-||+||+.=|.+|++-.+.|+..++.- ++.+ +.||||=|.+-.+|-|.+....-.+
T Consensus 79 k~~~~~~l~yYF~Vdn~YV~~KL~lilfPf~hk~W~~~~~~~~~~PPr~Dv-NaPDLYiP~MafiTYIll~gl~lGl--- 154 (284)
T KOG3094|consen 79 KYVSVPKLKYYFAVDNAYVGKKLKLILFPFLHKDWTRIYERESPLPPRYDV-NAPDLYIPLMAFITYILLAGLLLGL--- 154 (284)
T ss_pred hhccCccceEEEEechHHHhhhheEEEeeecCcchhhhhcccCCCCccccC-CCcchhhhHHHHHHHHHHHHHHhhh---
Confidence 344444567899999999999999999997643321 1223 5699999999999998876553321
Q ss_pred HhhhccCCceeeeeechhhhHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHhhchhhHHHHHHHHHhhHHH
Q psy16302 123 LQAAATHKYHWKYDFHAISTSATAIFSYAWLLPVLVWGYLKYQNDSEVVNLSILELLCVYGYSLSIYIPIAILWVIQVGF 202 (273)
Q Consensus 123 l~~~~~~~~~~~~df~~v~~a~~liy~Y~~lvPl~l~~~lk~~~~~~~~~~s~~~liclYGYSl~i~IPvslL~~ip~~~ 202 (273)
+ ..++.+ .+.+-++--..++ ++=+++..+..|+-+.+ ...+.++++|.-||-.+..|...+.-++-.++
T Consensus 155 -q------g~FsPE--~Lg~~~s~al~~v-~le~l~l~l~lY~l~vs-~~ls~ldllAysGYKfv~liL~~L~k~~~~~~ 223 (284)
T KOG3094|consen 155 -Q------GRFSPE--ALGILASKALAWV-ILEVLLLKLGLYLLNVS-SSLSTLDLLAYSGYKFVGLILAQLTKLLFGPY 223 (284)
T ss_pred -c------cCCCHH--HHHHHHHHHHHHH-HHHHHHHHHHHheeccc-CCcchhHhhhhcccchHHHHHHHHhhheecch
Confidence 1 112222 1222122222222 33344444444443321 25799999999999997777666655553333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccc------c-----C-CchHHHHHHHHHHHHHHHH
Q psy16302 203 LQVTLVLIGALLSGYILITSLLPAF------R-----Q-PNILPLVVLGGLHFLLALG 248 (273)
Q Consensus 203 l~Wilv~~g~~~S~~fl~~~l~~~~------~-----~-k~~l~~~~i~~lH~~l~l~ 248 (273)
...++...-.+--+.|++|.++-.+ . . |+.-.+..+++.+..+...
T Consensus 224 ~yyi~~~yt~~a~gvFLlRSlK~~ll~~~~~~~~v~q~~r~~YfLf~ia~~Q~~~l~w 281 (284)
T KOG3094|consen 224 GYYIALAYTYLAFGVFLLRSLKRALLAESSMADPVPQSSRRLYFLFFIAAVQFLILYW 281 (284)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCccchhhhhHHHHHHHHHHHHHHHHH
Confidence 4444444444455677888776332 1 1 3334445566666665543
No 9
>PF06930 DUF1282: Protein of unknown function (DUF1282); InterPro: IPR009698 This entry represents several hypothetical proteins of around 200 residues in length. The function of is unknown although a number of the members are thought to be putative membrane proteins.
Probab=95.84 E-value=0.51 Score=40.36 Aligned_cols=134 Identities=12% Similarity=0.037 Sum_probs=75.0
Q ss_pred hcCCCCCcchhHHHHHHHHHHHH--HHhhHHHHHhhhccCCceeeeeechhhhHHHHHHHHHHHHHHHHHHHHHHccCcc
Q psy16302 92 YIQSKPDLYGPFWVCVTLIITIA--ISGNIANYLQAAATHKYHWKYDFHAISTSATAIFSYAWLLPVLVWGYLKYQNDSE 169 (273)
Q Consensus 92 ~i~~~pDLYGPfWI~~TLIf~l~--i~~nl~~~l~~~~~~~~~~~~df~~v~~a~~liy~Y~~lvPl~l~~~lk~~~~~~ 169 (273)
.++++.+-.+.++...-+.+.+. ++....+.-.+.+..+.+-..+++........+..|.+++=.+...+.+|..+..
T Consensus 11 ~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~a~~i~~~~~~~ 90 (170)
T PF06930_consen 11 RIKREHESSWALYLVHVLLLALIPVVCFFIGTTQWGWFVGNGEGIVKLTLASALIIAVIFYIFGGVFIMAYLIHWMMKTF 90 (170)
T ss_pred HHHHcCCchhHHHHHHHHHHHHHHHHHHHHhccHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45666677777666555554442 1111111100001111100112333333334444555552223333345544332
Q ss_pred cccchHHHHHHHHhhchhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy16302 170 VVNLSILELLCVYGYSLSIYIPIAILWVIQVGFLQVTLVLIGALLSGYILITSLLP 225 (273)
Q Consensus 170 ~~~~s~~~liclYGYSl~i~IPvslL~~ip~~~l~Wilv~~g~~~S~~fl~~~l~~ 225 (273)
+.+.++-|++-..||+.++.....++..+|..|+--....++..|+...++.-+..
T Consensus 91 ~~~~s~~~~~~~a~y~~tPl~L~~i~~~~~~~~l~~~~~~~~~~~~~~Lly~Gv~~ 146 (170)
T PF06930_consen 91 GGRPSYKKCLAFAAYAATPLFLGGIVNLYPSLWLTLLVGLIALIYSVYLLYLGVPI 146 (170)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23568999999999999988888888888877666667788888999888777653
No 10
>PF10348 DUF2427: Domain of unknown function (DUF2427); InterPro: IPR018825 This entry represents the N-terminal region of a family of proteins conserved in fungi. Several of these proteins are annotated as being Ftp1 but this could not be confirmed. Their function is not known.
Probab=85.51 E-value=4.6 Score=32.30 Aligned_cols=83 Identities=18% Similarity=0.251 Sum_probs=50.4
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHhhchhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy16302 138 HAISTSATAIFSYAWLLPVLVWGYLKYQNDSEVVNLSILELLCVYGYSLSIYIPIAILWVIQVGFLQVTLVLIGALLSGY 217 (273)
Q Consensus 138 ~~v~~a~~liy~Y~~lvPl~l~~~lk~~~~~~~~~~s~~~liclYGYSl~i~IPvslL~~ip~~~l~Wilv~~g~~~S~~ 217 (273)
-...+.+....+++++.|+.+- +.-.++ + |-+|...+..++.++|.+....
T Consensus 17 ~l~~Hi~lm~la~~il~Pi~lv--L~~~~s------r---------------------~~~~~q~~~~~l~~~g~~~g~~ 67 (105)
T PF10348_consen 17 ALYAHIVLMTLAWVILYPIGLV--LGNARS------R---------------------WHLPVQTVFLVLMILGLFLGSV 67 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHccc------h---------------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 4557778888888888888764 222222 1 1233444555666666665554
Q ss_pred HHHHHhcccc-cC----CchHHHHHHHHHHHHHHHHHHH
Q psy16302 218 ILITSLLPAF-RQ----PNILPLVVLGGLHFLLALGLML 251 (273)
Q Consensus 218 fl~~~l~~~~-~~----k~~l~~~~i~~lH~~l~l~~kl 251 (273)
+ ..-.|++ .+ |...++..+..+|.++++..|+
T Consensus 68 ~--~~~~p~lyp~n~H~k~g~il~~l~~~q~~~gv~~~~ 104 (105)
T PF10348_consen 68 Y--NGSTPDLYPNNAHGKMGWILFVLMIVQVILGVILKL 104 (105)
T ss_pred H--hcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3 3334444 22 3445666778889999998875
No 11
>PF05251 UPF0197: Uncharacterised protein family (UPF0197); InterPro: IPR007915 This family of proteins is functionally uncharacterised, but is thought to be a transmembrane protein.
Probab=58.21 E-value=72 Score=24.33 Aligned_cols=52 Identities=17% Similarity=0.312 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccCC---chHHHHHHHHHHHHHHHHHHHH
Q psy16302 201 GFLQVTLVLIGALLSGYILITSLLPAFRQP---NILPLVVLGGLHFLLALGLMLY 252 (273)
Q Consensus 201 ~~l~Wilv~~g~~~S~~fl~~~l~~~~~~k---~~l~~~~i~~lH~~l~l~~kl~ 252 (273)
+.+.-++.++|++.+++|...+....-++| |-+.++.++.+-++|...+-+.
T Consensus 17 p~La~vll~iGl~fta~Ffiyevts~k~~r~i~kEl~~a~vAS~flGfG~lFLlL 71 (77)
T PF05251_consen 17 PHLAVVLLAIGLFFTAWFFIYEVTSTKKTRSIAKELLIALVASLFLGFGSLFLLL 71 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 457778889999999999988876443322 3467778888888887776553
No 12
>PF14936 p53-inducible11: Tumour protein p53-inducible protein 11
Probab=56.15 E-value=1.1e+02 Score=26.77 Aligned_cols=81 Identities=22% Similarity=0.228 Sum_probs=51.3
Q ss_pred HHHHHhhchhhHHHHHHHHHh-h---HHHHHHHHHHHHHHHHHHHHHHHhcccccCCchHHHHHHHHHHHHHHHHHHHHh
Q psy16302 178 LLCVYGYSLSIYIPIAILWVI-Q---VGFLQVTLVLIGALLSGYILITSLLPAFRQPNILPLVVLGGLHFLLALGLMLYF 253 (273)
Q Consensus 178 liclYGYSl~i~IPvslL~~i-p---~~~l~Wilv~~g~~~S~~fl~~~l~~~~~~k~~l~~~~i~~lH~~l~l~~kl~F 253 (273)
.+=+||=+++.+ ..+.|.. + -.++||.+..=+.-.+.-+++..+.-...++...-..++...|+++++.=.-||
T Consensus 93 ~vRlyGgAL~s~--aLi~w~~l~t~ek~iIrwtLL~ea~y~~vq~~vtt~t~~e~~~~s~~~~llLisr~lf~liS~yyY 170 (179)
T PF14936_consen 93 PVRLYGGALLSI--ALIFWNALYTAEKAIIRWTLLSEACYFGVQFLVTTATLAEMGWLSNAALLLLISRLLFALISMYYY 170 (179)
T ss_pred eehhhhHHHHHH--HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHH
Confidence 345777776322 2233443 2 347899999888888888887766543333333333456777888888877777
Q ss_pred ccccCCC
Q psy16302 254 FHITRRN 260 (273)
Q Consensus 254 F~~~~~~ 260 (273)
++.+.++
T Consensus 171 y~~gr~p 177 (179)
T PF14936_consen 171 YQLGRRP 177 (179)
T ss_pred HHhcCCC
Confidence 7766544
No 13
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=48.55 E-value=1.7e+02 Score=25.00 Aligned_cols=20 Identities=25% Similarity=0.785 Sum_probs=14.6
Q ss_pred eeecccccccC------ChHHHHHHh
Q psy16302 57 SFEYFQRFFDV------DTDTVISRI 76 (273)
Q Consensus 57 sl~yYq~yFdV------dT~~V~~Rl 76 (273)
.++||+.|||- +.+|+.+++
T Consensus 25 ~l~~Y~e~f~d~~~~G~sEeeii~~L 50 (181)
T PF08006_consen 25 ILEYYEEYFDDAGEEGKSEEEIIAEL 50 (181)
T ss_pred HHHHHHHHHHHhhhCCCCHHHHHHHc
Confidence 37899999983 456666665
No 14
>PF05924 SAMP: SAMP Motif; InterPro: IPR009224 This short region is found repeated in the mid region of the adenomatous polyposis proteins (APCs). This motif binds axin [].; GO: 0008013 beta-catenin binding, 0016055 Wnt receptor signaling pathway; PDB: 1EMU_B 2RQU_B.
Probab=37.37 E-value=24 Score=20.12 Aligned_cols=18 Identities=33% Similarity=0.516 Sum_probs=11.3
Q ss_pred ChHHHHHHhhhccccCCC
Q psy16302 68 DTDTVISRIKGSVYPKFG 85 (273)
Q Consensus 68 dT~~V~~Rl~~sl~P~~~ 85 (273)
|.+|++++++.|-+|++.
T Consensus 1 d~deiL~~CI~sAmPk~~ 18 (20)
T PF05924_consen 1 DEDEILQECIGSAMPKRR 18 (20)
T ss_dssp --HHHHHHHHHCTS----
T ss_pred CHHHHHHHHHHHhccccc
Confidence 346999999999999753
No 15
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=35.50 E-value=12 Score=35.44 Aligned_cols=14 Identities=29% Similarity=0.702 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH
Q psy16302 149 SYAWLLPVLVWGYL 162 (273)
Q Consensus 149 ~Y~~lvPl~l~~~l 162 (273)
.-..++.+++|++.
T Consensus 29 ~llll~ail~w~~i 42 (381)
T PF05297_consen 29 LLLLLVAILVWFFI 42 (381)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHH
Confidence 34455566666554
No 16
>KOG4783|consensus
Probab=28.77 E-value=3e+02 Score=21.96 Aligned_cols=25 Identities=16% Similarity=0.281 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccC
Q psy16302 234 PLVVLGGLHFLLALGLMLYFFHITR 258 (273)
Q Consensus 234 ~~~~i~~lH~~l~l~~kl~FF~~~~ 258 (273)
-++.++++|+++.+.+--..++...
T Consensus 70 aI~aVVavHvalglyiy~A~~~~sr 94 (102)
T KOG4783|consen 70 AICAVVAVHVALGLYIYRAIYAKSR 94 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCc
Confidence 3567889999999888777776443
No 17
>KOG1277|consensus
Probab=27.90 E-value=2.2e+02 Score=29.00 Aligned_cols=150 Identities=16% Similarity=0.210 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHhhHHHHHhh---hccCCceeeeeechhhhHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHH
Q psy16302 106 CVTLIITIAISGNIANYLQA---AATHKYHWKYDFHAISTSATAIFSYAWLLPVLVWGYLKYQNDSEVVNLSILELLCVY 182 (273)
Q Consensus 106 ~~TLIf~l~i~~nl~~~l~~---~~~~~~~~~~df~~v~~a~~liy~Y~~lvPl~l~~~lk~~~~~~~~~~s~~~liclY 182 (273)
.+|+|++-+.++.++.|..+ ...+..+|. ..+...++++=+-.++.-+++=.+....+... .+++-.++-+.
T Consensus 329 ~saaI~vYAlTs~i~GY~~gs~Y~r~gG~~Wi---k~m~lta~Lfp~~~~~t~~~~N~vai~y~at~--AlPfgt~v~v~ 403 (593)
T KOG1277|consen 329 LSAAIVVYALTSPINGYVSGSFYARLGGRRWI---KNMLLTASLFPVPVFGTAFLLNTVAIAYGATA--ALPFGTIVVVL 403 (593)
T ss_pred HHHHHHHHHhcccccccccceeeehhccHHHH---HHHHHHhhhhhHHHHHHHHHHHHHHHHhcccc--ccCccchHHHH
Confidence 34555555555555555543 122344564 33344455555555555544444444444321 23443333333
Q ss_pred hhchhhHHHHHHHHHh------------------h--H---HHH--HHHHHHHHHHHHHHHHHHHhccccc---CCch--
Q psy16302 183 GYSLSIYIPIAILWVI------------------Q--V---GFL--QVTLVLIGALLSGYILITSLLPAFR---QPNI-- 232 (273)
Q Consensus 183 GYSl~i~IPvslL~~i------------------p--~---~~l--~Wilv~~g~~~S~~fl~~~l~~~~~---~k~~-- 232 (273)
==++++..|..++-.| | + .|. -|+..+.|+.+-...+...|+-... ++|+
T Consensus 404 ~iw~fv~~PL~~~G~i~GkN~~~~~~~PCR~~~~pR~Ip~~kWy~~~~~~~~~gG~LPFgsIfIEmYfIFtSfW~ykiYy 483 (593)
T KOG1277|consen 404 LIWLFVISPLTVLGGIAGKNRSGEFDAPCRTKAIPREIPPKKWYRSPLVIMLMGGFLPFGSIFIEMYFIFTSFWGYKIYY 483 (593)
T ss_pred HHHHHHhchHHHcccccccccccCCCCCcccccCCCCCCCccccccchHHHHhhccCccchhhhhHHHHHHHHhhhhHHH
Confidence 3344555677665443 1 2 232 2456777777666566555554433 2222
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHhccccCCC
Q psy16302 233 ----LPLVVLGGLHFLLALGLMLYFFHITRRN 260 (273)
Q Consensus 233 ----l~~~~i~~lH~~l~l~~kl~FF~~~~~~ 260 (273)
+++..++.+-+.-|+.+-.-+|+...++
T Consensus 484 vYgfm~lVf~IL~iVtvcvTIv~TYFlLnaED 515 (593)
T KOG1277|consen 484 VYGFMFLVFVILLIVTVCVTIVLTYFLLNAED 515 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhcccc
Confidence 3334455566666777777788766554
No 18
>PF14159 CAAD: CAAD domains of cyanobacterial aminoacyl-tRNA synthetase
Probab=25.02 E-value=1.5e+02 Score=23.03 Aligned_cols=41 Identities=27% Similarity=0.430 Sum_probs=27.7
Q ss_pred hhhHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16302 186 LSIYIPIAILWVI-QVGFLQVTLVLIGALLSGYILITSLLPA 226 (273)
Q Consensus 186 l~i~IPvslL~~i-p~~~l~Wilv~~g~~~S~~fl~~~l~~~ 226 (273)
.+.++-.+++..| .++.+.=++=++|.+++++|.++++...
T Consensus 30 v~l~v~~~vl~aIn~iPll~~llElvGlgyt~wF~~ryLL~~ 71 (90)
T PF14159_consen 30 VALWVSAAVLDAINSIPLLPGLLELVGLGYTGWFVYRYLLFA 71 (90)
T ss_pred HHHHHHHHHHHHHHcCcchHHHHHHHHHHHHhHHHHHHHcCh
Confidence 3344445555555 2444555667889999999999999754
No 19
>PF10716 NdhL: NADH dehydrogenase transmembrane subunit; InterPro: IPR019654 NAD(P)H-quinone oxidoreductase subunit L (NdhL) is a component of the NDH-1L complex that is one of the proton-pumping NADH:ubiquinone oxidoreductases that catalyse the electron transfer from NADH to ubiquinone linked with proton translocation across the membrane. NDH-1L is essential for photoheterotrophic cell growth. NdhL appears to contain two transmembrane helices and it is necessary for the functioning of though not the correct assembly of the NDH-1 complex in Synechocystis 6803. The conservation between cyanobacteria and green plants suggests that chloroplast NDH-1 complexes contain related subunits []. ; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0055114 oxidation-reduction process
Probab=21.13 E-value=2e+02 Score=22.17 Aligned_cols=49 Identities=18% Similarity=0.345 Sum_probs=33.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH--HccCcccccchHHHHHHHHhhchhhHHHHHHHH
Q psy16302 141 STSATAIFSYAWLLPVLVWGYLK--YQNDSEVVNLSILELLCVYGYSLSIYIPIAILW 196 (273)
Q Consensus 141 ~~a~~liy~Y~~lvPl~l~~~lk--~~~~~~~~~~s~~~liclYGYSl~i~IPvslL~ 196 (273)
..-+.+-..|..++|.+++.-++ |.. .+.+|-.+.||- .+.+-|..+++
T Consensus 19 ~~y~~l~~~YLlVvP~~l~~wm~~RWy~------~~~~Er~~~y~l-vF~FFPGllL~ 69 (81)
T PF10716_consen 19 LAYAALAGLYLLVVPLILYFWMNKRWYV------MSSFERLFMYFL-VFLFFPGLLLL 69 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH-HHHHHhHHHHH
Confidence 33456677899999988765554 443 478999999985 34556666554
No 20
>PF11285 DUF3086: Protein of unknown function (DUF3086); InterPro: IPR021437 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=20.41 E-value=38 Score=31.58 Aligned_cols=33 Identities=24% Similarity=0.583 Sum_probs=23.1
Q ss_pred cccccccCChHHHHHHhhhccccCCCCchhhhhcCCCCCcchhHHHH
Q psy16302 60 YFQRFFDVDTDTVISRIKGSVYPKFGDNYLQTYIQSKPDLYGPFWVC 106 (273)
Q Consensus 60 yYq~yFdVdT~~V~~Rl~~sl~P~~~~~f~~~~i~~~pDLYGPfWI~ 106 (273)
+-++=|.=|++.+.+++- .-+.+||.|||=|=.
T Consensus 104 ~~~~~F~~~~~~Ir~~l~--------------qyr~~PDyYg~PWqL 136 (283)
T PF11285_consen 104 FAAQTFQPDERQIRRLLD--------------QYRTQPDYYGPPWQL 136 (283)
T ss_pred chhhhcchHHHHHHHHHH--------------HHhhCCCccCChHHH
Confidence 446777777777766553 124689999999953
No 21
>PF11744 ALMT: Aluminium activated malate transporter; InterPro: IPR020966 This entry represents an malate transporter which has been is identified as being critical for aluminium tolerance in Arabidopsis thaliana [].; GO: 0010044 response to aluminum ion
Probab=20.14 E-value=2.4e+02 Score=27.94 Aligned_cols=73 Identities=18% Similarity=0.266 Sum_probs=40.4
Q ss_pred HhhchhhHHHHHHHHHhh---------HHHHHHHHHHHHHHHHHHHHHHHhcccccCCch--HHHHHHHHHHHHHHHHHH
Q psy16302 182 YGYSLSIYIPIAILWVIQ---------VGFLQVTLVLIGALLSGYILITSLLPAFRQPNI--LPLVVLGGLHFLLALGLM 250 (273)
Q Consensus 182 YGYSl~i~IPvslL~~ip---------~~~l~Wilv~~g~~~S~~fl~~~l~~~~~~k~~--l~~~~i~~lH~~l~l~~k 250 (273)
|+|...+++....+-.+. ....|-..+++|.+++. .+-..++|...+.+. .+...+-.++-.+.-.+.
T Consensus 120 ydYg~~Vf~LTf~lV~vs~yr~~~~~~~A~~R~~~I~iGv~i~l-~vsi~IfPvwAg~~Lh~~~a~~leklA~~le~~v~ 198 (406)
T PF11744_consen 120 YDYGGLVFILTFCLVAVSGYRTDEFLMLAVWRLLTIVIGVAICL-LVSIFIFPVWAGEDLHKLTAKNLEKLANSLEGCVE 198 (406)
T ss_pred hhHHHHHHHHHHHhheeecCCcchHHHHHHHHHHHHHHHHHHHH-HHHHheeechhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888887775544441 34567777777777765 444456677653111 222234444444444555
Q ss_pred HHhcc
Q psy16302 251 LYFFH 255 (273)
Q Consensus 251 l~FF~ 255 (273)
-||-.
T Consensus 199 ~y~~~ 203 (406)
T PF11744_consen 199 EYFKC 203 (406)
T ss_pred HHHhc
Confidence 55443
Done!