Query psy16302
Match_columns 273
No_of_seqs 132 out of 294
Neff 6.0
Searched_HMMs 29240
Date Fri Aug 16 17:54:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16302.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16302hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4grv_A Neurotensin receptor ty 42.2 1.3E+02 0.0043 28.0 9.7 32 93-124 23-56 (510)
2 1nrp_R Receptor based peptide 24.5 16 0.00056 20.7 0.1 11 94-104 9-19 (26)
3 1nro_R Receptor based peptide 23.0 19 0.00065 20.6 0.1 11 94-104 9-19 (27)
4 2xvc_A ESCRT-III, SSO0910; cel 11.5 55 0.0019 22.7 0.2 26 52-77 22-47 (59)
5 1wi9_A Protein C20ORF116 homol 10.5 1.1E+02 0.0038 22.0 1.5 26 54-79 20-45 (72)
6 2knc_A Integrin alpha-IIB; tra 10.5 4.1E+02 0.014 17.9 4.6 23 239-261 24-46 (54)
7 3ixz_A Potassium-transporting 9.4 9.9E+02 0.034 24.7 9.0 21 105-125 927-947 (1034)
8 3ech_C 25-MER fragment of prot 7.6 29 0.00099 19.6 -2.0 7 95-101 15-21 (25)
9 2l8s_A Integrin alpha-1; trans 7.4 5.7E+02 0.019 17.2 4.6 21 239-259 21-41 (54)
10 3arc_J Photosystem II reaction 6.9 2.9E+02 0.0098 17.6 2.2 14 102-115 9-22 (40)
No 1
>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}
Probab=42.24 E-value=1.3e+02 Score=27.96 Aligned_cols=32 Identities=16% Similarity=0.372 Sum_probs=22.5
Q ss_pred cCCCCCcchhHHHHH--HHHHHHHHHhhHHHHHh
Q psy16302 93 IQSKPDLYGPFWVCV--TLIITIAISGNIANYLQ 124 (273)
Q Consensus 93 i~~~pDLYGPfWI~~--TLIf~l~i~~nl~~~l~ 124 (273)
++.+.|+|.-+.+.+ .+|+++.+.||+-..+.
T Consensus 23 ~~~~~~~~~~v~~~~~~~~i~~~g~~gN~lvi~~ 56 (510)
T 4grv_A 23 LDVNTDIYSKVLVTAIYLALFVVGTVGNSVTLFT 56 (510)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcChhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 345679998887765 56777788888766543
No 2
>1nrp_R Receptor based peptide NR'S; serine proteinase/receptor; 3.00A {Homo sapiens} PDB: 1nrn_R 1nrq_R*
Probab=24.50 E-value=16 Score=20.74 Aligned_cols=11 Identities=45% Similarity=1.189 Sum_probs=8.6
Q ss_pred CCCCCcchhHH
Q psy16302 94 QSKPDLYGPFW 104 (273)
Q Consensus 94 ~~~pDLYGPfW 104 (273)
++.-|-|-|||
T Consensus 9 rnpndkyepfw 19 (26)
T 1nrp_R 9 RNPNDKYEPFW 19 (26)
T ss_pred cCCCcccCccc
Confidence 34459999999
No 3
>1nro_R Receptor based peptide NRP; serine proteinase/receptor; 3.10A {Homo sapiens}
Probab=23.00 E-value=19 Score=20.64 Aligned_cols=11 Identities=45% Similarity=1.189 Sum_probs=8.6
Q ss_pred CCCCCcchhHH
Q psy16302 94 QSKPDLYGPFW 104 (273)
Q Consensus 94 ~~~pDLYGPfW 104 (273)
++.-|-|-|||
T Consensus 9 rnpndkyepfw 19 (27)
T 1nro_R 9 RNPNDKYEPFW 19 (27)
T ss_pred cCCCcccCccc
Confidence 34459999999
No 4
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=11.52 E-value=55 Score=22.70 Aligned_cols=26 Identities=15% Similarity=0.383 Sum_probs=22.1
Q ss_pred CCcceeeecccccccCChHHHHHHhh
Q psy16302 52 KPSQWSFEYFQRFFDVDTDTVISRIK 77 (273)
Q Consensus 52 ~~~~~sl~yYq~yFdVdT~~V~~Rl~ 77 (273)
++++..+++....|+|+-++|++=++
T Consensus 22 sGGildI~~~a~kygV~kdeV~~~Lr 47 (59)
T 2xvc_A 22 NGGFLDIEHFSKVYGVEKQEVVKLLE 47 (59)
T ss_dssp TTSEEEHHHHHHHHCCCHHHHHHHHH
T ss_pred cCCEEeHHHHHHHhCCCHHHHHHHHH
Confidence 46899999999999999999976443
No 5
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=10.53 E-value=1.1e+02 Score=21.99 Aligned_cols=26 Identities=19% Similarity=0.162 Sum_probs=20.6
Q ss_pred cceeeecccccccCChHHHHHHhhhc
Q psy16302 54 SQWSFEYFQRFFDVDTDTVISRIKGS 79 (273)
Q Consensus 54 ~~~sl~yYq~yFdVdT~~V~~Rl~~s 79 (273)
+.-.++=...=|++.|+++.+||..=
T Consensus 20 Kvv~LedLA~~F~l~t~~~i~RI~~L 45 (72)
T 1wi9_A 20 KVVLLEDLAFQMGLRTQDAINRIQDL 45 (72)
T ss_dssp SEECHHHHHHHHCSCHHHHHHHHHHH
T ss_pred CeeeHHHHHHHhCCChHHHHHHHHHH
Confidence 44566667778999999999999753
No 6
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=10.50 E-value=4.1e+02 Score=17.85 Aligned_cols=23 Identities=22% Similarity=0.131 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHhccccCCCC
Q psy16302 239 GGLHFLLALGLMLYFFHITRRNV 261 (273)
Q Consensus 239 ~~lH~~l~l~~kl~FF~~~~~~~ 261 (273)
..+-++..+..|.-||+...++.
T Consensus 24 llL~li~~~LwK~GFFkR~~~~~ 46 (54)
T 2knc_A 24 LLLTILVLAMWKVGFFKRNRPPL 46 (54)
T ss_dssp HHHHHHHHHHHHHHHTTTTCCSC
T ss_pred HHHHHHHHHHHHcCcccCCCCCc
Confidence 33444556777899998766443
No 7
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A
Probab=9.39 E-value=9.9e+02 Score=24.70 Aligned_cols=21 Identities=24% Similarity=0.273 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHhhHHHHHhh
Q psy16302 105 VCVTLIITIAISGNIANYLQA 125 (273)
Q Consensus 105 I~~TLIf~l~i~~nl~~~l~~ 125 (273)
.+.|+.|+..+...+.+.+.-
T Consensus 927 ~~~t~~f~~lv~~q~~~~~~~ 947 (1034)
T 3ixz_A 927 TCYTVFFISIEMCQIADVLIR 947 (1034)
T ss_pred hHHHHHHHHHHHHHHHHHHhh
Confidence 477888888877777776654
No 8
>3ech_C 25-MER fragment of protein ARMR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa}
Probab=7.61 E-value=29 Score=19.60 Aligned_cols=7 Identities=57% Similarity=0.885 Sum_probs=5.3
Q ss_pred CCCCcch
Q psy16302 95 SKPDLYG 101 (273)
Q Consensus 95 ~~pDLYG 101 (273)
+-|||||
T Consensus 15 nawdly~ 21 (25)
T 3ech_C 15 NAWDLYG 21 (26)
T ss_dssp THHHHHH
T ss_pred hHHHHHH
Confidence 4489998
No 9
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=7.37 E-value=5.7e+02 Score=17.17 Aligned_cols=21 Identities=19% Similarity=0.088 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHhccccCC
Q psy16302 239 GGLHFLLALGLMLYFFHITRR 259 (273)
Q Consensus 239 ~~lH~~l~l~~kl~FF~~~~~ 259 (273)
..+=++..+..|.-||+...+
T Consensus 21 LLL~Lii~~LwK~GFFKR~~~ 41 (54)
T 2l8s_A 21 LLLMLLILALWKIGFFKRPLK 41 (54)
T ss_dssp HHHHHHHHHHHHHHHTTSCCS
T ss_pred HHHHHHHHHHHHcCcccCCCc
Confidence 333445567778999987654
No 10
>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*
Probab=6.94 E-value=2.9e+02 Score=17.56 Aligned_cols=14 Identities=29% Similarity=0.596 Sum_probs=10.1
Q ss_pred hHHHHHHHHHHHHH
Q psy16302 102 PFWVCVTLIITIAI 115 (273)
Q Consensus 102 PfWI~~TLIf~l~i 115 (273)
|+|+..|+.=+..+
T Consensus 9 PLWlvgtv~G~~vi 22 (40)
T 3arc_J 9 PLWIVATVAGMGVI 22 (40)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred cEEeeeeehhhhhh
Confidence 89999988654443
Done!