Query psy16302
Match_columns 273
No_of_seqs 132 out of 294
Neff 6.0
Searched_HMMs 13730
Date Fri Aug 16 17:54:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16302.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/16302hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1s7ea2 a.35.1.7 (A:6-85) Hepa 11.3 39 0.0028 23.0 1.1 18 66-83 1-18 (80)
2 d1wi9a_ a.4.5.47 (A:) Hypothet 10.1 55 0.004 21.9 1.5 26 54-79 20-45 (72)
3 d1x2la1 a.35.1.7 (A:9-95) Home 9.1 59 0.0043 22.4 1.4 17 66-82 8-24 (87)
4 d1zuua1 b.34.2.1 (A:2-57) BZZ1 8.2 59 0.0043 19.6 1.1 19 5-23 4-22 (56)
5 d2axtj1 f.23.32.1 (J:7-40) Pho 8.2 1.1E+02 0.0082 17.2 2.2 11 102-112 3-13 (34)
6 d1wh8a_ a.35.1.7 (A:) Homeobox 7.1 81 0.0059 22.7 1.4 17 66-82 26-42 (111)
7 d1efna_ b.34.2.1 (A:) Fyn prot 6.6 76 0.0055 19.1 1.0 17 5-21 5-21 (57)
8 d1wh6a_ a.35.1.7 (A:) Homeobox 6.4 92 0.0067 22.0 1.4 20 64-83 14-33 (101)
9 d1oota_ b.34.2.1 (A:) Hypothet 6.4 79 0.0057 19.4 1.0 17 5-21 6-22 (58)
10 d1ppjd2 f.23.11.1 (D:196-241) 6.3 2E+02 0.014 17.1 2.8 29 203-231 11-39 (46)
No 1
>d1s7ea2 a.35.1.7 (A:6-85) Hepatocyte nuclear factor 6 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=11.35 E-value=39 Score=23.05 Aligned_cols=18 Identities=22% Similarity=0.340 Sum_probs=15.4
Q ss_pred cCChHHHHHHhhhccccC
Q psy16302 66 DVDTDTVISRIKGSVYPK 83 (273)
Q Consensus 66 dVdT~~V~~Rl~~sl~P~ 83 (273)
++||.+|.+||+..|.-.
T Consensus 1 eldT~~I~~~i~~eL~~~ 18 (80)
T d1s7ea2 1 EINTKEVAQRITTELKRY 18 (80)
T ss_dssp CCCSHHHHHHHHHHHTSS
T ss_pred CCCHHHHHHHHHHHHHHc
Confidence 589999999999998643
No 2
>d1wi9a_ a.4.5.47 (A:) Hypothetical protein C20orf116 homolog {Mouse (Mus musculus) [TaxId: 10090]}
Probab=10.12 E-value=55 Score=21.88 Aligned_cols=26 Identities=19% Similarity=0.162 Sum_probs=20.9
Q ss_pred cceeeecccccccCChHHHHHHhhhc
Q psy16302 54 SQWSFEYFQRFFDVDTDTVISRIKGS 79 (273)
Q Consensus 54 ~~~sl~yYq~yFdVdT~~V~~Rl~~s 79 (273)
+.-.+|=...-|++.|+++.+||..=
T Consensus 20 Kvv~LedLAa~F~lktqd~i~RIq~L 45 (72)
T d1wi9a_ 20 KVVLLEDLAFQMGLRTQDAINRIQDL 45 (72)
T ss_dssp SEECHHHHHHHHCSCHHHHHHHHHHH
T ss_pred CEeeHHHHHHHcCCcHHHHHHHHHHH
Confidence 44566777788999999999999753
No 3
>d1x2la1 a.35.1.7 (A:9-95) Homeobox protein Cux-2, CUTL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.08 E-value=59 Score=22.40 Aligned_cols=17 Identities=18% Similarity=0.343 Sum_probs=15.0
Q ss_pred cCChHHHHHHhhhcccc
Q psy16302 66 DVDTDTVISRIKGSVYP 82 (273)
Q Consensus 66 dVdT~~V~~Rl~~sl~P 82 (273)
++||.||.+||+..|.-
T Consensus 8 ~ldT~~i~~~v~~~L~~ 24 (87)
T d1x2la1 8 QLDTAEIAFQVKEQLLK 24 (87)
T ss_dssp CCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 68999999999998864
No 4
>d1zuua1 b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=8.25 E-value=59 Score=19.64 Aligned_cols=19 Identities=11% Similarity=0.256 Sum_probs=14.7
Q ss_pred ceeeccccccCCCCCCCCC
Q psy16302 5 ILVDFEETNASEFDFKSYP 23 (273)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~ 23 (273)
.|.||+..+.++|+|+.=.
T Consensus 4 alydf~a~~~~ELs~~~Gd 22 (56)
T d1zuua1 4 VLYAYVQKDDDEITITPGD 22 (56)
T ss_dssp ECSCBCCCSTTBCCBCTTC
T ss_pred EeeeeCCCCCCEeeECCCC
Confidence 4778888889999877544
No 5
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=8.22 E-value=1.1e+02 Score=17.20 Aligned_cols=11 Identities=27% Similarity=0.770 Sum_probs=8.1
Q ss_pred hHHHHHHHHHH
Q psy16302 102 PFWVCVTLIIT 112 (273)
Q Consensus 102 PfWI~~TLIf~ 112 (273)
|+|+..|+.=+
T Consensus 3 PLWlv~tv~G~ 13 (34)
T d2axtj1 3 PLWIVATVAGM 13 (34)
T ss_dssp CHHHHHHHHHH
T ss_pred cEEEeeehhhh
Confidence 88998887433
No 6
>d1wh8a_ a.35.1.7 (A:) Homeobox protein Cux-2, CUTL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.08 E-value=81 Score=22.68 Aligned_cols=17 Identities=24% Similarity=0.421 Sum_probs=15.0
Q ss_pred cCChHHHHHHhhhcccc
Q psy16302 66 DVDTDTVISRIKGSVYP 82 (273)
Q Consensus 66 dVdT~~V~~Rl~~sl~P 82 (273)
++||.+|.+||+.-|.-
T Consensus 26 eLDT~~Ia~~v~~~L~~ 42 (111)
T d1wh8a_ 26 ELDTYSITKRVKEVLTD 42 (111)
T ss_dssp CCCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHH
Confidence 59999999999998864
No 7
>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.62 E-value=76 Score=19.11 Aligned_cols=17 Identities=24% Similarity=0.565 Sum_probs=12.3
Q ss_pred ceeeccccccCCCCCCC
Q psy16302 5 ILVDFEETNASEFDFKS 21 (273)
Q Consensus 5 ~~~~~~~~~~~~~~~~~ 21 (273)
.|.|++-.+.++|+|+.
T Consensus 5 Al~dy~a~~~~eLs~~~ 21 (57)
T d1efna_ 5 ALYDYEAITEDDLSFHK 21 (57)
T ss_dssp ESSCBCCSSTTBCCBCT
T ss_pred ECCCCCCCCcCCcCCCC
Confidence 35677777888888764
No 8
>d1wh6a_ a.35.1.7 (A:) Homeobox protein Cux-2, CUTL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.45 E-value=92 Score=21.98 Aligned_cols=20 Identities=20% Similarity=0.318 Sum_probs=16.5
Q ss_pred cccCChHHHHHHhhhccccC
Q psy16302 64 FFDVDTDTVISRIKGSVYPK 83 (273)
Q Consensus 64 yFdVdT~~V~~Rl~~sl~P~ 83 (273)
|=++||.+|.+||+.-|.-.
T Consensus 14 ~~~ldT~~I~~~v~~eL~~~ 33 (101)
T d1wh6a_ 14 YREVDTLELTRQVKEKLAKN 33 (101)
T ss_dssp HSCCCHHHHHHHHHHHHHTT
T ss_pred ccccCHHHHHHHHHHHHHHc
Confidence 44799999999999988643
No 9
>d1oota_ b.34.2.1 (A:) Hypothetical protein YFR024c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.44 E-value=79 Score=19.36 Aligned_cols=17 Identities=18% Similarity=0.489 Sum_probs=12.2
Q ss_pred ceeeccccccCCCCCCC
Q psy16302 5 ILVDFEETNASEFDFKS 21 (273)
Q Consensus 5 ~~~~~~~~~~~~~~~~~ 21 (273)
-|.|++..+.++|+|+.
T Consensus 6 Alydy~a~~~~ELs~~~ 22 (58)
T d1oota_ 6 ALYSFAGEESGDLPFRK 22 (58)
T ss_dssp ESSCBCCCSTTBCCBCT
T ss_pred EccCCCCCCCCCccCCC
Confidence 35677777888888664
No 10
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.25 E-value=2e+02 Score=17.13 Aligned_cols=29 Identities=14% Similarity=0.119 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccccCCc
Q psy16302 203 LQVTLVLIGALLSGYILITSLLPAFRQPN 231 (273)
Q Consensus 203 l~Wilv~~g~~~S~~fl~~~l~~~~~~k~ 231 (273)
+++++++.-+..-+++.-+..|..++.||
T Consensus 11 ~Kv~~~l~~l~~l~yy~KR~~Ws~lKsrK 39 (46)
T d1ppjd2 11 LKMLLMMGLLLPLVYAMKRHKWSVLKSRK 39 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCE
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccce
Confidence 44555555555555566666676666544
Done!