RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16302
(273 letters)
>gnl|CDD|218316 pfam04893, Yip1, Yip1 domain. The Yip1 integral membrane domain
contains four transmembrane alpha helices. The domain is
characterized by the motifs DLYGP and GY. The Yip1
protein is a golgi protein involved in vesicular
transport that interacts with GTPases.
Length = 171
Score = 42.8 bits (101), Expect = 4e-05
Identities = 37/188 (19%), Positives = 65/188 (34%), Gaps = 22/188 (11%)
Query: 65 FDVDTDTVISRIKGSVYPKFGDNYLQTYIQSKPDLYGPFWVCVTLIITIAISGNIANYLQ 124
D RI+ P+ P L +TL++ + ++ + L
Sbjct: 1 VLTDPSEAFRRIREEPPPRA------------PWLPLLLLALLTLLLGLLLALLLGWLLG 48
Query: 125 AAATHKYHWKYDFHAISTSATAIFSY-AWLLPVLVWGYLKYQNDSEV-VNLSILELLCVY 182
+ S + I Y LL + + L + + S + L +
Sbjct: 49 SG-----ETIQGLTGGSALGSIIGGYLGLLLGLFLLALLLHLIAKLFGGDGSFKQTLSLV 103
Query: 183 GYSLSIYI---PIAILWVIQVGFLQVTLVLIGALLSGYILITSLLPAFRQPNILPLVVLG 239
GY+L I IA+L + +G L + + L+ + S Y+L L A L+V
Sbjct: 104 GYALLPLILGGLIALLLSLLLGALLLLVGLLALIWSLYLLYLGLKAAHGLSKKKALLVAL 163
Query: 240 GLHFLLAL 247
L LL +
Sbjct: 164 LLLLLLIV 171
>gnl|CDD|215668 pfam00033, Cytochrom_B_N, Cytochrome b(N-terminal)/b6/petB.
Length = 181
Score = 38.2 bits (89), Expect = 0.002
Identities = 33/155 (21%), Positives = 55/155 (35%), Gaps = 8/155 (5%)
Query: 104 WVCVTLIITIAISGNIANYLQAAATHKYHWK-YDFHAISTSATAIFSYAWLLPVLVWGYL 162
W+ L++ + ++G + A H LL W L
Sbjct: 13 WLLALLVLLLLLTGLFLAFPGIALDVGGGGLARSLHKSLGLLFLALLLLRLL----WR-L 67
Query: 163 KYQNDSEVVNLSILELLCVYGYSLSIYIPIAILWVIQVGFLQVTLVLIGALLSGYILITS 222
+ + + L S Y P+A L + + L + L L G LL+ +
Sbjct: 68 RGGKFARFLKFYYLFPPPPPPPSGK-YNPLAKLVHLLLYLLLILLPLTGLLLAWGDGLVL 126
Query: 223 LLPAFRQPNILPLVVLGGLHFLLALGLMLYFF-HI 256
+LP + + L + LHFLLA L+ + HI
Sbjct: 127 ILPGWLLVDSGLLELFRLLHFLLAWLLLAFVVLHI 161
>gnl|CDD|216772 pfam01899, MNHE, Na+/H+ ion antiporter subunit. Subunit of a
Na+/H+ Prokaryotic antiporter complex.
Length = 157
Score = 34.8 bits (81), Expect = 0.018
Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 192 IAILWVIQVGFLQVTLVLIGALLSGYILITSLLPAFRQPNILPLVVLGGLHFLLALGLML 251
+ ++W++ G +L+G LL+ +L+ L +P P + L L L+L
Sbjct: 5 LFVVWLLLTGSFSPGNLLLGLLLA--LLVLLLTLPLVRPFGRPPPLPRVRRPLALLRLLL 62
Query: 252 YFFH-ITRRNVQ 262
YF + + N+
Sbjct: 63 YFLWDLVKANID 74
>gnl|CDD|225451 COG2898, COG2898, Uncharacterized conserved protein [Function
unknown].
Length = 538
Score = 31.9 bits (73), Expect = 0.32
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
Query: 190 IPIAILWVIQVGFLQVTLVLIGALLSGYILITS-LLPAFR-----QPNILPLVVLGGLHF 243
+ AI W++++ L ++ I LSG IL+ S P+ P I+PL ++ H
Sbjct: 1 LAPAIDWLVRL--LVPQILAILVFLSGVILLFSGATPSLDERLRLLPRIVPLPLIEASHL 58
Query: 244 LLALGLMLYFF 254
+L L
Sbjct: 59 TASLLGALLLL 69
>gnl|CDD|224905 COG1994, SpoIVFB, Zn-dependent proteases [General function
prediction only].
Length = 230
Score = 31.2 bits (71), Expect = 0.41
Identities = 22/128 (17%), Positives = 47/128 (36%), Gaps = 13/128 (10%)
Query: 133 WKYDFHAISTSATAIFSYAWL--LPVLVWGYLKYQNDSEVVNLS-------ILELLCVYG 183
+ + + +L +PV G + +V+L+ L +L +
Sbjct: 67 GRLGLKLLLALLFGFGGFGFLKPVPVNPRGEFLIRLAGPLVSLALGPLTNIALAVLGLLA 126
Query: 184 YSLSIYIPIAILWVIQVGFLQVTLVLIGAL----LSGYILITSLLPAFRQPNILPLVVLG 239
SL +Y + ++ + + + L L L L G ++ +LLP I + +
Sbjct: 127 LSLFLYHSVLFAFLAALALVNLVLALFNLLPIPPLDGGRVLRALLPRRYGAAIAAIELAA 186
Query: 240 GLHFLLAL 247
L L+ +
Sbjct: 187 LLGLLVLI 194
>gnl|CDD|236697 PRK10459, PRK10459, colanic acid exporter; Provisional.
Length = 492
Score = 31.5 bits (72), Expect = 0.48
Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 23/92 (25%)
Query: 175 ILELLCVYGYSLSIYIPI------------AILWVIQVGFLQVTLVLIGALLSGYILITS 222
IL+LLC+ G S+ PI + W + FL + ++IG L+G I +
Sbjct: 326 ILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWNVFKTFLFIPAIVIGGQLAGLIGVA- 384
Query: 223 LLPAFRQPNILPLVVLGGLHFLLALGLMLYFF 254
L +++ ++ +L+ LM+
Sbjct: 385 ----------LGFLLVQIINTILSYFLMIKPV 406
>gnl|CDD|219089 pfam06570, DUF1129, Protein of unknown function (DUF1129). This
family consists of several hypothetical bacterial
proteins of unknown function.
Length = 206
Score = 30.7 bits (70), Expect = 0.63
Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 11/66 (16%)
Query: 199 QVGFLQVTLVLIGALLS--GYILITSLLPAFRQPNILPLV--VLGGLHFLLALGLMLYF- 253
+ + + L+L+ A++ +TS+LP P + P V ++G +A G+ Y
Sbjct: 143 RPPWWKSLLILVLAVVVWMAVFTLTSMLPPVINPVLPPWVYIIIGA----IAFGVRYYLK 198
Query: 254 --FHIT 257
++I
Sbjct: 199 KKYNIQ 204
>gnl|CDD|224203 COG1284, COG1284, Uncharacterized conserved protein [Function
unknown].
Length = 289
Score = 30.6 bits (70), Expect = 0.68
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 190 IPIAILWVIQVG--FLQVTLVLIGALLSGYILITSLLPAFRQPNILPLVVLGGLHFLLAL 247
IP+ IL ++G F ++ ++ LLS ++ + LP + L + GGL LL +
Sbjct: 69 IPLFILGYKKIGKRFTLLSTIIGVLLLSLFLWLFQRLPVLTIIDPLLAALFGGL--LLGI 126
Query: 248 GLMLYFFH 255
GL L F H
Sbjct: 127 GLGLVFRH 134
>gnl|CDD|135660 PRK05927, PRK05927, hypothetical protein; Provisional.
Length = 350
Score = 30.2 bits (68), Expect = 1.2
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 10/69 (14%)
Query: 57 SFEYF----QRFFDVDTDTVISRIKGSVYPKFGDNYLQTYI----QSKPDLYGPFWVCVT 108
SF+ F QR+ TV+ ++G V+P+ G +YL+ + + P L+ F+ V
Sbjct: 77 SFDEFRSLMQRYVSAGVKTVL--LQGGVHPQLGIDYLEELVRITVKEFPSLHPHFFSAVE 134
Query: 109 LIITIAISG 117
+ +SG
Sbjct: 135 IAHAAQVSG 143
>gnl|CDD|181598 PRK08965, PRK08965, putative monovalent cation/H+ antiporter
subunit E; Reviewed.
Length = 162
Score = 29.4 bits (67), Expect = 1.2
Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 9/76 (11%)
Query: 192 IAILWVIQVGFLQVTLVLIGALLSGYILITSLLPAFRQPNILPLVVLGGLHFLLALGLML 251
+A++W++ G + +L+G LL +LI LL L L L+L
Sbjct: 15 LALVWLLLNGSFSLGNLLLGLLLG--LLIPLLLALLVPLEGRL------RRPLALLRLLL 66
Query: 252 YFFH-ITRRNVQTTSI 266
+ + N+Q +
Sbjct: 67 VVLYDLVVSNIQVAWL 82
>gnl|CDD|238888 cd01907, GlxB, Glutamine amidotransferases class-II
(Gn-AT)_GlxB-type. GlxB is a glutamine
amidotransferase-like protein of unknown function found
in bacteria and archaea. GlxB has a structural fold
similar to that of other class II glutamine
amidotransferases including glucosamine-fructose
6-phosphate synthase (GLMS or GFAT), glutamine
phosphoribosylpyrophosphate (Prpp) amidotransferase
(GPATase), asparagine synthetase B (AsnB), beta lactam
synthetase (beta-LS) and glutamate synthase (GltS).
The GlxB fold is also somewhat similar to the Ntn
(N-terminal nucleophile) hydrolase fold of the
proteasomal alpha and beta subunits.
Length = 249
Score = 29.5 bits (67), Expect = 1.7
Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Query: 160 GYLKYQNDSEVVNLSILELLCVYGYSLSIYIPIAILWVIQVGF-LQVTLVLIGALLSG 216
+ + D+EV+ + LL G L Y I + + L + L A L G
Sbjct: 128 YKFETETDTEVIAYYLDLLLRKGGLPLEYYKHIIRMPEEERELLLALRLTYRLADLDG 185
>gnl|CDD|218345 pfam04952, AstE_AspA, Succinylglutamate desuccinylase /
Aspartoacylase family. This family includes
Succinylglutamate desuccinylase EC:3.1.-.- that
catalyzes the fifth and last step in arginine catabolism
by the arginine succinyltransferase pathway. The family
also include aspartoacylase EC:3.5.1.15 which cleaves
acylaspartate into a fatty acid and aspartate. Mutations
in human ASPA lead to Canavan disease disease. This
family is probably structurally related to pfam00246
(Bateman A pers. obs.).
Length = 289
Score = 29.3 bits (66), Expect = 1.9
Identities = 8/34 (23%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
Query: 119 IANYLQAAATHKYHWKYDFH-AISTSATAIFSYA 151
IA+ A + D H S +F+ A
Sbjct: 87 IADAFFRALLPRADIVLDLHTGTRGSDHLLFAEA 120
>gnl|CDD|236879 PRK11195, PRK11195, lysophospholipid transporter LplT; Provisional.
Length = 393
Score = 28.6 bits (65), Expect = 3.1
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
Query: 165 QNDSEVVNLSILELLCVYGYSLSIYIPIAILWVIQVGFLQVTLVLIGAL 213
QN +E NL++L +L + YSL + + + ++ VI VGF + + + L
Sbjct: 335 QNFNE--NLAMLLMLGL--YSLLVKLGVPVVAVI-VGFGLLVALAMALL 378
>gnl|CDD|220475 pfam09930, DUF2162, Predicted transporter (DUF2162). Members of
this family of bacterial proteins are thought to be
membrane transporters, but their exact function has not,
as yet, been elucidated.
Length = 228
Score = 28.4 bits (64), Expect = 3.4
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Query: 201 GFLQVTLVLIGALLSGY----ILITSLLPAFRQPNILPLVVLG-GLHFLLALGLMLYFFH 255
GF ++ I + GY +LI +L F + + G +H L+ALGL+
Sbjct: 25 GFSGLSRKEIALIAGGYGLLALLIGALASRFSMKILEAIYRYGVVIHVLMALGLIGAGIF 84
Query: 256 ITRR 259
++
Sbjct: 85 TIKK 88
>gnl|CDD|183067 PRK11272, PRK11272, putative DMT superfamily transporter inner
membrane protein; Provisional.
Length = 292
Score = 28.4 bits (64), Expect = 3.5
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 205 VTLVLIGALLSGYILITSLLPAFRQP-NILPLVVLGGLHFLLALGLMLYF 253
L L GAL + YI+ S R P +++ G+ FL+A L+L F
Sbjct: 5 QLLPLFGALFALYIIWGSTYLVIRIGVESWPPLMMAGVRFLIAGILLLAF 54
>gnl|CDD|115915 pfam07290, DUF1449, Protein of unknown function (DUF1449). This
family consists of several bacterial proteins of around
210 residues in length. The function of this family is
unknown.
Length = 202
Score = 27.5 bits (61), Expect = 5.8
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 192 IAILWVIQVGFLQVTLVLIGALLSGYILITSL-----LPAFRQPNILPLVVLGGLHFLLA 246
AI +V+ +G L+V +++G LSG L L L + +G + L+
Sbjct: 10 FAIAFVVIIGSLEVVTLIVGHSLSG-ALDAHLDHYDHPSDGGVLQALHYLNIGRVPALVV 68
Query: 247 LGLMLYFFHIT 257
L L+ F +T
Sbjct: 69 LCLLAGAFGLT 79
>gnl|CDD|224877 COG1966, CstA, Carbon starvation protein, predicted membrane
protein [Signal transduction mechanisms].
Length = 575
Score = 28.1 bits (63), Expect = 6.2
Identities = 31/139 (22%), Positives = 59/139 (42%), Gaps = 11/139 (7%)
Query: 138 HAISTSATAIFSYAWLLPVLVW-GYLKYQNDSEVVNLSILELLCVYGYSLSIYIPIAILW 196
++ S +F+ +P+ V G Y+ + S++ L + L+IY+ +
Sbjct: 153 KLLANSPWGVFTVFLTIPLAVLMGIYLYRLRGNMGISSVIGLALLI---LAIYLGSVVPI 209
Query: 197 VIQVGFLQVTLVLIGALLSGYILITSLLPAFR--QPNILPL---VVLGGLHFLLALGLML 251
+ + +++ +L Y I S+LP + QP L +++GGL LA+GL++
Sbjct: 210 DAPIFTGSLVILVWIIILFIYAFIASVLPVWLLLQP-RDYLNGFLLIGGL-VGLAIGLVI 267
Query: 252 YFFHITRRNVQTTSIDNSP 270
I V T D
Sbjct: 268 SNPKIQAPAVNTKFPDGGG 286
>gnl|CDD|219167 pfam06770, Arif-1, Actin-rearrangement-inducing factor (Arif-1).
This family consists of several Nucleopolyhedrovirus
actin-rearrangement-inducing factor (Arif-1) proteins.
In response to Autographa californica multicapsid
nuclear polyhedrosis virus (AcMNPV) infection, a
sequential rearrangement of the actin cytoskeleton
occurs this is induced by Arif-1. Arif-1 is tyrosine
phosphorylated and is located at the plasma membrane as
a component of the actin rearrangement-inducing complex.
Length = 201
Score = 27.3 bits (61), Expect = 7.1
Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Query: 162 LKYQNDSEVVNLSILELLCVYGYSLSIYIPIAILWVIQVGFLQVTLVLIGALLSGYILIT 221
L Y+N + V N S L+ VYG L + + + + I L++ ++
Sbjct: 34 LDYENGTSVFNCSG--LVLVYGPLLLLVTTGGLYKITSKMRSNFYMKTIIPLVTLLAMLC 91
Query: 222 SLLPAFRQPNI 232
+L QP I
Sbjct: 92 WMLFVSFQPWI 102
>gnl|CDD|222328 pfam13703, PepSY_TM_2, PepSY-associated TM helix. This family
represents a conserved TM helix found in bacteria and
archaea.
Length = 87
Score = 26.0 bits (58), Expect = 7.2
Identities = 17/68 (25%), Positives = 23/68 (33%), Gaps = 5/68 (7%)
Query: 193 AILWVIQVGFLQVTLVLIGALLSGYIL---ITSLLPAFRQPNILPLVVLGGLHFLLALGL 249
VG L+L+ L+SG IL I FR LH LL +
Sbjct: 13 DPWGRWLVGL--AALLLLVLLVSGLILHKRIFRDFFTFRPGKGSGQRSWLDLHNLLGVWA 70
Query: 250 MLYFFHIT 257
+ + I
Sbjct: 71 LPFLLLIA 78
>gnl|CDD|227524 COG5197, COG5197, Predicted membrane protein [Function unknown].
Length = 284
Score = 27.2 bits (60), Expect = 9.1
Identities = 46/223 (20%), Positives = 75/223 (33%), Gaps = 36/223 (16%)
Query: 21 SYPSQLEQNPLGDSPVRNSQKQDAFPGDDSSKPSQ----------WSFEYFQRFFDVDTD 70
+P Q + + F G D+ Q S + +F V
Sbjct: 35 GFPFQDPRGSMAFQL--GQSAMSNFIGKDAFNQFQEYVNKATGNAASSQQISTYFQVSNR 92
Query: 71 TVISRIKGSVYP-------KFGD--NYLQTYIQ-SKPDLYGPFWVCVTLIITIAISGNIA 120
VI+++K ++P + GD +L + PD+Y P VT I+ +
Sbjct: 93 YVINKLKLILFPFLNKNWQRIGDSEGFLPPRDDVNSPDMYMPIMGFVTYILLWNTQQGLK 152
Query: 121 NYLQAAATHKYHWKYDFHAISTSATAIFSYAWLLPVLVWGYLKYQNDSEVVNLSILELLC 180
D +S A L+ L YL DS++ S L+LL
Sbjct: 153 GSFNPE---------DLGYKLSSTLAFVCVDLLITRLG-LYL--LIDSKIP--SFLDLLA 198
Query: 181 VYGYSLSIYIPIAILWVIQVGFLQVTLVLIGALLSGYILITSL 223
GY I +L + + F+ L+ + G L+ SL
Sbjct: 199 YSGYKFVPLILAQLLKNVTMPFVLNILIFYLYIAFGVFLLRSL 241
>gnl|CDD|227086 COG4743, COG4743, Predicted membrane protein [Function unknown].
Length = 316
Score = 27.2 bits (60), Expect = 9.8
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 9/77 (11%)
Query: 186 LSIYIPIAILWVIQVGFLQVTLVLIGALLSGYILITSLLPAFRQPNILPLVVLG-GLHF- 243
+ I+ P AI +I+ L + VL L GY+L T+L P ++ + L + L GL
Sbjct: 46 IIIFTPAAINSIIR-KILGLLFVL---FLPGYVLTTALFPERKELDNLERLALSFGLSIA 101
Query: 244 ---LLALGLMLYFFHIT 257
L+ L + + I
Sbjct: 102 IVPLIGLLMNYTDWGIR 118
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.139 0.428
Gapped
Lambda K H
0.267 0.0759 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,954,790
Number of extensions: 1332921
Number of successful extensions: 1726
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1702
Number of HSP's successfully gapped: 136
Length of query: 273
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 178
Effective length of database: 6,723,972
Effective search space: 1196867016
Effective search space used: 1196867016
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.1 bits)