RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy16302
         (273 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 34.4 bits (78), Expect = 0.035
 Identities = 34/187 (18%), Positives = 61/187 (32%), Gaps = 51/187 (27%)

Query: 48  DDSSKPSQWSFEYFQ---------RFFDVDTDTV---------ISRIKGSVYPKFGDNYL 89
            +       ++  F          RF  V TD +         +     ++ P    + L
Sbjct: 251 LNVQNA--KAWNAFNLSCKILLTTRFKQV-TDFLSAATTTHISLDHHSMTLTPDEVKSLL 307

Query: 90  QTYIQSKP-DLYGPFWVCVTLIITIAISGNIANYLQAAATHKYHWKYDF-----HAISTS 143
             Y+  +P DL  P  V  T    ++I   IA  ++       +WK+         I +S
Sbjct: 308 LKYLDCRPQDL--PREVLTTNPRRLSI---IAESIRDGLATWDNWKHVNCDKLTTIIESS 362

Query: 144 --------------ATAIFSYAWLLP--VL--VWGYLKYQNDSEVVN-LSILELLCVYGY 184
                           ++F  +  +P  +L  +W  +   +   VVN L    L+     
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422

Query: 185 SLSIYIP 191
             +I IP
Sbjct: 423 ESTISIP 429



 Score = 30.6 bits (68), Expect = 0.58
 Identities = 61/374 (16%), Positives = 105/374 (28%), Gaps = 131/374 (35%)

Query: 4   DILVDFEETNASEFDFKSYP-------SQLEQNPLGDSP------------VRNSQKQ-- 42
           DIL  FE+     FD K          S+ E + +  S             + + Q++  
Sbjct: 20  DILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV 79

Query: 43  DAFPGDDSSK-----PSQWSFEYFQRFFDVDTDTVISRIK-----GSVYPKFGDNYLQTY 92
             F  +          S    E  Q    + T   I +         V+ K+  + LQ Y
Sbjct: 80  QKFVEEVLRINYKFLMSPIKTEQRQP--SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPY 137

Query: 93  I-------QSKPD----LYGP--------------------------FWV----CVT--- 108
           +       + +P     + G                           FW+    C +   
Sbjct: 138 LKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPET 197

Query: 109 -LIITIAISGNIANYLQAAATHKYHWKYDFHAISTSATAIFS---YAWLLPVL--VWGYL 162
            L +   +   I     + + H  + K   H+I      +     Y   L VL  V    
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ--- 254

Query: 163 KYQNDSEVVNLSILELLCVYGYSLSIYIPIAILWVIQVGFLQVTLVLIGALLSGYILITS 222
               +++  N     L C             IL  +   F QVT  L  A  + +I +  
Sbjct: 255 ----NAKAWNA--FNLSC------------KIL--LTTRFKQVTDFLSAATTT-HISLDH 293

Query: 223 LLPAFRQPNI--------------LPLVVLGGLHFLLAL-GLML--------YFFHITRR 259
                    +              LP  VL      L++    +         + H+   
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD 353

Query: 260 NVQTTSIDNSPSTL 273
            + T  I++S + L
Sbjct: 354 KLTTI-IESSLNVL 366


>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane
           protein, P-type ATPase, active transport, cryo-electron
           microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
          Length = 920

 Score = 28.8 bits (65), Expect = 2.2
 Identities = 6/30 (20%), Positives = 17/30 (56%)

Query: 169 EVVNLSILELLCVYGYSLSIYIPIAILWVI 198
           E  + SI+ ++ ++ +S  I+  +  ++ I
Sbjct: 848 EHSDTSIVAVVRIWIFSFGIFCIMGGVYYI 877


>1fzc_B Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG
           MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB:
           1fzb_B* 1fza_B* 1fze_B* 1fzf_B* 1fzg_B* 1n86_B* 1n8e_B
           2h43_B* 2hlo_B* 2hod_B* 2hpc_B* 2q9i_B* 2xnx_B 2xny_B
           3e1i_B* 2z4e_B* 2oyh_B* 1ltj_B* 1rf0_B* 1lt9_B* ...
          Length = 328

 Score = 27.2 bits (60), Expect = 6.2
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 14/58 (24%)

Query: 61  FQRFFDVDTD----TVI-SRIKGSV--------YPK-FGDNYLQTYIQSKPDLYGPFW 104
           ++ + D++T+    TVI +R  GSV        Y + FG+    T  ++   L G +W
Sbjct: 103 YRVYCDMNTENGGWTVIQNRQDGSVDFGRKWDPYKQGFGNVATNTDGKNYCGLPGEYW 160


>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics,
           PSI-biology, membrane protein, GPCR NET GPCR, hydrolase;
           HET: 5EH D7V OLC; 3.10A {Homo sapiens}
          Length = 452

 Score = 27.0 bits (59), Expect = 7.8
 Identities = 9/57 (15%), Positives = 22/57 (38%), Gaps = 5/57 (8%)

Query: 147 IFSYAWLLPVLVWGYLKYQNDSEVVNLSILELLCVYGYSL-----SIYIPIAILWVI 198
             S+ W++P+L W +   Q      +    +   V  + +     + Y+P  ++   
Sbjct: 134 FLSFLWVIPILGWNHFMQQTSVRREDKCETDFYDVTWFKVMTAIINFYLPTLLMLWF 190


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.324    0.139    0.428 

Gapped
Lambda     K      H
   0.267   0.0616    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,095,951
Number of extensions: 234260
Number of successful extensions: 402
Number of sequences better than 10.0: 1
Number of HSP's gapped: 401
Number of HSP's successfully gapped: 13
Length of query: 273
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 181
Effective length of database: 4,133,061
Effective search space: 748084041
Effective search space used: 748084041
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (25.6 bits)