RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16302
         (273 letters)



>d1h3da2 d.58.5.3 (A:225-299) ATP phosphoribosyltransferase
           (ATP-PRTase, HisG), regulatory C-terminal domain
           {Escherichia coli [TaxId: 562]}
          Length = 75

 Score = 25.3 bits (56), Expect = 2.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)

Query: 220 ITSLLPAFRQPNILPL 235
           + +LLP   +P ILPL
Sbjct: 17  VIALLPGAERPTILPL 32


>d2c5wb1 e.3.1.1 (B:266-650) Penicillin-binding protein 1a,
           transpeptidase domain {Streptococcus pneumoniae [TaxId:
           1313]}
          Length = 385

 Score = 26.3 bits (56), Expect = 4.4
 Identities = 12/69 (17%), Positives = 25/69 (36%)

Query: 79  SVYPKFGDNYLQTYIQSKPDLYGPFWVCVTLIITIAISGNIANYLQAAATHKYHWKYDFH 138
           S YP + DNYL+  I    +  G   +   + +   +      +L        +  Y   
Sbjct: 1   SNYPAYMDNYLKEVINQVEEETGYNLLTTGMDVYTNVDQEAQKHLWDIYNTDEYVAYPDD 60

Query: 139 AISTSATAI 147
            +  ++T +
Sbjct: 61  ELQVASTIV 69


>d1nh8a2 d.58.5.3 (A:211-284) ATP phosphoribosyltransferase
           (ATP-PRTase, HisG), regulatory C-terminal domain
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 74

 Score = 24.6 bits (54), Expect = 4.4
 Identities = 6/16 (37%), Positives = 8/16 (50%)

Query: 220 ITSLLPAFRQPNILPL 235
            T++ P    P I PL
Sbjct: 17  ATAITPGLESPTIAPL 32


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.139    0.428 

Gapped
Lambda     K      H
   0.267   0.0390    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,007,712
Number of extensions: 45225
Number of successful extensions: 79
Number of sequences better than 10.0: 1
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 10
Length of query: 273
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 189
Effective length of database: 1,254,276
Effective search space: 237058164
Effective search space used: 237058164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.7 bits)