BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16304
(537 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 60/105 (57%), Gaps = 1/105 (0%)
Query: 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 368
R + +L+LGLDNAGK++I+K+ GE I ++ PT+GFN +E+ +++ ++D+GG +
Sbjct: 15 RELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEH-RGFKLNIWDVGGQKSL 73
Query: 369 RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQVYLMSCNCQVYLISA 413
R+ W+ Y + + V S + CQ L S + L A
Sbjct: 74 RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGA 118
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 48/68 (70%), Gaps = 1/68 (1%)
Query: 195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 254
R + +L+LGLDNAGK++I+K+ GE I ++ PT+GFN +E+ +++ ++D+GG +
Sbjct: 15 RELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEH-RGFKLNIWDVGGQKSL 73
Query: 255 RTIWKQYL 262
R+ W+ Y
Sbjct: 74 RSYWRNYF 81
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 60/105 (57%), Gaps = 1/105 (0%)
Query: 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 368
R + +L+LGLDNAGK++I+K+ GE + ++ PT+GFN +E+ +++ ++D+GG +
Sbjct: 17 RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEH-RGFKLNIWDVGGQKSL 75
Query: 369 RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQVYLMSCNCQVYLISA 413
R+ W+ Y + + V S + CQ L S + L A
Sbjct: 76 RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGA 120
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 48/68 (70%), Gaps = 1/68 (1%)
Query: 195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 254
R + +L+LGLDNAGK++I+K+ GE + ++ PT+GFN +E+ +++ ++D+GG +
Sbjct: 17 RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEH-RGFKLNIWDVGGQKSL 75
Query: 255 RTIWKQYL 262
R+ W+ Y
Sbjct: 76 RSYWRNYF 83
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 60/105 (57%), Gaps = 1/105 (0%)
Query: 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 368
R + +L+LGLDNAGK++I+K+ GE + ++ PT+GFN +E+ +++ ++D+GG +
Sbjct: 17 RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEH-RGFKLNIWDVGGQKSL 75
Query: 369 RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQVYLMSCNCQVYLISA 413
R+ W+ Y + + V S + CQ L S + L A
Sbjct: 76 RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGA 120
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 48/68 (70%), Gaps = 1/68 (1%)
Query: 195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 254
R + +L+LGLDNAGK++I+K+ GE + ++ PT+GFN +E+ +++ ++D+GG +
Sbjct: 17 RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEH-RGFKLNIWDVGGQKSL 75
Query: 255 RTIWKQYL 262
R+ W+ Y
Sbjct: 76 RSYWRNYF 83
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 58/101 (57%), Gaps = 1/101 (0%)
Query: 313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIW 372
+L+LGLDNAGK++I+K+ GE + ++ PT+GFN +E+ +++ ++D+GG + R+ W
Sbjct: 4 LLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEH-RGFKLNIWDVGGLKSLRSYW 62
Query: 373 KQYLGTVSQTLLVSHSLSGRPDDRCQVYLMSCNCQVYLISA 413
+ Y + + V S + CQ L S + L A
Sbjct: 63 RNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGA 103
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Query: 199 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIW 258
+L+LGLDNAGK++I+K+ GE + ++ PT+GFN +E+ +++ ++D+GG + R+ W
Sbjct: 4 LLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEH-RGFKLNIWDVGGLKSLRSYW 62
Query: 259 KQYL 262
+ Y
Sbjct: 63 RNYF 66
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Query: 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGN-KYEVFLYDLGGSED 367
R + IL+LGLD AGK++I+ R+ +++ +PT+GFN V Y N K++V +DLGG
Sbjct: 1 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQV--WDLGGQTS 58
Query: 368 FRTIWKQYLGTVSQTLLVSHS 388
R W+ Y + V S
Sbjct: 59 IRPYWRCYYSNTDAVIYVVDS 79
Score = 59.7 bits (143), Expect = 4e-09, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 44/68 (64%), Gaps = 3/68 (4%)
Query: 195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGN-KYEVFLYDLGGSED 253
R + IL+LGLD AGK++I+ R+ +++ +PT+GFN V Y N K++V +DLGG
Sbjct: 1 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQV--WDLGGQTS 58
Query: 254 FRTIWKQY 261
R W+ Y
Sbjct: 59 IRPYWRCY 66
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 186 PTHLSLFDFRSVPILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGNKYEVF 244
P LF + + IL++GLD AGK++I+ ++ LGE I++ +PT+GFN VEY N
Sbjct: 155 PQPRGLFGKKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEYKN-ISFT 212
Query: 245 LYDLGGSEDFRTIWKQYL 262
++D+GG + R +W+ Y
Sbjct: 213 VWDVGGQDKIRPLWRHYF 230
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 50/81 (61%), Gaps = 3/81 (3%)
Query: 309 RSVPILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSED 367
+ + IL++GLD AGK++I+ ++ LGE I++ +PT+GFN VEY N ++D+GG +
Sbjct: 164 KEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEYKN-ISFTVWDVGGQDK 221
Query: 368 FRTIWKQYLGTVSQTLLVSHS 388
R +W+ Y + V S
Sbjct: 222 IRPLWRHYFQNTQGLIFVVDS 242
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
Length = 166
Score = 60.1 bits (144), Expect = 3e-09, Method: Composition-based stats.
Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Query: 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGN-KYEVFLYDLGGSED 367
R + IL+LGLD AGK++I+ R+ +++ +PT+GFN V Y N K++V +DLGG
Sbjct: 3 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQV--WDLGGLTS 60
Query: 368 FRTIWKQYLGTVSQTLLVSHS 388
R W+ Y + V S
Sbjct: 61 IRPYWRCYYSNTDAVIYVVDS 81
Score = 58.9 bits (141), Expect = 7e-09, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 44/68 (64%), Gaps = 3/68 (4%)
Query: 195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGN-KYEVFLYDLGGSED 253
R + IL+LGLD AGK++I+ R+ +++ +PT+GFN V Y N K++V +DLGG
Sbjct: 3 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQV--WDLGGLTS 60
Query: 254 FRTIWKQY 261
R W+ Y
Sbjct: 61 IRPYWRCY 68
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 49/74 (66%), Gaps = 3/74 (4%)
Query: 190 SLFDFRSVPILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGNKYEVFLYDL 248
LF + + IL++GLD AGK++I+ ++ LGE I++ +PT+GFN VEY N ++D+
Sbjct: 11 GLFGKKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEYKN-ISFTVWDV 68
Query: 249 GGSEDFRTIWKQYL 262
GG + R +W+ Y
Sbjct: 69 GGQDKIRPLWRHYF 82
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 50/81 (61%), Gaps = 3/81 (3%)
Query: 309 RSVPILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSED 367
+ + IL++GLD AGK++I+ ++ LGE I++ +PT+GFN VEY N ++D+GG +
Sbjct: 16 KEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEYKN-ISFTVWDVGGQDK 73
Query: 368 FRTIWKQYLGTVSQTLLVSHS 388
R +W+ Y + V S
Sbjct: 74 IRPLWRHYFQNTQGLIFVVDS 94
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 49/74 (66%), Gaps = 3/74 (4%)
Query: 190 SLFDFRSVPILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGNKYEVFLYDL 248
LF + + IL++GLD AGK++I+ ++ LGE I++ +PT+GFN VEY N ++D+
Sbjct: 10 GLFGKKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEYKN-ISFTVWDV 67
Query: 249 GGSEDFRTIWKQYL 262
GG + R +W+ Y
Sbjct: 68 GGQDKIRPLWRHYF 81
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 50/81 (61%), Gaps = 3/81 (3%)
Query: 309 RSVPILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSED 367
+ + IL++GLD AGK++I+ ++ LGE I++ +PT+GFN VEY N ++D+GG +
Sbjct: 15 KEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEYKN-ISFTVWDVGGQDK 72
Query: 368 FRTIWKQYLGTVSQTLLVSHS 388
R +W+ Y + V S
Sbjct: 73 IRPLWRHYFQNTQGLIFVVDS 93
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 49/73 (67%), Gaps = 3/73 (4%)
Query: 191 LFDFRSVPILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGNKYEVFLYDLG 249
LF + + IL++GLD AGK++I+ ++ LGE I++ +PT+GFN VEY N ++D+G
Sbjct: 15 LFAKKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEYKN-ISFTVWDVG 72
Query: 250 GSEDFRTIWKQYL 262
G + R +W+ Y
Sbjct: 73 GQDKIRPLWRHYF 85
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 50/81 (61%), Gaps = 3/81 (3%)
Query: 309 RSVPILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSED 367
+ + IL++GLD AGK++I+ ++ LGE I++ +PT+GFN VEY N ++D+GG +
Sbjct: 19 KEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEYKN-ISFTVWDVGGQDK 76
Query: 368 FRTIWKQYLGTVSQTLLVSHS 388
R +W+ Y + V S
Sbjct: 77 IRPLWRHYFQNTQGLIFVVDS 97
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
Length = 171
Score = 59.3 bits (142), Expect = 5e-09, Method: Composition-based stats.
Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGN-KYEVFLYDLGGSED 367
R IL+LGLD AGK++I+ R+ +++ +PT+GFN V Y N K++V +DLGG
Sbjct: 6 REXRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQV--WDLGGLTS 63
Query: 368 FRTIWKQYLGTVSQTLLVSHS 388
R W+ Y + V S
Sbjct: 64 IRPYWRCYYSNTDAVIYVVDS 84
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 43/68 (63%), Gaps = 3/68 (4%)
Query: 195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGN-KYEVFLYDLGGSED 253
R IL+LGLD AGK++I+ R+ +++ +PT+GFN V Y N K++V +DLGG
Sbjct: 6 REXRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQV--WDLGGLTS 63
Query: 254 FRTIWKQY 261
R W+ Y
Sbjct: 64 IRPYWRCY 71
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
Query: 305 LVDFRSVPILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGNKYEVFLYDLG 363
L+ + + IL++GLD AGK+SI+ ++ LGE I++ +PT+GFN VEY N ++D+G
Sbjct: 12 LLGKKEMRILMVGLDAAGKTSILYKLKLGE-IVTTIPTIGFNVETVEYKN-ISFTVWDVG 69
Query: 364 GSEDFRTIWKQYLGTVSQTLLVSHS 388
G + R +W+ Y + V S
Sbjct: 70 GQDKIRPLWRHYYQNTQAIIFVVDS 94
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%), Gaps = 3/73 (4%)
Query: 190 SLFDFRSVPILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGNKYEVFLYDL 248
L + + IL++GLD AGK+SI+ ++ LGE I++ +PT+GFN VEY N ++D+
Sbjct: 11 KLLGKKEMRILMVGLDAAGKTSILYKLKLGE-IVTTIPTIGFNVETVEYKN-ISFTVWDV 68
Query: 249 GGSEDFRTIWKQY 261
GG + R +W+ Y
Sbjct: 69 GGQDKIRPLWRHY 81
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 3/73 (4%)
Query: 191 LFDFRSVPILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGNKYEVFLYDLG 249
LF + + IL++GLD AGK++I+ ++ LGE I++ +PT+GFN VEY N ++D+G
Sbjct: 12 LFGKKQMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEYKN-ICFTVWDVG 69
Query: 250 GSEDFRTIWKQYL 262
G + R +WK Y
Sbjct: 70 GQDRIRPLWKHYF 82
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 50/81 (61%), Gaps = 3/81 (3%)
Query: 309 RSVPILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSED 367
+ + IL++GLD AGK++I+ ++ LGE I++ +PT+GFN VEY N ++D+GG +
Sbjct: 16 KQMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEYKN-ICFTVWDVGGQDR 73
Query: 368 FRTIWKQYLGTVSQTLLVSHS 388
R +WK Y + V S
Sbjct: 74 IRPLWKHYFQNTQGLIFVVDS 94
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 49/72 (68%), Gaps = 3/72 (4%)
Query: 191 LFDFRSVPILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGNKYEVFLYDLG 249
LF + V IL++GLD AGK++I+ ++ LGE +++ +PT+GFN VE+ N ++D+G
Sbjct: 12 LFQKKDVRILMVGLDAAGKTTILYKVKLGE-VVTTIPTIGFNVETVEFRN-ISFTVWDVG 69
Query: 250 GSEDFRTIWKQY 261
G + R +W+ Y
Sbjct: 70 GQDKIRPLWRHY 81
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 50/81 (61%), Gaps = 3/81 (3%)
Query: 309 RSVPILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSED 367
+ V IL++GLD AGK++I+ ++ LGE +++ +PT+GFN VE+ N ++D+GG +
Sbjct: 16 KDVRILMVGLDAAGKTTILYKVKLGE-VVTTIPTIGFNVETVEFRN-ISFTVWDVGGQDK 73
Query: 368 FRTIWKQYLGTVSQTLLVSHS 388
R +W+ Y + V S
Sbjct: 74 IRPLWRHYYSNTDGLIFVVDS 94
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 51/73 (69%), Gaps = 3/73 (4%)
Query: 190 SLFDFRSVPILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGNKYEVFLYDL 248
+LF + + IL++GLD AGK++++ ++ LGE +I+ +PT+GFN V+Y N ++D+
Sbjct: 11 NLFGNKEMRILMVGLDGAGKTTVLYKLKLGE-VITTIPTIGFNVETVQYKN-ISFTVWDV 68
Query: 249 GGSEDFRTIWKQY 261
GG + R++W+ Y
Sbjct: 69 GGQDRIRSLWRHY 81
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 56/92 (60%), Gaps = 8/92 (8%)
Query: 309 RSVPILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSED 367
+ + IL++GLD AGK++++ ++ LGE +I+ +PT+GFN V+Y N ++D+GG +
Sbjct: 16 KEMRILMVGLDGAGKTTVLYKLKLGE-VITTIPTIGFNVETVQYKN-ISFTVWDVGGQDR 73
Query: 368 FRTIWKQYLGTVSQTLLVSHSLSGRPDDRCQV 399
R++W+ Y + V S +DR ++
Sbjct: 74 IRSLWRHYYRNTEGVIFVVDS-----NDRSRI 100
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 51/73 (69%), Gaps = 3/73 (4%)
Query: 190 SLFDFRSVPILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGNKYEVFLYDL 248
+LF + + IL++GLD AGK++++ ++ LGE +I+ +PT+GFN V+Y N ++D+
Sbjct: 11 NLFGNKEMRILMVGLDGAGKTTVLYKLKLGE-VITTIPTIGFNVETVQYKN-ISFTVWDV 68
Query: 249 GGSEDFRTIWKQY 261
GG + R++W+ Y
Sbjct: 69 GGQDRIRSLWRHY 81
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 56/92 (60%), Gaps = 8/92 (8%)
Query: 309 RSVPILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSED 367
+ + IL++GLD AGK++++ ++ LGE +I+ +PT+GFN V+Y N ++D+GG +
Sbjct: 16 KEMRILMVGLDGAGKTTVLYKLKLGE-VITTIPTIGFNVETVQYKN-ISFTVWDVGGQDR 73
Query: 368 FRTIWKQYLGTVSQTLLVSHSLSGRPDDRCQV 399
R++W+ Y + V S +DR ++
Sbjct: 74 IRSLWRHYYRNTEGVIFVIDS-----NDRSRI 100
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 51/73 (69%), Gaps = 3/73 (4%)
Query: 190 SLFDFRSVPILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGNKYEVFLYDL 248
+LF + + IL++GLD AGK++++ ++ LGE +I+ +PT+GFN V+Y N ++D+
Sbjct: 11 NLFGNKEMRILMVGLDGAGKTTVLYKLKLGE-VITTIPTIGFNVECVQYCN-ISFTVWDV 68
Query: 249 GGSEDFRTIWKQY 261
GG + R++W+ Y
Sbjct: 69 GGQDRIRSLWRHY 81
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 51/81 (62%), Gaps = 3/81 (3%)
Query: 309 RSVPILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSED 367
+ + IL++GLD AGK++++ ++ LGE +I+ +PT+GFN V+Y N ++D+GG +
Sbjct: 16 KEMRILMVGLDGAGKTTVLYKLKLGE-VITTIPTIGFNVECVQYCN-ISFTVWDVGGQDR 73
Query: 368 FRTIWKQYLGTVSQTLLVSHS 388
R++W+ Y + V S
Sbjct: 74 IRSLWRHYYCNTEGVIFVVDS 94
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
Query: 310 SVPILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 368
S+ IL++GLD AGK++I+ ++ LGE I++ +PT+GFN VEY N ++D+GG +
Sbjct: 2 SMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEYKN-ISFTVWDVGGLDKI 59
Query: 369 RTIWKQYLGTVSQTLLVSHS 388
R +W+ Y + V S
Sbjct: 60 RPLWRHYFQNTQGLIFVVDS 79
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 47/68 (69%), Gaps = 3/68 (4%)
Query: 196 SVPILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 254
S+ IL++GLD AGK++I+ ++ LGE I++ +PT+GFN VEY N ++D+GG +
Sbjct: 2 SMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEYKN-ISFTVWDVGGLDKI 59
Query: 255 RTIWKQYL 262
R +W+ Y
Sbjct: 60 RPLWRHYF 67
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 319 DNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGT 378
DNAGK++I+K+ GE + ++ PT+GFN +E+ +++ ++D+GG + R+ W+ Y +
Sbjct: 27 DNAGKTTILKKFNGEDVDTISPTLGFNIKTLEH-RGFKLNIWDVGGQKSLRSYWRNYFES 85
Query: 379 VSQTLLVSHSLSGRPDDRCQVYLMSCNCQVYLISA 413
+ V S + CQ L S + L A
Sbjct: 86 TDGLIWVVDSADRQRXQDCQRELQSLLVEERLAGA 120
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
Query: 205 DNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYL 262
DNAGK++I+K+ GE + ++ PT+GFN +E+ +++ ++D+GG + R+ W+ Y
Sbjct: 27 DNAGKTTILKKFNGEDVDTISPTLGFNIKTLEH-RGFKLNIWDVGGQKSLRSYWRNYF 83
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 48/77 (62%), Gaps = 3/77 (3%)
Query: 313 ILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTI 371
IL++GLD AGK++I+ ++ LGE I++ +PT+GFN VEY N ++D+GG + R +
Sbjct: 3 ILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEYKN-ISFTVWDVGGQDKIRPL 60
Query: 372 WKQYLGTVSQTLLVSHS 388
W+ Y + V S
Sbjct: 61 WRHYFQNTQGLIFVVDS 77
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 45/65 (69%), Gaps = 3/65 (4%)
Query: 199 ILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTI 257
IL++GLD AGK++I+ ++ LGE I++ +PT+GFN VEY N ++D+GG + R +
Sbjct: 3 ILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEYKN-ISFTVWDVGGQDKIRPL 60
Query: 258 WKQYL 262
W+ Y
Sbjct: 61 WRHYF 65
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 49/73 (67%), Gaps = 3/73 (4%)
Query: 191 LFDFRSVPILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGNKYEVFLYDLG 249
+F + + IL++GLD AGK++I+ ++ LGE I++ +PT+GFN VEY N ++D+G
Sbjct: 24 IFGKKQMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEYKN-ICFTVWDVG 81
Query: 250 GSEDFRTIWKQYL 262
G + R +W+ Y
Sbjct: 82 GQDKIRPLWRHYF 94
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 50/81 (61%), Gaps = 3/81 (3%)
Query: 309 RSVPILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSED 367
+ + IL++GLD AGK++I+ ++ LGE I++ +PT+GFN VEY N ++D+GG +
Sbjct: 28 KQMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEYKN-ICFTVWDVGGQDK 85
Query: 368 FRTIWKQYLGTVSQTLLVSHS 388
R +W+ Y + V S
Sbjct: 86 IRPLWRHYFQNTQGLIFVVDS 106
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 254
+ V IL+LGLDNAGK++++K++ E I + PT GFN V+ +++ ++D+GG
Sbjct: 16 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQ-SQGFKLNVWDIGGQRKI 74
Query: 255 RTIWKQYL 262
R W+ Y
Sbjct: 75 RPYWRSYF 82
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 368
+ V IL+LGLDNAGK++++K++ E I + PT GFN V+ +++ ++D+GG
Sbjct: 16 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQ-SQGFKLNVWDIGGQRKI 74
Query: 369 RTIWKQYL 376
R W+ Y
Sbjct: 75 RPYWRSYF 82
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 254
+ V IL+LGLDNAGK++++K++ E I + PT GFN V+ +++ ++D+GG
Sbjct: 15 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQ-SQGFKLNVWDIGGQRKI 73
Query: 255 RTIWKQYL 262
R W+ Y
Sbjct: 74 RPYWRSYF 81
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 368
+ V IL+LGLDNAGK++++K++ E I + PT GFN V+ +++ ++D+GG
Sbjct: 15 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQ-SQGFKLNVWDIGGQRKI 73
Query: 369 RTIWKQYL 376
R W+ Y
Sbjct: 74 RPYWRSYF 81
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 197 VPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRT 256
V IL+LGLDNAGK++++K++ E I + PT GFN V+ +++ ++D+GG R
Sbjct: 5 VRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQ-SQGFKLNVWDIGGQRKIRP 63
Query: 257 IWKQYL 262
W+ Y
Sbjct: 64 YWRSYF 69
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 311 VPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRT 370
V IL+LGLDNAGK++++K++ E I + PT GFN V+ +++ ++D+GG R
Sbjct: 5 VRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQ-SQGFKLNVWDIGGQRKIRP 63
Query: 371 IWKQYL 376
W+ Y
Sbjct: 64 YWRSYF 69
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 54/88 (61%), Gaps = 8/88 (9%)
Query: 313 ILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTI 371
IL++GLD AGK++++ ++ LGE +I+ +PT+GFN V+Y N ++D+GG + R++
Sbjct: 3 ILMVGLDGAGKTTVLYKLKLGE-VITTIPTIGFNVETVQYKN-ISFTVWDVGGQDRIRSL 60
Query: 372 WKQYLGTVSQTLLVSHSLSGRPDDRCQV 399
W+ Y + V S +DR ++
Sbjct: 61 WRHYYRNTEGVIFVVDS-----NDRSRI 83
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 46/64 (71%), Gaps = 3/64 (4%)
Query: 199 ILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTI 257
IL++GLD AGK++++ ++ LGE +I+ +PT+GFN V+Y N ++D+GG + R++
Sbjct: 3 ILMVGLDGAGKTTVLYKLKLGE-VITTIPTIGFNVETVQYKN-ISFTVWDVGGQDRIRSL 60
Query: 258 WKQY 261
W+ Y
Sbjct: 61 WRHY 64
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 190 SLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGN-KYEVFLYDL 248
+F + + IL+LGLD AGK++I+ ++ ++ +PTVGFN V Y N K+ V +D+
Sbjct: 7 KIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNV--WDV 64
Query: 249 GGSEDFRTIWKQY 261
GG + R +W+ Y
Sbjct: 65 GGQDKIRPLWRHY 77
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 53/92 (57%), Gaps = 4/92 (4%)
Query: 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGN-KYEVFLYDLGGSED 367
+ + IL+LGLD AGK++I+ ++ ++ +PTVGFN V Y N K+ V +D+GG +
Sbjct: 12 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNV--WDVGGQDK 69
Query: 368 FRTIWKQYL-GTVSQTLLVSHSLSGRPDDRCQ 398
R +W+ Y GT +V + R D+ Q
Sbjct: 70 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ 101
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 190 SLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGN-KYEVFLYDL 248
+F + + IL+LGLD AGK++I+ ++ ++ +PTVGFN V Y N K+ V +D+
Sbjct: 6 KIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNV--WDV 63
Query: 249 GGSEDFRTIWKQY 261
GG + R +W+ Y
Sbjct: 64 GGQDKIRPLWRHY 76
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 53/92 (57%), Gaps = 4/92 (4%)
Query: 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGN-KYEVFLYDLGGSED 367
+ + IL+LGLD AGK++I+ ++ ++ +PTVGFN V Y N K+ V +D+GG +
Sbjct: 11 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNV--WDVGGQDK 68
Query: 368 FRTIWKQYL-GTVSQTLLVSHSLSGRPDDRCQ 398
R +W+ Y GT +V + R D+ Q
Sbjct: 69 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ 100
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 197 VPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRT 256
V IL+LGLDNAGK++++K++ E I + PT GFN V+ +++ ++D+GG R
Sbjct: 5 VRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQ-SQGFKLNVWDIGGLRKIRP 63
Query: 257 IWKQYL 262
W+ Y
Sbjct: 64 YWRSYF 69
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 311 VPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRT 370
V IL+LGLDNAGK++++K++ E I + PT GFN V+ +++ ++D+GG R
Sbjct: 5 VRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQ-SQGFKLNVWDIGGLRKIRP 63
Query: 371 IWKQYL 376
W+ Y
Sbjct: 64 YWRSYF 69
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 368
+ + IL+LGLD AGK++I+ R+ +++ PT+GFN + Y N ++ ++DLGG
Sbjct: 17 KELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKN-LKLNVWDLGGQTSI 75
Query: 369 RTIWKQYLGTVSQTLLVSHS 388
R W+ Y + + V S
Sbjct: 76 RPYWRCYYADTAAVIFVVDS 95
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 6/77 (7%)
Query: 190 SLFDF-----RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVF 244
S+FD + + IL+LGLD AGK++I+ R+ +++ PT+GFN + Y N ++
Sbjct: 7 SMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKN-LKLN 65
Query: 245 LYDLGGSEDFRTIWKQY 261
++DLGG R W+ Y
Sbjct: 66 VWDLGGQTSIRPYWRCY 82
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 49/77 (63%), Gaps = 4/77 (5%)
Query: 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGN-KYEVFLYDLGGSED 367
+ + IL+LGLD AGK++I+ ++ ++ +PTVGFN V Y N K+ V +D+GG +
Sbjct: 321 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNV--WDVGGQDK 378
Query: 368 FRTIWKQYLGTVSQTLL 384
R +W+ Y T +Q L+
Sbjct: 379 IRPLWRHYY-TGTQGLI 394
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 44/68 (64%), Gaps = 3/68 (4%)
Query: 195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGN-KYEVFLYDLGGSED 253
+ + IL+LGLD AGK++I+ ++ ++ +PTVGFN V Y N K+ V +D+GG +
Sbjct: 321 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNV--WDVGGQDK 378
Query: 254 FRTIWKQY 261
R +W+ Y
Sbjct: 379 IRPLWRHY 386
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 54.7 bits (130), Expect = 1e-07, Method: Composition-based stats.
Identities = 35/89 (39%), Positives = 53/89 (59%), Gaps = 6/89 (6%)
Query: 313 ILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGN-KYEVFLYDLGGSEDFRT 370
IL LGLD AGK++I+ ++ LG+ + + +PTVGFN V Y N K+ V +D+GG + R
Sbjct: 3 ILXLGLDAAGKTTILYKLKLGQSVTT-IPTVGFNVETVTYKNVKFNV--WDVGGQDKIRP 59
Query: 371 IWKQYL-GTVSQTLLVSHSLSGRPDDRCQ 398
+W+ Y GT +V + R D+ Q
Sbjct: 60 LWRHYYTGTQGLIFVVDCADRDRIDEARQ 88
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/65 (44%), Positives = 44/65 (67%), Gaps = 5/65 (7%)
Query: 199 ILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGN-KYEVFLYDLGGSEDFRT 256
IL LGLD AGK++I+ ++ LG+ + + +PTVGFN V Y N K+ V +D+GG + R
Sbjct: 3 ILXLGLDAAGKTTILYKLKLGQSVTT-IPTVGFNVETVTYKNVKFNV--WDVGGQDKIRP 59
Query: 257 IWKQY 261
+W+ Y
Sbjct: 60 LWRHY 64
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 49/74 (66%), Gaps = 5/74 (6%)
Query: 190 SLFDFRSVPILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGN-KYEVFLYD 247
+F + + IL+LGLD AGK++I+ ++ LG+ + + +PTVGFN V Y N K+ V +D
Sbjct: 7 KIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVGFNVETVTYKNVKFNV--WD 63
Query: 248 LGGSEDFRTIWKQY 261
+GG + R +W+ Y
Sbjct: 64 VGGLDKIRPLWRHY 77
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 56/93 (60%), Gaps = 6/93 (6%)
Query: 309 RSVPILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGN-KYEVFLYDLGGSE 366
+ + IL+LGLD AGK++I+ ++ LG+ + + +PTVGFN V Y N K+ V +D+GG +
Sbjct: 12 KEMRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVGFNVETVTYKNVKFNV--WDVGGLD 68
Query: 367 DFRTIWKQYL-GTVSQTLLVSHSLSGRPDDRCQ 398
R +W+ Y GT +V + R D+ Q
Sbjct: 69 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ 101
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 54/89 (60%), Gaps = 6/89 (6%)
Query: 313 ILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGN-KYEVFLYDLGGSEDFRT 370
IL+LGLD AGK++I+ ++ LG+ + + +PTVGFN V Y N K+ V +D+GG + R
Sbjct: 3 ILMLGLDAAGKTTILYKLKLGQSVTT-IPTVGFNVETVTYKNVKFNV--WDVGGQDKIRP 59
Query: 371 IWKQYL-GTVSQTLLVSHSLSGRPDDRCQ 398
+W+ Y GT +V + R D+ Q
Sbjct: 60 LWRHYYTGTQGLIFVVDCADRDRIDEARQ 88
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 45/65 (69%), Gaps = 5/65 (7%)
Query: 199 ILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGN-KYEVFLYDLGGSEDFRT 256
IL+LGLD AGK++I+ ++ LG+ + + +PTVGFN V Y N K+ V +D+GG + R
Sbjct: 3 ILMLGLDAAGKTTILYKLKLGQSVTT-IPTVGFNVETVTYKNVKFNV--WDVGGQDKIRP 59
Query: 257 IWKQY 261
+W+ Y
Sbjct: 60 LWRHY 64
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 54/89 (60%), Gaps = 6/89 (6%)
Query: 313 ILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGN-KYEVFLYDLGGSEDFRT 370
IL+LGLD AGK++I+ ++ LG+ + + +PTVGFN V Y N K+ V +D+GG + R
Sbjct: 3 ILMLGLDAAGKTTILYKLKLGQSVTT-IPTVGFNVETVTYKNVKFNV--WDVGGQDKIRP 59
Query: 371 IWKQYL-GTVSQTLLVSHSLSGRPDDRCQ 398
+W+ Y GT +V + R D+ Q
Sbjct: 60 LWRHYYTGTQGLIFVVDCADRDRIDEARQ 88
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 45/65 (69%), Gaps = 5/65 (7%)
Query: 199 ILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGN-KYEVFLYDLGGSEDFRT 256
IL+LGLD AGK++I+ ++ LG+ + + +PTVGFN V Y N K+ V +D+GG + R
Sbjct: 3 ILMLGLDAAGKTTILYKLKLGQSVTT-IPTVGFNVETVTYKNVKFNV--WDVGGQDKIRP 59
Query: 257 IWKQY 261
+W+ Y
Sbjct: 60 LWRHY 64
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 54/89 (60%), Gaps = 6/89 (6%)
Query: 313 ILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGN-KYEVFLYDLGGSEDFRT 370
IL+LGLD AGK++I+ ++ LG+ + + +PTVGFN V Y N K+ V +D+GG + R
Sbjct: 6 ILMLGLDAAGKTTILYKLKLGQSVTT-IPTVGFNVETVTYKNVKFNV--WDVGGLDKIRP 62
Query: 371 IWKQYL-GTVSQTLLVSHSLSGRPDDRCQ 398
+W+ Y GT +V + R D+ Q
Sbjct: 63 LWRHYYTGTQGLIFVVDCADRDRIDEARQ 91
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 45/65 (69%), Gaps = 5/65 (7%)
Query: 199 ILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGN-KYEVFLYDLGGSEDFRT 256
IL+LGLD AGK++I+ ++ LG+ + + +PTVGFN V Y N K+ V +D+GG + R
Sbjct: 6 ILMLGLDAAGKTTILYKLKLGQSVTT-IPTVGFNVETVTYKNVKFNV--WDVGGLDKIRP 62
Query: 257 IWKQY 261
+W+ Y
Sbjct: 63 LWRHY 67
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 54/89 (60%), Gaps = 6/89 (6%)
Query: 313 ILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGN-KYEVFLYDLGGSEDFRT 370
IL+LGLD AGK++I+ ++ LG+ + + +PTVGFN V Y N K+ V +D+GG + R
Sbjct: 5 ILMLGLDAAGKTTILYKLKLGQSVTT-IPTVGFNVETVTYKNVKFNV--WDVGGLDKIRP 61
Query: 371 IWKQYL-GTVSQTLLVSHSLSGRPDDRCQ 398
+W+ Y GT +V + R D+ Q
Sbjct: 62 LWRHYYTGTQGLIFVVDCADRDRIDEARQ 90
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 45/65 (69%), Gaps = 5/65 (7%)
Query: 199 ILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGN-KYEVFLYDLGGSEDFRT 256
IL+LGLD AGK++I+ ++ LG+ + + +PTVGFN V Y N K+ V +D+GG + R
Sbjct: 5 ILMLGLDAAGKTTILYKLKLGQSVTT-IPTVGFNVETVTYKNVKFNV--WDVGGLDKIRP 61
Query: 257 IWKQY 261
+W+ Y
Sbjct: 62 LWRHY 66
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 190 SLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLG 249
SLF + ++++GLDNAGK++I+ + L ++ PT+G N + N + ++D+G
Sbjct: 10 SLFCNQEHKVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVEEIVVKNTH-FLMWDIG 68
Query: 250 GSEDFRTIWKQY 261
G E R+ W Y
Sbjct: 69 GQESLRSSWNTY 80
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 312 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTI 371
++++GLDNAGK++I+ + L ++ PT+G N + N + ++D+GG E R+
Sbjct: 18 KVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVEEIVVKNTH-FLMWDIGGQESLRSS 76
Query: 372 WKQYLGTVSQTLLVSHSL 389
W Y +LV S+
Sbjct: 77 WNTYYSNTEFIILVVDSI 94
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 66/130 (50%), Gaps = 16/130 (12%)
Query: 190 SLFDFRSVPILVLGLDNAGKSSIIKRIL-GEPIISLVPTVGFNRARVEYGNKYEVFLYDL 248
+LF + + ++GL +GK++ + I G+ ++PTVGFN ++ GN + L+D+
Sbjct: 25 ALFWKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGN-VTIKLWDI 83
Query: 249 GGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLI-MCGVHQVSGIPDELTSATHLPLVD 307
GG FR++W++Y VS VY++ ++ +EL + P
Sbjct: 84 GGQPRFRSMWERYCRGVSAI-----------VYMVDAADQEKIEASKNELHNLLDKP--Q 130
Query: 308 FRSVPILVLG 317
+ +P+LVLG
Sbjct: 131 LQGIPVLVLG 140
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Query: 309 RSVPILVLGLDNAGKSSIIKRIL-GEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSED 367
+ + ++GL +GK++ + I G+ ++PTVGFN ++ GN + L+D+GG
Sbjct: 30 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGN-VTIKLWDIGGQPR 88
Query: 368 FRTIWKQYLGTVS 380
FR++W++Y VS
Sbjct: 89 FRSMWERYCRGVS 101
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 183 VLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYE 242
+L LF+ + ++++GLDNAGK++I+ + ++ PT+G N + N
Sbjct: 3 ILFTRIWRLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNT-R 61
Query: 243 VFLYDLGGSEDFRTIWKQY 261
++D+GG E R+ W Y
Sbjct: 62 FLMWDIGGQESLRSSWNTY 80
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 305 LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGG 364
L + + ++++GLDNAGK++I+ + ++ PT+G N + N ++D+GG
Sbjct: 11 LFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNT-RFLMWDIGG 69
Query: 365 SEDFRTIWKQY 375
E R+ W Y
Sbjct: 70 QESLRSSWNTY 80
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 183 VLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYE 242
+L LF+ + ++++GLDNAGK++I+ + ++ PT+G N + N
Sbjct: 3 ILFTRIWRLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNT-R 61
Query: 243 VFLYDLGGSEDFRTIWKQY 261
++D+GG E R+ W Y
Sbjct: 62 FLMWDIGGQESLRSSWNTY 80
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 305 LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGG 364
L + + ++++GLDNAGK++I+ + ++ PT+G N + N ++D+GG
Sbjct: 11 LFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNT-RFLMWDIGG 69
Query: 365 SEDFRTIWKQY 375
E R+ W Y
Sbjct: 70 QESLRSSWNTY 80
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 63/124 (50%), Gaps = 16/124 (12%)
Query: 196 SVPILVLGLDNAGKSSIIKRIL-GEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 254
+ + ++GL +GK++ + I G+ ++PTVGFN ++ GN + L+D+GG F
Sbjct: 22 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGN-VTIKLWDIGGQPRF 80
Query: 255 RTIWKQYLGTVSQTPLGRPDSRTCQVYLI-MCGVHQVSGIPDELTSATHLPLVDFRSVPI 313
R++W++Y VS VY++ ++ +EL + P + +P+
Sbjct: 81 RSMWERYCRGVSAI-----------VYMVDAADQEKIEASKNELHNLLDKP--QLQGIPV 127
Query: 314 LVLG 317
LVLG
Sbjct: 128 LVLG 131
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 303 LPLVDFRSVPILVLGLDNAGKSSIIKRIL-GEPIISLVPTVGFNRARVEYGNKYEVFLYD 361
+P + + ++GL +GK++ + I G+ ++PTVGFN ++ GN + L+D
Sbjct: 15 VPRGSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGN-VTIKLWD 73
Query: 362 LGGSEDFRTIWKQYLGTVS 380
+GG FR++W++Y VS
Sbjct: 74 IGGQPRFRSMWERYCRGVS 92
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 63/124 (50%), Gaps = 16/124 (12%)
Query: 196 SVPILVLGLDNAGKSSIIKRIL-GEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 254
+ + ++GL +GK++ + I G+ ++PTVGFN +V GN + ++D+GG F
Sbjct: 22 EMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGN-VTIKIWDIGGQPRF 80
Query: 255 RTIWKQYLGTVSQTPLGRPDSRTCQVYLI-MCGVHQVSGIPDELTSATHLPLVDFRSVPI 313
R++W++Y V+ VY+I ++ +EL + P + +P+
Sbjct: 81 RSMWERYCRGVNAI-----------VYMIDAADREKIEASRNELHNLLDKP--QLQGIPV 127
Query: 314 LVLG 317
LVLG
Sbjct: 128 LVLG 131
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Query: 303 LPLVDFRSVPILVLGLDNAGKSSIIKRIL-GEPIISLVPTVGFNRARVEYGNKYEVFLYD 361
+P + + ++GL +GK++ + I G+ ++PTVGFN +V GN + ++D
Sbjct: 15 VPRGSKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGN-VTIKIWD 73
Query: 362 LGGSEDFRTIWKQY 375
+GG FR++W++Y
Sbjct: 74 IGGQPRFRSMWERY 87
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 303 LPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDL 362
+P + ++++GLDNAGK++I+ + ++ PT+G N + N ++D+
Sbjct: 15 VPRGSHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNT-RFLMWDI 73
Query: 363 GGSEDFRTIWKQY 375
GG E R+ W Y
Sbjct: 74 GGQESLRSSWNTY 86
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 198 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTI 257
++++GLDNAGK++I+ + ++ PT+G N + N ++D+GG E R+
Sbjct: 24 KVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNT-RFLMWDIGGQESLRSS 82
Query: 258 WKQY 261
W Y
Sbjct: 83 WNTY 86
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 198 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTI 257
++++GLDNAGK++I+ + ++ PT+G N + N ++D+GG E R+
Sbjct: 23 KVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNT-RFLMWDIGGQESLRSS 81
Query: 258 WKQY 261
W Y
Sbjct: 82 WNTY 85
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 312 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTI 371
++++GLDNAGK++I+ + ++ PT+G N + N ++D+GG E R+
Sbjct: 23 KVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNT-RFLMWDIGGQESLRSS 81
Query: 372 WKQY 375
W Y
Sbjct: 82 WNTY 85
>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma
Brucei With Bound Nucleotide Analogue Gppnp
Length = 199
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 47/82 (57%), Gaps = 7/82 (8%)
Query: 311 VPILVLGLDNAGKSSIIKRILGEPIIS----LVPTVGFNRARVEYGNKYEVFLYDLGGSE 366
+ +++ GLDN+GK++II ++ +P S + TVG+N E G + ++D+GG++
Sbjct: 18 LQVVMCGLDNSGKTTIINQV--KPAQSSSKHITATVGYNVETFEKG-RVAFTVFDMGGAK 74
Query: 367 DFRTIWKQYLGTVSQTLLVSHS 388
FR +W+ Y + + V S
Sbjct: 75 KFRGLWETYYDNIDAVIFVVDS 96
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 43/69 (62%), Gaps = 7/69 (10%)
Query: 197 VPILVLGLDNAGKSSIIKRILGEPIIS----LVPTVGFNRARVEYGNKYEVFLYDLGGSE 252
+ +++ GLDN+GK++II ++ +P S + TVG+N E G + ++D+GG++
Sbjct: 18 LQVVMCGLDNSGKTTIINQV--KPAQSSSKHITATVGYNVETFEKG-RVAFTVFDMGGAK 74
Query: 253 DFRTIWKQY 261
FR +W+ Y
Sbjct: 75 KFRGLWETY 83
>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment
Of Sec31
Length = 167
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGN-KYEVFLYDLGGSEDFRTI 371
+L LGLDNAGK++++ + + + +L PT + GN K+ F DLGG R +
Sbjct: 4 LLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTF--DLGGHIQARRL 61
Query: 372 WKQYLGTVSQTLLVSHSLSGRPDDRCQVYL 401
WK Y V+ + + + D +V L
Sbjct: 62 WKDYFPEVNGIVFLVDAADPERFDEARVEL 91
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 199 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGN-KYEVFLYDLGGSEDFRTI 257
+L LGLDNAGK++++ + + + +L PT + GN K+ F DLGG R +
Sbjct: 4 LLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTF--DLGGHIQARRL 61
Query: 258 WKQYLGTVS 266
WK Y V+
Sbjct: 62 WKDYFPEVN 70
>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|D Chain D, Crystal Structure Of The Sec23-Sar1 Complex
Length = 190
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGN-KYEVFLYDLGGSEDFRTI 371
+L LGLDNAGK++++ + + + +L PT + GN K+ F DLGG R +
Sbjct: 26 LLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTF--DLGGHIQARRL 83
Query: 372 WKQYLGTVSQTLLVSHSLSGRPDDRCQVYL 401
WK Y V+ + + + D +V L
Sbjct: 84 WKDYFPEVNGIVFLVDAADPERFDEARVEL 113
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 199 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGN-KYEVFLYDLGGSEDFRTI 257
+L LGLDNAGK++++ + + + +L PT + GN K+ F DLGG R +
Sbjct: 26 LLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTF--DLGGHIQARRL 83
Query: 258 WKQYLGTVS 266
WK Y V+
Sbjct: 84 WKDYFPEVN 92
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 195 RSVPILVLGLDNAGKSSIIKRILGEPIIS--LVPTVGFNRARVEYGNKYEVFLYDLGGSE 252
+ V +L LGLDN+GK++II ++ S ++PT+GF+ + + + ++D+ G
Sbjct: 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFK-SSSLSFTVFDMSGQG 78
Query: 253 DFRTIWKQY 261
+R +W+ Y
Sbjct: 79 RYRNLWEHY 87
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 309 RSVPILVLGLDNAGKSSIIKRILGEPIIS--LVPTVGFNRARVEYGNKYEVFLYDLGGSE 366
+ V +L LGLDN+GK++II ++ S ++PT+GF+ + + + ++D+ G
Sbjct: 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFK-SSSLSFTVFDMSGQG 78
Query: 367 DFRTIWKQY 375
+R +W+ Y
Sbjct: 79 RYRNLWEHY 87
>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp
pdb|2GAO|B Chain B, Crystal Structure Of Human Sar1a In Complex With Gdp
Length = 208
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 21/127 (16%)
Query: 195 RSVPILVLGLDNAGKSSIIKRI----LGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGG 250
+S ++ LGLDNAGK++++ + LG+ + +L PT + G + F DLGG
Sbjct: 34 KSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT---SEELTIAGMTFTTF--DLGG 88
Query: 251 SEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRS 310
E R +WK YL ++ V+L+ C H + ++ + +
Sbjct: 89 HEQARRVWKNYLPAINGI-----------VFLVDCADHSRL-VESKVELNALMTDETISN 136
Query: 311 VPILVLG 317
VPIL+LG
Sbjct: 137 VPILILG 143
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 9/72 (12%)
Query: 309 RSVPILVLGLDNAGKSSIIKRI----LGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGG 364
+S ++ LGLDNAGK++++ + LG+ + +L PT + G + F DLGG
Sbjct: 34 KSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT---SEELTIAGMTFTTF--DLGG 88
Query: 365 SEDFRTIWKQYL 376
E R +WK YL
Sbjct: 89 HEQARRVWKNYL 100
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Query: 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGN-KYEVFLYDLGGSED 367
R + +L+LGLDNAGK+SI+ R+ +++ VPTVG N ++Y N +EV +DLGG
Sbjct: 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQYKNISFEV--WDLGGQTG 78
Query: 368 FRTIWKQYLGTVSQTLLVSHS 388
R W+ Y + V S
Sbjct: 79 VRPYWRCYFSDTDAVIYVVDS 99
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 44/69 (63%), Gaps = 3/69 (4%)
Query: 195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGN-KYEVFLYDLGGSED 253
R + +L+LGLDNAGK+SI+ R+ +++ VPTVG N ++Y N +EV +DLGG
Sbjct: 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQYKNISFEV--WDLGGQTG 78
Query: 254 FRTIWKQYL 262
R W+ Y
Sbjct: 79 VRPYWRCYF 87
>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
pdb|2FA9|B Chain B, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
Length = 189
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 62/128 (48%), Gaps = 23/128 (17%)
Query: 195 RSVPILVLGLDNAGKSSIIKRI----LGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGG 250
++ ++ LGLDNAGK++++ + LG+ + +L PT + G + F DLGG
Sbjct: 15 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT---SEELTIAGMTFTTF--DLGG 69
Query: 251 SEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQ-VSGIPDELTSATHLPLVDFR 309
R +WK YL ++ V+L+ C H+ + +EL S +
Sbjct: 70 GIQARRVWKNYLPAINGI-----------VFLVDCADHERLLESKEELDSLMTDETI--A 116
Query: 310 SVPILVLG 317
+VPIL+LG
Sbjct: 117 NVPILILG 124
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 9/72 (12%)
Query: 309 RSVPILVLGLDNAGKSSIIKRI----LGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGG 364
++ ++ LGLDNAGK++++ + LG+ + +L PT + G + F DLGG
Sbjct: 15 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT---SEELTIAGMTFTTF--DLGG 69
Query: 365 SEDFRTIWKQYL 376
R +WK YL
Sbjct: 70 GIQARRVWKNYL 81
>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex
pdb|1F6B|B Chain B, Crystal Structure Of Sar1-Gdp Complex
Length = 198
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 62/128 (48%), Gaps = 23/128 (17%)
Query: 195 RSVPILVLGLDNAGKSSIIKRI----LGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGG 250
++ ++ LGLDNAGK++++ + LG+ + +L PT + G + F DLGG
Sbjct: 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT---SEELTIAGMTFTTF--DLGG 78
Query: 251 SEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQ-VSGIPDELTSATHLPLVDFR 309
R +WK YL ++ V+L+ C H+ + +EL S +
Sbjct: 79 HIQARRVWKNYLPAINGI-----------VFLVDCADHERLLESKEELDSLMTDETI--A 125
Query: 310 SVPILVLG 317
+VPIL+LG
Sbjct: 126 NVPILILG 133
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 9/72 (12%)
Query: 309 RSVPILVLGLDNAGKSSIIKRI----LGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGG 364
++ ++ LGLDNAGK++++ + LG+ + +L PT + G + F DLGG
Sbjct: 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT---SEELTIAGMTFTTF--DLGG 78
Query: 365 SEDFRTIWKQYL 376
R +WK YL
Sbjct: 79 HIQARRVWKNYL 90
>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
pdb|2FMX|B Chain B, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
Length = 195
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 62/128 (48%), Gaps = 23/128 (17%)
Query: 195 RSVPILVLGLDNAGKSSIIKRI----LGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGG 250
++ ++ LGLDNAGK++++ + LG+ + +L PT + G + F DLGG
Sbjct: 21 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT---SEELTIAGMTFTTF--DLGG 75
Query: 251 SEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQ-VSGIPDELTSATHLPLVDFR 309
R +WK YL ++ V+L+ C H+ + +EL S +
Sbjct: 76 HIQARRVWKNYLPAINGI-----------VFLVDCADHERLLESKEELDSLMTDETI--A 122
Query: 310 SVPILVLG 317
+VPIL+LG
Sbjct: 123 NVPILILG 130
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 9/72 (12%)
Query: 309 RSVPILVLGLDNAGKSSIIKRI----LGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGG 364
++ ++ LGLDNAGK++++ + LG+ + +L PT + G + F DLGG
Sbjct: 21 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT---SEELTIAGMTFTTF--DLGG 75
Query: 365 SEDFRTIWKQYL 376
R +WK YL
Sbjct: 76 HIQARRVWKNYL 87
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 308 FRSVPILVLGLDNAGKSSIIKRILGEPII-SLVPTVG--FNRARVEYGNKYEVFL-YDLG 363
R + + +LG GKSSI+ R + + ++ PT+G F V+Y N+ FL +D
Sbjct: 3 LRELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTA 62
Query: 364 GSEDFRTIWKQYLGTVSQTLLV 385
G E FR + Y + ++V
Sbjct: 63 GQERFRALAPMYYRGSAAAIIV 84
Score = 35.8 bits (81), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 194 FRSVPILVLGLDNAGKSSIIKRILGEPII-SLVPTVG--FNRARVEYGNKYEVFL-YDLG 249
R + + +LG GKSSI+ R + + ++ PT+G F V+Y N+ FL +D
Sbjct: 3 LRELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTA 62
Query: 250 GSEDFRTIWKQY 261
G E FR + Y
Sbjct: 63 GQERFRALAPMY 74
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 35.0 bits (79), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 310 SVPILVLGLDNAGKSSIIKRILGE---PIISLVPTVGFNRARVEY-GNKYEVFLYDLGGS 365
++ IL++G GKSS++ R + P ++ V F + GNK ++ ++D G
Sbjct: 15 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQ 74
Query: 366 EDFRTIWKQYLGTVSQTLLV 385
E FRT+ Y +LV
Sbjct: 75 ERFRTLTPSYYRGAQGVILV 94
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 196 SVPILVLGLDNAGKSSIIKRILGE---PIISLVPTVGFNRARVEY-GNKYEVFLYDLGGS 251
++ IL++G GKSS++ R + P ++ V F + GNK ++ ++D G
Sbjct: 15 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQ 74
Query: 252 EDFRTIWKQY 261
E FRT+ Y
Sbjct: 75 ERFRTLTPSY 84
>pdb|3BB1|A Chain A, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|B Chain B, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|C Chain C, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|D Chain D, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|E Chain E, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|F Chain F, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|G Chain G, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|H Chain H, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
Length = 274
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 193 DFRSVPILVLGLDNAGKSSIIKRILGEPIISLVP 226
D S+ ILV+G GKSS + I+GE ++S+ P
Sbjct: 36 DVNSLTILVMGKGGVGKSSTVNSIIGERVVSISP 69
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 307 DFRSVPILVLGLDNAGKSSIIKRILGEPIISLVP 340
D S+ ILV+G GKSS + I+GE ++S+ P
Sbjct: 36 DVNSLTILVMGKGGVGKSSTVNSIIGERVVSISP 69
>pdb|3DEF|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana,
Dimerization Deficient Mutant R130a
Length = 262
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 171 PAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVP 226
PA T E ++ L D S+ +LVLG GKSS + ++GE ++ + P
Sbjct: 15 PAATQEKLIEFF----GKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSP 66
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 307 DFRSVPILVLGLDNAGKSSIIKRILGEPIISLVP 340
D S+ +LVLG GKSS + ++GE ++ + P
Sbjct: 33 DMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSP 66
>pdb|3BB3|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Gdp And Mg2+
Length = 262
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 171 PAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVP 226
PA T E ++ L D S+ +LVLG GKSS + ++GE ++ + P
Sbjct: 15 PAATQEKLIEFF----GKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSP 66
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 307 DFRSVPILVLGLDNAGKSSIIKRILGEPIISLVP 340
D S+ +LVLG GKSS + ++GE ++ + P
Sbjct: 33 DMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSP 66
>pdb|3BB4|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Mg2+ And Gmppnp
Length = 262
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 171 PAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVP 226
PA T E ++ L D S+ +LVLG GKSS + ++GE ++ + P
Sbjct: 15 PAATQEKLIEFF----GKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSP 66
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 307 DFRSVPILVLGLDNAGKSSIIKRILGEPIISLVP 340
D S+ +LVLG GKSS + ++GE ++ + P
Sbjct: 33 DMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSP 66
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 308 FRSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEYGNKYEVFL-YDLG 363
R + + +LG GKSSI+ R + + ++ PT+G F V GN+ FL +D
Sbjct: 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTA 80
Query: 364 GSEDFRTIWKQYLGTVSQTLLV 385
G E F ++ Y + ++V
Sbjct: 81 GQERFHSLAPMYYRGSAAAVIV 102
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 194 FRSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEYGNKYEVFL-YDLG 249
R + + +LG GKSSI+ R + + ++ PT+G F V GN+ FL +D
Sbjct: 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTA 80
Query: 250 GSEDFRTIWKQY 261
G E F ++ Y
Sbjct: 81 GQERFHSLAPMY 92
>pdb|2J3E|A Chain A, Dimerization Is Important For The Gtpase Activity Of
Chloroplast Translocon Components Attoc33 And Pstoc159
Length = 249
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 171 PAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVP 226
PA T E ++ L D S+ +LVLG GKSS + ++GE ++ + P
Sbjct: 14 PAATQEKLIEFF----GKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSP 65
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 307 DFRSVPILVLGLDNAGKSSIIKRILGEPIISLVP 340
D S+ +LVLG GKSS + ++GE ++ + P
Sbjct: 32 DMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSP 65
>pdb|1GKY|A Chain A, Refined Structure Of The Complex Between Guanylate Kinase
And Its Substrate Gmp At 2.0 Angstroms Resolution
Length = 187
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 14/113 (12%)
Query: 196 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFR 255
S PI++ G GKS+++K++ E S +V + R + Y+ ++F+
Sbjct: 2 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVS-STTRTPRAGEVNGKDYNFVSVDEFK 60
Query: 256 TI--------WKQYLG-----TVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPD 295
++ W Q+ G TV+ +TC + + M GV V IP+
Sbjct: 61 SMIKNNEFIEWAQFSGNYYGSTVASVKQVSKSGKTCILDIDMQGVKSVKAIPE 113
>pdb|1EX6|A Chain A, Crystal Structure Of Unliganded Form Of Guanylate Kinase
From Yeast
pdb|1EX6|B Chain B, Crystal Structure Of Unliganded Form Of Guanylate Kinase
From Yeast
pdb|1EX7|A Chain A, Crystal Structure Of Yeast Guanylate Kinase In Complex
With Guanosine-5'-Monophosphate
Length = 186
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 14/113 (12%)
Query: 196 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFR 255
S PI++ G GKS+++K++ E S +V + R + Y+ ++F+
Sbjct: 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVS-STTRTPRAGEVNGKDYNFVSVDEFK 59
Query: 256 TI--------WKQYLG-----TVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPD 295
++ W Q+ G TV+ +TC + + M GV V IP+
Sbjct: 60 SMIKNNEFIEWAQFSGNYYGSTVASVKQVSKSGKTCILDIDMQGVKSVKAIPE 112
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 32.3 bits (72), Expect = 0.70, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 313 ILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEY-GNKYEVFLYDLGGSEDF 368
IL++G GKS ++ R + + S + T+G F V+ G K ++ L+D G E F
Sbjct: 6 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERF 65
Query: 369 RTIWKQYLGTVSQTLLV 385
RTI Y +LV
Sbjct: 66 RTITTAYYRGAXGIILV 82
Score = 32.0 bits (71), Expect = 0.94, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 199 ILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEY-GNKYEVFLYDLGGSEDF 254
IL++G GKS ++ R + + S + T+G F V+ G K ++ L+D G E F
Sbjct: 6 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERF 65
Query: 255 RTIWKQY 261
RTI Y
Sbjct: 66 RTITTAY 72
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 198 PILVLGLDNAGKSSIIKRILGEPII-SLVPTVG--FNRARVEY-GNKYEVFLYDLGGSED 253
+L++G GKSS++ R S + T+G F VE G K ++ ++D G E
Sbjct: 11 KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQER 70
Query: 254 FRTIWKQY 261
FRTI Y
Sbjct: 71 FRTITSTY 78
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 312 PILVLGLDNAGKSSIIKRILGEPII-SLVPTVG--FNRARVEY-GNKYEVFLYDLGGSED 367
+L++G GKSS++ R S + T+G F VE G K ++ ++D G E
Sbjct: 11 KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQER 70
Query: 368 FRTIWKQY 375
FRTI Y
Sbjct: 71 FRTITSTY 78
>pdb|1M1J|C Chain C, Crystal Structure Of Native Chicken Fibrinogen With Two
Different Bound Ligands
pdb|1M1J|F Chain F, Crystal Structure Of Native Chicken Fibrinogen With Two
Different Bound Ligands
Length = 409
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 17/68 (25%)
Query: 351 YGNKYEVFLYDLGGSEDFRTIWKQY---LGTVSQTLLVSHSLSGRPDDRCQVYLMSCNCQ 407
YGN + V L GSEDFR W QY G +S PDD + +L N +
Sbjct: 187 YGNGWTVLQRRLDGSEDFRRNWVQYKEGFGHLS------------PDDTTEFWLG--NEK 232
Query: 408 VYLISAKN 415
++LI+ ++
Sbjct: 233 IHLITTQS 240
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 15/25 (60%)
Query: 237 YGNKYEVFLYDLGGSEDFRTIWKQY 261
YGN + V L GSEDFR W QY
Sbjct: 187 YGNGWTVLQRRLDGSEDFRRNWVQY 211
>pdb|1EI3|C Chain C, Crystal Structure Of Native Chicken Fibrinogen
pdb|1EI3|F Chain F, Crystal Structure Of Native Chicken Fibrinogen
Length = 409
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 17/68 (25%)
Query: 351 YGNKYEVFLYDLGGSEDFRTIWKQY---LGTVSQTLLVSHSLSGRPDDRCQVYLMSCNCQ 407
YGN + V L GSEDFR W QY G +S PDD + +L N +
Sbjct: 187 YGNGWTVLQRRLDGSEDFRRNWVQYKEGFGHLS------------PDDTTEFWLG--NEK 232
Query: 408 VYLISAKN 415
++LI+ ++
Sbjct: 233 IHLITTQS 240
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 15/25 (60%)
Query: 237 YGNKYEVFLYDLGGSEDFRTIWKQY 261
YGN + V L GSEDFR W QY
Sbjct: 187 YGNGWTVLQRRLDGSEDFRRNWVQY 211
>pdb|1H65|A Chain A, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|B Chain B, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|C Chain C, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
Length = 270
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 193 DFRSVPILVLGLDNAGKSSIIKRILGEPIISLVP 226
D S+ ILV G GKSS + I+GE ++S+ P
Sbjct: 36 DVNSLTILVXGKGGVGKSSTVNSIIGERVVSISP 69
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 307 DFRSVPILVLGLDNAGKSSIIKRILGEPIISLVP 340
D S+ ILV G GKSS + I+GE ++S+ P
Sbjct: 36 DVNSLTILVXGKGGVGKSSTVNSIIGERVVSISP 69
>pdb|4F4J|A Chain A, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
pdb|4F4J|B Chain B, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
Length = 202
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 49/117 (41%), Gaps = 22/117 (18%)
Query: 196 SVPILVLGLDNAGKSSIIKRILGEPIISL---VP-TVGFNRARVEYGNKYEVFLYDLGGS 251
S PI++ G GKS+++K++ E S VP T RA G Y D
Sbjct: 17 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVPSTTRTPRAGEVNGKDYNFVSVD---- 72
Query: 252 EDFRTI--------WKQYLG-----TVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPD 295
+F+++ W Q+ G TV+ +TC + + M GV V IP+
Sbjct: 73 -EFKSMIKNNEFIEWAQFSGNYYGSTVASVKQVSKSGKTCILDIDMQGVKSVKAIPE 128
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 32.0 bits (71), Expect = 0.91, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 313 ILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEY-GNKYEVFLYDLGGSEDF 368
IL++G GKS ++ R + + S + T+G F V+ G K ++ L+D G E F
Sbjct: 10 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERF 69
Query: 369 RTIWKQYLGTVSQTLLV 385
RTI Y +LV
Sbjct: 70 RTITTAYYRGAMGIILV 86
Score = 32.0 bits (71), Expect = 0.92, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 199 ILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEY-GNKYEVFLYDLGGSEDF 254
IL++G GKS ++ R + + S + T+G F V+ G K ++ L+D G E F
Sbjct: 10 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERF 69
Query: 255 RTIWKQY 261
RTI Y
Sbjct: 70 RTITTAY 76
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 197 VPILVLGLDNAGKSSIIKRILGEPII-SLVPTVG--FNRARVEY-GNKYEVFLYDLGGSE 252
+ IL++G GKS ++ R + + S + T+G F V+ G K ++ L+D G E
Sbjct: 21 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 80
Query: 253 DFRTIWKQY 261
FRTI Y
Sbjct: 81 RFRTITTAY 89
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 311 VPILVLGLDNAGKSSIIKRILGEPII-SLVPTVG--FNRARVEY-GNKYEVFLYDLGGSE 366
+ IL++G GKS ++ R + + S + T+G F V+ G K ++ L+D G E
Sbjct: 21 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 80
Query: 367 DFRTIWKQY 375
FRTI Y
Sbjct: 81 RFRTITTAY 89
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 31.2 bits (69), Expect = 1.4, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 313 ILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEY-GNKYEVFLYDLGGSEDF 368
IL++G GKS ++ R + + S + T+G F V+ G K ++ ++D G E F
Sbjct: 6 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERF 65
Query: 369 RTIWKQYLGTVSQTLLV 385
RTI Y +LV
Sbjct: 66 RTITTAYYRGAXGIILV 82
Score = 30.8 bits (68), Expect = 1.8, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 199 ILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEY-GNKYEVFLYDLGGSEDF 254
IL++G GKS ++ R + + S + T+G F V+ G K ++ ++D G E F
Sbjct: 6 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERF 65
Query: 255 RTIWKQY 261
RTI Y
Sbjct: 66 RTITTAY 72
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 302 HLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPII-SLVPTVG--FNRARVEY-GNKYEV 357
H+P D+ +L++G GKS ++ R + S + T+G F +E G ++
Sbjct: 2 HMPEYDYL-FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKL 60
Query: 358 FLYDLGGSEDFRTIWKQY 375
++D G E FRTI Y
Sbjct: 61 QIWDTAGQERFRTITSSY 78
Score = 29.3 bits (64), Expect = 5.4, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPII-SLVPTVG--FNRARVEY-GNKYEV 243
H+ +D+ +L++G GKS ++ R + S + T+G F +E G ++
Sbjct: 2 HMPEYDYL-FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKL 60
Query: 244 FLYDLGGSEDFRTIWKQY 261
++D G E FRTI Y
Sbjct: 61 QIWDTAGQERFRTITSSY 78
>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Sulfate Ion And Gdp
pdb|4DCT|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Half-Occupacy Gdp
pdb|4DCU|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With Gdp
pdb|4DCV|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gmppcp
Length = 456
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 68/322 (21%), Positives = 122/322 (37%), Gaps = 86/322 (26%)
Query: 199 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARV----EYGNKYEVFLYDLG----G 250
+ ++G N GKS+I RI GE I + T G R R+ E+ N Y+ L D G G
Sbjct: 26 VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN-YDFNLIDTGGIDIG 84
Query: 251 SEDF-RTIWKQYLGTVSQTPL------GR-----PDSRTCQVYL-----IMCGVHQVS-- 291
E F I +Q + + + GR D ++ ++ V+++
Sbjct: 85 DEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNT 144
Query: 292 --------------GIPDELTSATHLPLVD--------FRSVP----------ILVLGLD 319
G P ++ L L D F+++P ++G
Sbjct: 145 EMRANIYDFYSLGFGEPYPISGTHGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRP 204
Query: 320 NAGKSSIIKRILGEPIISLVPTVGFNRARVEYG---NKYEVFLYDLGGSEDFRTIWK--- 373
N GKSS++ +LGE + + G R V+ N+ E + D G +++
Sbjct: 205 NVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTE 264
Query: 374 -----QYLGTVSQTLLVSHSLSGRP-----DDRCQVYLMSCNCQVYLISAKNLSNGFKKS 423
+ L + ++ +V+ L G D R Y V ++ N +
Sbjct: 265 KYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIV-----VNKWDAV 319
Query: 424 ERDETNISNFQIKNSSENLQDN 445
++DE+ + F+ EN++D+
Sbjct: 320 DKDESTMKEFE-----ENIRDH 336
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 302 HLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPII-SLVPTVG--FNRARVEY-GNKYEV 357
H+P D+ +L++G GKS ++ R + S + T+G F +E G ++
Sbjct: 2 HMPEYDYL-FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKL 60
Query: 358 FLYDLGGSEDFRTIWKQY 375
++D G E FRTI Y
Sbjct: 61 QIWDTAGQERFRTITSSY 78
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPII-SLVPTVG--FNRARVEY-GNKYEV 243
H+ +D+ +L++G GKS ++ R + S + T+G F +E G ++
Sbjct: 2 HMPEYDYL-FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKL 60
Query: 244 FLYDLGGSEDFRTIWKQY 261
++D G E FRTI Y
Sbjct: 61 QIWDTAGQERFRTITSSY 78
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 30.8 bits (68), Expect = 1.8, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 313 ILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEY-GNKYEVFLYDLGGSEDF 368
IL++G GKS ++ R + + S + T+G F V+ G K ++ ++D G E F
Sbjct: 6 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERF 65
Query: 369 RTIWKQYLGTVSQTLLV 385
RTI Y +LV
Sbjct: 66 RTITTAYYRGAMGIILV 82
Score = 30.8 bits (68), Expect = 1.8, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 199 ILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEY-GNKYEVFLYDLGGSEDF 254
IL++G GKS ++ R + + S + T+G F V+ G K ++ ++D G E F
Sbjct: 6 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERF 65
Query: 255 RTIWKQY 261
RTI Y
Sbjct: 66 RTITTAY 72
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 312 PILVLGLDNAGKSSIIKRI---LGEPIISLVPTVGFNRARVEY-GNKYEVFLYDLGGSED 367
I+++G GK+ +++R L P V F VE G K ++ ++D G E
Sbjct: 28 KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQER 87
Query: 368 FRTIWKQYLGTVSQTLLVSHSLSGRPDDRC 397
FR+I + Y + + L++++ ++ RC
Sbjct: 88 FRSITQSYYRS-ANALILTYDITCEESFRC 116
>pdb|2OGK|A Chain A, Crystal Structure Of Protein Af2318 From Archaeglobus
Fulgidus, Pfam Duf54
pdb|2OGK|B Chain B, Crystal Structure Of Protein Af2318 From Archaeglobus
Fulgidus, Pfam Duf54
pdb|2OGK|C Chain C, Crystal Structure Of Protein Af2318 From Archaeglobus
Fulgidus, Pfam Duf54
pdb|2OGK|D Chain D, Crystal Structure Of Protein Af2318 From Archaeglobus
Fulgidus, Pfam Duf54
Length = 146
Score = 30.4 bits (67), Expect = 2.7, Method: Composition-based stats.
Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 8/95 (8%)
Query: 331 LGEPIISLVP---TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWK---QYLGTVSQTLL 384
+GE I +L P + ++A+ YGN E +L S + + WK + LG ++ +L
Sbjct: 24 VGEAISTLFPFEFEIAVSKAKGHYGNPMEYLEVELTKSSEIKKFWKNLLELLGEQAEEIL 83
Query: 385 VSHSLSGRPDDRCQVYLMSCNCQVYLISAKNLSNG 419
+L R D++ +++ + YL S G
Sbjct: 84 --STLEDRIDEQNVLHIRIDKQKAYLGEVSLTSGG 116
Score = 29.6 bits (65), Expect = 4.2, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 217 LGEPIISLVP---TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYL 262
+GE I +L P + ++A+ YGN E +L S + + WK L
Sbjct: 24 VGEAISTLFPFEFEIAVSKAKGHYGNPMEYLEVELTKSSEIKKFWKNLL 72
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 30.0 bits (66), Expect = 3.0, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Query: 310 SVPILVLGLDNAGKSSIIKRILGEPII-SLVPTVG--FNRARV---EYGNKYEVFLYDLG 363
S+ +++LG GKSSI+ R + + PT+G F RV E+ K+E+ +D
Sbjct: 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEI--WDTA 60
Query: 364 GSEDFRTIWKQYLGTVSQTLLV 385
G E F ++ Y L+V
Sbjct: 61 GQERFASLAPXYYRNAQAALVV 82
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 306 VDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVP-TVG--FNRARVEY-GNKYEVFLYD 361
DF+ + ++++G GK+S+++R + TVG F VE G K + ++D
Sbjct: 23 ADFK-LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWD 81
Query: 362 LGGSEDFRTIWKQYLGTVSQTLLV 385
G E F +I Y + +LV
Sbjct: 82 TAGQERFNSITSAYYRSAKGIILV 105
>pdb|3V00|C Chain C, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|B Chain B, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|A Chain A, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation
Length = 356
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 193 DFRSVPILVLGLDNAGKSSIIK--RILGEPIISLVPTVGFNRARVEYGNKYEVFL 245
D R+V +L+LG +GKS+I+K +I+ + SL + F + YGN + L
Sbjct: 32 DARTVKLLLLGAGESGKSTIVKQMKIIHQDPYSLEECLEF--IAIIYGNTLQSIL 84
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 307 DFRSVPILVLGLDNAGKSSIIK--RILGEPIISLVPTVGFNRARVEYGNKYEVFL 359
D R+V +L+LG +GKS+I+K +I+ + SL + F + YGN + L
Sbjct: 32 DARTVKLLLLGAGESGKSTIVKQMKIIHQDPYSLEECLEF--IAIIYGNTLQSIL 84
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 7/103 (6%)
Query: 306 VDFRSVP--ILVLGLDNAGKSSIIKRILGEPIIS--LVPTVGF---NRARVEYGNKYEVF 358
VDF V ++++G GK+ ++ R ++ + TVG N+ G K ++
Sbjct: 4 VDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQ 63
Query: 359 LYDLGGSEDFRTIWKQYLGTVSQTLLVSHSLSGRPDDRCQVYL 401
++D G E FR++ Y LL+ + D Q +L
Sbjct: 64 MWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWL 106
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 8/78 (10%)
Query: 314 LVLGLDNAGKSSII-----KRILGEPIISLVPTVGFNRARVEY-GNKYEVFLYDLGGSED 367
+++G GKS ++ KR +P+ L V F V G + ++ ++D G E
Sbjct: 25 IIIGDTGVGKSCLLLQFTDKRF--QPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES 82
Query: 368 FRTIWKQYLGTVSQTLLV 385
FR+I + Y + LLV
Sbjct: 83 FRSITRSYYRGAAGALLV 100
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,667,244
Number of Sequences: 62578
Number of extensions: 639833
Number of successful extensions: 1813
Number of sequences better than 100.0: 106
Number of HSP's better than 100.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 1540
Number of HSP's gapped (non-prelim): 213
length of query: 537
length of database: 14,973,337
effective HSP length: 103
effective length of query: 434
effective length of database: 8,527,803
effective search space: 3701066502
effective search space used: 3701066502
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)