Query psy16304
Match_columns 537
No_of_seqs 479 out of 2860
Neff 7.2
Searched_HMMs 46136
Date Fri Aug 16 17:56:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16304.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16304hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1126 GlnQ ABC-type polar am 99.9 1.7E-28 3.7E-33 232.8 3.0 210 152-416 2-223 (240)
2 COG1135 AbcC ABC-type metal io 99.9 1.9E-27 4.2E-32 236.2 4.8 218 152-416 1-229 (339)
3 COG0488 Uup ATPase components 99.9 1.3E-27 2.9E-32 259.7 1.6 228 151-415 2-236 (530)
4 COG1127 Ttg2A ABC-type transpo 99.9 7.1E-27 1.5E-31 225.0 3.0 218 150-418 6-235 (263)
5 COG1125 OpuBA ABC-type proline 99.9 5.4E-26 1.2E-30 220.0 3.3 212 152-418 1-225 (309)
6 COG3842 PotA ABC-type spermidi 99.9 7.7E-26 1.7E-30 233.0 3.0 209 151-416 4-224 (352)
7 COG1136 SalX ABC-type antimicr 99.9 9.8E-26 2.1E-30 219.0 3.2 207 154-406 3-219 (226)
8 COG1131 CcmA ABC-type multidru 99.9 6.5E-25 1.4E-29 224.2 4.3 208 152-419 4-227 (293)
9 COG2884 FtsE Predicted ATPase 99.9 1.5E-24 3.2E-29 201.9 5.1 209 152-412 1-220 (223)
10 COG1120 FepC ABC-type cobalami 99.9 9.1E-25 2E-29 216.2 3.4 212 153-416 3-226 (258)
11 COG1118 CysA ABC-type sulfate/ 99.9 1.4E-24 3E-29 215.4 3.9 211 152-416 2-225 (345)
12 KOG0058|consensus 99.9 1.6E-24 3.5E-29 235.7 3.4 261 96-418 418-691 (716)
13 COG1116 TauB ABC-type nitrate/ 99.9 1.4E-24 3.1E-29 211.4 1.3 194 152-405 3-207 (248)
14 COG1124 DppF ABC-type dipeptid 99.9 4.2E-24 9.1E-29 206.6 3.4 219 151-419 2-232 (252)
15 COG3839 MalK ABC-type sugar tr 99.9 3.8E-24 8.2E-29 219.4 3.1 209 152-417 3-222 (338)
16 PRK10636 putative ABC transpor 99.9 1.7E-24 3.7E-29 243.1 0.1 225 153-415 2-232 (638)
17 COG4555 NatA ABC-type Na+ tran 99.9 2.6E-24 5.7E-29 201.8 -0.1 220 152-429 1-233 (245)
18 PRK13537 nodulation ABC transp 99.9 8.6E-24 1.9E-28 217.4 1.7 209 150-418 5-227 (306)
19 COG4175 ProV ABC-type proline/ 99.9 2E-23 4.3E-28 207.6 3.7 202 184-418 42-254 (386)
20 COG0411 LivG ABC-type branched 99.9 2.6E-24 5.7E-29 208.1 -2.5 222 151-417 3-238 (250)
21 COG3638 ABC-type phosphate/pho 99.9 8.3E-24 1.8E-28 203.3 0.6 224 151-417 2-236 (258)
22 COG2274 SunT ABC-type bacterio 99.9 1.1E-23 2.3E-28 236.3 0.9 273 87-419 413-697 (709)
23 COG4152 ABC-type uncharacteriz 99.9 4.6E-23 1E-27 198.5 4.4 210 152-425 2-226 (300)
24 PRK13536 nodulation factor exp 99.9 2.7E-23 5.9E-28 216.4 2.7 209 150-418 39-261 (340)
25 COG4988 CydD ABC-type transpor 99.9 3.8E-23 8.2E-28 221.1 3.9 265 94-417 269-542 (559)
26 COG1121 ZnuC ABC-type Mn/Zn tr 99.9 6.2E-23 1.3E-27 202.3 4.0 212 151-416 3-225 (254)
27 TIGR02314 ABC_MetN D-methionin 99.9 2E-23 4.3E-28 217.4 -0.1 216 153-417 2-229 (343)
28 COG4586 ABC-type uncharacteriz 99.9 7.1E-23 1.5E-27 200.1 2.5 234 152-422 3-250 (325)
29 PRK11432 fbpC ferric transport 99.9 3.5E-23 7.6E-28 216.4 0.3 211 150-417 4-225 (351)
30 COG4181 Predicted ABC-type tra 99.9 9.8E-23 2.1E-27 186.7 2.2 192 185-409 25-226 (228)
31 COG1122 CbiO ABC-type cobalt t 99.9 1.9E-22 4.2E-27 198.8 4.0 196 188-416 22-226 (235)
32 PRK11650 ugpC glycerol-3-phosp 99.9 9.7E-23 2.1E-27 213.5 1.8 190 188-417 22-223 (356)
33 cd03261 ABC_Org_Solvent_Resist 99.9 9.7E-23 2.1E-27 201.6 1.3 196 187-416 17-224 (235)
34 COG1137 YhbG ABC-type (unclass 99.9 1.2E-23 2.6E-28 197.2 -4.8 210 152-416 4-226 (243)
35 COG1132 MdlB ABC-type multidru 99.9 1.2E-22 2.6E-27 225.8 2.0 261 94-419 280-553 (567)
36 TIGR03265 PhnT2 putative 2-ami 99.9 8.9E-23 1.9E-27 213.6 0.9 209 152-417 4-223 (353)
37 TIGR03797 NHPM_micro_ABC2 NHPM 99.9 1.2E-22 2.6E-27 230.6 2.0 262 92-417 401-672 (686)
38 PRK11174 cysteine/glutathione 99.8 1.5E-22 3.2E-27 226.0 2.0 261 95-417 300-571 (588)
39 TIGR01288 nodI ATP-binding ABC 99.8 2E-22 4.4E-27 207.1 2.1 209 151-417 3-223 (303)
40 PRK10851 sulfate/thiosulfate t 99.8 1.6E-22 3.6E-27 211.6 1.4 208 153-417 3-225 (353)
41 TIGR03796 NHPM_micro_ABC1 NHPM 99.8 1.7E-22 3.7E-27 230.2 1.6 269 93-418 420-700 (710)
42 TIGR01188 drrA daunorubicin re 99.8 5.5E-22 1.2E-26 203.7 4.5 193 186-418 9-213 (302)
43 PRK11153 metN DL-methionine tr 99.8 1E-22 2.3E-27 212.5 -1.0 196 187-417 22-229 (343)
44 PRK09452 potA putrescine/sperm 99.8 2.5E-22 5.3E-27 211.6 1.4 208 152-417 14-233 (375)
45 TIGR01186 proV glycine betaine 99.8 3E-22 6.6E-27 209.8 2.0 199 186-418 9-219 (363)
46 TIGR03258 PhnT 2-aminoethylpho 99.8 3.4E-22 7.4E-27 209.7 1.9 191 187-417 22-227 (362)
47 TIGR01257 rim_protein retinal- 99.8 2.2E-22 4.7E-27 244.1 -0.1 299 186-523 946-1281(2272)
48 TIGR01193 bacteriocin_ABC ABC- 99.8 3.4E-22 7.3E-27 227.7 1.4 270 88-418 416-697 (708)
49 PRK11629 lolD lipoprotein tran 99.8 3.2E-22 7E-27 197.7 1.0 213 151-411 4-227 (233)
50 TIGR02315 ABC_phnC phosphonate 99.8 4.9E-22 1.1E-26 197.4 2.1 203 188-416 20-233 (243)
51 PRK11607 potG putrescine trans 99.8 4.5E-22 9.8E-27 209.8 1.7 209 151-417 18-238 (377)
52 cd03265 ABC_DrrA DrrA is the A 99.8 4.4E-22 9.5E-27 195.0 1.4 190 188-415 18-218 (220)
53 PRK11000 maltose/maltodextrin 99.8 4E-22 8.7E-27 210.0 1.2 208 152-417 3-222 (369)
54 PRK09536 btuD corrinoid ABC tr 99.8 4E-22 8.7E-27 211.4 1.2 213 152-416 3-226 (402)
55 PRK11831 putative ABC transpor 99.8 3.5E-22 7.5E-27 201.9 0.6 213 152-416 7-231 (269)
56 COG0410 LivF ABC-type branched 99.8 8.1E-22 1.8E-26 189.5 3.1 213 152-417 3-225 (237)
57 cd03258 ABC_MetN_methionine_tr 99.8 4E-22 8.7E-27 196.9 0.9 195 187-416 22-228 (233)
58 PRK10070 glycine betaine trans 99.8 3.8E-22 8.2E-27 211.4 0.7 199 185-417 43-253 (400)
59 TIGR03522 GldA_ABC_ATP gliding 99.8 4.8E-22 1E-26 204.1 1.4 190 187-418 19-221 (301)
60 TIGR00958 3a01208 Conjugate Tr 99.8 5.3E-22 1.2E-26 225.9 1.7 264 93-418 428-702 (711)
61 PRK11176 lipid transporter ATP 99.8 7.1E-22 1.5E-26 220.2 2.5 267 89-417 288-566 (582)
62 PRK15079 oligopeptide ABC tran 99.8 3E-22 6.4E-27 208.0 -0.7 229 151-417 7-250 (331)
63 cd03260 ABC_PstB_phosphate_tra 99.8 6E-22 1.3E-26 194.8 1.3 191 188-415 18-226 (227)
64 PRK11308 dppF dipeptide transp 99.8 4.8E-22 1E-26 206.2 -0.1 226 151-417 4-243 (327)
65 TIGR03375 type_I_sec_LssB type 99.8 9.3E-22 2E-26 223.6 2.2 266 93-418 412-688 (694)
66 TIGR02211 LolD_lipo_ex lipopro 99.8 9.5E-22 2.1E-26 192.6 1.8 189 187-408 22-220 (221)
67 cd03256 ABC_PhnC_transporter A 99.8 9.2E-22 2E-26 195.1 1.7 205 188-416 19-232 (241)
68 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.8 9.8E-22 2.1E-26 192.1 1.7 186 187-406 21-217 (218)
69 KOG0059|consensus 99.8 5.9E-22 1.3E-26 229.4 -0.1 291 185-527 580-883 (885)
70 cd03219 ABC_Mj1267_LivG_branch 99.8 1.2E-21 2.6E-26 193.7 1.8 204 188-416 18-230 (236)
71 PRK11160 cysteine/glutathione 99.8 1.2E-21 2.6E-26 218.0 1.9 262 96-417 291-561 (574)
72 PRK11247 ssuB aliphatic sulfon 99.8 1.5E-21 3.2E-26 196.0 2.3 199 151-414 11-219 (257)
73 TIGR03864 PQQ_ABC_ATP ABC tran 99.8 1.7E-21 3.8E-26 192.8 2.7 191 188-417 19-220 (236)
74 cd03259 ABC_Carb_Solutes_like 99.8 1.1E-21 2.3E-26 191.2 1.1 185 187-410 17-212 (213)
75 cd03294 ABC_Pro_Gly_Bertaine T 99.8 1.5E-21 3.3E-26 197.3 2.2 196 187-416 41-248 (269)
76 PRK11701 phnK phosphonate C-P 99.8 9E-22 1.9E-26 197.5 0.5 220 150-416 4-239 (258)
77 KOG0057|consensus 99.8 8.1E-22 1.7E-26 208.3 0.2 270 85-418 293-574 (591)
78 PRK10790 putative multidrug tr 99.8 1.5E-21 3.2E-26 218.2 2.0 260 94-417 293-562 (592)
79 TIGR01257 rim_protein retinal- 99.8 9.4E-22 2E-26 238.6 0.3 196 185-422 1954-2163(2272)
80 COG3840 ThiQ ABC-type thiamine 99.8 2.6E-21 5.6E-26 179.1 3.1 187 190-417 19-218 (231)
81 cd03296 ABC_CysA_sulfate_impor 99.8 1.4E-21 3E-26 193.9 1.2 194 188-416 20-224 (239)
82 KOG0055|consensus 99.8 1.6E-21 3.5E-26 223.2 1.3 262 99-419 304-577 (1228)
83 cd03257 ABC_NikE_OppD_transpor 99.8 2.5E-21 5.4E-26 190.3 2.3 191 187-410 22-227 (228)
84 PRK11147 ABC transporter ATPas 99.8 5E-21 1.1E-25 215.3 4.7 217 152-414 3-238 (635)
85 PRK11022 dppD dipeptide transp 99.8 1.9E-21 4.1E-26 201.7 0.9 220 152-417 3-242 (326)
86 PRK15093 antimicrobial peptide 99.8 1.4E-21 3E-26 203.2 -0.2 224 152-417 3-247 (330)
87 cd03218 ABC_YhbG The ABC trans 99.8 2.8E-21 6.1E-26 190.6 2.0 193 187-416 17-220 (232)
88 PRK11264 putative amino-acid A 99.8 3.1E-21 6.8E-26 192.5 2.4 216 152-416 3-231 (250)
89 TIGR03415 ABC_choXWV_ATP choli 99.8 2.9E-21 6.3E-26 203.4 2.0 200 185-417 39-253 (382)
90 KOG0056|consensus 99.8 1.5E-21 3.2E-26 202.6 -0.2 260 96-418 489-761 (790)
91 PRK13638 cbiO cobalt transport 99.8 3.1E-21 6.6E-26 195.2 2.0 193 188-416 19-223 (271)
92 cd03266 ABC_NatA_sodium_export 99.8 2.4E-21 5.2E-26 189.3 1.2 185 187-410 22-217 (218)
93 TIGR00960 3a0501s02 Type II (G 99.8 2E-21 4.3E-26 189.7 0.6 186 187-407 20-216 (216)
94 cd03224 ABC_TM1139_LivF_branch 99.8 2.5E-21 5.3E-26 189.7 1.2 192 187-415 17-218 (222)
95 PRK10908 cell division protein 99.8 2.1E-21 4.5E-26 190.4 0.6 186 188-409 20-217 (222)
96 cd03295 ABC_OpuCA_Osmoprotecti 99.8 2.6E-21 5.7E-26 192.3 1.1 192 188-416 19-223 (242)
97 PRK10619 histidine/lysine/argi 99.8 2.4E-21 5.1E-26 194.4 0.7 219 150-416 3-239 (257)
98 PRK14250 phosphate ABC transpo 99.8 3.1E-21 6.6E-26 191.8 1.4 190 188-416 21-219 (241)
99 PRK09473 oppD oligopeptide tra 99.8 2.4E-21 5.3E-26 201.1 0.8 221 151-417 11-250 (330)
100 PRK13548 hmuV hemin importer A 99.8 3.3E-21 7.1E-26 193.6 1.6 193 188-416 20-228 (258)
101 PRK11614 livF leucine/isoleuci 99.8 1.7E-21 3.7E-26 193.0 -0.5 211 151-416 4-224 (237)
102 TIGR02673 FtsE cell division A 99.8 2.6E-21 5.5E-26 188.6 0.6 184 188-406 20-214 (214)
103 TIGR02769 nickel_nikE nickel i 99.8 2.8E-21 6.1E-26 194.8 0.9 199 186-417 27-239 (265)
104 KOG0055|consensus 99.8 4.9E-21 1.1E-25 219.2 3.0 265 96-418 938-1213(1228)
105 COG4559 ABC-type hemin transpo 99.8 1E-20 2.2E-25 179.1 4.6 191 188-416 19-228 (259)
106 PRK13637 cbiO cobalt transport 99.8 3.9E-21 8.5E-26 196.0 1.8 196 186-416 23-232 (287)
107 PRK10895 lipopolysaccharide AB 99.8 3.7E-21 8E-26 191.0 1.6 210 152-416 3-224 (241)
108 cd03301 ABC_MalK_N The N-termi 99.8 3.1E-21 6.7E-26 187.9 0.9 185 187-410 17-212 (213)
109 PRK11300 livG leucine/isoleuci 99.8 2.6E-21 5.6E-26 193.6 0.3 224 150-416 3-241 (255)
110 PRK13635 cbiO cobalt transport 99.8 1.9E-21 4.2E-26 197.5 -0.7 214 150-416 3-227 (279)
111 PRK13652 cbiO cobalt transport 99.8 4.2E-21 9.1E-26 194.8 1.6 210 152-416 3-225 (277)
112 PRK11144 modC molybdate transp 99.8 7.7E-21 1.7E-25 199.2 3.6 193 188-417 16-217 (352)
113 cd03263 ABC_subfamily_A The AB 99.8 5.2E-21 1.1E-25 187.2 2.0 188 187-415 19-218 (220)
114 PRK10575 iron-hydroxamate tran 99.8 3.3E-21 7.2E-26 194.3 0.6 199 187-416 28-235 (265)
115 cd03269 ABC_putative_ATPase Th 99.8 4.9E-21 1.1E-25 186.2 1.6 181 187-410 17-209 (210)
116 COG1123 ATPase components of v 99.8 8.4E-21 1.8E-25 203.8 3.5 225 150-416 278-517 (539)
117 PRK13646 cbiO cobalt transport 99.8 5.3E-21 1.1E-25 195.0 1.7 197 187-416 24-233 (286)
118 TIGR02142 modC_ABC molybdenum 99.8 7.5E-21 1.6E-25 199.5 2.8 197 188-417 15-220 (354)
119 cd03293 ABC_NrtD_SsuB_transpor 99.8 3.2E-21 7E-26 188.9 0.0 183 187-412 21-217 (220)
120 PRK13643 cbiO cobalt transport 99.8 5.2E-21 1.1E-25 195.2 1.5 195 187-416 23-231 (288)
121 TIGR03410 urea_trans_UrtE urea 99.8 4.2E-21 9.1E-26 189.2 0.8 193 187-416 17-219 (230)
122 PRK09493 glnQ glutamine ABC tr 99.8 6.4E-21 1.4E-25 189.2 2.1 193 188-416 19-223 (240)
123 cd03226 ABC_cobalt_CbiO_domain 99.8 6.7E-21 1.5E-25 184.6 2.2 177 188-407 18-204 (205)
124 PRK10253 iron-enterobactin tra 99.8 5.8E-21 1.3E-25 192.5 1.7 216 151-416 6-231 (265)
125 PRK13636 cbiO cobalt transport 99.8 5.6E-21 1.2E-25 194.5 1.6 214 150-416 3-229 (283)
126 PRK10584 putative ABC transpor 99.8 7.4E-21 1.6E-25 187.2 2.2 210 152-409 6-226 (228)
127 TIGR03005 ectoine_ehuA ectoine 99.8 8.5E-21 1.9E-25 189.7 2.6 200 187-416 17-234 (252)
128 TIGR01842 type_I_sec_PrtD type 99.8 7.7E-21 1.7E-25 210.3 2.5 279 68-416 251-540 (544)
129 TIGR03411 urea_trans_UrtD urea 99.8 9.5E-21 2.1E-25 188.1 2.2 201 188-416 20-229 (242)
130 PRK13647 cbiO cobalt transport 99.8 5.8E-21 1.3E-25 193.5 0.5 210 152-416 4-225 (274)
131 TIGR02323 CP_lyasePhnK phospho 99.8 5.2E-21 1.1E-25 191.3 0.1 219 152-416 3-236 (253)
132 cd03268 ABC_BcrA_bacitracin_re 99.8 7.1E-21 1.5E-25 184.7 1.1 182 187-410 17-207 (208)
133 PRK09700 D-allose transporter 99.8 1.2E-20 2.7E-25 207.1 3.0 220 151-416 4-232 (510)
134 TIGR01846 type_I_sec_HlyB type 99.8 1.1E-20 2.4E-25 214.8 2.6 280 68-418 388-680 (694)
135 PRK13631 cbiO cobalt transport 99.8 9.1E-21 2E-25 196.1 1.6 223 150-416 19-263 (320)
136 cd03225 ABC_cobalt_CbiO_domain 99.8 7.9E-21 1.7E-25 184.7 1.1 182 187-406 18-211 (211)
137 PRK13651 cobalt transporter AT 99.8 9.6E-21 2.1E-25 194.7 1.7 219 153-416 3-252 (305)
138 PRK13648 cbiO cobalt transport 99.8 6.7E-21 1.5E-25 192.5 0.6 214 150-416 5-229 (269)
139 KOG0062|consensus 99.8 1.5E-20 3.2E-25 197.2 3.1 150 312-480 181-353 (582)
140 PRK13657 cyclic beta-1,2-gluca 99.8 9E-21 2E-25 211.7 1.5 281 67-417 265-557 (588)
141 PRK13640 cbiO cobalt transport 99.8 6E-21 1.3E-25 194.2 0.1 214 149-416 2-230 (282)
142 PRK11231 fecE iron-dicitrate t 99.8 8.8E-21 1.9E-25 190.1 1.1 195 188-416 20-225 (255)
143 PRK13549 xylose transporter AT 99.8 1.1E-20 2.3E-25 207.4 1.8 211 151-416 4-230 (506)
144 PRK13634 cbiO cobalt transport 99.8 8.6E-21 1.9E-25 193.8 1.0 197 187-416 24-233 (290)
145 PRK15112 antimicrobial peptide 99.8 9.2E-21 2E-25 191.3 1.1 220 151-416 3-237 (267)
146 COG1117 PstB ABC-type phosphat 99.8 2.5E-20 5.4E-25 176.7 3.9 215 150-416 5-235 (253)
147 PRK10762 D-ribose transporter 99.8 1.4E-20 3E-25 206.3 2.5 210 152-416 4-228 (501)
148 PRK11248 tauB taurine transpor 99.8 7.4E-21 1.6E-25 190.8 -0.1 183 188-413 19-215 (255)
149 COG4987 CydC ABC-type transpor 99.8 1.3E-20 2.9E-25 199.0 1.7 254 104-418 298-561 (573)
150 cd03264 ABC_drug_resistance_li 99.8 6.8E-21 1.5E-25 185.3 -0.5 183 187-410 17-210 (211)
151 PRK13650 cbiO cobalt transport 99.8 8.7E-21 1.9E-25 192.7 0.3 212 152-416 4-227 (279)
152 PRK11124 artP arginine transpo 99.8 1.3E-20 2.9E-25 187.2 1.5 197 188-416 20-228 (242)
153 cd03298 ABC_ThiQ_thiamine_tran 99.8 2.4E-20 5.1E-25 181.5 3.1 183 188-409 16-209 (211)
154 TIGR02203 MsbA_lipidA lipid A 99.8 1.2E-20 2.7E-25 209.7 1.3 280 68-417 264-555 (571)
155 PRK10247 putative ABC transpor 99.8 8.9E-21 1.9E-25 186.6 -0.0 197 152-403 7-211 (225)
156 PRK13641 cbiO cobalt transport 99.8 1.1E-20 2.5E-25 192.6 0.6 195 187-416 24-232 (287)
157 TIGR00972 3a0107s01c2 phosphat 99.8 1.6E-20 3.4E-25 187.3 1.5 191 188-416 19-230 (247)
158 PRK13632 cbiO cobalt transport 99.8 1.2E-20 2.6E-25 190.9 0.5 213 151-416 6-229 (271)
159 TIGR03873 F420-0_ABC_ATP propo 99.8 1.9E-20 4E-25 187.8 1.8 197 187-416 18-224 (256)
160 PRK13644 cbiO cobalt transport 99.8 1.1E-20 2.5E-25 191.4 0.2 194 187-416 19-222 (274)
161 TIGR01192 chvA glucan exporter 99.8 2E-20 4.3E-25 208.7 2.0 264 94-417 284-557 (585)
162 PRK14247 phosphate ABC transpo 99.8 2.3E-20 5E-25 186.4 2.1 211 152-416 3-232 (250)
163 COG4598 HisP ABC-type histidin 99.8 3.9E-20 8.5E-25 170.8 3.4 216 152-416 6-239 (256)
164 PRK10789 putative multidrug tr 99.8 2.5E-20 5.4E-25 207.3 2.5 262 94-417 265-537 (569)
165 PLN03232 ABC transporter C fam 99.8 2.1E-20 4.4E-25 227.1 1.9 265 95-418 1182-1458(1495)
166 cd03262 ABC_HisP_GlnQ_permease 99.8 2.4E-20 5.1E-25 181.6 2.0 184 188-407 18-213 (213)
167 PLN03073 ABC transporter F fam 99.8 1.3E-20 2.8E-25 213.2 0.2 232 152-415 177-427 (718)
168 PRK09984 phosphonate/organopho 99.8 2.3E-20 5E-25 187.8 1.8 224 152-416 4-240 (262)
169 PRK10419 nikE nickel transport 99.8 1.5E-20 3.3E-25 189.8 0.4 198 186-416 28-239 (268)
170 PRK15439 autoinducer 2 ABC tra 99.8 2.7E-20 5.8E-25 204.4 2.3 208 152-416 11-227 (510)
171 cd03297 ABC_ModC_molybdenum_tr 99.8 2.5E-20 5.5E-25 181.8 1.6 189 188-410 16-213 (214)
172 cd03292 ABC_FtsE_transporter F 99.8 1.3E-20 2.7E-25 183.6 -0.6 186 187-407 18-214 (214)
173 TIGR02868 CydC thiol reductant 99.8 2.5E-20 5.4E-25 205.5 1.6 237 94-390 282-528 (529)
174 TIGR01978 sufC FeS assembly AT 99.8 1.8E-20 4E-25 186.0 0.2 199 187-414 17-230 (243)
175 PRK13633 cobalt transporter AT 99.8 3.1E-20 6.6E-25 188.8 1.8 218 152-417 4-232 (280)
176 PRK14268 phosphate ABC transpo 99.8 2.4E-20 5.2E-25 187.3 0.7 210 151-416 11-240 (258)
177 PRK11819 putative ABC transpor 99.8 3.5E-20 7.5E-25 205.5 2.1 212 148-414 2-245 (556)
178 COG4148 ModC ABC-type molybdat 99.8 1E-19 2.2E-24 178.5 4.8 185 195-416 23-216 (352)
179 cd03235 ABC_Metallic_Cations A 99.8 4E-20 8.8E-25 180.1 2.0 181 187-405 16-208 (213)
180 TIGR01184 ntrCD nitrate transp 99.8 3.3E-20 7E-25 183.2 1.3 186 188-415 3-201 (230)
181 PRK13645 cbiO cobalt transport 99.8 2.6E-20 5.6E-25 190.2 0.5 197 187-416 28-238 (289)
182 cd03267 ABC_NatA_like Similar 99.8 5.8E-20 1.3E-24 182.2 3.0 187 185-410 36-235 (236)
183 PTZ00265 multidrug resistance 99.8 3.2E-20 6.9E-25 224.0 1.3 265 97-417 1114-1451(1466)
184 COG4604 CeuD ABC-type enteroch 99.8 1.3E-19 2.9E-24 169.7 5.0 215 152-417 1-224 (252)
185 PRK13547 hmuV hemin importer A 99.8 4.8E-20 1.1E-24 186.6 2.3 198 188-416 19-242 (272)
186 PRK10261 glutathione transport 99.8 2.2E-20 4.8E-25 209.6 -0.2 199 185-416 339-551 (623)
187 cd03233 ABC_PDR_domain1 The pl 99.8 2.1E-19 4.6E-24 174.0 6.7 186 153-410 4-201 (202)
188 PRK15134 microcin C ABC transp 99.8 2.5E-20 5.5E-25 205.5 0.2 220 151-416 4-244 (529)
189 TIGR02204 MsbA_rel ABC transpo 99.8 5.2E-20 1.1E-24 205.0 2.5 261 94-417 286-562 (576)
190 TIGR00957 MRP_assoc_pro multi 99.8 6.2E-20 1.3E-24 223.3 3.3 266 94-418 1231-1508(1522)
191 PRK10771 thiQ thiamine transpo 99.8 6.1E-20 1.3E-24 181.4 2.6 189 189-416 18-217 (232)
192 PLN03130 ABC transporter C fam 99.8 5.4E-20 1.2E-24 224.0 2.5 258 97-418 1187-1461(1622)
193 TIGR01277 thiQ thiamine ABC tr 99.8 6.4E-20 1.4E-24 178.9 2.4 185 188-411 16-211 (213)
194 PRK14267 phosphate ABC transpo 99.8 3.9E-20 8.4E-25 185.0 0.8 210 152-416 4-235 (253)
195 PRK14269 phosphate ABC transpo 99.8 4.4E-20 9.5E-25 184.0 1.1 193 188-417 20-229 (246)
196 PRK13639 cbiO cobalt transport 99.8 4.1E-20 8.8E-25 187.4 0.9 194 187-416 19-224 (275)
197 COG1123 ATPase components of v 99.8 3.3E-20 7.2E-25 199.2 0.2 227 151-421 4-247 (539)
198 PRK15056 manganese/iron transp 99.8 6.2E-20 1.4E-24 185.7 2.1 216 148-416 2-228 (272)
199 cd03214 ABC_Iron-Siderophores_ 99.8 1.1E-19 2.3E-24 172.8 3.6 154 187-409 16-178 (180)
200 TIGR02633 xylG D-xylose ABC tr 99.8 6.1E-20 1.3E-24 201.1 2.1 193 188-416 19-228 (500)
201 PRK10982 galactose/methyl gala 99.8 9E-20 2E-24 199.4 3.4 193 187-416 15-221 (491)
202 PRK10261 glutathione transport 99.8 4.1E-20 8.8E-25 207.4 0.7 224 150-416 10-256 (623)
203 PRK14274 phosphate ABC transpo 99.8 4.2E-20 9.2E-25 185.5 0.6 214 148-416 8-241 (259)
204 TIGR03740 galliderm_ABC gallid 99.8 7.3E-20 1.6E-24 179.7 1.8 183 188-414 18-209 (223)
205 PRK14242 phosphate transporter 99.8 6.1E-20 1.3E-24 183.6 1.3 210 152-416 6-235 (253)
206 PRK14246 phosphate ABC transpo 99.8 7.1E-20 1.5E-24 183.9 1.7 217 150-416 8-239 (257)
207 PRK13649 cbiO cobalt transport 99.8 7.1E-20 1.5E-24 186.0 1.5 196 187-416 24-232 (280)
208 cd03245 ABCC_bacteriocin_expor 99.8 7.2E-20 1.6E-24 179.1 1.3 181 188-409 22-218 (220)
209 PRK10938 putative molybdenum t 99.8 1.3E-19 2.9E-24 198.0 3.5 211 152-416 3-222 (490)
210 cd03300 ABC_PotA_N PotA is an 99.8 6.9E-20 1.5E-24 181.0 1.1 191 187-416 17-218 (232)
211 cd03251 ABCC_MsbA MsbA is an e 99.8 1.2E-19 2.5E-24 179.3 2.7 196 187-416 19-223 (234)
212 PRK14273 phosphate ABC transpo 99.8 7.8E-20 1.7E-24 183.0 1.3 210 152-416 7-236 (254)
213 PRK10418 nikD nickel transport 99.8 9.5E-20 2.1E-24 182.5 1.8 192 188-416 21-228 (254)
214 PRK13549 xylose transporter AT 99.8 3E-19 6.4E-24 196.0 5.8 201 185-416 277-492 (506)
215 TIGR03269 met_CoM_red_A2 methy 99.8 8E-20 1.7E-24 201.2 1.2 202 185-416 299-515 (520)
216 cd03229 ABC_Class3 This class 99.8 3.4E-19 7.3E-24 169.1 5.3 153 187-406 17-178 (178)
217 cd03231 ABC_CcmA_heme_exporter 99.8 2.3E-19 5E-24 173.5 4.3 168 188-398 18-192 (201)
218 TIGR02770 nickel_nikD nickel i 99.8 9.8E-20 2.1E-24 179.7 1.7 191 188-416 4-213 (230)
219 COG0444 DppD ABC-type dipeptid 99.8 7.4E-20 1.6E-24 184.3 0.7 205 183-417 18-242 (316)
220 PRK14256 phosphate ABC transpo 99.8 9.9E-20 2.1E-24 182.1 1.5 211 152-416 4-234 (252)
221 TIGR03608 L_ocin_972_ABC putat 99.8 1.1E-19 2.3E-24 176.0 1.6 175 187-395 15-198 (206)
222 TIGR03269 met_CoM_red_A2 methy 99.8 7.9E-20 1.7E-24 201.2 0.7 201 187-417 17-257 (520)
223 PRK11288 araG L-arabinose tran 99.8 1.1E-19 2.3E-24 199.3 1.4 209 152-412 4-223 (501)
224 PRK14248 phosphate ABC transpo 99.8 1.2E-19 2.6E-24 183.2 1.7 210 152-416 21-250 (268)
225 PRK15134 microcin C ABC transp 99.8 7.8E-20 1.7E-24 201.7 0.3 198 185-416 301-513 (529)
226 PRK14239 phosphate transporter 99.8 1.1E-19 2.5E-24 181.5 1.4 211 151-416 4-234 (252)
227 PRK13642 cbiO cobalt transport 99.8 8.4E-20 1.8E-24 185.3 0.3 213 152-416 4-227 (277)
228 TIGR01194 cyc_pep_trnsptr cycl 99.8 1.5E-19 3.2E-24 200.5 2.1 263 94-410 279-551 (555)
229 PRK10744 pstB phosphate transp 99.8 9.7E-20 2.1E-24 183.1 0.5 211 151-416 12-242 (260)
230 PRK13538 cytochrome c biogenes 99.8 1.5E-19 3.4E-24 175.1 1.9 172 187-398 18-196 (204)
231 PRK10522 multidrug transporter 99.8 1.5E-19 3.2E-24 200.3 1.7 250 96-414 276-534 (547)
232 PRK14235 phosphate transporter 99.8 9.2E-20 2E-24 184.0 0.1 211 151-416 18-249 (267)
233 PRK15064 ABC transporter ATP-b 99.8 2.1E-19 4.6E-24 198.3 2.8 211 153-416 2-240 (530)
234 PRK14270 phosphate ABC transpo 99.8 1.6E-19 3.4E-24 180.5 1.6 211 151-416 3-233 (251)
235 COG4161 ArtP ABC-type arginine 99.8 4E-19 8.6E-24 161.6 4.0 213 153-415 3-227 (242)
236 COG1101 PhnK ABC-type uncharac 99.8 3.2E-19 7E-24 169.3 3.5 201 186-414 22-234 (263)
237 PRK14272 phosphate ABC transpo 99.8 1.3E-19 2.8E-24 181.1 0.6 211 152-416 4-234 (252)
238 PRK09544 znuC high-affinity zi 99.8 1.9E-19 4.1E-24 180.2 1.8 195 152-416 4-207 (251)
239 PTZ00243 ABC transporter; Prov 99.8 2.4E-19 5.3E-24 217.9 2.9 200 186-418 1326-1533(1560)
240 cd03230 ABC_DR_subfamily_A Thi 99.7 6.2E-19 1.3E-23 166.5 5.0 147 187-406 17-172 (173)
241 PRK14245 phosphate ABC transpo 99.7 1.7E-19 3.8E-24 180.1 1.2 196 188-417 21-233 (250)
242 PRK14251 phosphate ABC transpo 99.7 2.4E-19 5.2E-24 179.1 2.2 210 152-416 4-233 (251)
243 PRK14241 phosphate transporter 99.7 1.4E-19 3E-24 181.6 0.5 211 152-416 4-240 (258)
244 KOG0927|consensus 99.7 1.1E-19 2.5E-24 191.5 -0.2 272 186-491 91-392 (614)
245 PRK14240 phosphate transporter 99.7 1.9E-19 4.2E-24 179.7 1.3 192 188-416 21-232 (250)
246 COG4172 ABC-type uncharacteriz 99.7 3.9E-19 8.4E-24 181.8 3.4 200 183-416 300-514 (534)
247 PRK09580 sufC cysteine desulfu 99.7 1.8E-19 3.9E-24 179.5 0.9 198 188-414 19-231 (248)
248 TIGR00968 3a0106s01 sulfate AB 99.7 1.8E-19 3.9E-24 178.7 0.8 193 187-416 17-218 (237)
249 PRK14262 phosphate ABC transpo 99.7 3.3E-19 7.2E-24 178.0 2.4 212 152-416 3-232 (250)
250 TIGR02857 CydD thiol reductant 99.7 2.2E-19 4.8E-24 198.0 1.1 244 93-398 271-524 (529)
251 cd03289 ABCC_CFTR2 The CFTR su 99.7 2.2E-19 4.8E-24 181.9 0.9 187 187-418 21-225 (275)
252 PRK11147 ABC transporter ATPas 99.7 2.5E-19 5.5E-24 201.5 1.4 182 187-415 336-524 (635)
253 COG4619 ABC-type uncharacteriz 99.7 1.1E-18 2.4E-23 159.7 5.3 184 185-406 18-211 (223)
254 PRK10636 putative ABC transpor 99.7 4E-19 8.7E-24 199.8 2.8 178 188-416 330-515 (638)
255 cd03216 ABC_Carb_Monos_I This 99.7 1.1E-18 2.4E-23 163.3 5.3 137 187-409 17-162 (163)
256 PRK14253 phosphate ABC transpo 99.7 3.7E-19 7.9E-24 177.6 2.2 210 152-416 3-231 (249)
257 COG1129 MglA ABC-type sugar tr 99.7 3.2E-19 7E-24 190.4 1.9 214 150-412 6-228 (500)
258 PRK11288 araG L-arabinose tran 99.7 8.2E-19 1.8E-23 192.3 5.0 204 185-416 268-483 (501)
259 TIGR02633 xylG D-xylose ABC tr 99.7 1.2E-18 2.6E-23 190.9 6.3 197 186-414 276-488 (500)
260 PRK13540 cytochrome c biogenes 99.7 6.3E-19 1.4E-23 170.3 3.5 169 188-398 19-194 (200)
261 COG4525 TauB ABC-type taurine 99.7 7.3E-19 1.6E-23 164.5 3.6 184 185-412 20-218 (259)
262 PRK10762 D-ribose transporter 99.7 8.1E-19 1.8E-23 192.4 4.6 203 186-416 268-482 (501)
263 cd03299 ABC_ModC_like Archeal 99.7 3.3E-19 7.2E-24 176.6 1.4 190 188-416 17-217 (235)
264 PRK14271 phosphate ABC transpo 99.7 2.6E-19 5.6E-24 181.7 0.5 210 151-416 20-249 (276)
265 PRK13543 cytochrome c biogenes 99.7 4.1E-19 8.9E-24 173.4 1.9 187 152-398 11-204 (214)
266 cd03252 ABCC_Hemolysin The ABC 99.7 4.3E-19 9.2E-24 175.7 2.0 194 188-416 20-223 (237)
267 cd03247 ABCC_cytochrome_bd The 99.7 1.5E-18 3.2E-23 164.6 5.6 152 188-410 20-177 (178)
268 cd03246 ABCC_Protease_Secretio 99.7 1.9E-18 4.2E-23 163.1 6.3 146 188-407 20-173 (173)
269 TIGR03719 ABC_ABC_ChvD ATP-bin 99.7 2.6E-19 5.6E-24 198.5 0.3 209 151-414 3-243 (552)
270 PRK14259 phosphate ABC transpo 99.7 4.3E-19 9.4E-24 179.4 1.8 209 152-416 13-251 (269)
271 COG4608 AppF ABC-type oligopep 99.7 6.3E-19 1.4E-23 174.1 2.7 186 151-417 3-198 (268)
272 cd03217 ABC_FeS_Assembly ABC-t 99.7 1.4E-18 3.1E-23 167.9 5.2 159 187-411 17-187 (200)
273 PRK03695 vitamin B12-transport 99.7 6.8E-19 1.5E-23 175.8 3.0 193 187-416 13-220 (248)
274 PRK14244 phosphate ABC transpo 99.7 3E-19 6.5E-24 178.5 0.4 193 187-416 22-235 (251)
275 PRK14258 phosphate ABC transpo 99.7 3.2E-19 6.8E-24 179.5 0.4 212 152-416 7-243 (261)
276 PRK14254 phosphate ABC transpo 99.7 4.4E-19 9.5E-24 180.8 1.3 212 149-416 36-267 (285)
277 PRK14275 phosphate ABC transpo 99.7 4E-19 8.6E-24 181.2 1.0 194 188-416 57-268 (286)
278 PRK09700 D-allose transporter 99.7 1.6E-18 3.5E-23 190.4 5.8 202 185-413 278-493 (510)
279 cd03254 ABCC_Glucan_exporter_l 99.7 4.5E-19 9.8E-24 174.6 1.1 194 188-416 21-224 (229)
280 PRK15064 ABC transporter ATP-b 99.7 5.5E-19 1.2E-23 195.0 1.9 178 188-416 337-523 (530)
281 PRK13539 cytochrome c biogenes 99.7 5.6E-19 1.2E-23 171.6 1.7 184 152-396 2-192 (207)
282 PRK14249 phosphate ABC transpo 99.7 5.8E-19 1.3E-23 176.4 1.8 212 152-416 4-233 (251)
283 CHL00131 ycf16 sulfate ABC tra 99.7 3.8E-19 8.2E-24 177.7 0.5 202 188-414 25-237 (252)
284 PRK14237 phosphate transporter 99.7 4.5E-19 9.8E-24 179.0 1.0 210 152-416 20-249 (267)
285 TIGR02982 heterocyst_DevA ABC 99.7 4.2E-19 9.1E-24 174.0 0.6 187 187-407 22-219 (220)
286 COG4674 Uncharacterized ABC-ty 99.7 3.7E-19 7.9E-24 166.5 0.2 208 185-417 20-234 (249)
287 TIGR01166 cbiO cobalt transpor 99.7 8.2E-19 1.8E-23 168.0 2.5 169 187-393 9-189 (190)
288 cd03234 ABCG_White The White s 99.7 7.1E-19 1.5E-23 173.0 2.1 184 186-410 23-225 (226)
289 PRK15439 autoinducer 2 ABC tra 99.7 1.6E-18 3.4E-23 190.5 4.9 197 186-416 279-490 (510)
290 PRK14236 phosphate transporter 99.7 8.2E-19 1.8E-23 177.6 2.5 211 151-416 24-254 (272)
291 cd03215 ABC_Carb_Monos_II This 99.7 2.7E-18 5.9E-23 163.4 5.7 153 188-407 18-182 (182)
292 cd03232 ABC_PDR_domain2 The pl 99.7 2E-18 4.3E-23 165.8 4.8 155 187-410 24-191 (192)
293 COG4618 ArpD ABC-type protease 99.7 5.8E-19 1.3E-23 185.2 1.1 271 71-419 272-561 (580)
294 TIGR01189 ccmA heme ABC export 99.7 1.2E-18 2.6E-23 168.0 3.1 168 187-395 17-191 (198)
295 PRK14255 phosphate ABC transpo 99.7 4.9E-19 1.1E-23 177.0 0.4 210 152-416 5-234 (252)
296 TIGR03719 ABC_ABC_ChvD ATP-bin 99.7 1.2E-18 2.7E-23 193.0 3.7 180 187-414 339-526 (552)
297 cd03244 ABCC_MRP_domain2 Domai 99.7 8.6E-19 1.9E-23 171.6 2.0 192 187-411 21-219 (221)
298 PRK14238 phosphate transporter 99.7 6E-19 1.3E-23 178.5 0.8 209 152-416 24-253 (271)
299 PRK11819 putative ABC transpor 99.7 1E-18 2.2E-23 193.8 2.8 181 187-414 341-528 (556)
300 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.7 1.1E-18 2.4E-23 171.7 2.5 174 187-410 39-223 (224)
301 PRK14243 phosphate transporter 99.7 7.1E-19 1.5E-23 177.3 1.2 209 152-416 10-246 (264)
302 PRK10938 putative molybdenum t 99.7 1E-18 2.2E-23 191.1 2.3 199 186-414 276-488 (490)
303 COG0488 Uup ATPase components 99.7 2.2E-18 4.8E-23 187.8 4.9 177 186-414 338-520 (530)
304 PRK14264 phosphate ABC transpo 99.7 9.3E-19 2E-23 180.1 1.9 224 150-416 43-287 (305)
305 PRK14261 phosphate ABC transpo 99.7 5.7E-19 1.2E-23 176.7 0.3 211 151-416 5-235 (253)
306 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.7 1.2E-18 2.6E-23 172.6 2.3 195 188-416 21-224 (238)
307 COG3845 ABC-type uncharacteriz 99.7 2.1E-18 4.5E-23 181.2 4.1 212 151-412 3-223 (501)
308 cd03253 ABCC_ATM1_transporter 99.7 1.4E-18 3.1E-23 171.8 2.7 195 188-416 19-222 (236)
309 TIGR03771 anch_rpt_ABC anchore 99.7 2E-18 4.4E-23 169.7 3.4 187 192-416 2-199 (223)
310 COG4107 PhnK ABC-type phosphon 99.7 3.1E-18 6.8E-23 157.5 4.2 220 150-416 4-239 (258)
311 cd03213 ABCG_EPDR ABCG transpo 99.7 4E-18 8.6E-23 164.1 5.0 156 187-410 26-193 (194)
312 PLN03211 ABC transporter G-25; 99.7 3.7E-18 7.9E-23 192.2 5.4 196 187-421 85-299 (659)
313 PRK14260 phosphate ABC transpo 99.7 8.1E-19 1.8E-23 176.3 0.1 212 152-416 7-241 (259)
314 cd03228 ABCC_MRP_Like The MRP 99.7 5E-18 1.1E-22 160.0 5.2 146 188-406 20-171 (171)
315 cd03237 ABC_RNaseL_inhibitor_d 99.7 3.1E-18 6.7E-23 170.9 4.0 162 191-405 20-192 (246)
316 PTZ00265 multidrug resistance 99.7 1.1E-18 2.5E-23 210.6 0.6 258 100-405 339-655 (1466)
317 PRK10982 galactose/methyl gala 99.7 4.2E-18 9.2E-23 186.3 5.0 202 185-414 263-476 (491)
318 cd03369 ABCC_NFT1 Domain 2 of 99.7 4E-18 8.6E-23 165.4 4.2 175 188-412 26-206 (207)
319 COG1119 ModF ABC-type molybden 99.7 3.1E-18 6.6E-23 166.2 3.4 213 150-411 29-255 (257)
320 COG5265 ATM1 ABC-type transpor 99.7 8.7E-19 1.9E-23 180.3 -0.5 273 85-419 201-487 (497)
321 TIGR01187 potA spermidine/putr 99.7 1.6E-18 3.4E-23 179.9 1.1 177 201-417 1-189 (325)
322 PRK14252 phosphate ABC transpo 99.7 1.4E-18 3.1E-23 175.1 0.7 212 152-416 16-247 (265)
323 TIGR01271 CFTR_protein cystic 99.7 2E-18 4.3E-23 209.7 2.1 272 95-418 1151-1440(1490)
324 PRK14265 phosphate ABC transpo 99.7 2.1E-18 4.5E-23 174.8 1.6 208 152-416 20-256 (274)
325 PRK14266 phosphate ABC transpo 99.7 1.7E-18 3.7E-23 172.9 0.9 193 187-416 20-232 (250)
326 COG4167 SapF ABC-type antimicr 99.7 5.2E-18 1.1E-22 157.2 3.7 225 151-417 3-238 (267)
327 cd03288 ABCC_SUR2 The SUR doma 99.7 2.8E-18 6.2E-23 172.2 2.1 195 187-416 38-241 (257)
328 TIGR02324 CP_lyasePhnL phospho 99.7 2.3E-18 5.1E-23 169.0 1.3 177 187-396 25-214 (224)
329 cd03248 ABCC_TAP TAP, the Tran 99.7 2.2E-18 4.8E-23 169.4 0.7 205 151-406 10-225 (226)
330 PRK13541 cytochrome c biogenes 99.7 6.3E-18 1.4E-22 162.6 3.2 167 189-400 19-192 (195)
331 PRK13546 teichoic acids export 99.7 5.3E-18 1.1E-22 171.0 2.3 217 152-417 4-231 (264)
332 COG1134 TagH ABC-type polysacc 99.7 5.2E-18 1.1E-22 164.7 1.9 183 183-420 40-238 (249)
333 PRK14263 phosphate ABC transpo 99.7 4.3E-18 9.2E-23 171.4 1.0 194 187-416 25-243 (261)
334 PLN03232 ABC transporter C fam 99.7 5.6E-18 1.2E-22 206.0 1.1 254 91-417 563-827 (1495)
335 cd03222 ABC_RNaseL_inhibitor T 99.7 2.1E-17 4.6E-22 156.7 4.8 122 191-407 20-150 (177)
336 PRK14257 phosphate ABC transpo 99.7 1E-17 2.3E-22 173.9 2.8 216 151-417 79-312 (329)
337 cd03290 ABCC_SUR1_N The SUR do 99.7 1.1E-17 2.4E-22 163.6 1.9 190 187-405 18-217 (218)
338 cd03223 ABCD_peroxisomal_ALDP 99.7 3.9E-17 8.5E-22 153.3 5.2 140 188-404 19-162 (166)
339 PLN03130 ABC transporter C fam 99.7 1E-17 2.2E-22 204.2 1.3 252 92-417 564-827 (1622)
340 cd03250 ABCC_MRP_domain1 Domai 99.7 1E-17 2.3E-22 162.1 1.0 174 187-406 22-204 (204)
341 TIGR00954 3a01203 Peroxysomal 99.7 8.5E-18 1.8E-22 189.8 -1.1 250 92-403 376-652 (659)
342 PLN03073 ABC transporter F fam 99.7 3.9E-17 8.5E-22 185.1 4.1 173 188-410 527-705 (718)
343 PRK10535 macrolide transporter 99.6 3.8E-17 8.2E-22 184.3 2.9 217 152-416 4-230 (648)
344 TIGR00955 3a01204 The Eye Pigm 99.6 1.1E-16 2.4E-21 179.6 6.4 202 185-421 40-259 (617)
345 PRK13409 putative ATPase RIL; 99.6 4.5E-17 9.8E-22 181.2 2.8 170 188-412 357-536 (590)
346 PRK13545 tagH teichoic acids e 99.6 8.6E-17 1.9E-21 173.7 4.2 185 186-418 40-232 (549)
347 KOG0054|consensus 99.6 7.4E-17 1.6E-21 189.0 3.3 199 186-418 1156-1362(1381)
348 cd03291 ABCC_CFTR1 The CFTR su 99.6 9.9E-17 2.1E-21 163.1 2.6 184 186-417 53-246 (282)
349 PRK15177 Vi polysaccharide exp 99.6 9.8E-17 2.1E-21 156.7 1.8 179 187-416 4-190 (213)
350 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.6 7.2E-16 1.6E-20 141.5 6.8 122 188-406 18-144 (144)
351 TIGR00957 MRP_assoc_pro multi 99.6 1.4E-16 3E-21 194.2 2.2 251 95-417 586-849 (1522)
352 KOG0066|consensus 99.6 2.3E-17 4.9E-22 169.7 -4.5 208 189-416 283-496 (807)
353 COG0396 sufC Cysteine desulfur 99.6 1.7E-16 3.6E-21 152.6 1.6 202 187-418 21-233 (251)
354 cd03236 ABC_RNaseL_inhibitor_d 99.6 1.9E-16 4.1E-21 158.9 1.4 181 193-408 23-217 (255)
355 cd00267 ABC_ATPase ABC (ATP-bi 99.6 1.6E-15 3.4E-20 140.8 6.3 131 188-405 17-156 (157)
356 TIGR00956 3a01205 Pleiotropic 99.6 5.8E-16 1.3E-20 187.0 4.3 208 186-420 77-302 (1394)
357 PLN03140 ABC transporter G fam 99.6 1.5E-15 3.2E-20 183.3 7.6 207 185-419 180-428 (1470)
358 TIGR00956 3a01205 Pleiotropic 99.6 6.7E-16 1.5E-20 186.4 4.3 184 185-414 778-989 (1394)
359 PRK13409 putative ATPase RIL; 99.6 4.3E-16 9.3E-21 173.4 2.0 169 192-404 95-286 (590)
360 cd03238 ABC_UvrA The excision 99.6 1.4E-15 2.9E-20 144.2 3.1 150 183-406 8-165 (176)
361 COG4778 PhnL ABC-type phosphon 99.5 2.1E-15 4.6E-20 138.5 3.1 206 152-398 4-219 (235)
362 COG1160 Predicted GTPases [Gen 99.5 3.6E-14 7.8E-19 148.8 12.7 217 197-417 4-302 (444)
363 COG4172 ABC-type uncharacteriz 99.5 6.1E-16 1.3E-20 158.6 -1.2 228 149-416 3-245 (534)
364 KOG0061|consensus 99.5 5.4E-15 1.2E-19 165.1 6.2 195 185-421 45-263 (613)
365 KOG0054|consensus 99.5 3.1E-15 6.6E-20 175.6 2.5 251 95-417 469-730 (1381)
366 KOG0927|consensus 99.5 4.4E-15 9.6E-20 157.1 3.1 178 188-414 408-591 (614)
367 PLN03140 ABC transporter G fam 99.5 4.9E-15 1.1E-19 178.8 3.8 189 185-413 895-1105(1470)
368 COG4615 PvdE ABC-type sideroph 99.5 8.5E-15 1.8E-19 149.8 4.9 182 189-412 342-531 (546)
369 PRK03003 GTP-binding protein D 99.5 4.4E-13 9.5E-18 146.1 18.2 209 196-417 38-335 (472)
370 TIGR01271 CFTR_protein cystic 99.5 5.8E-15 1.3E-19 179.7 3.2 184 185-417 441-635 (1490)
371 COG4138 BtuD ABC-type cobalami 99.5 4.3E-14 9.4E-19 130.5 7.9 188 189-416 18-219 (248)
372 PF00005 ABC_tran: ABC transpo 99.5 4.7E-16 1E-20 140.4 -5.1 128 188-361 3-133 (137)
373 cd03270 ABC_UvrA_I The excisio 99.5 1.2E-14 2.6E-19 143.4 1.3 92 313-411 121-226 (226)
374 TIGR03594 GTPase_EngA ribosome 99.4 1.6E-12 3.4E-17 139.9 16.4 207 198-417 1-296 (429)
375 PTZ00243 ABC transporter; Prov 99.4 1.7E-14 3.7E-19 175.9 0.7 185 185-417 675-869 (1560)
376 COG4133 CcmA ABC-type transpor 99.4 8.1E-14 1.8E-18 130.3 4.8 164 189-395 21-194 (209)
377 KOG0066|consensus 99.4 1E-13 2.3E-18 143.0 4.4 172 190-412 607-784 (807)
378 COG4136 ABC-type uncharacteriz 99.4 1.7E-13 3.6E-18 123.7 3.8 135 188-361 20-159 (213)
379 PRK00093 GTP-binding protein D 99.4 1.1E-11 2.4E-16 133.6 18.4 208 197-417 2-297 (435)
380 PRK09518 bifunctional cytidyla 99.4 1.3E-11 2.8E-16 140.9 18.6 210 196-417 275-574 (712)
381 KOG0073|consensus 99.3 3.9E-12 8.5E-17 115.9 6.8 92 195-298 15-107 (185)
382 KOG0070|consensus 99.3 1.5E-12 3.2E-17 121.4 3.5 124 191-332 12-136 (181)
383 cd03272 ABC_SMC3_euk Eukaryoti 99.3 5.5E-13 1.2E-17 132.4 0.0 65 325-395 154-225 (243)
384 cd03278 ABC_SMC_barmotin Barmo 99.3 7.6E-13 1.7E-17 127.8 -0.2 154 189-396 16-181 (197)
385 cd03271 ABC_UvrA_II The excisi 99.2 1.6E-12 3.5E-17 130.6 1.1 95 312-413 152-261 (261)
386 KOG0084|consensus 99.2 2.2E-11 4.9E-16 114.4 7.9 109 195-317 8-121 (205)
387 cd03279 ABC_sbcCD SbcCD and ot 99.2 2.3E-12 4.9E-17 125.9 0.2 75 325-406 119-210 (213)
388 KOG0071|consensus 99.2 2.1E-11 4.4E-16 108.4 6.2 123 194-334 15-138 (180)
389 KOG0065|consensus 99.2 2.2E-11 4.8E-16 140.8 7.9 192 185-415 806-1018(1391)
390 KOG0062|consensus 99.2 7.2E-12 1.6E-16 132.4 2.9 174 191-414 385-564 (582)
391 PF00025 Arf: ADP-ribosylation 99.2 4.3E-11 9.3E-16 113.2 7.7 93 194-298 12-105 (175)
392 KOG0074|consensus 99.2 2.9E-11 6.4E-16 107.5 5.6 92 195-297 16-108 (185)
393 COG1129 MglA ABC-type sugar tr 99.2 2.3E-11 4.9E-16 130.6 5.7 201 187-416 276-488 (500)
394 cd03274 ABC_SMC4_euk Eukaryoti 99.1 6E-11 1.3E-15 115.9 6.4 154 197-393 26-192 (212)
395 COG1245 Predicted ATPase, RNas 99.1 4.7E-11 1E-15 124.6 5.0 153 193-398 364-523 (591)
396 cd03240 ABC_Rad50 The catalyti 99.1 1.5E-11 3.3E-16 119.4 1.0 73 326-402 112-195 (204)
397 COG4178 ABC-type uncharacteriz 99.1 5.6E-11 1.2E-15 130.0 3.3 252 72-392 305-575 (604)
398 KOG0094|consensus 99.1 2.8E-10 6E-15 106.9 7.2 109 195-317 21-135 (221)
399 KOG2355|consensus 99.1 2.9E-10 6.3E-15 107.9 7.3 205 150-409 11-228 (291)
400 COG1245 Predicted ATPase, RNas 99.0 4.2E-11 9.1E-16 125.0 -0.6 184 193-411 97-294 (591)
401 cd04161 Arl2l1_Arl13_like Arl2 99.0 8.9E-10 1.9E-14 103.1 8.2 89 198-298 1-90 (167)
402 KOG0080|consensus 99.0 6.2E-10 1.3E-14 101.2 6.4 97 196-303 11-112 (209)
403 cd04149 Arf6 Arf6 subfamily. 99.0 1.1E-09 2.4E-14 102.7 8.4 89 195-295 8-97 (168)
404 cd04120 Rab12 Rab12 subfamily. 99.0 9.9E-10 2.1E-14 106.5 8.2 106 198-317 2-112 (202)
405 PLN00223 ADP-ribosylation fact 99.0 1.3E-09 2.8E-14 103.6 8.7 89 195-295 16-105 (181)
406 cd04157 Arl6 Arl6 subfamily. 99.0 1.1E-09 2.4E-14 100.7 8.0 81 198-290 1-84 (162)
407 KOG0078|consensus 99.0 1.3E-09 2.8E-14 103.9 8.2 109 195-317 11-124 (207)
408 cd04154 Arl2 Arl2 subfamily. 99.0 1.4E-09 3E-14 102.0 8.4 87 195-293 13-100 (173)
409 PTZ00133 ADP-ribosylation fact 99.0 1.3E-09 2.8E-14 103.7 8.1 88 195-294 16-104 (182)
410 smart00178 SAR Sar1p-like memb 99.0 1.4E-09 3E-14 103.5 8.3 88 194-293 15-103 (184)
411 PTZ00132 GTP-binding nuclear p 99.0 1.8E-09 4E-14 105.2 8.9 89 195-294 8-101 (215)
412 cd04162 Arl9_Arfrp2_like Arl9/ 99.0 1.4E-09 3.1E-14 101.5 7.8 85 199-295 2-88 (164)
413 cd04109 Rab28 Rab28 subfamily. 99.0 1.8E-09 3.9E-14 105.4 8.6 92 198-300 2-99 (215)
414 KOG0092|consensus 99.0 6E-10 1.3E-14 104.5 4.8 109 195-317 4-117 (200)
415 KOG0098|consensus 99.0 1.6E-09 3.5E-14 101.0 7.6 108 196-317 6-118 (216)
416 cd04158 ARD1 ARD1 subfamily. 98.9 1.9E-09 4.2E-14 100.8 8.1 88 198-297 1-89 (169)
417 cd04107 Rab32_Rab38 Rab38/Rab3 98.9 2.1E-09 4.6E-14 103.6 8.5 90 198-298 2-97 (201)
418 cd04150 Arf1_5_like Arf1-Arf5- 98.9 1.7E-09 3.7E-14 100.3 7.6 86 198-295 2-88 (159)
419 cd00879 Sar1 Sar1 subfamily. 98.9 2.3E-09 5.1E-14 101.9 8.6 84 195-290 18-102 (190)
420 cd04155 Arl3 Arl3 subfamily. 98.9 4.1E-09 8.9E-14 98.3 10.1 81 195-287 13-94 (173)
421 smart00177 ARF ARF-like small 98.9 3E-09 6.4E-14 100.4 8.4 90 196-297 13-103 (175)
422 cd04156 ARLTS1 ARLTS1 subfamil 98.9 2.2E-09 4.7E-14 98.8 7.3 83 198-291 1-84 (160)
423 cd04159 Arl10_like Arl10-like 98.9 4.7E-09 1E-13 95.2 9.5 78 199-288 2-81 (159)
424 COG4170 SapD ABC-type antimicr 98.9 3.7E-10 8E-15 107.4 1.7 208 183-416 20-246 (330)
425 cd04136 Rap_like Rap-like subf 98.9 3E-09 6.6E-14 97.9 7.6 93 197-300 2-98 (163)
426 cd04121 Rab40 Rab40 subfamily. 98.9 3.9E-09 8.5E-14 101.3 8.5 107 196-317 6-117 (189)
427 cd04122 Rab14 Rab14 subfamily. 98.9 3.5E-09 7.5E-14 98.5 7.9 91 197-298 3-98 (166)
428 cd04144 Ras2 Ras2 subfamily. 98.9 2.7E-09 5.9E-14 101.9 7.3 91 198-299 1-95 (190)
429 PRK00349 uvrA excinuclease ABC 98.9 9.8E-10 2.1E-14 127.5 4.3 96 313-417 814-926 (943)
430 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 98.9 5.7E-09 1.2E-13 96.8 8.7 93 197-300 3-100 (166)
431 cd03273 ABC_SMC2_euk Eukaryoti 98.9 1.7E-10 3.7E-15 115.5 -1.7 68 325-398 162-236 (251)
432 cd04102 RabL3 RabL3 (Rab-like3 98.9 5.6E-09 1.2E-13 101.3 8.9 92 198-300 2-103 (202)
433 cd01865 Rab3 Rab3 subfamily. 98.9 4.1E-09 8.8E-14 98.0 7.6 93 197-300 2-99 (165)
434 cd01867 Rab8_Rab10_Rab13_like 98.9 5.1E-09 1.1E-13 97.5 8.3 107 197-317 4-115 (167)
435 cd04119 RJL RJL (RabJ-Like) su 98.9 4.4E-09 9.6E-14 96.9 7.7 90 198-298 2-96 (168)
436 cd04117 Rab15 Rab15 subfamily. 98.9 5.8E-09 1.2E-13 96.8 8.5 106 198-317 2-112 (161)
437 KOG0079|consensus 98.9 1.7E-09 3.6E-14 97.1 4.6 93 198-301 10-107 (198)
438 cd04140 ARHI_like ARHI subfami 98.9 5.2E-09 1.1E-13 97.3 8.2 110 197-317 2-115 (165)
439 KOG0084|consensus 98.9 7E-09 1.5E-13 97.7 8.8 108 311-418 10-128 (205)
440 KOG0087|consensus 98.9 2E-09 4.3E-14 102.4 5.1 109 195-317 13-126 (222)
441 KOG0394|consensus 98.9 3.1E-09 6.8E-14 98.9 6.2 123 197-338 10-138 (210)
442 cd00878 Arf_Arl Arf (ADP-ribos 98.9 6.5E-09 1.4E-13 95.5 8.0 84 198-293 1-85 (158)
443 PLN03071 GTP-binding nuclear p 98.8 6.8E-09 1.5E-13 101.8 8.3 108 195-317 12-124 (219)
444 cd01868 Rab11_like Rab11-like. 98.8 7.7E-09 1.7E-13 95.7 8.2 91 197-298 4-99 (165)
445 KOG0095|consensus 98.8 6.8E-09 1.5E-13 93.3 7.3 96 197-303 8-108 (213)
446 TIGR00630 uvra excinuclease AB 98.8 5.4E-10 1.2E-14 129.4 0.4 96 314-416 813-923 (924)
447 cd04153 Arl5_Arl8 Arl5/Arl8 su 98.8 8E-09 1.7E-13 97.2 8.3 85 195-291 14-99 (174)
448 cd04176 Rap2 Rap2 subgroup. T 98.8 6.9E-09 1.5E-13 95.8 7.6 93 197-300 2-98 (163)
449 cd04116 Rab9 Rab9 subfamily. 98.8 1.1E-08 2.3E-13 95.3 8.9 91 196-297 5-100 (170)
450 cd04138 H_N_K_Ras_like H-Ras/N 98.8 8.7E-09 1.9E-13 94.3 7.9 88 197-295 2-93 (162)
451 cd01861 Rab6 Rab6 subfamily. 98.8 1E-08 2.3E-13 94.2 8.4 89 198-297 2-95 (161)
452 cd04128 Spg1 Spg1p. Spg1p (se 98.8 6.9E-09 1.5E-13 98.8 7.4 92 198-300 2-98 (182)
453 KOG0060|consensus 98.8 1.8E-09 3.9E-14 115.8 3.7 260 74-392 340-628 (659)
454 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 98.8 9.3E-09 2E-13 98.1 8.1 108 195-317 4-116 (182)
455 cd04131 Rnd Rnd subfamily. Th 98.8 8.5E-09 1.8E-13 97.9 7.8 106 197-317 2-112 (178)
456 cd01874 Cdc42 Cdc42 subfamily. 98.8 9.3E-09 2E-13 97.1 7.9 105 198-317 3-112 (175)
457 cd01866 Rab2 Rab2 subfamily. 98.8 1.2E-08 2.6E-13 95.2 8.5 91 197-298 5-100 (168)
458 PTZ00369 Ras-like protein; Pro 98.8 1E-08 2.2E-13 97.9 8.0 93 195-298 4-100 (189)
459 cd04125 RabA_like RabA-like su 98.8 1.2E-08 2.6E-13 97.1 8.5 92 198-300 2-98 (188)
460 cd01875 RhoG RhoG subfamily. 98.8 1.1E-08 2.4E-13 98.0 8.2 106 197-317 4-114 (191)
461 KOG0075|consensus 98.8 1.5E-09 3.2E-14 97.5 1.9 115 190-318 14-130 (186)
462 KOG0070|consensus 98.8 8.3E-09 1.8E-13 96.5 6.9 113 308-421 15-135 (181)
463 cd03275 ABC_SMC1_euk Eukaryoti 98.8 1.6E-09 3.4E-14 108.3 2.2 67 325-398 151-226 (247)
464 cd04113 Rab4 Rab4 subfamily. 98.8 1.3E-08 2.9E-13 93.7 8.1 90 198-298 2-96 (161)
465 cd04141 Rit_Rin_Ric Rit/Rin/Ri 98.8 1.3E-08 2.9E-13 95.7 8.1 108 197-317 3-114 (172)
466 cd04152 Arl4_Arl7 Arl4/Arl7 su 98.8 1E-08 2.2E-13 97.5 7.4 86 196-292 3-93 (183)
467 PF00071 Ras: Ras family; Int 98.8 1.1E-08 2.4E-13 94.2 7.5 107 198-318 1-112 (162)
468 cd04110 Rab35 Rab35 subfamily. 98.8 1E-08 2.2E-13 98.9 7.4 91 197-298 7-102 (199)
469 cd04108 Rab36_Rab34 Rab34/Rab3 98.8 1.1E-08 2.3E-13 96.1 7.4 90 198-298 2-96 (170)
470 cd03276 ABC_SMC6_euk Eukaryoti 98.8 1.5E-09 3.3E-14 104.9 1.5 77 324-406 104-192 (198)
471 cd03280 ABC_MutS2 MutS2 homolo 98.8 5.8E-09 1.3E-13 100.9 5.4 74 327-410 89-171 (200)
472 smart00173 RAS Ras subfamily o 98.8 1.4E-08 2.9E-13 93.9 7.6 88 198-296 2-93 (164)
473 KOG0086|consensus 98.8 8.9E-09 1.9E-13 92.9 6.0 107 197-317 10-121 (214)
474 PLN00023 GTP-binding protein; 98.8 1.3E-08 2.8E-13 104.6 8.0 96 195-301 20-133 (334)
475 PLN03110 Rab GTPase; Provision 98.8 1.8E-08 3.8E-13 98.6 8.7 93 195-298 11-108 (216)
476 cd04118 Rab24 Rab24 subfamily. 98.8 1.6E-08 3.4E-13 96.5 8.2 90 198-298 2-97 (193)
477 cd00877 Ran Ran (Ras-related n 98.8 1E-08 2.2E-13 95.8 6.8 105 198-317 2-111 (166)
478 cd04115 Rab33B_Rab33A Rab33B/R 98.8 1.9E-08 4.1E-13 94.1 8.5 92 197-299 3-100 (170)
479 cd04127 Rab27A Rab27a subfamil 98.8 1.5E-08 3.3E-13 95.2 8.0 93 197-300 5-112 (180)
480 cd04106 Rab23_lke Rab23-like s 98.8 1.6E-08 3.6E-13 93.0 7.6 89 198-297 2-97 (162)
481 cd01864 Rab19 Rab19 subfamily. 98.8 1.6E-08 3.5E-13 93.8 7.6 94 196-300 3-101 (165)
482 cd04133 Rop_like Rop subfamily 98.8 1.4E-08 3.1E-13 96.3 7.3 105 198-317 3-112 (176)
483 PRK00635 excinuclease ABC subu 98.8 2.3E-09 5E-14 129.9 2.2 98 313-417 793-905 (1809)
484 cd04124 RabL2 RabL2 subfamily. 98.8 1.7E-08 3.8E-13 93.5 7.6 89 198-297 2-95 (161)
485 cd04151 Arl1 Arl1 subfamily. 98.8 3.1E-08 6.7E-13 91.3 9.2 78 198-287 1-79 (158)
486 cd04160 Arfrp1 Arfrp1 subfamil 98.8 1.8E-08 3.8E-13 93.4 7.4 79 198-288 1-87 (167)
487 cd04112 Rab26 Rab26 subfamily. 98.8 2.1E-08 4.5E-13 95.9 8.1 90 198-298 2-97 (191)
488 cd04126 Rab20 Rab20 subfamily. 98.8 1.6E-08 3.5E-13 99.4 7.3 88 198-297 2-90 (220)
489 cd04175 Rap1 Rap1 subgroup. T 98.7 2.1E-08 4.5E-13 92.8 7.6 92 197-299 2-97 (164)
490 cd04101 RabL4 RabL4 (Rab-like4 98.7 3E-08 6.4E-13 91.6 8.5 90 198-298 2-99 (164)
491 KOG0092|consensus 98.7 2E-08 4.4E-13 94.3 7.3 110 309-418 4-124 (200)
492 PLN03108 Rab family protein; P 98.7 2.1E-08 4.6E-13 97.6 7.8 89 197-296 7-100 (210)
493 cd01860 Rab5_related Rab5-rela 98.7 2.1E-08 4.7E-13 92.3 7.4 91 197-298 2-97 (163)
494 PLN03118 Rab family protein; P 98.7 3.6E-08 7.8E-13 95.8 9.1 88 195-293 13-104 (211)
495 KOG0073|consensus 98.7 3.9E-08 8.4E-13 90.0 8.6 114 310-424 16-137 (185)
496 cd04145 M_R_Ras_like M-Ras/R-R 98.7 2.6E-08 5.7E-13 91.7 7.7 89 197-296 3-95 (164)
497 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 98.7 3.2E-08 6.8E-13 98.1 8.4 86 196-292 13-102 (232)
498 smart00175 RAB Rab subfamily o 98.7 4E-08 8.6E-13 90.4 8.5 88 198-296 2-94 (164)
499 cd04143 Rhes_like Rhes_like su 98.7 3.3E-08 7.1E-13 98.9 7.7 92 198-300 2-97 (247)
500 cd01862 Rab7 Rab7 subfamily. 98.7 5.6E-08 1.2E-12 90.2 8.8 83 198-291 2-89 (172)
No 1
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.94 E-value=1.7e-28 Score=232.76 Aligned_cols=210 Identities=14% Similarity=0.121 Sum_probs=158.7
Q ss_pred hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304 152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN 231 (537)
Q Consensus 152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t 231 (537)
++.++++.|+||...+..+ +++.+.+|++++|+||+||||||||++|.++ ..|++|
T Consensus 2 mi~i~~l~K~fg~~~VLkg------------------i~l~v~~Gevv~iiGpSGSGKSTlLRclN~L----E~~~~G-- 57 (240)
T COG1126 2 MIEIKNLSKSFGDKEVLKG------------------ISLSVEKGEVVVIIGPSGSGKSTLLRCLNGL----EEPDSG-- 57 (240)
T ss_pred eEEEEeeeEEeCCeEEecC------------------cceeEcCCCEEEEECCCCCCHHHHHHHHHCC----cCCCCc--
Confidence 5778999999987665554 4577889999999999999999999999999 999999
Q ss_pred eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC---cccc
Q psy16304 232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDF 308 (537)
Q Consensus 232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~ 308 (537)
.|.++| ..+..-. .....++.+|+|||.+.+|+.++. .+++........... ....
T Consensus 58 --~I~i~g-~~~~~~~------~~~~~R~~vGmVFQ~fnLFPHlTv------------leNv~lap~~v~~~~k~eA~~~ 116 (240)
T COG1126 58 --SITVDG-EDVGDKK------DILKLRRKVGMVFQQFNLFPHLTV------------LENVTLAPVKVKKLSKAEAREK 116 (240)
T ss_pred --eEEECC-Eeccchh------hHHHHHHhcCeecccccccccchH------------HHHHHhhhHHHcCCCHHHHHHH
Confidence 999987 3332111 123345889999999999999877 333332222222221 2223
Q ss_pred CCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCch--hhHHHHH---HHHHhcCCE
Q psy16304 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGS--EDFRTIW---KQYLGTVSQ 381 (537)
Q Consensus 309 ~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl--~~~~~l~---~~~~~~~~~ 381 (537)
+...+..+|+.+.. +.++.+|||||+||+ ++||++.. + |+++++| |+.+ +...+++ ..+.+++ -
T Consensus 117 A~~lL~~VGL~~ka-~~yP~qLSGGQqQRV----AIARALaM-~--P~vmLFDEPTSALDPElv~EVL~vm~~LA~eG-m 187 (240)
T COG1126 117 ALELLEKVGLADKA-DAYPAQLSGGQQQRV----AIARALAM-D--PKVMLFDEPTSALDPELVGEVLDVMKDLAEEG-M 187 (240)
T ss_pred HHHHHHHcCchhhh-hhCccccCcHHHHHH----HHHHHHcC-C--CCEEeecCCcccCCHHHHHHHHHHHHHHHHcC-C
Confidence 34556689998886 667999999999999 99999996 5 8999999 9999 3334444 5555554 4
Q ss_pred EEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccch
Q psy16304 382 TLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 382 vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl 416 (537)
+++++ +|++.++..+. +++|++|+++..++++++
T Consensus 188 TMivV-THEM~FAr~VadrviFmd~G~iie~g~p~~~ 223 (240)
T COG1126 188 TMIIV-THEMGFAREVADRVIFMDQGKIIEEGPPEEF 223 (240)
T ss_pred eEEEE-echhHHHHHhhheEEEeeCCEEEEecCHHHH
Confidence 56666 79999888766 999999999999988877
No 2
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=1.9e-27 Score=236.18 Aligned_cols=218 Identities=15% Similarity=0.118 Sum_probs=169.6
Q ss_pred hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304 152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN 231 (537)
Q Consensus 152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t 231 (537)
++.+++++|.|+.. .... +.+.++++|.+++|+++||+|.+|||||||++++.++ ..|++|
T Consensus 1 mI~l~~vsK~~~~~---~~~~----------~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~L----e~PtsG-- 61 (339)
T COG1135 1 MIELENVSKTFGQT---GTGT----------VTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLL----ERPTSG-- 61 (339)
T ss_pred CeEEEeeeeeeccC---CCCc----------eeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhcc----CCCCCc--
Confidence 35677888877653 1111 3456677899999999999999999999999999999 999999
Q ss_pred eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccC--cCCccccC
Q psy16304 232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSAT--HLPLVDFR 309 (537)
Q Consensus 232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~--~l~~~~~~ 309 (537)
+|.++| .++.-++..+....| +.+|++||++.++...+. ++++...|+..+ .-+...+.
T Consensus 62 --~v~v~G-~di~~l~~~~Lr~~R----~~IGMIFQhFnLLssrTV------------~~NvA~PLeiag~~k~ei~~RV 122 (339)
T COG1135 62 --SVFVDG-QDLTALSEAELRQLR----QKIGMIFQHFNLLSSRTV------------FENVAFPLELAGVPKAEIKQRV 122 (339)
T ss_pred --eEEEcC-EecccCChHHHHHHH----hhccEEeccccccccchH------------HhhhhhhHhhcCCCHHHHHHHH
Confidence 999998 777766654444444 889999999998876554 334443333222 11112344
Q ss_pred CccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCch-----hhHHHHHHHHHhcCCEE
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGS-----EDFRTIWKQYLGTVSQT 382 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl-----~~~~~l~~~~~~~~~~v 382 (537)
...+.++|+++.. ..++.+|||||+||| ++|||++. + |++++.| |+.+ ..+..++.++.++-+.+
T Consensus 123 ~elLelVgL~dk~-~~yP~qLSGGQKQRV----aIARALa~-~--P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglT 194 (339)
T COG1135 123 AELLELVGLSDKA-DRYPAQLSGGQKQRV----AIARALAN-N--PKILLCDEATSALDPETTQSILELLKDINRELGLT 194 (339)
T ss_pred HHHHHHcCChhhh-ccCchhcCcchhhHH----HHHHHHhc-C--CCEEEecCccccCChHHHHHHHHHHHHHHHHcCCE
Confidence 5667799999775 666999999999999 99999996 4 8999999 9998 45555667888888888
Q ss_pred EEEEeCCCcchhhhhh--hhhhcCCcEEEEecccch
Q psy16304 383 LLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 383 IlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl 416 (537)
|+++ +|.++.....| +.+|+.|+++..|+..++
T Consensus 195 IvlI-THEm~Vvk~ic~rVavm~~G~lvE~G~v~~v 229 (339)
T COG1135 195 IVLI-THEMEVVKRICDRVAVLDQGRLVEEGTVSEV 229 (339)
T ss_pred EEEE-echHHHHHHHhhhheEeeCCEEEEeccHHHh
Confidence 8888 99999888766 999999999999998887
No 3
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.93 E-value=1.3e-27 Score=259.71 Aligned_cols=228 Identities=17% Similarity=0.119 Sum_probs=158.9
Q ss_pred hhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceee
Q psy16304 151 ILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF 230 (537)
Q Consensus 151 ~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~ 230 (537)
.++.+.++++.||...+..+ +++.+.+|++|||||+|||||||||++|+|. ..|+.|
T Consensus 2 ~~i~~~~ls~~~g~~~l~~~------------------~~l~~~~G~riGLvG~NGaGKSTLLkilaG~----~~~~~G- 58 (530)
T COG0488 2 SMITLENLSLAYGDRPLLEN------------------VSLTLNPGERIGLVGRNGAGKSTLLKILAGE----LEPDSG- 58 (530)
T ss_pred ceEEEeeeEEeeCCceeecC------------------CcceeCCCCEEEEECCCCCCHHHHHHHHcCC----CcCCCC-
Confidence 35678889998877766665 3466789999999999999999999999999 999999
Q ss_pred eeEEEEECCcEEEEEeecCCCchhh-HHHHhhhhccccCCCCCCCccceeeE-EeecCcccccCCcccccccCcCCcccc
Q psy16304 231 NRARVEYGNKYEVFLYDLGGSEDFR-TIWKQYLGTVSQTPLGRPDSRTCQVY-LIMCGVHQVSGIPDELTSATHLPLVDF 308 (537)
Q Consensus 231 t~~~i~i~g~~~i~~~D~~G~~~~r-~~~~~~i~~v~Q~~~l~~~~~~~il~-v~Ds~~~~~~~l~~~l~~~~~l~~~~~ 308 (537)
+|...++..+....+....... ......+.. +............+.. ..|.+...+..+...+..++.|...++
T Consensus 59 ---~i~~~~~~~v~~l~Q~~~~~~~~tv~~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~ 134 (530)
T COG0488 59 ---EVTRPKGLRVGYLSQEPPLDPEKTVLDYVIEG-FGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEAR 134 (530)
T ss_pred ---eEeecCCceEEEeCCCCCcCCCccHHHHHHhh-hHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHH
Confidence 9888876777776663221110 111100000 0000000000000000 000000111222333344455666667
Q ss_pred CCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHHHHH-HHHHhcCCEEEEE
Q psy16304 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRTIW-KQYLGTVSQTLLV 385 (537)
Q Consensus 309 ~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~l~-~~~~~~~~~vIlV 385 (537)
+...+..+|++.. ...+.+|||||+.|+ ++|++++. + |++++|| |+|++.....| +.|+....+++|+
T Consensus 135 ~~~~L~gLg~~~~--~~~~~~LSGG~r~Rv----~LA~aL~~-~--pDlLLLDEPTNHLD~~~i~WLe~~L~~~~gtvii 205 (530)
T COG0488 135 AEEALLGLGFPDE--DRPVSSLSGGWRRRV----ALARALLE-E--PDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIV 205 (530)
T ss_pred HHHHHhcCCCCcc--cCchhhcCHHHHHHH----HHHHHHhc-C--CCEEEEcCCCcccCHHHHHHHHHHHHhCCCcEEE
Confidence 7777788888876 566999999999999 99999996 4 8999999 99998888888 9999888888888
Q ss_pred EeCCCcchhhhhh--hhhhcCCcEEEEecccc
Q psy16304 386 SHSLSGRPDDRCQ--VYLMSCNCQVYLISAKN 415 (537)
Q Consensus 386 vdshd~~~~~~~~--i~ll~~G~ii~~g~nkd 415 (537)
+ |||+.+++.++ ++-++.|++..+.+|++
T Consensus 206 V-SHDR~FLd~V~t~I~~ld~g~l~~y~Gny~ 236 (530)
T COG0488 206 V-SHDRYFLDNVATHILELDRGKLTPYKGNYS 236 (530)
T ss_pred E-eCCHHHHHHHhhheEEecCCceeEecCCHH
Confidence 8 99999999988 77788999999999985
No 4
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.93 E-value=7.1e-27 Score=224.97 Aligned_cols=218 Identities=17% Similarity=0.161 Sum_probs=168.5
Q ss_pred hhhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304 150 GILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG 229 (537)
Q Consensus 150 ~~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G 229 (537)
+.++.++++.+.||++.+.++ +++.+.+|+..+++|++|+|||||++.|.|+ ..|++|
T Consensus 6 ~~~I~vr~v~~~fG~~~Ild~------------------v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gl----l~P~~G 63 (263)
T COG1127 6 EPLIEVRGVTKSFGDRVILDG------------------VDLDVPRGEILAILGGSGSGKSTLLRLILGL----LRPDKG 63 (263)
T ss_pred cceEEEeeeeeecCCEEEecC------------------ceeeecCCcEEEEECCCCcCHHHHHHHHhcc----CCCCCC
Confidence 457888999999888777766 4577889999999999999999999999999 999999
Q ss_pred eeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCcc---
Q psy16304 230 FNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLV--- 306 (537)
Q Consensus 230 ~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~--- 306 (537)
+|.++| .++.... +......++++|++||...+|..++. ++|+.-.+.....++..
T Consensus 64 ----eI~i~G-~~i~~ls----~~~~~~ir~r~GvlFQ~gALFssltV------------~eNVafplre~~~lp~~~i~ 122 (263)
T COG1127 64 ----EILIDG-EDIPQLS----EEELYEIRKRMGVLFQQGALFSSLTV------------FENVAFPLREHTKLPESLIR 122 (263)
T ss_pred ----eEEEcC-cchhccC----HHHHHHHHhheeEEeeccccccccch------------hHhhheehHhhccCCHHHHH
Confidence 999987 4443222 12233456889999999998876665 34444333222222211
Q ss_pred ccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCch-----hhHHHHHHHHHhcC
Q psy16304 307 DFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGS-----EDFRTIWKQYLGTV 379 (537)
Q Consensus 307 ~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl-----~~~~~l~~~~~~~~ 379 (537)
..+..++..+|+.+..-..++.+|||||+.|+ ++|||+.. + |+++++| |+|+ ..+..++..+.+.-
T Consensus 123 ~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRv----aLARAial-d--Pell~~DEPtsGLDPI~a~~~~~LI~~L~~~l 195 (263)
T COG1127 123 ELVLMKLELVGLRGAAADLYPSELSGGMRKRV----ALARAIAL-D--PELLFLDEPTSGLDPISAGVIDELIRELNDAL 195 (263)
T ss_pred HHHHHHHHhcCCChhhhhhCchhhcchHHHHH----HHHHHHhc-C--CCEEEecCCCCCCCcchHHHHHHHHHHHHHhh
Confidence 12235567899998855788999999999999 99999997 6 8999999 9999 34445556666667
Q ss_pred CEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchhh
Q psy16304 380 SQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLSN 418 (537)
Q Consensus 380 ~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~~ 418 (537)
..+++++ +||..+...++ ++++.+|+++..|++.++.+
T Consensus 196 g~T~i~V-THDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 196 GLTVIMV-THDLDSLLTIADRVAVLADGKVIAEGTPEELLA 235 (263)
T ss_pred CCEEEEE-ECChHHHHhhhceEEEEeCCEEEEeCCHHHHHh
Confidence 7788888 89999888765 99999999999999998743
No 5
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.92 E-value=5.4e-26 Score=220.03 Aligned_cols=212 Identities=15% Similarity=0.153 Sum_probs=156.1
Q ss_pred hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304 152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN 231 (537)
Q Consensus 152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t 231 (537)
++.+++++|.|+..... .+++|.+.+|+.+++|||+||||||+|++|.+. +.||+|
T Consensus 1 MI~~~nvsk~y~~~~av------------------~~v~l~I~~gef~vliGpSGsGKTTtLkMINrL----iept~G-- 56 (309)
T COG1125 1 MIEFENVSKRYGNKKAV------------------DDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRL----IEPTSG-- 56 (309)
T ss_pred CceeeeeehhcCCceee------------------eeeeEEecCCeEEEEECCCCCcHHHHHHHHhcc----cCCCCc--
Confidence 46778899988744433 445688999999999999999999999999999 999999
Q ss_pred eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC---cccc
Q psy16304 232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDF 308 (537)
Q Consensus 232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~ 308 (537)
+|.++| .++..+|. .++| +.+|||-|...+|++++.. +++.-.. .+.+|. ...+
T Consensus 57 --~I~i~g-~~i~~~d~---~~LR----r~IGYviQqigLFPh~Tv~------------eNIa~VP-~L~~w~k~~i~~r 113 (309)
T COG1125 57 --EILIDG-EDISDLDP---VELR----RKIGYVIQQIGLFPHLTVA------------ENIATVP-KLLGWDKERIKKR 113 (309)
T ss_pred --eEEECC-eecccCCH---HHHH----HhhhhhhhhcccCCCccHH------------HHHHhhh-hhcCCCHHHHHHH
Confidence 999997 77766665 3444 8899999999999987761 1111100 112221 2234
Q ss_pred CCccEEEeccCc-cCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH-HHH----HHHHhcCC
Q psy16304 309 RSVPILVLGLDN-AGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR-TIW----KQYLGTVS 380 (537)
Q Consensus 309 ~~~~L~llGl~~-~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~-~l~----~~~~~~~~ 380 (537)
....+.++|++. .-..+++++|||||+||+ |++||+.. + |+++++| .+.++.+. ..+ ..+-++.+
T Consensus 114 ~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRV----Gv~RALAa-d--P~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~ 186 (309)
T COG1125 114 ADELLDLVGLDPSEYADRYPHELSGGQQQRV----GVARALAA-D--PPILLMDEPFGALDPITRKQLQEEIKELQKELG 186 (309)
T ss_pred HHHHHHHhCCCHHHHhhcCchhcCcchhhHH----HHHHHHhc-C--CCeEeecCCccccChhhHHHHHHHHHHHHHHhC
Confidence 556677889864 356888999999999999 99999996 5 8999999 55553322 222 23333445
Q ss_pred EEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchhh
Q psy16304 381 QTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLSN 418 (537)
Q Consensus 381 ~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~~ 418 (537)
.+++.+ +||++++..+. +.+|+.|+++.+++|.++..
T Consensus 187 kTivfV-THDidEA~kLadri~vm~~G~i~Q~~~P~~il~ 225 (309)
T COG1125 187 KTIVFV-THDIDEALKLADRIAVMDAGEIVQYDTPDEILA 225 (309)
T ss_pred CEEEEE-ecCHHHHHhhhceEEEecCCeEEEeCCHHHHHh
Confidence 556666 78887776654 99999999999999998743
No 6
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.91 E-value=7.7e-26 Score=233.02 Aligned_cols=209 Identities=16% Similarity=0.151 Sum_probs=156.7
Q ss_pred hhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceee
Q psy16304 151 ILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF 230 (537)
Q Consensus 151 ~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~ 230 (537)
..+.++++.|.||+..... ++++.+.+|+++.|+||+||||||||++|+|. ..|++|
T Consensus 4 ~~l~i~~v~k~yg~~~av~------------------~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGf----e~p~~G- 60 (352)
T COG3842 4 PALEIRNVSKSFGDFTAVD------------------DISLDIKKGEFVTLLGPSGCGKTTLLRMIAGF----EQPSSG- 60 (352)
T ss_pred ceEEEEeeeeecCCeeEEe------------------cceeeecCCcEEEEECCCCCCHHHHHHHHhCC----CCCCCc-
Confidence 4677888999888444333 35688899999999999999999999999999 999999
Q ss_pred eeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCc---cc
Q psy16304 231 NRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPL---VD 307 (537)
Q Consensus 231 t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~---~~ 307 (537)
+|.++| .++.. ....+ +.+++|||+..+|++++. .+++..-|........ ..
T Consensus 61 ---~I~l~G-~~i~~-----lpp~k----R~ig~VFQ~YALFPHltV------------~~NVafGLk~~~~~~~~~i~~ 115 (352)
T COG3842 61 ---EILLDG-EDITD-----VPPEK----RPIGMVFQSYALFPHMTV------------EENVAFGLKVRKKLKKAEIKA 115 (352)
T ss_pred ---eEEECC-EECCC-----CChhh----cccceeecCcccCCCCcH------------HHHhhhhhhhcCCCCHHHHHH
Confidence 999987 44432 33333 789999999999999887 4555544442221211 12
Q ss_pred cCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchh-----hHHHHHHHHHhcCC
Q psy16304 308 FRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSE-----DFRTIWKQYLGTVS 380 (537)
Q Consensus 308 ~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~-----~~~~l~~~~~~~~~ 380 (537)
+....+.++|+.+.++ +.+.+|||||+||+ ++||+++. + |++++|| .+.++ ..+..++.+.++.+
T Consensus 116 rv~e~L~lV~L~~~~~-R~p~qLSGGQqQRV----ALARAL~~-~--P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~g 187 (352)
T COG3842 116 RVEEALELVGLEGFAD-RKPHQLSGGQQQRV----ALARALVP-E--PKVLLLDEPLSALDAKLREQMRKELKELQRELG 187 (352)
T ss_pred HHHHHHHHcCchhhhh-hChhhhChHHHHHH----HHHHHhhc-C--cchhhhcCcccchhHHHHHHHHHHHHHHHHhcC
Confidence 4456677899998875 44999999999999 99999995 4 8999999 66662 22223344445555
Q ss_pred EEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccch
Q psy16304 381 QTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 381 ~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl 416 (537)
.+.+.+ +||.+++.... +.+|++|++...|++.++
T Consensus 188 iT~i~V-THDqeEAl~msDrI~Vm~~G~I~Q~gtP~ei 224 (352)
T COG3842 188 ITFVYV-THDQEEALAMSDRIAVMNDGRIEQVGTPEEI 224 (352)
T ss_pred CeEEEE-ECCHHHHhhhccceEEccCCceeecCCHHHH
Confidence 555555 78887776554 999999999999999987
No 7
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.91 E-value=9.8e-26 Score=218.96 Aligned_cols=207 Identities=15% Similarity=0.130 Sum_probs=147.5
Q ss_pred ccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeE
Q psy16304 154 GIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA 233 (537)
Q Consensus 154 ~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~ 233 (537)
.++++.|.|+..... +.+-..++|.+++|++++|+||+||||||||++|.|. ..||+|
T Consensus 3 ~~~~v~k~y~~~~~~--------------~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~l----d~pt~G---- 60 (226)
T COG1136 3 ELKNVSKIYGLGGEK--------------VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGL----DKPTSG---- 60 (226)
T ss_pred EEeeeEEEeccCCcc--------------eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcc----cCCCCc----
Confidence 466777766543211 1233456788899999999999999999999999999 999999
Q ss_pred EEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcC--CccccCCc
Q psy16304 234 RVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHL--PLVDFRSV 311 (537)
Q Consensus 234 ~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l--~~~~~~~~ 311 (537)
.+.++| .++...+. .......++.+|+|||++.+++.++. .+++.-.+...... ........
T Consensus 61 ~v~i~g-~d~~~l~~---~~~~~~R~~~iGfvFQ~~nLl~~ltv------------~ENv~lpl~~~~~~~~~~~~~~~~ 124 (226)
T COG1136 61 EVLING-KDLTKLSE---KELAKLRRKKIGFVFQNFNLLPDLTV------------LENVELPLLIAGKSAGRRKRAAEE 124 (226)
T ss_pred eEEECC-EEcCcCCH---HHHHHHHHHhEEEECccCCCCCCCCH------------HHHHHhHHHHcCCChhHHHHHHHH
Confidence 888887 55544332 23334556889999999998887666 22222111111111 11122334
Q ss_pred cEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCch-----hhHHHHHHHHHhcCCEEEE
Q psy16304 312 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGS-----EDFRTIWKQYLGTVSQTLL 384 (537)
Q Consensus 312 ~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl-----~~~~~l~~~~~~~~~~vIl 384 (537)
.+..+|+.+..+...+.+|||||+||+ ++|||++. + |++++.| |+.+ +....++..+.++.+.+++
T Consensus 125 l~~~lgl~~~~~~~~p~eLSGGqqQRV----AIARAL~~-~--P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii 197 (226)
T COG1136 125 LLEVLGLEDRLLKKKPSELSGGQQQRV----AIARALIN-N--PKIILADEPTGNLDSKTAKEVLELLRELNKERGKTII 197 (226)
T ss_pred HHHhcCChhhhccCCchhcCHHHHHHH----HHHHHHhc-C--CCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEE
Confidence 455788887766577999999999999 99999996 5 8999999 8777 3333444566666667888
Q ss_pred EEeCCCcchhhhhh-hhhhcCCc
Q psy16304 385 VSHSLSGRPDDRCQ-VYLMSCNC 406 (537)
Q Consensus 385 Vvdshd~~~~~~~~-i~ll~~G~ 406 (537)
++ |||...+..++ ++.+.+|+
T Consensus 198 ~V-THd~~lA~~~dr~i~l~dG~ 219 (226)
T COG1136 198 MV-THDPELAKYADRVIELKDGK 219 (226)
T ss_pred EE-cCCHHHHHhCCEEEEEeCCe
Confidence 88 89999888777 88888888
No 8
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.90 E-value=6.5e-25 Score=224.20 Aligned_cols=208 Identities=18% Similarity=0.230 Sum_probs=152.1
Q ss_pred hcccccCCCcccC-CCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceee
Q psy16304 152 LMGIQNVPNFQTS-SVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF 230 (537)
Q Consensus 152 li~~~~l~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~ 230 (537)
.+.++++.|.|+. ..+. +++++.+.+|+++||+||||||||||+++|+|. ..|++|
T Consensus 4 ~i~~~~l~k~~~~~~~~l------------------~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl----~~p~~G- 60 (293)
T COG1131 4 VIEVRNLTKKYGGDKTAL------------------DGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGL----LKPTSG- 60 (293)
T ss_pred eeeecceEEEeCCCCEEE------------------eceeEEEcCCeEEEEECCCCCCHHHHHHHHhCC----cCCCce-
Confidence 3456788888773 3333 346688889999999999999999999999999 999999
Q ss_pred eeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCc-----
Q psy16304 231 NRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPL----- 305 (537)
Q Consensus 231 t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~----- 305 (537)
+|.+.| .++. . . ...++..+|+++|++.+++.++. .+.+..+..+..
T Consensus 61 ---~i~i~G-~~~~-----~--~-~~~~~~~igy~~~~~~~~~~lT~----------------~e~l~~~~~l~~~~~~~ 112 (293)
T COG1131 61 ---EILVLG-YDVV-----K--E-PAKVRRRIGYVPQEPSLYPELTV----------------RENLEFFARLYGLSKEE 112 (293)
T ss_pred ---EEEEcC-EeCc-----c--C-HHHHHhheEEEccCCCCCccccH----------------HHHHHHHHHHhCCChhH
Confidence 888887 3221 1 1 23344789999999997776665 233333222211
Q ss_pred -cccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchh--hHHHHH---HHHHh
Q psy16304 306 -VDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSE--DFRTIW---KQYLG 377 (537)
Q Consensus 306 -~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~--~~~~l~---~~~~~ 377 (537)
..+....+..+|+.... ...+..||+||+||+ +++.++++ + |++++|| |+|++ ....+| +.+.+
T Consensus 113 ~~~~~~~~l~~~~L~~~~-~~~~~~lS~G~kqrl----~ia~aL~~-~--P~lliLDEPt~GLDp~~~~~~~~~l~~l~~ 184 (293)
T COG1131 113 AEERIEELLELFGLEDKA-NKKVRTLSGGMKQRL----SIALALLH-D--PELLILDEPTSGLDPESRREIWELLRELAK 184 (293)
T ss_pred HHHHHHHHHHHcCCchhh-CcchhhcCHHHHHHH----HHHHHHhc-C--CCEEEECCCCcCCCHHHHHHHHHHHHHHHh
Confidence 12344566688888744 556999999999999 99999997 5 8999999 99993 223333 45555
Q ss_pred cCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchhhh
Q psy16304 378 TVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLSNG 419 (537)
Q Consensus 378 ~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~~~ 419 (537)
+++.+|+++ +|..++.+..+ +.++++|+++..+...++...
T Consensus 185 ~g~~tvlis-sH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 185 EGGVTILLS-THILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred CCCcEEEEe-CCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 544566666 99999888744 999999999999977776544
No 9
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.90 E-value=1.5e-24 Score=201.89 Aligned_cols=209 Identities=19% Similarity=0.178 Sum_probs=154.7
Q ss_pred hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304 152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN 231 (537)
Q Consensus 152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t 231 (537)
++.+++++|.|+.+... -..+++.+.+|+++-|+||+|||||||+|+|.+. ..||.|
T Consensus 1 mI~f~~V~k~Y~~g~~a-----------------L~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~----e~pt~G-- 57 (223)
T COG2884 1 MIRFENVSKAYPGGREA-----------------LRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGE----ERPTRG-- 57 (223)
T ss_pred CeeehhhhhhcCCCchh-----------------hhCceEeecCceEEEEECCCCCCHHHHHHHHHhh----hcCCCc--
Confidence 35678889988766311 2235677889999999999999999999999999 999999
Q ss_pred eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCc--cccC
Q psy16304 232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPL--VDFR 309 (537)
Q Consensus 232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~--~~~~ 309 (537)
++.++| .++.-+.-... +..++.+|.|||+..++.+.+. ++++.-.+...+.-+. ..+.
T Consensus 58 --~i~~~~-~dl~~l~~~~i----P~LRR~IGvVFQD~rLL~~~tv------------yeNVA~pL~v~G~~~~~i~~rV 118 (223)
T COG2884 58 --KILVNG-HDLSRLKGREI----PFLRRQIGVVFQDFRLLPDRTV------------YENVALPLRVIGKPPREIRRRV 118 (223)
T ss_pred --eEEECC-eeccccccccc----chhhheeeeEeeeccccccchH------------hhhhhhhhhccCCCHHHHHHHH
Confidence 999987 66655443222 3455899999999998877665 5555554544432221 1233
Q ss_pred CccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCch-----hhHHHHHHHHHhcCCEE
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGS-----EDFRTIWKQYLGTVSQT 382 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl-----~~~~~l~~~~~~~~~~v 382 (537)
...+..+|+.+.. ..++.+||||++||+ ++|+|+++ . |++++-| |..+ ..+..+++.+.+. .++
T Consensus 119 ~~~L~~VgL~~k~-~~lP~~LSGGEQQRv----aIARAiV~-~--P~vLlADEPTGNLDp~~s~~im~lfeeinr~-GtT 189 (223)
T COG2884 119 SEVLDLVGLKHKA-RALPSQLSGGEQQRV----AIARAIVN-Q--PAVLLADEPTGNLDPDLSWEIMRLFEEINRL-GTT 189 (223)
T ss_pred HHHHHHhccchhh-hcCccccCchHHHHH----HHHHHHcc-C--CCeEeecCCCCCCChHHHHHHHHHHHHHhhc-CcE
Confidence 4567789998876 667999999999999 99999996 4 8999999 7666 3334444555444 456
Q ss_pred EEEEeCCCcchhhhhh--hhhhcCCcEEEEec
Q psy16304 383 LLVSHSLSGRPDDRCQ--VYLMSCNCQVYLIS 412 (537)
Q Consensus 383 IlVvdshd~~~~~~~~--i~ll~~G~ii~~g~ 412 (537)
+++. +||....+... +..+++|+++.+..
T Consensus 190 Vl~A-THd~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 190 VLMA-THDLELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred EEEE-eccHHHHHhccCcEEEEeCCEEEeccc
Confidence 6666 89988887766 88889999876543
No 10
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.90 E-value=9.1e-25 Score=216.17 Aligned_cols=212 Identities=15% Similarity=0.143 Sum_probs=147.7
Q ss_pred cccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeee
Q psy16304 153 MGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNR 232 (537)
Q Consensus 153 i~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~ 232 (537)
+.+++++..|++..+.. +++|.+.+|++++|+||||||||||||+|+|. ..|..|
T Consensus 3 L~~~~ls~~y~~~~il~------------------~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~----l~p~~G--- 57 (258)
T COG1120 3 LEVENLSFGYGGKPILD------------------DLSFSIPKGEITGILGPNGSGKSTLLKCLAGL----LKPKSG--- 57 (258)
T ss_pred eEEEEEEEEECCeeEEe------------------cceEEecCCcEEEEECCCCCCHHHHHHHHhcc----CCCCCC---
Confidence 45666777666444333 45677889999999999999999999999999 999999
Q ss_pred EEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEee-cCcccccCCcccccccCcCCcc--ccC
Q psy16304 233 ARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLV--DFR 309 (537)
Q Consensus 233 ~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~--~~~ 309 (537)
+|.++| ..+.-+.. ....+.+++|+|.+. ...-+.|.| ....++. ...++..+... ...
T Consensus 58 -~V~l~g-~~i~~~~~-------kelAk~ia~vpQ~~~-----~~~~~tV~d~V~~GR~p----~~~~~~~~~~~D~~~v 119 (258)
T COG1120 58 -EVLLDG-KDIASLSP-------KELAKKLAYVPQSPS-----APFGLTVYELVLLGRYP----HLGLFGRPSKEDEEIV 119 (258)
T ss_pred -EEEECC-CchhhcCH-------HHHhhhEEEeccCCC-----CCCCcEEeehHhhcCCc----ccccccCCCHhHHHHH
Confidence 999997 55443332 223378999999976 333444555 2222221 11222211111 122
Q ss_pred CccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchh-----hHHHHHHHHHhcCCEE
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSE-----DFRTIWKQYLGTVSQT 382 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~-----~~~~l~~~~~~~~~~v 382 (537)
...+..+|+.+.. .+.+.+|||||+||+ .+|+++++ + |++++|| |++++ +..++.+++.++.+.+
T Consensus 120 ~~aL~~~~~~~la-~r~~~~LSGGerQrv----~iArALaQ-~--~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~t 191 (258)
T COG1120 120 EEALELLGLEHLA-DRPVDELSGGERQRV----LIARALAQ-E--TPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLT 191 (258)
T ss_pred HHHHHHhCcHHHh-cCcccccChhHHHHH----HHHHHHhc-C--CCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCE
Confidence 3345677877765 445999999999999 99999996 4 8999999 88883 3444556666565555
Q ss_pred EEEEeCCCcchhhhh--hhhhhcCCcEEEEecccch
Q psy16304 383 LLVSHSLSGRPDDRC--QVYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 383 IlVvdshd~~~~~~~--~i~ll~~G~ii~~g~nkdl 416 (537)
++++ .||...+... .+++|++|++++.|++++.
T Consensus 192 vv~v-lHDlN~A~ryad~~i~lk~G~i~a~G~p~ev 226 (258)
T COG1120 192 VVMV-LHDLNLAARYADHLILLKDGKIVAQGTPEEV 226 (258)
T ss_pred EEEE-ecCHHHHHHhCCEEEEEECCeEEeecCcchh
Confidence 6666 6777655443 3999999999999999876
No 11
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.90 E-value=1.4e-24 Score=215.42 Aligned_cols=211 Identities=17% Similarity=0.168 Sum_probs=151.5
Q ss_pred hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304 152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN 231 (537)
Q Consensus 152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t 231 (537)
++.+++.++.|+...... .+++.++.|+.++|+|||||||||||++|+|+ ..|+.|
T Consensus 2 ~i~i~~~~~~~~~~~a~~------------------di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGL----e~p~~G-- 57 (345)
T COG1118 2 SIRINNVKKRFGAFGALD------------------DISLDIKSGELVALLGPSGAGKSTLLRIIAGL----ETPDAG-- 57 (345)
T ss_pred ceeehhhhhhcccccccc------------------cceeeecCCcEEEEECCCCCcHHHHHHHHhCc----CCCCCc--
Confidence 355667777666554443 34566889999999999999999999999999 999999
Q ss_pred eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCc----CCccc
Q psy16304 232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATH----LPLVD 307 (537)
Q Consensus 232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~----l~~~~ 307 (537)
.|.++| .. +.|... .....+.+|+|||+..+|+.++. .+++..-+..... .+...
T Consensus 58 --~I~~~~-~~--l~D~~~----~~~~~R~VGfvFQ~YALF~HmtV------------a~NIAFGl~~~~~~p~~~~~r~ 116 (345)
T COG1118 58 --RIRLNG-RV--LFDVSN----LAVRDRKVGFVFQHYALFPHMTV------------ADNIAFGLKVRKERPSEAEIRA 116 (345)
T ss_pred --eEEECC-Ee--ccchhc----cchhhcceeEEEechhhcccchH------------HhhhhhcccccccCCChhhHHH
Confidence 999988 21 123321 13334789999999999998776 2333332222211 11112
Q ss_pred cCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCch----h-hHHHHHHHHHhcCC
Q psy16304 308 FRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGS----E-DFRTIWKQYLGTVS 380 (537)
Q Consensus 308 ~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl----~-~~~~l~~~~~~~~~ 380 (537)
+....+..+.+.+.+ ..++.+|||||+||+ ++|+++.. . |++++|| .+.+ . ..+..++++....+
T Consensus 117 rv~elL~lvqL~~la-~ryP~QLSGGQrQRV----ALARALA~-e--P~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~ 188 (345)
T COG1118 117 RVEELLRLVQLEGLA-DRYPAQLSGGQRQRV----ALARALAV-E--PKVLLLDEPFGALDAKVRKELRRWLRKLHDRLG 188 (345)
T ss_pred HHHHHHHHhcccchh-hcCchhcChHHHHHH----HHHHHhhc-C--CCeEeecCCchhhhHHHHHHHHHHHHHHHHhhC
Confidence 334446677788887 455999999999999 99999996 4 8999999 4445 2 22223356666666
Q ss_pred EEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccch
Q psy16304 381 QTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 381 ~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl 416 (537)
.+.+.+ +||.++..... +++|++|+|...|++.+.
T Consensus 189 ~ttvfV-THD~eea~~ladrvvvl~~G~Ieqvg~p~ev 225 (345)
T COG1118 189 VTTVFV-THDQEEALELADRVVVLNQGRIEQVGPPDEV 225 (345)
T ss_pred ceEEEE-eCCHHHHHhhcceEEEecCCeeeeeCCHHHH
Confidence 777777 89988887655 999999999999999887
No 12
>KOG0058|consensus
Probab=99.89 E-value=1.6e-24 Score=235.71 Aligned_cols=261 Identities=14% Similarity=0.080 Sum_probs=193.2
Q ss_pred hHHHHHhhhcccccccccccccccCccccccccCCCCC--CchhHHHHHHHHHHHHhhhcccccCCCcccCCCCCCCCCc
Q psy16304 96 IWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPA--PTFEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDDPAP 173 (537)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~~~~~~ 173 (537)
..++..|+..+..+-.+.++-+++|++++-++.++... -|... .-.+.++|++..|+++. .
T Consensus 418 g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~G~~~p~~~-----------~G~IeF~~VsFaYP~Rp-----~- 480 (716)
T KOG0058|consen 418 GSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLTGTLAPDHL-----------QGVIEFEDVSFAYPTRP-----D- 480 (716)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCCCccccccc-----------cceEEEEEeeeecCCCC-----C-
Confidence 46888999999999999999999999999776654331 11122 34667788888776552 1
Q ss_pred chhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCch
Q psy16304 174 TFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSED 253 (537)
Q Consensus 174 ~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~ 253 (537)
+.+-++++|++++|++++||||+|+||||+.++|... |.|++| +|.+|| +++..+|-
T Consensus 481 ---------~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rf----Y~PtsG----~IllDG-~~i~~~~~----- 537 (716)
T KOG0058|consen 481 ---------VPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRF----YDPTSG----RILLDG-VPISDINH----- 537 (716)
T ss_pred ---------chhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHh----cCCCCC----eEEECC-eehhhcCH-----
Confidence 2234456788889999999999999999999999999 999999 999997 77765554
Q ss_pred hhHHHHhhhhccccCCCCCCC-ccceeeEEee-cCcccccCCccc---ccccCcCCccccCCccEEEeccCccCccchhh
Q psy16304 254 FRTIWKQYLGTVSQTPLGRPD-SRTCQVYLIM-CGVHQVSGIPDE---LTSATHLPLVDFRSVPILVLGLDNAGKSSIIK 328 (537)
Q Consensus 254 ~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~D-s~~~~~~~l~~~---l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~ 328 (537)
..+++.+|.|.|+|.+|.. ..++|.+..+ .+.++...+.+. .+++.+++..... .+|..+.
T Consensus 538 --~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T-----~VGEkG~------- 603 (716)
T KOG0058|consen 538 --KYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNT-----VVGEKGS------- 603 (716)
T ss_pred --HHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccc-----ccCCccc-------
Confidence 3455899999999999987 7788888777 333333222211 1222333222222 4554433
Q ss_pred hhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHHHHH-H-HHHhc-CCEEEEEEeCCCcchhhhhh-hhhh
Q psy16304 329 RILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRTIW-K-QYLGT-VSQTLLVSHSLSGRPDDRCQ-VYLM 402 (537)
Q Consensus 329 ~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~l~-~-~~~~~-~~~vIlVvdshd~~~~~~~~-i~ll 402 (537)
+||||||||+ ++|||++. + |.++||| |+.++...+.. + .+.+. .+-+++|+ .|...+....+ ++++
T Consensus 604 qLSGGQKQRI----AIARALlr-~--P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvI-AHRLSTV~~Ad~Ivvi 675 (716)
T KOG0058|consen 604 QLSGGQKQRI----AIARALLR-N--PRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVI-AHRLSTVRHADQIVVI 675 (716)
T ss_pred cccchHHHHH----HHHHHHhc-C--CCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEE-ehhhhHhhhccEEEEE
Confidence 4999999999 99999996 4 8999999 99996665544 3 33222 23578888 89999999877 9999
Q ss_pred cCCcEEEEecccchhh
Q psy16304 403 SCNCQVYLISAKNLSN 418 (537)
Q Consensus 403 ~~G~ii~~g~nkdl~~ 418 (537)
++|++...|+.+++.+
T Consensus 676 ~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 676 DKGRVVEMGTHDELLS 691 (716)
T ss_pred cCCeEEecccHHHHhh
Confidence 9999999999988854
No 13
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=1.4e-24 Score=211.40 Aligned_cols=194 Identities=17% Similarity=0.143 Sum_probs=135.0
Q ss_pred hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304 152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN 231 (537)
Q Consensus 152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t 231 (537)
++.++++.+.|+...+ -.+++|.+.+||+++||||+|||||||||+|+|. ..|+.|
T Consensus 3 ~l~i~~v~~~f~~~~v------------------l~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL----~~p~~G-- 58 (248)
T COG1116 3 LLEIEGVSKSFGGVEV------------------LEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGL----EKPTSG-- 58 (248)
T ss_pred eEEEEeeEEEeCceEE------------------eccceeEECCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCc--
Confidence 4566777777766322 2345677889999999999999999999999999 999999
Q ss_pred eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccC--cCCccccC
Q psy16304 232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSAT--HLPLVDFR 309 (537)
Q Consensus 232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~--~l~~~~~~ 309 (537)
+|.++| ..+ .-+ . ..+++|||+..+++..+. .+|+.-.+.... .-+...++
T Consensus 59 --~V~~~g-~~v---~~p-----~----~~~~~vFQ~~~LlPW~Tv------------~~NV~l~l~~~~~~~~e~~~~a 111 (248)
T COG1116 59 --EVLLDG-RPV---TGP-----G----PDIGYVFQEDALLPWLTV------------LDNVALGLELRGKSKAEARERA 111 (248)
T ss_pred --eEEECC-ccc---CCC-----C----CCEEEEeccCcccchhhH------------HhhheehhhccccchHhHHHHH
Confidence 999887 222 111 1 358999999999988665 333333222221 11112234
Q ss_pred CccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHHH-----HHHHHHhcCCEE
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRT-----IWKQYLGTVSQT 382 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~-----l~~~~~~~~~~v 382 (537)
...+..+|+.+.. ..++.+|||||+||+ ++|++++. + |++++|| .+.++.... .+.++.++.+.+
T Consensus 112 ~~~L~~VgL~~~~-~~~P~qLSGGMrQRV----aiARAL~~-~--P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~T 183 (248)
T COG1116 112 KELLELVGLAGFE-DKYPHQLSGGMRQRV----AIARALAT-R--PKLLLLDEPFGALDALTREELQDELLRLWEETRKT 183 (248)
T ss_pred HHHHHHcCCcchh-hcCccccChHHHHHH----HHHHHHhc-C--CCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCE
Confidence 5567789999887 566999999999999 99999997 5 8999999 666633322 122333444455
Q ss_pred EEEEeCCCcchhhhhh--hhhhcCC
Q psy16304 383 LLVSHSLSGRPDDRCQ--VYLMSCN 405 (537)
Q Consensus 383 IlVvdshd~~~~~~~~--i~ll~~G 405 (537)
++++ |||.+++-.+. +++|.++
T Consensus 184 vllV-THdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 184 VLLV-THDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred EEEE-eCCHHHHHhhhCEEEEecCC
Confidence 5555 67777666544 7777763
No 14
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.89 E-value=4.2e-24 Score=206.60 Aligned_cols=219 Identities=13% Similarity=0.084 Sum_probs=156.0
Q ss_pred hhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceee
Q psy16304 151 ILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF 230 (537)
Q Consensus 151 ~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~ 230 (537)
.++.++|+++.|+...... .+.+++++.+.+|+++||+|++|+|||||.++|+|. ..|+.|
T Consensus 2 ~~l~v~nl~~~y~~~~~~~--------------~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl----~~p~~G- 62 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAF--------------HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGL----EKPSSG- 62 (252)
T ss_pred ceEEEeceEEEecCCcchh--------------hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcc----cCCCCc-
Confidence 3678899999887765332 234567788999999999999999999999999999 999999
Q ss_pred eeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCC--CccceeeEEeecCcccccCCcccccccCcCC-ccc
Q psy16304 231 NRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP--DSRTCQVYLIMCGVHQVSGIPDELTSATHLP-LVD 307 (537)
Q Consensus 231 t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~--~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~-~~~ 307 (537)
+|.++| ..+. ...+. ....+.+.+|||++.-.. ..+. .+.+.+.+.. ..+. ...
T Consensus 63 ---~I~~~G-~~~~-----~~~~~-~~~~~~VQmVFQDp~~SLnP~~tv------------~~~l~Epl~~-~~~~~~~~ 119 (252)
T COG1124 63 ---SILLDG-KPLA-----PKKRA-KAFYRPVQMVFQDPYSSLNPRRTV------------GRILSEPLRP-HGLSKSQQ 119 (252)
T ss_pred ---eEEECC-cccC-----ccccc-hhhccceeEEecCCccccCcchhH------------HHHHhhhhcc-CCccHHHH
Confidence 999887 2221 11111 123367899999987221 1111 0001111111 1111 111
Q ss_pred cCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhh-----HHHHHHHHHhcCC
Q psy16304 308 FRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSED-----FRTIWKQYLGTVS 380 (537)
Q Consensus 308 ~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~-----~~~l~~~~~~~~~ 380 (537)
+....+..+|++..-..+++++|||||+||+ ++|+|+.. + |+++++| |+.++. +.+++.++.++.+
T Consensus 120 ~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRi----aIARAL~~-~--PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~ 192 (252)
T COG1124 120 RIAELLDQVGLPPSFLDRRPHELSGGQRQRI----AIARALIP-E--PKLLILDEPTSALDVSVQAQILNLLLELKKERG 192 (252)
T ss_pred HHHHHHHHcCCCHHHHhcCchhcChhHHHHH----HHHHHhcc-C--CCEEEecCchhhhcHHHHHHHHHHHHHHHHhcC
Confidence 2344566889988888888999999999999 99999995 4 8999999 888833 2333355556777
Q ss_pred EEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchhhh
Q psy16304 381 QTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLSNG 419 (537)
Q Consensus 381 ~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~~~ 419 (537)
.+++++ +||....+..| +++|++|+++..+...++.+.
T Consensus 193 lt~l~I-sHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~ 232 (252)
T COG1124 193 LTYLFI-SHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232 (252)
T ss_pred ceEEEE-eCcHHHHHHHhhheeeeeCCeEEEeechhhhhcC
Confidence 788888 89999888766 999999999999888887543
No 15
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.89 E-value=3.8e-24 Score=219.42 Aligned_cols=209 Identities=18% Similarity=0.104 Sum_probs=151.5
Q ss_pred hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304 152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN 231 (537)
Q Consensus 152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t 231 (537)
.+.++++.|.||+..+.. .+++.+..|++++|+|||||||||||++|+|+ ..|++|
T Consensus 3 ~i~l~~v~K~yg~~~~l~------------------~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGL----e~~~~G-- 58 (338)
T COG3839 3 ELELKNVRKSFGSFEVLK------------------DVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGL----EEPTSG-- 58 (338)
T ss_pred EEEEeeeEEEcCCceeee------------------cceEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCc--
Confidence 467788899888653222 24577889999999999999999999999999 999999
Q ss_pred eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcC--CccccC
Q psy16304 232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHL--PLVDFR 309 (537)
Q Consensus 232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l--~~~~~~ 309 (537)
+|.++| .++..+ . -.++.+++|||+..+|+.++. ++++...+.....- +...+.
T Consensus 59 --~I~i~g-~~vt~l-----~----P~~R~iamVFQ~yALyPhmtV------------~~Niaf~Lk~~~~~k~ei~~rV 114 (338)
T COG3839 59 --EILIDG-RDVTDL-----P----PEKRGIAMVFQNYALYPHMTV------------YENIAFGLKLRGVPKAEIDKRV 114 (338)
T ss_pred --eEEECC-EECCCC-----C----hhHCCEEEEeCCccccCCCcH------------HHHhhhhhhhCCCchHHHHHHH
Confidence 999987 444321 1 223779999999999999887 44444333322111 111233
Q ss_pred CccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchh-----hHHHHHHHHHhcCCEE
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSE-----DFRTIWKQYLGTVSQT 382 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~-----~~~~l~~~~~~~~~~v 382 (537)
......+++.+..+. .+.+|||||+||+ +++|+++. + |+++++| .+.++ ..+..+..+.++.+.+
T Consensus 115 ~eva~~L~l~~lL~r-~P~~LSGGQrQRV----AlaRAlVr-~--P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T 186 (338)
T COG3839 115 KEVAKLLGLEHLLNR-KPLQLSGGQRQRV----ALARALVR-K--PKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTT 186 (338)
T ss_pred HHHHHHcCChhHHhc-CcccCChhhHHHH----HHHHHHhc-C--CCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCc
Confidence 344557888888744 4999999999999 99999996 4 8999999 66672 2222333444444555
Q ss_pred EEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchh
Q psy16304 383 LLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLS 417 (537)
Q Consensus 383 IlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~ 417 (537)
++.+ +||..++.... +.+|.+|++...|++.++-
T Consensus 187 ~IYV-THDq~EAmtladri~Vm~~G~i~Q~g~p~ely 222 (338)
T COG3839 187 TIYV-THDQVEAMTLADRIVVMNDGRIQQVGTPLELY 222 (338)
T ss_pred EEEE-cCCHHHHHhhCCEEEEEeCCeeeecCChHHHh
Confidence 5555 78887776544 8999999999999999873
No 16
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=1.7e-24 Score=243.11 Aligned_cols=225 Identities=13% Similarity=0.096 Sum_probs=143.9
Q ss_pred cccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeee
Q psy16304 153 MGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNR 232 (537)
Q Consensus 153 i~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~ 232 (537)
+.++++++.|+...+..+ ++|.+.+|+++||+|+||||||||+++|+|. ..|++|
T Consensus 2 i~i~nls~~~g~~~~l~~------------------vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~----~~pd~G--- 56 (638)
T PRK10636 2 IVFSSLQIRRGVRVLLDN------------------ATATINPGQKVGLVGKNGCGKSTLLALLKNE----ISADGG--- 56 (638)
T ss_pred EEEEEEEEEeCCceeecC------------------cEEEECCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCc---
Confidence 567888888776544433 4577889999999999999999999999999 999999
Q ss_pred EEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEe-ecCcccccCCcccccccCcCCccccCCc
Q psy16304 233 ARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLI-MCGVHQVSGIPDELTSATHLPLVDFRSV 311 (537)
Q Consensus 233 ~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~-Ds~~~~~~~l~~~l~~~~~l~~~~~~~~ 311 (537)
+|.++++..+.+..+......+ ..+++++|....+......+.... ......+..+...+.....+....+...
T Consensus 57 -~I~~~~~~~i~~~~q~~~~~~~----~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (638)
T PRK10636 57 -SYTFPGNWQLAWVNQETPALPQ----PALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAAS 131 (638)
T ss_pred -eEEecCCCEEEEEecCCCCCCC----CHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 9988875555554432111111 234554443221110000000000 0000000000000001111111223344
Q ss_pred cEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHHHHH-HHHHhcCCEEEEEEeC
Q psy16304 312 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRTIW-KQYLGTVSQTLLVSHS 388 (537)
Q Consensus 312 ~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~l~-~~~~~~~~~vIlVvds 388 (537)
.+..+|+........+.+|||||++|+ +++++++. + |++++|| |+|++.....| ..+++...++++++ +
T Consensus 132 ~L~~lgl~~~~~~~~~~~LSgGerqRv----~LA~aL~~-~--P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviiv-s 203 (638)
T PRK10636 132 LLHGLGFSNEQLERPVSDFSGGWRMRL----NLAQALIC-R--SDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILI-S 203 (638)
T ss_pred HHHhCCCCchhhcCchhhcCHHHHHHH----HHHHHHcc-C--CCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEE-e
Confidence 566788863333556899999999999 99999996 5 8999999 99997766666 77777666778888 8
Q ss_pred CCcchhhhhh--hhhhcCCcEEEEecccc
Q psy16304 389 LSGRPDDRCQ--VYLMSCNCQVYLISAKN 415 (537)
Q Consensus 389 hd~~~~~~~~--i~ll~~G~ii~~g~nkd 415 (537)
||+.+...++ ++++++|++..+.++.+
T Consensus 204 Hd~~~l~~~~d~i~~L~~G~i~~~~g~~~ 232 (638)
T PRK10636 204 HDRDFLDPIVDKIIHIEQQSLFEYTGNYS 232 (638)
T ss_pred CCHHHHHHhcCEEEEEeCCEEEEecCCHH
Confidence 9999988755 88999999987777764
No 17
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.88 E-value=2.6e-24 Score=201.82 Aligned_cols=220 Identities=14% Similarity=0.070 Sum_probs=153.5
Q ss_pred hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304 152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN 231 (537)
Q Consensus 152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t 231 (537)
++.+.++.|.|++. +.+...++|...+|+++||+|+|||||||+|++|.+. +.|++|
T Consensus 1 Ml~v~~l~K~y~~~-----------------v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatl----L~P~~G-- 57 (245)
T COG4555 1 MLEVTDLTKSYGSK-----------------VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATL----LIPDSG-- 57 (245)
T ss_pred CeeeeehhhhccCH-----------------HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHh----ccCCCc--
Confidence 35677888887762 2234556788999999999999999999999999999 999999
Q ss_pred eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcC------Cc
Q psy16304 232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHL------PL 305 (537)
Q Consensus 232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l------~~ 305 (537)
.+.++| +|+. +.....++.+|.++.+-.+|.+++. ++.+.++..+ +.
T Consensus 58 --~v~idg------~d~~---~~p~~vrr~IGVl~~e~glY~RlT~----------------rEnl~~Fa~L~~l~~~~~ 110 (245)
T COG4555 58 --KVTIDG------VDTV---RDPSFVRRKIGVLFGERGLYARLTA----------------RENLKYFARLNGLSRKEI 110 (245)
T ss_pred --eEEEee------cccc---cChHHHhhhcceecCCcChhhhhhH----------------HHHHHHHHHHhhhhhhHH
Confidence 777776 3432 2223445788988865555544443 2222222211 12
Q ss_pred cccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH-HHHHHHHhc--CC
Q psy16304 306 VDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR-TIWKQYLGT--VS 380 (537)
Q Consensus 306 ~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~-~l~~~~~~~--~~ 380 (537)
.++.+.....+|+....+.+ +..||.|++|++ ++|+++++ + |.++++| |+|++... ..+.++..+ ..
T Consensus 111 kari~~l~k~l~l~~~~~rR-v~~~S~G~kqkV----~iARAlvh-~--P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~e 182 (245)
T COG4555 111 KARIAELSKRLQLLEYLDRR-VGEFSTGMKQKV----AIARALVH-D--PSILVLDEPTSGLDIRTRRKFHDFIKQLKNE 182 (245)
T ss_pred HHHHHHHHHHhChHHHHHHH-HhhhchhhHHHH----HHHHHHhc-C--CCeEEEcCCCCCccHHHHHHHHHHHHHhhcC
Confidence 23334444577777776555 899999999999 99999998 6 8999999 99995332 233444332 23
Q ss_pred EEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchhhhhccchhhhhh
Q psy16304 381 QTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLSNGFKKSERDETN 429 (537)
Q Consensus 381 ~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~~~~~~~~~~~~~ 429 (537)
+-++++++|++.+.+.+| ++++++|.++..|+.+.+..+.....+++.+
T Consensus 183 gr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r~~~~~le~~f 233 (245)
T COG4555 183 GRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDARTVLRNLEEIF 233 (245)
T ss_pred CcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHHHhhcCHHHHH
Confidence 556666699999998666 8999999999999998775544444444443
No 18
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.88 E-value=8.6e-24 Score=217.43 Aligned_cols=209 Identities=18% Similarity=0.191 Sum_probs=145.7
Q ss_pred hhhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304 150 GILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG 229 (537)
Q Consensus 150 ~~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G 229 (537)
..++.++++.+.|++... ..+++|.+.+|+++||+||||||||||+++|+|. ..|++|
T Consensus 5 ~~~i~i~~l~k~~~~~~~------------------l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl----~~p~~G 62 (306)
T PRK13537 5 VAPIDFRNVEKRYGDKLV------------------VDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGL----THPDAG 62 (306)
T ss_pred CceEEEEeEEEEECCeEE------------------EecceEEEeCCcEEEEECCCCCCHHHHHHHHhcC----CCCCce
Confidence 346788999998764322 3345677889999999999999999999999999 999999
Q ss_pred eeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccC---cCC--
Q psy16304 230 FNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSAT---HLP-- 304 (537)
Q Consensus 230 ~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~---~l~-- 304 (537)
++.++| .++... ....++.+++++|++.++...+. .+.+.... ...
T Consensus 63 ----~v~i~G-~~~~~~--------~~~~~~~ig~v~q~~~~~~~~tv----------------~e~l~~~~~~~~~~~~ 113 (306)
T PRK13537 63 ----SISLCG-EPVPSR--------ARHARQRVGVVPQFDNLDPDFTV----------------RENLLVFGRYFGLSAA 113 (306)
T ss_pred ----EEEECC-Eecccc--------hHHHHhcEEEEeccCcCCCCCcH----------------HHHHHHHHHHcCCCHH
Confidence 888887 443211 11234779999999886654333 11111110 000
Q ss_pred -ccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchh--hHHHHHHHHHh--
Q psy16304 305 -LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSE--DFRTIWKQYLG-- 377 (537)
Q Consensus 305 -~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~--~~~~l~~~~~~-- 377 (537)
...+....+..+|+.... .+.+..||+||+||+ ++++++++ + |++++|| |+|++ ....+|+.+.+
T Consensus 114 ~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrl----~la~aL~~-~--P~lllLDEPt~gLD~~~~~~l~~~l~~l~ 185 (306)
T PRK13537 114 AARALVPPLLEFAKLENKA-DAKVGELSGGMKRRL----TLARALVN-D--PDVLVLDEPTTGLDPQARHLMWERLRSLL 185 (306)
T ss_pred HHHHHHHHHHHHcCCchHh-cCchhhCCHHHHHHH----HHHHHHhC-C--CCEEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence 001122334466776544 444899999999999 99999997 5 8999999 99993 33444443322
Q ss_pred cCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchhh
Q psy16304 378 TVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLSN 418 (537)
Q Consensus 378 ~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~~ 418 (537)
..+.+|+++ +|++.+.+.++ ++++++|+++..++..++..
T Consensus 186 ~~g~till~-sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 186 ARGKTILLT-THFMEEAERLCDRLCVIEEGRKIAEGAPHALIE 227 (306)
T ss_pred hCCCEEEEE-CCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 224566666 99999887654 89999999999998887743
No 19
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.87 E-value=2e-23 Score=207.58 Aligned_cols=202 Identities=14% Similarity=0.166 Sum_probs=150.8
Q ss_pred cccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhh
Q psy16304 184 LLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLG 263 (537)
Q Consensus 184 ~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~ 263 (537)
.-..+.+|.+..|+++.|.|.+|||||||++++.++ +.||.| +|.++| .++.-.+. ..++...++.++
T Consensus 42 vGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrL----iept~G----~ilv~g-~di~~~~~---~~Lr~~Rr~~~s 109 (386)
T COG4175 42 VGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRL----IEPTRG----EILVDG-KDIAKLSA---AELRELRRKKIS 109 (386)
T ss_pred EeeccceeeecCCeEEEEEecCCCCHHHHHHHHhcc----CCCCCc----eEEECC-cchhcCCH---HHHHHHHhhhhh
Confidence 345577889999999999999999999999999999 999999 999997 55544444 466777789999
Q ss_pred ccccCCCCCCCccceeeEEeecCcccccCCccccccc--CcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecc
Q psy16304 264 TVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSA--THLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPT 341 (537)
Q Consensus 264 ~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~--~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~t 341 (537)
+|||.+.++|+.+. .+++..-++.. ...+...++...+..+|+.+.. .+++++|||||+|||
T Consensus 110 MVFQ~FaLlPhrtV------------l~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~-~~yp~eLSGGMqQRV--- 173 (386)
T COG4175 110 MVFQSFALLPHRTV------------LENVAFGLEVQGVPKAEREERALEALELVGLEGYA-DKYPNELSGGMQQRV--- 173 (386)
T ss_pred hhhhhhccccchhH------------hhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhh-hcCcccccchHHHHH---
Confidence 99999999998665 22232222211 1111222344567789999886 566999999999999
Q ss_pred cccccceeccCCceEEEEEe--cCchhh--HHHHHHHHH---hcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEec
Q psy16304 342 VGFNRARVEYGNKYEVFLYD--LGGSED--FRTIWKQYL---GTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLIS 412 (537)
Q Consensus 342 i~la~all~~~e~p~lllLD--T~Gl~~--~~~l~~~~~---~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~ 412 (537)
++|+|+.. + |+++++| .+.++- ..++.++++ ++-+.+|+.+ +||.+++-.+- +.+|++|+++..|+
T Consensus 174 -GLARAla~-~--~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFi-tHDLdEAlriG~rIaimkdG~ivQ~Gt 248 (386)
T COG4175 174 -GLARALAN-D--PDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFI-THDLDEALRIGDRIAIMKDGEIVQVGT 248 (386)
T ss_pred -HHHHHHcc-C--CCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEE-ecCHHHHHhccceEEEecCCeEEEeCC
Confidence 99999996 5 8999999 666621 122333332 3444556666 78888777655 99999999999999
Q ss_pred ccchhh
Q psy16304 413 AKNLSN 418 (537)
Q Consensus 413 nkdl~~ 418 (537)
+.++..
T Consensus 249 p~eIl~ 254 (386)
T COG4175 249 PEEILL 254 (386)
T ss_pred HHHHHc
Confidence 998743
No 20
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.87 E-value=2.6e-24 Score=208.13 Aligned_cols=222 Identities=13% Similarity=0.102 Sum_probs=157.7
Q ss_pred hhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceee
Q psy16304 151 ILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF 230 (537)
Q Consensus 151 ~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~ 230 (537)
.+..++++.|.||+-...+ .++|.+.+|++++|+|||||||||++|+|+|. +.|+.|
T Consensus 3 ~lL~v~~l~k~FGGl~Al~------------------~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~----~~P~~G- 59 (250)
T COG0411 3 PLLEVRGLSKRFGGLTAVN------------------DVSLEVRPGEIVGLIGPNGAGKTTLFNLITGF----YKPSSG- 59 (250)
T ss_pred ceeeeccceeecCCEEEEe------------------ceeEEEcCCeEEEEECCCCCCceeeeeeeccc----ccCCCc-
Confidence 3556788888887654444 45678889999999999999999999999999 999999
Q ss_pred eeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcC-----Cc
Q psy16304 231 NRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHL-----PL 305 (537)
Q Consensus 231 t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l-----~~ 305 (537)
+|.+.| .++. +... ....+..+.--||...+|+.++..--..+- ...+.. ....+ +...+ +.
T Consensus 60 ---~v~~~G-~~it-----~l~p-~~iar~Gi~RTFQ~~rlF~~lTVlENv~va-~~~~~~-~~~~l-~~~~~~~~e~~~ 126 (250)
T COG0411 60 ---TVIFRG-RDIT-----GLPP-HRIARLGIARTFQITRLFPGLTVLENVAVG-AHARLG-LSGLL-GRPRARKEEREA 126 (250)
T ss_pred ---eEEECC-cccC-----CCCH-HHHHhccceeecccccccCCCcHHHHHHHH-hhhhhh-hhhhh-ccccchhhHHHH
Confidence 999887 4443 3222 234456778889999988887752100000 000000 00001 11111 11
Q ss_pred cccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCch-----hhHHHHHHHHHhc
Q psy16304 306 VDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGS-----EDFRTIWKQYLGT 378 (537)
Q Consensus 306 ~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl-----~~~~~l~~~~~~~ 378 (537)
..++...+..+|+.+.. ......||+|+++++ .+|+++.. + |++++|| ++|+ +.....++++.+.
T Consensus 127 ~e~A~~~Le~vgL~~~a-~~~A~~LsyG~qR~L----EIArALa~-~--P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~ 198 (250)
T COG0411 127 RERARELLEFVGLGELA-DRPAGNLSYGQQRRL----EIARALAT-Q--PKLLLLDEPAAGLNPEETEELAELIRELRDR 198 (250)
T ss_pred HHHHHHHHHHcCCchhh-cchhhcCChhHhHHH----HHHHHHhc-C--CCEEEecCccCCCCHHHHHHHHHHHHHHHhc
Confidence 22345667789998876 555899999999999 99999996 5 8999999 8888 3444455666665
Q ss_pred CCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchh
Q psy16304 379 VSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLS 417 (537)
Q Consensus 379 ~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~ 417 (537)
.+.+++++ -||+...-..+ +++|+.|++++.|++.+..
T Consensus 199 ~g~tillI-EHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV~ 238 (250)
T COG0411 199 GGVTILLI-EHDMKLVMGLADRIVVLNYGEVIAEGTPEEVR 238 (250)
T ss_pred CCcEEEEE-EeccHHHhhhccEEEeccCCcCcccCCHHHHh
Confidence 66788888 89988776555 9999999999999999873
No 21
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.87 E-value=8.3e-24 Score=203.29 Aligned_cols=224 Identities=14% Similarity=0.142 Sum_probs=150.1
Q ss_pred hhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceee
Q psy16304 151 ILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF 230 (537)
Q Consensus 151 ~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~ 230 (537)
.++.++++++.|++.... ...+++.+++||.|+|||++||||||||++|.|. ..|+.|
T Consensus 2 ~~i~~~nl~k~yp~~~~a-----------------L~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl----~d~t~G- 59 (258)
T COG3638 2 MMIEVKNLSKTYPGGHQA-----------------LKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGL----VDPTSG- 59 (258)
T ss_pred ceEEEeeeeeecCCCcee-----------------eeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcc----cCCCcc-
Confidence 467889999988533211 2234677889999999999999999999999999 999999
Q ss_pred eeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCc--ccc
Q psy16304 231 NRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPL--VDF 308 (537)
Q Consensus 231 t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~--~~~ 308 (537)
++.++| .++.- ..+ +....++..+|++||.+.+.++++..-- |. .. +......+...++-+.. ...
T Consensus 60 ---~i~~~g-~~i~~--~~~--k~lr~~r~~iGmIfQ~~nLv~r~sv~~N-Vl-~g--rl~~~s~~~slfglfsk~dk~~ 127 (258)
T COG3638 60 ---EILFNG-VQITK--LKG--KELRKLRRDIGMIFQQFNLVPRLSVLEN-VL-LG--RLGYTSTWRSLFGLFSKEDKAQ 127 (258)
T ss_pred ---eEEecc-cchhc--cch--HHHHHHHHhceeEeccCCcccccHHHHH-HH-hh--hcccchHHHHHhCCCCHHHHHH
Confidence 998887 43322 222 2234566899999999998776544100 00 00 00000000011111111 112
Q ss_pred CCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCch-----hhHHHHHHHHHhcCCE
Q psy16304 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGS-----EDFRTIWKQYLGTVSQ 381 (537)
Q Consensus 309 ~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl-----~~~~~l~~~~~~~~~~ 381 (537)
+-..+..+|+....-.+ ..+|||||+||| ++|++++. + |++++-| ++++ ......++++.++.+.
T Consensus 128 Al~aLervgi~~~A~qr-a~~LSGGQQQRV----aIARaL~Q-~--pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~ 199 (258)
T COG3638 128 ALDALERVGILDKAYQR-ASTLSGGQQQRV----AIARALVQ-Q--PKIILADEPVASLDPESAKKVMDILKDINQEDGI 199 (258)
T ss_pred HHHHHHHcCcHHHHHHH-hccCCcchhHHH----HHHHHHhc-C--CCEEecCCcccccChhhHHHHHHHHHHHHHHcCC
Confidence 22335577877666444 789999999999 99999996 4 7899989 7777 4455566676666555
Q ss_pred EEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchh
Q psy16304 382 TLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLS 417 (537)
Q Consensus 382 vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~ 417 (537)
++++. .|+.+.+...+ ++-+++|+++++|...++.
T Consensus 200 Tvi~n-LH~vdlA~~Y~~Riigl~~G~ivfDg~~~el~ 236 (258)
T COG3638 200 TVIVN-LHQVDLAKKYADRIIGLKAGRIVFDGPASELT 236 (258)
T ss_pred EEEEE-echHHHHHHHHhhheEecCCcEEEeCChhhhh
Confidence 55555 77776665433 8889999999999988763
No 22
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.87 E-value=1.1e-23 Score=236.27 Aligned_cols=273 Identities=17% Similarity=0.153 Sum_probs=186.3
Q ss_pred eeccchhh-hhHHHHHhhhcccccccccccccccCccccccccCCCCCCchhHHHHHHHHHHHHhhhcccccCCCcccCC
Q psy16304 87 VLYNMYKA-EIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAPTFEVCIVSLLVHLMRGILMGIQNVPNFQTSS 165 (537)
Q Consensus 87 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~m~~~li~~~~l~k~~~~~ 165 (537)
|.|||... .+.|+.+|...+++++....+++++.++++.+++-+...-+... .. -..-+.+++++..|+..
T Consensus 413 iAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~~~~~~---~~-----~~g~I~~~nvsf~y~~~ 484 (709)
T COG2274 413 VAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKTLIHL---PK-----LQGEIEFENVSFRYGPD 484 (709)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccccc---cc-----cCceEEEEEEEEEeCCC
Confidence 45676654 67899999999999999999999999999977653332211111 00 02245666666665543
Q ss_pred CCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEE
Q psy16304 166 VLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFL 245 (537)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~ 245 (537)
. | ....++++.+++|+++||||+||||||||+|+|+|. +.|+.| +|.++| +++..
T Consensus 485 ~----~------------~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gl----y~p~~G----~I~~dg-~dl~~ 539 (709)
T COG2274 485 D----P------------PVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGL----YKPQQG----RILLDG-VDLND 539 (709)
T ss_pred C----c------------chhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcC----CCCCCc----eEEECC-EeHHh
Confidence 1 1 123456788889999999999999999999999999 999999 999997 77766
Q ss_pred eecCCCchhhHHHHhhhhccccCCCCCCC-ccceeeEEee-cCcccccCC---cccccccCcCCccccCCccEEEeccCc
Q psy16304 246 YDLGGSEDFRTIWKQYLGTVSQTPLGRPD-SRTCQVYLIM-CGVHQVSGI---PDELTSATHLPLVDFRSVPILVLGLDN 320 (537)
Q Consensus 246 ~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~D-s~~~~~~~l---~~~l~~~~~l~~~~~~~~~L~llGl~~ 320 (537)
.|. ..+++.+++|+|++.++.. ..+++.+.-. .+.++..+. ...-+.+.+++.... ..+|..+
T Consensus 540 i~~-------~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~-----t~v~E~G 607 (709)
T COG2274 540 IDL-------ASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYD-----TPVGEGG 607 (709)
T ss_pred cCH-------HHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccc-----cccccCC
Confidence 665 3344899999999998765 2333222111 111111000 000011122211111 1445444
Q ss_pred cCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHHH--HHHHHHhcC-CEEEEEEeCCCcchhh
Q psy16304 321 AGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRT--IWKQYLGTV-SQTLLVSHSLSGRPDD 395 (537)
Q Consensus 321 ~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~--l~~~~~~~~-~~vIlVvdshd~~~~~ 395 (537)
.+ ||||||||+ ++||+++. + |++++|| |++++...+ +.+.+.+-. +.+++++ +|......
T Consensus 608 ~~-------LSGGQrQrl----alARaLl~-~--P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~I-aHRl~ti~ 672 (709)
T COG2274 608 AN-------LSGGQRQRL----ALARALLS-K--PKILLLDEATSALDPETEAIILQNLLQILQGRTVIII-AHRLSTIR 672 (709)
T ss_pred CC-------CCHHHHHHH----HHHHHhcc-C--CCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEE-EccchHhh
Confidence 44 999999999 99999997 5 8999999 999954443 335544432 2466666 78989888
Q ss_pred hhh-hhhhcCCcEEEEecccchhhh
Q psy16304 396 RCQ-VYLMSCNCQVYLISAKNLSNG 419 (537)
Q Consensus 396 ~~~-i~ll~~G~ii~~g~nkdl~~~ 419 (537)
.++ +++|++|+++..|+..++.+.
T Consensus 673 ~adrIiVl~~Gkiv~~gs~~ell~~ 697 (709)
T COG2274 673 SADRIIVLDQGKIVEQGSHEELLAQ 697 (709)
T ss_pred hccEEEEccCCceeccCCHHHHHHh
Confidence 887 999999999999999988654
No 23
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.87 E-value=4.6e-23 Score=198.54 Aligned_cols=210 Identities=16% Similarity=0.161 Sum_probs=154.8
Q ss_pred hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304 152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN 231 (537)
Q Consensus 152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t 231 (537)
.+.+++++|.||+..+.++ ++|.+.+|+++|++|+|||||||++++|.|. +.||+|
T Consensus 2 ~L~ie~vtK~Fg~k~av~~------------------isf~v~~G~i~GllG~NGAGKTTtfRmILgl----le~~~G-- 57 (300)
T COG4152 2 ALEIEGVTKSFGDKKAVDN------------------ISFEVPPGEIFGLLGPNGAGKTTTFRMILGL----LEPTEG-- 57 (300)
T ss_pred ceEEecchhccCceeeecc------------------eeeeecCCeEEEeecCCCCCccchHHHHhcc----CCccCc--
Confidence 3567888898877655544 5677889999999999999999999999999 999999
Q ss_pred eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCcc-----
Q psy16304 232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLV----- 306 (537)
Q Consensus 232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~----- 306 (537)
+|.++| . .........|||+|.+-.+|+.++. .+.+.++..+...
T Consensus 58 --~I~~~g-~-----------~~~~~~~~rIGyLPEERGLy~k~tv----------------~dql~yla~LkGm~~~e~ 107 (300)
T COG4152 58 --EITWNG-G-----------PLSQEIKNRIGYLPEERGLYPKMTV----------------EDQLKYLAELKGMPKAEI 107 (300)
T ss_pred --eEEEcC-c-----------chhhhhhhhcccChhhhccCccCcH----------------HHHHHHHHHhcCCcHHHH
Confidence 999987 2 2233445789999999998887665 2223222222211
Q ss_pred -ccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhc
Q psy16304 307 -DFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGT 378 (537)
Q Consensus 307 -~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~ 378 (537)
.+...++..+++.+.. ++.+.+||.|++|++ .+-.+++| . |++++|| .+|++-. .....++.+
T Consensus 108 ~~~~~~wLer~~i~~~~-~~kIk~LSKGnqQKI----QfisaviH-e--PeLlILDEPFSGLDPVN~elLk~~I~~lk~- 178 (300)
T COG4152 108 QKKLQAWLERLEIVGKK-TKKIKELSKGNQQKI----QFISAVIH-E--PELLILDEPFSGLDPVNVELLKDAIFELKE- 178 (300)
T ss_pred HHHHHHHHHhccccccc-cchHHHhhhhhhHHH----HHHHHHhc-C--CCEEEecCCccCCChhhHHHHHHHHHHHHh-
Confidence 1233455566766664 555999999999999 98899997 5 8999999 8888433 333333332
Q ss_pred CCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchhhhhccchh
Q psy16304 379 VSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLSNGFKKSER 425 (537)
Q Consensus 379 ~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~~~~~~~~~ 425 (537)
.++.+++++|.++-.+.+| +.++++|+.+.+|+..++++.+....+
T Consensus 179 -~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~~Gkk~~ 226 (300)
T COG4152 179 -EGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFGKKRL 226 (300)
T ss_pred -cCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHhcCCceE
Confidence 3444444589999888766 889999999999999998877765443
No 24
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.87 E-value=2.7e-23 Score=216.43 Aligned_cols=209 Identities=16% Similarity=0.187 Sum_probs=145.2
Q ss_pred hhhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304 150 GILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG 229 (537)
Q Consensus 150 ~~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G 229 (537)
..++.++++.+.|+.... ..+++|.+.+|+++||+||||||||||+++|+|. +.|++|
T Consensus 39 ~~~i~i~nl~k~y~~~~~------------------l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl----~~p~~G 96 (340)
T PRK13536 39 TVAIDLAGVSKSYGDKAV------------------VNGLSFTVASGECFGLLGPNGAGKSTIARMILGM----TSPDAG 96 (340)
T ss_pred ceeEEEEEEEEEECCEEE------------------EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcC----CCCCce
Confidence 346788999998764332 2345677889999999999999999999999999 999999
Q ss_pred eeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccC---cCC--
Q psy16304 230 FNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSAT---HLP-- 304 (537)
Q Consensus 230 ~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~---~l~-- 304 (537)
++.++| .++. +. ...++..+++++|++.++...+. .+.+.... ...
T Consensus 97 ----~i~i~G-~~~~--~~------~~~~~~~ig~v~q~~~~~~~~tv----------------~e~l~~~~~~~~~~~~ 147 (340)
T PRK13536 97 ----KITVLG-VPVP--AR------ARLARARIGVVPQFDNLDLEFTV----------------RENLLVFGRYFGMSTR 147 (340)
T ss_pred ----EEEECC-EECC--cc------hHHHhccEEEEeCCccCCCCCcH----------------HHHHHHHHHHcCCCHH
Confidence 999887 4332 11 12234679999999876554332 11111000 000
Q ss_pred -ccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchh--hHHHHHHHHHh--
Q psy16304 305 -LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSE--DFRTIWKQYLG-- 377 (537)
Q Consensus 305 -~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~--~~~~l~~~~~~-- 377 (537)
........+..+|+.... ...+..||+||+||+ ++++++++ + |++++|| |+|++ ....+|+.+.+
T Consensus 148 ~~~~~~~~ll~~~~L~~~~-~~~~~~LS~G~kqrv----~lA~aL~~-~--P~lLiLDEPt~gLD~~~r~~l~~~l~~l~ 219 (340)
T PRK13536 148 EIEAVIPSLLEFARLESKA-DARVSDLSGGMKRRL----TLARALIN-D--PQLLILDEPTTGLDPHARHLIWERLRSLL 219 (340)
T ss_pred HHHHHHHHHHHHcCCchhh-CCChhhCCHHHHHHH----HHHHHHhc-C--CCEEEEECCCCCCCHHHHHHHHHHHHHHH
Confidence 001112234467776554 444899999999999 99999997 5 8999999 99993 33344443322
Q ss_pred cCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchhh
Q psy16304 378 TVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLSN 418 (537)
Q Consensus 378 ~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~~ 418 (537)
..+.+++++ +|+....+.++ ++++++|+++..+++.++..
T Consensus 220 ~~g~tilis-SH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 220 ARGKTILLT-THFMEEAERLCDRLCVLEAGRKIAEGRPHALID 261 (340)
T ss_pred hCCCEEEEE-CCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 234566666 99999887654 89999999999998887744
No 25
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=3.8e-23 Score=221.09 Aligned_cols=265 Identities=18% Similarity=0.176 Sum_probs=178.4
Q ss_pred hhhHHHHHhhhcccccccccccccccCccccccccCCCCCCchhHHHHHHHHHHHHhhhcccccCCCcccCCCCCCCCCc
Q psy16304 94 AEIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAPTFEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDDPAP 173 (537)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~~~~~~ 173 (537)
..++|+++++..+|--+.+.++.+.++.+++++....+...+++. .--...-+.++++...|+.+..
T Consensus 269 Eff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~-------~~~~~~ei~~~~l~~~y~~g~~------ 335 (559)
T COG4988 269 EFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEV-------ANEPPIEISLENLSFRYPDGKP------ 335 (559)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCcccccc-------ccCCCceeeecceEEecCCCCc------
Confidence 357999999999999999999999999999977553322221111 0000122344577776655421
Q ss_pred chhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCch
Q psy16304 174 TFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSED 253 (537)
Q Consensus 174 ~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~ 253 (537)
+...+++++++|++++|||++|||||||++.|.|. ..|+.| ++.++| .++...+.
T Consensus 336 -----------~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~----~~~~~G----~I~vng-~~l~~l~~----- 390 (559)
T COG4988 336 -----------ALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGF----LAPTQG----EIRVNG-IDLRDLSP----- 390 (559)
T ss_pred -----------ccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCc----CCCCCc----eEEECC-ccccccCH-----
Confidence 12335677889999999999999999999999999 999999 999997 55544333
Q ss_pred hhHHHHhhhhccccCCCCCCC-ccceeeEEee-cCcccccCCcccccccCcCCccccCCccE-EEeccCccCccchhhhh
Q psy16304 254 FRTIWKQYLGTVSQTPLGRPD-SRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPI-LVLGLDNAGKSSIIKRI 330 (537)
Q Consensus 254 ~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L-~llGl~~~gKs~li~~L 330 (537)
..|++.+++|+|++.++.. ..+++.+.-. .+.+...++ ++...-.+.... ..-+ ..+|..+.+ |
T Consensus 391 --~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~a---l~~a~l~~~v~~-p~GLdt~ige~G~~-------L 457 (559)
T COG4988 391 --EAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAA---LDQAGLLEFVPK-PDGLDTVIGEGGAG-------L 457 (559)
T ss_pred --HHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHH---HHHhcHHHhhcC-CCcccchhccCCCC-------C
Confidence 5566999999999998876 3444333222 222221111 111100000000 0001 134444444 9
Q ss_pred cCCCceeeecccccccceeccCCceEEEEEe--cCchhhHHH--HHHHHHhcC-CEEEEEEeCCCcchhhhhh-hhhhcC
Q psy16304 331 LGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRT--IWKQYLGTV-SQTLLVSHSLSGRPDDRCQ-VYLMSC 404 (537)
Q Consensus 331 SgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~--l~~~~~~~~-~~vIlVvdshd~~~~~~~~-i~ll~~ 404 (537)
||||+||+ ++||+++. + ++++++| |+|++...+ +.+.+.+.. +.+++++ +|+.......+ ++++++
T Consensus 458 SgGQ~QRl----aLARAll~-~--~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~i-tHrl~~~~~~D~I~vld~ 529 (559)
T COG4988 458 SGGQAQRL----ALARALLS-P--ASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVI-THRLEDAADADRIVVLDN 529 (559)
T ss_pred CHHHHHHH----HHHHHhcC-C--CCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEE-EcChHHHhcCCEEEEecC
Confidence 99999999 99999997 4 7999999 999944433 334443322 3566666 89988887766 999999
Q ss_pred CcEEEEecccchh
Q psy16304 405 NCQVYLISAKNLS 417 (537)
Q Consensus 405 G~ii~~g~nkdl~ 417 (537)
|+++..|.+.++.
T Consensus 530 G~l~~~g~~~~L~ 542 (559)
T COG4988 530 GRLVEQGTHEELS 542 (559)
T ss_pred CceeccCCHHHHh
Confidence 9999999999884
No 26
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.86 E-value=6.2e-23 Score=202.28 Aligned_cols=212 Identities=15% Similarity=0.139 Sum_probs=141.9
Q ss_pred hhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceee
Q psy16304 151 ILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF 230 (537)
Q Consensus 151 ~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~ 230 (537)
.++.++|+...|++..+.. ++++.+.+|++++|+||||||||||+|.|.|. ..|+.|
T Consensus 3 ~~i~v~nl~v~y~~~~vl~------------------~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGl----l~p~~G- 59 (254)
T COG1121 3 PMIEVENLTVSYGNRPVLE------------------DISLSVEKGEITALIGPNGAGKSTLLKAILGL----LKPSSG- 59 (254)
T ss_pred cEEEEeeeEEEECCEeeee------------------ccEEEEcCCcEEEEECCCCCCHHHHHHHHhCC----CcCCcc-
Confidence 4567788888776543333 34577889999999999999999999999999 999999
Q ss_pred eeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEee-cCcccccCCcccccccCcCC--ccc
Q psy16304 231 NRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIM-CGVHQVSGIPDELTSATHLP--LVD 307 (537)
Q Consensus 231 t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~--~~~ 307 (537)
+|.+.| ..+.. . .- ..++|||||...+- ...-+.|.| ....+ .....++..+. ...
T Consensus 60 ---~i~~~g-~~~~~-----~-~~----~~~IgYVPQ~~~~d---~~fP~tV~d~V~~g~----~~~~g~~~~~~~~d~~ 118 (254)
T COG1121 60 ---EIKIFG-KPVRK-----R-RK----RLRIGYVPQKSSVD---RSFPITVKDVVLLGR----YGKKGWFRRLNKKDKE 118 (254)
T ss_pred ---eEEEcc-ccccc-----c-cc----CCeEEEcCcccccC---CCCCcCHHHHHHccC----cccccccccccHHHHH
Confidence 888776 21111 1 10 25699999976421 111112222 00111 11111222221 112
Q ss_pred cCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCch-----hhHHHHHHHHHhcCC
Q psy16304 308 FRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGS-----EDFRTIWKQYLGTVS 380 (537)
Q Consensus 308 ~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl-----~~~~~l~~~~~~~~~ 380 (537)
.....+..+|+.+..+.. +.+|||||+||+ -+|||++. + |++++|| +.|+ ..+..++.++.++ +
T Consensus 119 ~v~~aL~~Vgm~~~~~r~-i~~LSGGQ~QRV----~lARAL~~-~--p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-g 189 (254)
T COG1121 119 KVDEALERVGMEDLRDRQ-IGELSGGQKQRV----LLARALAQ-N--PDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-G 189 (254)
T ss_pred HHHHHHHHcCchhhhCCc-ccccCcHHHHHH----HHHHHhcc-C--CCEEEecCCcccCCHHHHHHHHHHHHHHHHC-C
Confidence 344567788998877544 999999999999 99999996 4 8999999 8887 3444555666666 5
Q ss_pred EEEEEEeCCCcchhhh-hhhhhhcCCcEEEEecccch
Q psy16304 381 QTLLVSHSLSGRPDDR-CQVYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 381 ~vIlVvdshd~~~~~~-~~i~ll~~G~ii~~g~nkdl 416 (537)
.+|+++ +||...... ++.++.=++.+++.|.+.+.
T Consensus 190 ~tIl~v-tHDL~~v~~~~D~vi~Ln~~~~~~G~~~~~ 225 (254)
T COG1121 190 KTVLMV-THDLGLVMAYFDRVICLNRHLIASGPPEEV 225 (254)
T ss_pred CEEEEE-eCCcHHhHhhCCEEEEEcCeeEeccChhhc
Confidence 667777 788877665 44444556678888888876
No 27
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.86 E-value=2e-23 Score=217.37 Aligned_cols=216 Identities=16% Similarity=0.132 Sum_probs=145.9
Q ss_pred cccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeee
Q psy16304 153 MGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNR 232 (537)
Q Consensus 153 i~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~ 232 (537)
+.++++.+.|+... .. ..+..+++|.+.+|+++||+|+||||||||+++|+|. ..|++|
T Consensus 2 I~~~~lsk~y~~~~--~~------------~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl----~~p~~G--- 60 (343)
T TIGR02314 2 IKLSNITKVFHQGT--KT------------IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLL----ERPTSG--- 60 (343)
T ss_pred EEEEEEEEEECCCC--cc------------eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC----CCCCce---
Confidence 56778888775311 00 1133456788889999999999999999999999999 999999
Q ss_pred EEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC---ccccC
Q psy16304 233 ARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDFR 309 (537)
Q Consensus 233 ~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~~ 309 (537)
+|.++| .++..++. ... ...++.++++||++.+++..+. .+++...+. ...+. ...+.
T Consensus 61 -~I~i~G-~~i~~~~~---~~l-~~~r~~Ig~v~Q~~~l~~~~tv------------~eni~~~~~-~~~~~~~~~~~~v 121 (343)
T TIGR02314 61 -SVIVDG-QDLTTLSN---SEL-TKARRQIGMIFQHFNLLSSRTV------------FGNVALPLE-LDNTPKDEIKRKV 121 (343)
T ss_pred -EEEECC-EECCcCCH---HHH-HHHhcCEEEEECCccccccCcH------------HHHHHHHHH-HcCCCHHHHHHHH
Confidence 999987 44322211 111 1234679999999887654332 111111000 00110 01122
Q ss_pred CccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhh-----HHHHHHHHHhcCCEE
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSED-----FRTIWKQYLGTVSQT 382 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~-----~~~l~~~~~~~~~~v 382 (537)
...+..+|+.+.. ...+.+|||||+||+ ++|++++. + |+++++| |++++. +..+++++.++.+.+
T Consensus 122 ~e~l~~vgL~~~~-~~~~~~LSgGqkQRV----~IARAL~~-~--P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~t 193 (343)
T TIGR02314 122 TELLALVGLGDKH-DSYPSNLSGGQKQRV----AIARALAS-N--PKVLLCDEATSALDPATTQSILELLKEINRRLGLT 193 (343)
T ss_pred HHHHHHcCCchhh-hCChhhCCHHHHHHH----HHHHHHHh-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 3345567887654 556899999999999 99999996 5 8999999 999932 223334554443566
Q ss_pred EEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchh
Q psy16304 383 LLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLS 417 (537)
Q Consensus 383 IlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~ 417 (537)
++++ +|+++.....+ +++|++|+++..|...++.
T Consensus 194 iili-TH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 194 ILLI-THEMDVVKRICDCVAVISNGELIEQGTVSEIF 229 (343)
T ss_pred EEEE-eCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 7777 89998876543 9999999999988877763
No 28
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.86 E-value=7.1e-23 Score=200.11 Aligned_cols=234 Identities=16% Similarity=0.163 Sum_probs=155.6
Q ss_pred hcccccCCCcccCCCCCCCCCcchhhccc---ccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCce
Q psy16304 152 LMGIQNVPNFQTSSVLSDDPAPTFENFLD---LRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTV 228 (537)
Q Consensus 152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~ 228 (537)
++.++++.|.|.-..........++.+.. ..+.++..+||.+.+|+++|++|+|||||||++|+|+|. ..|++
T Consensus 3 ~i~~~~l~k~~~~~~k~pgl~g~l~~~~~~k~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGl----l~p~~ 78 (325)
T COG4586 3 MIMVENLSKNYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGL----LLPTS 78 (325)
T ss_pred eeEecccccccceeeeCchhHHHHHhhcCchhhhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCc----cccCC
Confidence 45677888877543322222222333333 235678899999999999999999999999999999999 99999
Q ss_pred eeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc-cCCCCCCCccceeeEEee-cCcccccCCcccccccCcCCcc
Q psy16304 229 GFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS-QTPLGRPDSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLV 306 (537)
Q Consensus 229 G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~-Q~~~l~~~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~ 306 (537)
| .+.++|-..+ + .+....+.+++|+ |... +-+| ...+.+. +...+..+..-.+.
T Consensus 79 G----~v~V~G~~Pf---~------~~~~~~~~~~~v~gqk~q----------l~Wdlp~~ds~~-v~~~Iy~Ipd~~F~ 134 (325)
T COG4586 79 G----KVRVNGKDPF---R------RREEYLRSIGLVMGQKLQ----------LWWDLPALDSLE-VLKLIYEIPDDEFA 134 (325)
T ss_pred C----eEEecCcCcc---h------hHHHHHHHHHHHhhhhhe----------eeeechhhhhHH-HHHHHHhCCHHHHH
Confidence 9 8888772111 1 1122223344432 2211 1222 1111100 00000111111111
Q ss_pred ccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCch-----hhHHHHHHHHHhcC
Q psy16304 307 DFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGS-----EDFRTIWKQYLGTV 379 (537)
Q Consensus 307 ~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl-----~~~~~l~~~~~~~~ 379 (537)
.+......++++.+.-+.. ++.||-|||+|. .++.++++ + |+++||| |-|+ ...+++++.|.+..
T Consensus 135 ~r~~~l~eiLdl~~~lk~~-vr~LSlGqRmra----eLaaaLLh-~--p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~ 206 (325)
T COG4586 135 ERLDFLTEILDLEGFLKWP-VRKLSLGQRMRA----ELAAALLH-P--PKVLFLDEPTVGLDVNAQANIREFLKEYNEER 206 (325)
T ss_pred HHHHHHHHHhcchhhhhhh-hhhccchHHHHH----HHHHHhcC-C--CcEEEecCCccCcchhHHHHHHHHHHHHHHhh
Confidence 2223334467777666555 999999999999 99999998 6 8999999 8888 56677778888888
Q ss_pred CEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchhhhhcc
Q psy16304 380 SQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLSNGFKK 422 (537)
Q Consensus 380 ~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~~~~~~ 422 (537)
.++|+.+ +|++......| +..++.|+++..|+-+.+..++..
T Consensus 207 ~aTVllT-TH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f~~ 250 (325)
T COG4586 207 QATVLLT-THIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFGP 250 (325)
T ss_pred CceEEEE-ecchhhHHHhhhheEEeeCCcEeecccHHHHHHHhCC
Confidence 8888888 99999888766 888999999999998888776654
No 29
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=3.5e-23 Score=216.40 Aligned_cols=211 Identities=16% Similarity=0.142 Sum_probs=146.1
Q ss_pred hhhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304 150 GILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG 229 (537)
Q Consensus 150 ~~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G 229 (537)
..++.++++.+.|++... ..++++.+.+|++++|+||||||||||+++|+|. ..|++|
T Consensus 4 ~~~l~~~~l~~~~~~~~~------------------l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl----~~p~~G 61 (351)
T PRK11432 4 KNFVVLKNITKRFGSNTV------------------IDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGL----EKPTEG 61 (351)
T ss_pred CcEEEEEeEEEEECCeEE------------------EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCC----CCCCce
Confidence 346778888888764322 2335677889999999999999999999999999 999999
Q ss_pred eeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccc--cCcCCccc
Q psy16304 230 FNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTS--ATHLPLVD 307 (537)
Q Consensus 230 ~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~--~~~l~~~~ 307 (537)
+|.++| ..+. ... ..++.++++||++.+++.++. .+++...+.. ........
T Consensus 62 ----~I~~~g-~~i~-----~~~----~~~r~ig~vfQ~~~lfp~~tv------------~eNi~~~l~~~~~~~~~~~~ 115 (351)
T PRK11432 62 ----QIFIDG-EDVT-----HRS----IQQRDICMVFQSYALFPHMSL------------GENVGYGLKMLGVPKEERKQ 115 (351)
T ss_pred ----EEEECC-EECC-----CCC----HHHCCEEEEeCCcccCCCCCH------------HHHHHHHHhHcCCCHHHHHH
Confidence 999987 4432 111 223679999999998876554 1111111110 00000011
Q ss_pred cCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhh-----HHHHHHHHHhcCC
Q psy16304 308 FRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSED-----FRTIWKQYLGTVS 380 (537)
Q Consensus 308 ~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~-----~~~l~~~~~~~~~ 380 (537)
+....+..+|+.+.. .+.+.+|||||+||+ +++++++. + |++++|| +++++. ....+..+.++.+
T Consensus 116 ~v~~~l~~~gl~~~~-~r~~~~LSgGq~QRV----aLARaL~~-~--P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g 187 (351)
T PRK11432 116 RVKEALELVDLAGFE-DRYVDQISGGQQQRV----ALARALIL-K--PKVLLFDEPLSNLDANLRRSMREKIRELQQQFN 187 (351)
T ss_pred HHHHHHHHcCCchhh-cCChhhCCHHHHHHH----HHHHHHHc-C--CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 223344466776654 455899999999999 99999996 4 8999999 888832 2223344444445
Q ss_pred EEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchh
Q psy16304 381 QTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLS 417 (537)
Q Consensus 381 ~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~ 417 (537)
.+++++ +||..+...++ +++|++|++...+++.++.
T Consensus 188 ~tii~v-THd~~e~~~laD~i~vm~~G~i~~~g~~~~~~ 225 (351)
T PRK11432 188 ITSLYV-THDQSEAFAVSDTVIVMNKGKIMQIGSPQELY 225 (351)
T ss_pred CEEEEE-cCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 566666 89988876543 9999999999999888763
No 30
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.85 E-value=9.8e-23 Score=186.70 Aligned_cols=192 Identities=15% Similarity=0.150 Sum_probs=141.1
Q ss_pred ccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhc
Q psy16304 185 LPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGT 264 (537)
Q Consensus 185 ~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~ 264 (537)
+-..+++.+++|+.++||||+|+|||||+-.++|. ..|++| +|.+.| ..+...|-.+... ...+.+|+
T Consensus 25 IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGL----d~~ssG----eV~l~G-~~L~~ldEd~rA~---~R~~~vGf 92 (228)
T COG4181 25 ILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGL----DDPSSG----EVRLLG-QPLHKLDEDARAA---LRARHVGF 92 (228)
T ss_pred EeecceEEecCCceEEEEcCCCCcHHhHHHHHhcC----CCCCCc----eEEEcC-cchhhcCHHHHHH---hhccceeE
Confidence 44556788899999999999999999999999999 899999 888887 5555555433333 33478999
Q ss_pred cccCCCCCCCccceeeEEeecCcccccCCcccccccCc--CCccccCCccEEEeccCccCccchhhhhcCCCceeeeccc
Q psy16304 265 VSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATH--LPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTV 342 (537)
Q Consensus 265 v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~--l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti 342 (537)
|||.+.+.+.++. .+++.--+...++ -+....+...+..+|+.... +.++.+||||++|||
T Consensus 93 VFQSF~Lip~ltA------------lENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl-~HyP~qLSGGEQQRV---- 155 (228)
T COG4181 93 VFQSFHLIPNLTA------------LENVALPLELRGESSADSRAGAKALLEAVGLGKRL-THYPAQLSGGEQQRV---- 155 (228)
T ss_pred EEEeeeccccchh------------hhhccchhhhcCCccccHHHHHHHHHHHhCccccc-ccCccccCchHHHHH----
Confidence 9999998887766 3333332322221 11222344556678888775 667999999999999
Q ss_pred ccccceeccCCceEEEEEe--cCch-----hhHHHHHHHHHhcCCEEEEEEeCCCcchhhhhh-hhhhcCCcEEE
Q psy16304 343 GFNRARVEYGNKYEVFLYD--LGGS-----EDFRTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQVY 409 (537)
Q Consensus 343 ~la~all~~~e~p~lllLD--T~Gl-----~~~~~l~~~~~~~~~~vIlVvdshd~~~~~~~~-i~ll~~G~ii~ 409 (537)
++|+++.. . |+++|-| |..+ +.+..++-.+.++...+++++ +||+.....|. .+.|..|++..
T Consensus 156 AiARAfa~--~-P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlV-THD~~LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 156 ALARAFAG--R-PDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLV-THDPQLAARCDRQLRLRSGRLVE 226 (228)
T ss_pred HHHHHhcC--C-CCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEE-eCCHHHHHhhhheeeeecceecc
Confidence 99999995 3 8999999 6666 333444444455666677777 89999888777 88888888753
No 31
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.85 E-value=1.9e-22 Score=198.84 Aligned_cols=196 Identities=17% Similarity=0.147 Sum_probs=135.1
Q ss_pred cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304 188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ 267 (537)
Q Consensus 188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q 267 (537)
.+++.+.+|+.++|+|+||||||||+++++|. ..|++| .|.++| ..+.. .......++.+|+|||
T Consensus 22 ~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GL----l~p~~G----~v~~~g-~~~~~------~~~~~~~~~~vG~VfQ 86 (235)
T COG1122 22 DVSLEIEKGERVLLIGPNGSGKSTLLKLLNGL----LKPTSG----EVLVDG-LDTSS------EKSLLELRQKVGLVFQ 86 (235)
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHcCc----CcCCCC----EEEECC-eeccc------hhhHHHhhcceEEEEE
Confidence 45677889999999999999999999999999 999999 888876 33321 1112334488999999
Q ss_pred CCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccc
Q psy16304 268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA 347 (537)
Q Consensus 268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~a 347 (537)
++....-... ..+....-...+.. ..-+...+....+..+|+.+. ....+..|||||+||+ ++|.+
T Consensus 87 npd~q~~~~t--------V~~evafg~~n~g~-~~~e~~~rv~~~l~~vgl~~~-~~r~p~~LSGGqkqRv----aIA~v 152 (235)
T COG1122 87 NPDDQLFGPT--------VEDEVAFGLENLGL-PREEIEERVAEALELVGLEEL-LDRPPFNLSGGQKQRV----AIAGV 152 (235)
T ss_pred CcccccccCc--------HHHHHhhchhhcCC-CHHHHHHHHHHHHHHcCchhh-ccCCccccCCcceeeH----HhhHH
Confidence 9862111000 00000000000000 000112233455667888777 4566999999999999 99999
Q ss_pred eeccCCceEEEEEe--cCch-----hhHHHHHHHHHhcCCEEEEEEeCCCcchhhh-hh-hhhhcCCcEEEEecccch
Q psy16304 348 RVEYGNKYEVFLYD--LGGS-----EDFRTIWKQYLGTVSQTLLVSHSLSGRPDDR-CQ-VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 348 ll~~~e~p~lllLD--T~Gl-----~~~~~l~~~~~~~~~~vIlVvdshd~~~~~~-~~-i~ll~~G~ii~~g~nkdl 416 (537)
++. . |++++|| |+|+ +....++.++.++.+.+++++ +||++.... ++ +++|++|+++..|.+.++
T Consensus 153 La~-~--P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~-tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i 226 (235)
T COG1122 153 LAM-G--PEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIV-THDLELVLEYADRVVVLDDGKILADGDPAEI 226 (235)
T ss_pred HHc-C--CCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEE-eCcHHHHHhhCCEEEEEECCEEeecCCHHHH
Confidence 986 5 8999999 9999 344445566666655567777 888887776 33 999999999999988766
No 32
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=9.7e-23 Score=213.54 Aligned_cols=190 Identities=17% Similarity=0.131 Sum_probs=133.5
Q ss_pred cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304 188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ 267 (537)
Q Consensus 188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q 267 (537)
++++.+.+|++++|+||||||||||+++|+|. ..|++| +|.++| ..+.. ... .++.+++|||
T Consensus 22 ~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl----~~p~~G----~I~~~g-~~i~~-----~~~----~~r~ig~v~Q 83 (356)
T PRK11650 22 GIDLDVADGEFIVLVGPSGCGKSTLLRMVAGL----ERITSG----EIWIGG-RVVNE-----LEP----ADRDIAMVFQ 83 (356)
T ss_pred eeeEEEcCCCEEEEECCCCCcHHHHHHHHHCC----CCCCce----EEEECC-EECCC-----CCH----HHCCEEEEeC
Confidence 45677889999999999999999999999999 999999 999987 43321 111 2267999999
Q ss_pred CCCCCCCccceeeEEeecCcccccCCcccccccCcCC---ccccCCccEEEeccCccCccchhhhhcCCCceeeeccccc
Q psy16304 268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF 344 (537)
Q Consensus 268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~l 344 (537)
++.+++.++. .+++...+.. .... ...+....+..+|+.+.. .+.+.+|||||+||+ ++
T Consensus 84 ~~~lfp~~tv------------~eNi~~~~~~-~~~~~~~~~~~~~~~l~~~gL~~~~-~~~~~~LSgGq~QRv----al 145 (356)
T PRK11650 84 NYALYPHMSV------------RENMAYGLKI-RGMPKAEIEERVAEAARILELEPLL-DRKPRELSGGQRQRV----AM 145 (356)
T ss_pred CccccCCCCH------------HHHHHhHHhh-cCCCHHHHHHHHHHHHHHcCChhHh-hCChhhCCHHHHHHH----HH
Confidence 9988876544 1111111100 0010 011223445567877654 555899999999999 99
Q ss_pred ccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccc
Q psy16304 345 NRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKN 415 (537)
Q Consensus 345 a~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkd 415 (537)
+++++. + |++++|| |++++.. ...+..+.++.+.+++++ +||..+....+ +++|++|+++..|++.+
T Consensus 146 ARAL~~-~--P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~v-THd~~ea~~l~D~i~vl~~G~i~~~g~~~~ 221 (356)
T PRK11650 146 GRAIVR-E--PAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYV-THDQVEAMTLADRVVVMNGGVAEQIGTPVE 221 (356)
T ss_pred HHHHhc-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhCCEEEEEeCCEEEEECCHHH
Confidence 999996 4 8999999 9998322 223344444434566666 88887766543 89999999999998887
Q ss_pred hh
Q psy16304 416 LS 417 (537)
Q Consensus 416 l~ 417 (537)
+.
T Consensus 222 ~~ 223 (356)
T PRK11650 222 VY 223 (356)
T ss_pred HH
Confidence 63
No 33
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=9.7e-23 Score=201.62 Aligned_cols=196 Identities=16% Similarity=0.132 Sum_probs=127.9
Q ss_pred ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304 187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS 266 (537)
Q Consensus 187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~ 266 (537)
.++++.+.+|++++|+|+||||||||+++|+|. ..|++| +|.++| ..+..++. .....++..+++++
T Consensus 17 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~----~~p~~G----~i~~~g-~~~~~~~~----~~~~~~~~~i~~v~ 83 (235)
T cd03261 17 KGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGL----LRPDSG----EVLIDG-EDISGLSE----AELYRLRRRMGMLF 83 (235)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCce----EEEECC-EEccccCh----hhHHHHhcceEEEc
Confidence 345677889999999999999999999999999 999999 898887 44322111 00122346799999
Q ss_pred cCCCCCCCccceeeEEeecCcccccCCcccccccCcCC---ccccCCccEEEeccCccCccchhhhhcCCCceeeecccc
Q psy16304 267 QTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG 343 (537)
Q Consensus 267 Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~ 343 (537)
|++.+++..+.. + ++........... ........+..+|+.... ...+.+|||||+||+ +
T Consensus 84 q~~~~~~~~tv~-----~-------~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgG~~qrv----~ 146 (235)
T cd03261 84 QSGALFDSLTVF-----E-------NVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAE-DLYPAELSGGMKKRV----A 146 (235)
T ss_pred cCcccCCCCcHH-----H-------HHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhh-cCChhhCCHHHHHHH----H
Confidence 998765542220 0 0000000000000 001112234456765543 445889999999999 9
Q ss_pred cccceeccCCceEEEEEe--cCchhhHH-----HHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEeccc
Q psy16304 344 FNRARVEYGNKYEVFLYD--LGGSEDFR-----TIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAK 414 (537)
Q Consensus 344 la~all~~~e~p~lllLD--T~Gl~~~~-----~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nk 414 (537)
++++++. + |++++|| |+|++... ..+..+.++.+.+++++ +|+.......+ ++++++|+++..+.+.
T Consensus 147 ia~al~~-~--p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~v-sH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 222 (235)
T cd03261 147 LARALAL-D--PELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMV-THDLDTAFAIADRIAVLYDGKIVAEGTPE 222 (235)
T ss_pred HHHHHhc-C--CCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEE-ecCHHHHHHhcCEEEEEECCeEEEecCHH
Confidence 9999996 5 8999999 99994332 22333333334567777 89988776533 8899999998877665
Q ss_pred ch
Q psy16304 415 NL 416 (537)
Q Consensus 415 dl 416 (537)
++
T Consensus 223 ~~ 224 (235)
T cd03261 223 EL 224 (235)
T ss_pred HH
Confidence 54
No 34
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.85 E-value=1.2e-23 Score=197.18 Aligned_cols=210 Identities=16% Similarity=0.144 Sum_probs=145.8
Q ss_pred hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304 152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN 231 (537)
Q Consensus 152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t 231 (537)
.+.++++.|.|+.+.+..+ +|+.+++||+|||+|||||||||.+++++|. ..|++|
T Consensus 4 ~L~a~~l~K~y~kr~Vv~~------------------Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Gl----v~~d~G-- 59 (243)
T COG1137 4 TLVAENLAKSYKKRKVVND------------------VSLEVNSGEIVGLLGPNGAGKTTTFYMIVGL----VRPDSG-- 59 (243)
T ss_pred EEEehhhhHhhCCeeeeee------------------eeEEEcCCcEEEEECCCCCCceeEEEEEEEE----EecCCc--
Confidence 3456788888777665544 4677889999999999999999999999999 999999
Q ss_pred eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcC-C-ccc--
Q psy16304 232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHL-P-LVD-- 307 (537)
Q Consensus 232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l-~-~~~-- 307 (537)
.|.+++ .++..... . ...+..+||++|+++.|..++. .+++...++....- . ...
T Consensus 60 --~i~ld~-~diT~lPm--~----~RArlGigYLpQE~SIFr~LtV------------~dNi~~vlE~~~~d~~~~~~~~ 118 (243)
T COG1137 60 --KILLDD-EDITKLPM--H----KRARLGIGYLPQEASIFRKLTV------------EDNIMAVLEIREKDLKKAERKE 118 (243)
T ss_pred --eEEECC-cccccCCh--H----HHhhcCcccccccchHhhcCcH------------HHHHHHHHhhhhcchhHHHHHH
Confidence 998887 55544333 1 2234679999999998876554 11111111111100 0 001
Q ss_pred cCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchh-----hHHHHHHHHHhcCC
Q psy16304 308 FRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSE-----DFRTIWKQYLGTVS 380 (537)
Q Consensus 308 ~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~-----~~~~l~~~~~~~~~ 380 (537)
+.+..+.-+++.+.. .+...+||||+|+|+ .+|+++.. + |.+++|| .+|.+ .+..+...+ +..+
T Consensus 119 ~l~~LL~ef~i~hlr-~~~a~sLSGGERRR~----EIARaLa~-~--P~fiLLDEPFAGVDPiaV~dIq~iI~~L-~~rg 189 (243)
T COG1137 119 ELDALLEEFHITHLR-DSKAYSLSGGERRRV----EIARALAA-N--PKFILLDEPFAGVDPIAVIDIQRIIKHL-KDRG 189 (243)
T ss_pred HHHHHHHHhchHHHh-cCcccccccchHHHH----HHHHHHhc-C--CCEEEecCCccCCCchhHHHHHHHHHHH-HhCC
Confidence 112333445555554 334788999999999 99999996 5 8999999 77873 333333443 4445
Q ss_pred EEEEEEeCCC-cchhhhhh-hhhhcCCcEEEEecccch
Q psy16304 381 QTLLVSHSLS-GRPDDRCQ-VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 381 ~vIlVvdshd-~~~~~~~~-i~ll~~G~ii~~g~nkdl 416 (537)
..|+++ +|+ ++++.-++ .+++.+|++++.|++.++
T Consensus 190 iGvLIT-DHNVREtL~i~dRaYIi~~G~vla~G~p~ei 226 (243)
T COG1137 190 IGVLIT-DHNVRETLDICDRAYIISDGKVLAEGSPEEI 226 (243)
T ss_pred ceEEEc-cccHHHHHhhhheEEEEecCeEEecCCHHHH
Confidence 678888 565 56666555 899999999999999987
No 35
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.85 E-value=1.2e-22 Score=225.76 Aligned_cols=261 Identities=15% Similarity=0.097 Sum_probs=179.6
Q ss_pred hhhHHHHHhhhcccccccccccccccCccccccccCCCCCCchhHHHHHHHHHHHHhhhcccccCCCcccC-CCCCCCCC
Q psy16304 94 AEIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAPTFEVCIVSLLVHLMRGILMGIQNVPNFQTS-SVLSDDPA 172 (537)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~m~~~li~~~~l~k~~~~-~~~~~~~~ 172 (537)
.-+.|+..++..+..++.+..++++++++++.+..+.++..+... ...-+.+++++..|+. ..+
T Consensus 280 ~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~----------~~~~I~f~~vsf~y~~~~~v----- 344 (567)
T COG1132 280 RLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDPLKD----------TIGSIEFENVSFSYPGKKPV----- 344 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCCCC----------CCCeEEEEEEEEEcCCCCcc-----
Confidence 345699999999999999999999999999976665555443000 0122566777776664 122
Q ss_pred cchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCc
Q psy16304 173 PTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSE 252 (537)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~ 252 (537)
-+++++.+++|+++||||++||||||+++.|.|. ++|+.| +|.++| .++..++.
T Consensus 345 -------------l~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~----~~~~~G----~I~idg-~dI~~i~~---- 398 (567)
T COG1132 345 -------------LKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRL----YDPTSG----EILIDG-IDIRDISL---- 398 (567)
T ss_pred -------------ccCceEEEcCCCEEEEECCCCCCHHHHHHHHhcc----CCCCCC----eEEECC-EehhhcCH----
Confidence 2345677889999999999999999999999999 999999 999976 77766554
Q ss_pred hhhHHHHhhhhccccCCCCCCC-ccceeeEEee-cCcccccCCccc---ccccCcCCccccCCccEEEeccCccCccchh
Q psy16304 253 DFRTIWKQYLGTVSQTPLGRPD-SRTCQVYLIM-CGVHQVSGIPDE---LTSATHLPLVDFRSVPILVLGLDNAGKSSII 327 (537)
Q Consensus 253 ~~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~D-s~~~~~~~l~~~---l~~~~~l~~~~~~~~~L~llGl~~~gKs~li 327 (537)
..+++.+++|+|++.+|.. ..+++.+.-+ .+.++..+..+. .+.+.+++.. .-..+|..+
T Consensus 399 ---~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g-----~dt~vge~G------- 463 (567)
T COG1132 399 ---DSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDG-----YDTIVGERG------- 463 (567)
T ss_pred ---HHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccc-----ccceecCCC-------
Confidence 3445889999999998875 3343333322 122211111110 0111111110 011444222
Q ss_pred hhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH--HHHHHHHh--cCCEEEEEEeCCCcchhhhhh-hh
Q psy16304 328 KRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR--TIWKQYLG--TVSQTLLVSHSLSGRPDDRCQ-VY 400 (537)
Q Consensus 328 ~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~--~l~~~~~~--~~~~vIlVvdshd~~~~~~~~-i~ 400 (537)
..||||||||+ ++||+++. + |++++|| |++++... .+.+.+.+ +.. +++++ +|...+...++ ++
T Consensus 464 ~~LSgGQrQrl----aiARall~-~--~~ILILDEaTSalD~~tE~~I~~~l~~l~~~r-T~iiI-aHRlsti~~aD~Ii 534 (567)
T COG1132 464 VNLSGGQRQRL----AIARALLR-N--PPILILDEATSALDTETEALIQDALKKLLKGR-TTLII-AHRLSTIKNADRII 534 (567)
T ss_pred ccCCHHHHHHH----HHHHHHhc-C--CCEEEEeccccccCHHhHHHHHHHHHHHhcCC-EEEEE-eccHhHHHhCCEEE
Confidence 34999999999 99999996 5 8999999 99994443 33444432 223 56667 89988888777 99
Q ss_pred hhcCCcEEEEecccchhhh
Q psy16304 401 LMSCNCQVYLISAKNLSNG 419 (537)
Q Consensus 401 ll~~G~ii~~g~nkdl~~~ 419 (537)
++++|+++..|++.+|...
T Consensus 535 Vl~~G~i~e~G~h~eLl~~ 553 (567)
T COG1132 535 VLDNGRIVERGTHEELLAK 553 (567)
T ss_pred EEECCEEEEecCHHHHHHc
Confidence 9999999999999998543
No 36
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.85 E-value=8.9e-23 Score=213.61 Aligned_cols=209 Identities=16% Similarity=0.162 Sum_probs=144.7
Q ss_pred hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304 152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN 231 (537)
Q Consensus 152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t 231 (537)
++.++++.+.|++... ..++++.+.+|++++|+||||||||||+++|+|. ..|+.|
T Consensus 4 ~l~~~~l~~~~~~~~~------------------l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl----~~p~~G-- 59 (353)
T TIGR03265 4 YLSIDNIRKRFGAFTA------------------LKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGL----ERQTAG-- 59 (353)
T ss_pred EEEEEEEEEEeCCeEE------------------EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCC----CCCCce--
Confidence 4667788887654221 2234577889999999999999999999999999 999999
Q ss_pred eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccC--cCCccccC
Q psy16304 232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSAT--HLPLVDFR 309 (537)
Q Consensus 232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~--~l~~~~~~ 309 (537)
+|.++| ..+. +. .. .++.++++||++.+++.++. .+++...+.... .-....+.
T Consensus 60 --~I~i~g-~~~~--~~---~~----~~r~ig~v~Q~~~lfp~~tv------------~eNi~~~~~~~~~~~~~~~~~~ 115 (353)
T TIGR03265 60 --TIYQGG-RDIT--RL---PP----QKRDYGIVFQSYALFPNLTV------------ADNIAYGLKNRGMGRAEVAERV 115 (353)
T ss_pred --EEEECC-EECC--CC---CH----HHCCEEEEeCCcccCCCCcH------------HHHHHHHHHhcCCCHHHHHHHH
Confidence 999987 4332 11 11 13679999999998876554 111111111000 00011123
Q ss_pred CccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEE
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQT 382 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~v 382 (537)
...+..+|+.+.. ...+.+|||||+||+ +++++++. + |++++|| +++++.. ...+..+.++.+.+
T Consensus 116 ~~~l~~l~L~~~~-~~~~~~LSgGq~QRv----aLARaL~~-~--P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~t 187 (353)
T TIGR03265 116 AELLDLVGLPGSE-RKYPGQLSGGQQQRV----ALARALAT-S--PGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVT 187 (353)
T ss_pred HHHHHHcCCCchh-hCChhhCCHHHHHHH----HHHHHHhc-C--CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 3445567877654 445899999999999 99999996 5 8999999 8888322 22333444444566
Q ss_pred EEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchh
Q psy16304 383 LLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLS 417 (537)
Q Consensus 383 IlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~ 417 (537)
++++ +||..+....+ +++|++|+++..|++.++.
T Consensus 188 vi~v-THd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~ 223 (353)
T TIGR03265 188 TIMV-THDQEEALSMADRIVVMNHGVIEQVGTPQEIY 223 (353)
T ss_pred EEEE-cCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 6666 89988776543 9999999999999888764
No 37
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.85 E-value=1.2e-22 Score=230.55 Aligned_cols=262 Identities=14% Similarity=0.072 Sum_probs=174.7
Q ss_pred hhhhhHHHHHhhhcccccccccccccccCccccccccCCCCC-CchhHHHHHHHHHHHHhhhcccccCCCcccCCCCCCC
Q psy16304 92 YKAEIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPA-PTFEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDD 170 (537)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~~~ 170 (537)
+..-..|+..+...+.+++....+++++.++++.+.....+. ++-.. ...+.+++++..|+... .
T Consensus 401 ~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~-----------~~~I~~~nvsf~Y~~~~---~ 466 (686)
T TIGR03797 401 FGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEAKTDPGKL-----------SGAIEVDRVTFRYRPDG---P 466 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcCCCCCC-----------CceEEEEEEEEEcCCCC---c
Confidence 355678999999999999999999999999887544322111 11001 12356777777764321 0
Q ss_pred CCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCC
Q psy16304 171 PAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGG 250 (537)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G 250 (537)
.+-+++++++++|++++|+|+||||||||+++|+|. +.|++| +|.++| .++..++.
T Consensus 467 -------------~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl----~~p~~G----~I~idg-~~i~~~~~-- 522 (686)
T TIGR03797 467 -------------LILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGF----ETPESG----SVFYDG-QDLAGLDV-- 522 (686)
T ss_pred -------------cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCC----EEEECC-EEcCcCCH--
Confidence 123456788889999999999999999999999999 999999 999997 77665554
Q ss_pred CchhhHHHHhhhhccccCCCCCCC-ccceeeEEeecCcccccCCcccc---cccCcCCccccCCccEEEeccCccCccch
Q psy16304 251 SEDFRTIWKQYLGTVSQTPLGRPD-SRTCQVYLIMCGVHQVSGIPDEL---TSATHLPLVDFRSVPILVLGLDNAGKSSI 326 (537)
Q Consensus 251 ~~~~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~Ds~~~~~~~l~~~l---~~~~~l~~~~~~~~~L~llGl~~~gKs~l 326 (537)
..+++.+++|+|++.++.. ..+++.+.-+.+.++...+.+.. +.+..++... -..+|..
T Consensus 523 -----~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~-----dt~ige~------- 585 (686)
T TIGR03797 523 -----QAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGM-----HTVISEG------- 585 (686)
T ss_pred -----HHHHhccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccc-----cccccCC-------
Confidence 3344889999999998765 23332221101111110000000 0011111000 0022322
Q ss_pred hhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH--HHHHHHHHhcCCEEEEEEeCCCcchhhhhh-hhh
Q psy16304 327 IKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ-VYL 401 (537)
Q Consensus 327 i~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l~~~~~~~~~~vIlVvdshd~~~~~~~~-i~l 401 (537)
-..|||||+||+ ++||+++. + |++++|| |++++.. ..+.+.+.+. +.+++++ +|+......++ +++
T Consensus 586 G~~LSGGQrQRi----alARAll~-~--p~iLiLDEpTS~LD~~te~~i~~~L~~~-~~T~IiI-tHr~~~i~~~D~Iiv 656 (686)
T TIGR03797 586 GGTLSGGQRQRL----LIARALVR-K--PRILLFDEATSALDNRTQAIVSESLERL-KVTRIVI-AHRLSTIRNADRIYV 656 (686)
T ss_pred CCCCCHHHHHHH----HHHHHHhc-C--CCEEEEeCCccCCCHHHHHHHHHHHHHh-CCeEEEE-ecChHHHHcCCEEEE
Confidence 234999999999 99999996 5 8999999 9999443 3333444443 3567777 78888887766 899
Q ss_pred hcCCcEEEEecccchh
Q psy16304 402 MSCNCQVYLISAKNLS 417 (537)
Q Consensus 402 l~~G~ii~~g~nkdl~ 417 (537)
+++|+++..|+.+++.
T Consensus 657 l~~G~iv~~G~~~~Ll 672 (686)
T TIGR03797 657 LDAGRVVQQGTYDELM 672 (686)
T ss_pred EECCEEEEECCHHHHH
Confidence 9999999999888774
No 38
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.85 E-value=1.5e-22 Score=225.96 Aligned_cols=261 Identities=16% Similarity=0.118 Sum_probs=169.3
Q ss_pred hhHHHHHhhhcccccccccccccccCccccccccCCCCCCchhHHHHHHHHHHHHhhhcccccCCCcccCCCCCCCCCcc
Q psy16304 95 EIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAPTFEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDDPAPT 174 (537)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~~~~~~~ 174 (537)
-..|+..++..++.++....+.+++.++++.+.... +..+.+. ......-+.+++++..|.+. .
T Consensus 300 ~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~-~~~~~~~-------~~~~~~~i~~~~vsf~~~~~----~---- 363 (588)
T PRK11174 300 FYQPLRDLGTFYHAKAQAVGAAESLVTFLETPLAHP-QQGEKEL-------ASNDPVTIEAEDLEILSPDG----K---- 363 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccc-CCCcccc-------CCCCCceEEEEeeEEeccCC----C----
Confidence 468999999999999999999999999987543211 1110000 00001124555665322110 0
Q ss_pred hhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchh
Q psy16304 175 FENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 254 (537)
Q Consensus 175 ~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~ 254 (537)
.+-+++++++++|++++|+|++|||||||+++|+|. + |++| +|.++| .++..++.
T Consensus 364 ---------~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~----~-p~~G----~I~i~g-~~i~~~~~------ 418 (588)
T PRK11174 364 ---------TLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGF----L-PYQG----SLKING-IELRELDP------ 418 (588)
T ss_pred ---------eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC----C-CCCc----EEEECC-EecccCCH------
Confidence 112456788889999999999999999999999999 9 9999 999997 66655544
Q ss_pred hHHHHhhhhccccCCCCCCC-ccceeeEEe-ecCcccccCCcccc---cccCcCCccccCCccEEEeccCccCccchhhh
Q psy16304 255 RTIWKQYLGTVSQTPLGRPD-SRTCQVYLI-MCGVHQVSGIPDEL---TSATHLPLVDFRSVPILVLGLDNAGKSSIIKR 329 (537)
Q Consensus 255 r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~-Ds~~~~~~~l~~~l---~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~ 329 (537)
..+++.+++|+|++.++.. ..+++.+.- +.+.+++.++.+.. +++..++.... ..+|..+ ..
T Consensus 419 -~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~d-----T~vge~G-------~~ 485 (588)
T PRK11174 419 -ESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLD-----TPIGDQA-------AG 485 (588)
T ss_pred -HHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccc-----cccccCC-------CC
Confidence 3344889999999998876 444444321 12222211111100 01111111000 0233322 34
Q ss_pred hcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH--HHHHHHHhc-CCEEEEEEeCCCcchhhhhh-hhhhc
Q psy16304 330 ILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR--TIWKQYLGT-VSQTLLVSHSLSGRPDDRCQ-VYLMS 403 (537)
Q Consensus 330 LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~--~l~~~~~~~-~~~vIlVvdshd~~~~~~~~-i~ll~ 403 (537)
|||||+||+ ++||+++. + |++++|| |++++... .+.+.+.+. .+.+++++ +|.......++ +++++
T Consensus 486 LSGGQrQRi----alARAll~-~--~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiI-tHrl~~i~~aD~Iivl~ 557 (588)
T PRK11174 486 LSVGQAQRL----ALARALLQ-P--CQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMV-THQLEDLAQWDQIWVMQ 557 (588)
T ss_pred CCHHHHHHH----HHHHHHhc-C--CCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEE-ecChHHHHhCCEEEEEe
Confidence 999999999 99999996 5 8999999 99994433 333444332 34566666 78887777766 89999
Q ss_pred CCcEEEEecccchh
Q psy16304 404 CNCQVYLISAKNLS 417 (537)
Q Consensus 404 ~G~ii~~g~nkdl~ 417 (537)
+|+++..|+.+++.
T Consensus 558 ~G~i~e~G~~~eL~ 571 (588)
T PRK11174 558 DGQIVQQGDYAELS 571 (588)
T ss_pred CCeEeecCCHHHHH
Confidence 99999999888874
No 39
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.85 E-value=2e-22 Score=207.06 Aligned_cols=209 Identities=17% Similarity=0.182 Sum_probs=140.0
Q ss_pred hhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceee
Q psy16304 151 ILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF 230 (537)
Q Consensus 151 ~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~ 230 (537)
.++.++++.+.|++... ..+++|.+.+|+++||+|+||||||||+++|+|. ..|++|
T Consensus 3 ~~i~~~~l~~~~~~~~~------------------l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl----~~p~~G- 59 (303)
T TIGR01288 3 VAIDLVGVSKSYGDKVV------------------VNDLSFTIARGECFGLLGPNGAGKSTIARMLLGM----ISPDRG- 59 (303)
T ss_pred cEEEEEeEEEEeCCeEE------------------EcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCC----CCCCce-
Confidence 35677888887764322 2345677889999999999999999999999999 899999
Q ss_pred eeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCc---cc
Q psy16304 231 NRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPL---VD 307 (537)
Q Consensus 231 t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~---~~ 307 (537)
++.++| .++.. . ....+..+++++|++.+++..+.. + ++... ........ ..
T Consensus 60 ---~i~~~g-~~~~~-----~---~~~~~~~i~~v~q~~~~~~~~tv~-----e-------~l~~~-~~~~~~~~~~~~~ 114 (303)
T TIGR01288 60 ---KITVLG-EPVPS-----R---ARLARVAIGVVPQFDNLDPEFTVR-----E-------NLLVF-GRYFGMSTREIEA 114 (303)
T ss_pred ---EEEECC-EECcc-----c---HHHHhhcEEEEeccccCCcCCcHH-----H-------HHHHH-HHHcCCCHHHHHH
Confidence 898887 43311 1 122346799999998765443320 0 00000 00000000 01
Q ss_pred cCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH--HHHH---HHHHhcCC
Q psy16304 308 FRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIW---KQYLGTVS 380 (537)
Q Consensus 308 ~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l~---~~~~~~~~ 380 (537)
.....+..+|+.... ...+.+|||||+||+ +++++++. + |++++|| |+|++.. ..++ ..+.+ .+
T Consensus 115 ~~~~ll~~~~l~~~~-~~~~~~LSgG~~qrv----~la~al~~-~--p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g 185 (303)
T TIGR01288 115 VIPSLLEFARLESKA-DVRVALLSGGMKRRL----TLARALIN-D--PQLLILDEPTTGLDPHARHLIWERLRSLLA-RG 185 (303)
T ss_pred HHHHHHHHCCChhHh-cCchhhCCHHHHHHH----HHHHHHhc-C--CCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CC
Confidence 112233456766543 445899999999999 99999996 5 8999999 9999332 3333 33333 24
Q ss_pred EEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchh
Q psy16304 381 QTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLS 417 (537)
Q Consensus 381 ~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~ 417 (537)
.+++++ +|+.......+ ++++++|+++..+.+.++.
T Consensus 186 ~til~~-sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 223 (303)
T TIGR01288 186 KTILLT-THFMEEAERLCDRLCVLESGRKIAEGRPHALI 223 (303)
T ss_pred CEEEEE-CCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 567777 99998887544 8999999999888877664
No 40
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.85 E-value=1.6e-22 Score=211.59 Aligned_cols=208 Identities=15% Similarity=0.114 Sum_probs=142.7
Q ss_pred cccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeee
Q psy16304 153 MGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNR 232 (537)
Q Consensus 153 i~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~ 232 (537)
+.++++.+.|++.. +..++++.+.+|++++|+||||||||||+++|+|. ..|++|
T Consensus 3 L~i~~l~~~~~~~~------------------~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl----~~p~~G--- 57 (353)
T PRK10851 3 IEIANIKKSFGRTQ------------------VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGL----EHQTSG--- 57 (353)
T ss_pred EEEEEEEEEeCCeE------------------EEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCc---
Confidence 45677777765321 22345677889999999999999999999999999 999999
Q ss_pred EEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCccccccc---CcCC---cc
Q psy16304 233 ARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSA---THLP---LV 306 (537)
Q Consensus 233 ~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~---~~l~---~~ 306 (537)
+|.++| .++.. ... .++.++++||++.+++.++.. +++...+... .... ..
T Consensus 58 -~I~i~g-~~i~~-----~~~----~~r~i~~v~Q~~~l~p~~tv~------------eni~~~~~~~~~~~~~~~~~~~ 114 (353)
T PRK10851 58 -HIRFHG-TDVSR-----LHA----RDRKVGFVFQHYALFRHMTVF------------DNIAFGLTVLPRRERPNAAAIK 114 (353)
T ss_pred -EEEECC-EECCC-----CCH----HHCCEEEEecCcccCCCCcHH------------HHHHhhhhhcccccCCCHHHHH
Confidence 999987 44321 111 125799999998877654431 1111100000 0000 01
Q ss_pred ccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhh-----HHHHHHHHHhcC
Q psy16304 307 DFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSED-----FRTIWKQYLGTV 379 (537)
Q Consensus 307 ~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~-----~~~l~~~~~~~~ 379 (537)
.+....+..+|+.+.. ...+.+|||||+||+ +++++++. + |+++++| |++++. ....+.++.++.
T Consensus 115 ~~~~~~l~~~~L~~~~-~~~~~~LSgGq~QRv----alArAL~~-~--P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~ 186 (353)
T PRK10851 115 AKVTQLLEMVQLAHLA-DRYPAQLSGGQKQRV----ALARALAV-E--PQILLLDEPFGALDAQVRKELRRWLRQLHEEL 186 (353)
T ss_pred HHHHHHHHHcCCchhh-hCChhhCCHHHHHHH----HHHHHHhc-C--CCEEEEeCCCccCCHHHHHHHHHHHHHHHHhc
Confidence 1223345567777654 455899999999999 99999996 5 8999999 999832 223334444443
Q ss_pred CEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchh
Q psy16304 380 SQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLS 417 (537)
Q Consensus 380 ~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~ 417 (537)
+.+++++ +||..++...+ +++|++|+++..+.+.++.
T Consensus 187 g~tii~v-THd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 187 KFTSVFV-THDQEEAMEVADRVVVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred CCEEEEE-eCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 4566666 89988776544 9999999999998888763
No 41
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.85 E-value=1.7e-22 Score=230.17 Aligned_cols=269 Identities=12% Similarity=-0.008 Sum_probs=175.6
Q ss_pred hhhhHHHHHhhhcccccccccccccccCccccccccCCCCCC--chhHHHHHHHHHHHHhhhcccccCCCcccCCCCCCC
Q psy16304 93 KAEIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAP--TFEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDD 170 (537)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--p~~~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~~~ 170 (537)
..-..|+..+...+.+++....+++++.++++.+.......+ +-.. ....-.....+.+++++..|+... .
T Consensus 420 ~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~----~~~~~~~~~~I~~~~vsf~y~~~~---~ 492 (710)
T TIGR03796 420 SSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAG----SEPSPRLSGYVELRNITFGYSPLE---P 492 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccccccc----cccCCCCCCeEEEEEEEEecCCCC---C
Confidence 346789999999999999999999999999875433221110 0000 000000012356677777765321 0
Q ss_pred CCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCC
Q psy16304 171 PAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGG 250 (537)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G 250 (537)
.+-.++++.+++|++++|+|++|||||||+++|+|. +.|+.| +|.++| .++..++.
T Consensus 493 -------------~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl----~~p~~G----~I~idg-~~i~~~~~-- 548 (710)
T TIGR03796 493 -------------PLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGL----YQPWSG----EILFDG-IPREEIPR-- 548 (710)
T ss_pred -------------CcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcC----CCCCCc----EEEECC-EeHHHCCH--
Confidence 123346788889999999999999999999999999 999999 999997 66554443
Q ss_pred CchhhHHHHhhhhccccCCCCCCC-ccceeeEEe-ecCcccccCCcccc---cccCcCCccccCCccEEEeccCccCccc
Q psy16304 251 SEDFRTIWKQYLGTVSQTPLGRPD-SRTCQVYLI-MCGVHQVSGIPDEL---TSATHLPLVDFRSVPILVLGLDNAGKSS 325 (537)
Q Consensus 251 ~~~~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~-Ds~~~~~~~l~~~l---~~~~~l~~~~~~~~~L~llGl~~~gKs~ 325 (537)
..+++.+++|+|++.++.. ..+++.+.- +.+.++..++.+.. +.+..++... -..+|..+
T Consensus 549 -----~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl-----~t~i~e~G----- 613 (710)
T TIGR03796 549 -----EVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGY-----DAELAEGG----- 613 (710)
T ss_pred -----HHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcc-----cceeccCC-----
Confidence 2344889999999998865 333332211 11111111111100 0111111000 01233222
Q ss_pred hhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH--HHHHHHHhcCCEEEEEEeCCCcchhhhhh-hh
Q psy16304 326 IIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR--TIWKQYLGTVSQTLLVSHSLSGRPDDRCQ-VY 400 (537)
Q Consensus 326 li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~--~l~~~~~~~~~~vIlVvdshd~~~~~~~~-i~ 400 (537)
..|||||+||+ ++||+++. + |++++|| |++++... .+.+.+.+ .+.+++++ +|+......++ ++
T Consensus 614 --~~LSGGQrQRi----aLARall~-~--p~iliLDEptS~LD~~te~~i~~~l~~-~~~T~Iii-tHrl~~i~~~D~Ii 682 (710)
T TIGR03796 614 --ANLSGGQRQRL----EIARALVR-N--PSILILDEATSALDPETEKIIDDNLRR-RGCTCIIV-AHRLSTIRDCDEII 682 (710)
T ss_pred --CCCCHHHHHHH----HHHHHHhh-C--CCEEEEECccccCCHHHHHHHHHHHHh-cCCEEEEE-ecCHHHHHhCCEEE
Confidence 34999999999 99999996 5 8999999 99994433 34455544 45677777 88888887766 99
Q ss_pred hhcCCcEEEEecccchhh
Q psy16304 401 LMSCNCQVYLISAKNLSN 418 (537)
Q Consensus 401 ll~~G~ii~~g~nkdl~~ 418 (537)
++++|+++..|+.+++.+
T Consensus 683 vl~~G~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 683 VLERGKVVQRGTHEELWA 700 (710)
T ss_pred EEeCCEEEEecCHHHHHH
Confidence 999999999999888743
No 42
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.84 E-value=5.5e-22 Score=203.74 Aligned_cols=193 Identities=17% Similarity=0.174 Sum_probs=132.8
Q ss_pred cccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcc
Q psy16304 186 PTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTV 265 (537)
Q Consensus 186 ~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v 265 (537)
..++++.+.+|+++||+||||||||||+++|+|. +.|++| +|.++| .++.. . ...++..++++
T Consensus 9 l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl----~~p~~G----~i~~~g-~~~~~-----~---~~~~~~~i~~~ 71 (302)
T TIGR01188 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTL----LRPTSG----TARVAG-YDVVR-----E---PRKVRRSIGIV 71 (302)
T ss_pred EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC----CCCCce----EEEECC-EEccc-----C---HHHHHhhcEEe
Confidence 3456788889999999999999999999999999 999999 999887 43321 1 12234679999
Q ss_pred ccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC---ccccCCccEEEeccCccCccchhhhhcCCCceeeeccc
Q psy16304 266 SQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTV 342 (537)
Q Consensus 266 ~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti 342 (537)
+|++.+++.++.. +++... ....... ...+....+..+|+.... ...+.+|||||+||+
T Consensus 72 ~q~~~~~~~~tv~------------e~l~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgG~~qrv---- 133 (302)
T TIGR01188 72 PQYASVDEDLTGR------------ENLEMM-GRLYGLPKDEAEERAEELLELFELGEAA-DRPVGTYSGGMRRRL---- 133 (302)
T ss_pred cCCCCCCCCCcHH------------HHHHHH-HHHcCCCHHHHHHHHHHHHHHcCChhHh-CCchhhCCHHHHHHH----
Confidence 9998766543320 001000 0000000 011123345567776543 445899999999999
Q ss_pred ccccceeccCCceEEEEEe--cCchhh--HHHHHH---HHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecc
Q psy16304 343 GFNRARVEYGNKYEVFLYD--LGGSED--FRTIWK---QYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISA 413 (537)
Q Consensus 343 ~la~all~~~e~p~lllLD--T~Gl~~--~~~l~~---~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~n 413 (537)
+++++++. + |++++|| |+|++. ...+|+ .+.+. +.+++++ +|++......+ ++++++|+++..+..
T Consensus 134 ~la~al~~-~--p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvi~~-sH~~~~~~~~~d~v~~l~~G~i~~~g~~ 208 (302)
T TIGR01188 134 DIAASLIH-Q--PDVLFLDEPTTGLDPRTRRAIWDYIRALKEE-GVTILLT-THYMEEADKLCDRIAIIDHGRIIAEGTP 208 (302)
T ss_pred HHHHHHhc-C--CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEE-CCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 99999997 5 8999999 999933 333343 33333 4567776 89998887544 899999999988887
Q ss_pred cchhh
Q psy16304 414 KNLSN 418 (537)
Q Consensus 414 kdl~~ 418 (537)
.++..
T Consensus 209 ~~l~~ 213 (302)
T TIGR01188 209 EELKR 213 (302)
T ss_pred HHHHH
Confidence 77644
No 43
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=1e-22 Score=212.55 Aligned_cols=196 Identities=17% Similarity=0.132 Sum_probs=131.8
Q ss_pred ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304 187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS 266 (537)
Q Consensus 187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~ 266 (537)
..++|.+.+|++++|+|+||||||||+++|+|. ..|++| +|.++| .++..++. .. ...+++.++++|
T Consensus 22 ~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl----~~p~~G----~I~~~g-~~i~~~~~---~~-~~~~~~~ig~v~ 88 (343)
T PRK11153 22 NNVSLHIPAGEIFGVIGASGAGKSTLIRCINLL----ERPTSG----RVLVDG-QDLTALSE---KE-LRKARRQIGMIF 88 (343)
T ss_pred EeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC----CCCCce----EEEECC-EECCcCCH---HH-HHHHhcCEEEEe
Confidence 445678889999999999999999999999999 999999 999887 44322111 11 112346799999
Q ss_pred cCCCCCCCccceeeEEeecCcccccCCcccccccCcCC---ccccCCccEEEeccCccCccchhhhhcCCCceeeecccc
Q psy16304 267 QTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG 343 (537)
Q Consensus 267 Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~ 343 (537)
|++.++...+. .+++...+.. .... ...+....+..+|+.... ...+.+|||||+||+ +
T Consensus 89 q~~~l~~~~tv------------~eni~~~~~~-~~~~~~~~~~~~~~~l~~~gL~~~~-~~~~~~LSgGq~qRv----~ 150 (343)
T PRK11153 89 QHFNLLSSRTV------------FDNVALPLEL-AGTPKAEIKARVTELLELVGLSDKA-DRYPAQLSGGQKQRV----A 150 (343)
T ss_pred CCCccCCCCcH------------HHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCchhh-hCChhhCCHHHHHHH----H
Confidence 99876654332 0011000000 0010 001122334466776543 455899999999999 9
Q ss_pred cccceeccCCceEEEEEe--cCchhhH--HHH---HHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEeccc
Q psy16304 344 FNRARVEYGNKYEVFLYD--LGGSEDF--RTI---WKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAK 414 (537)
Q Consensus 344 la~all~~~e~p~lllLD--T~Gl~~~--~~l---~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nk 414 (537)
++++++. + |++++|| |+|++.. ..+ +..+.++.+.+++++ +|++......+ ++++++|+++..+...
T Consensus 151 lAraL~~-~--p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilv-tH~~~~i~~~~d~v~~l~~G~i~~~g~~~ 226 (343)
T PRK11153 151 IARALAS-N--PKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLI-THEMDVVKRICDRVAVIDAGRLVEQGTVS 226 (343)
T ss_pred HHHHHHc-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhCCEEEEEECCEEEEEcCHH
Confidence 9999997 5 8999999 9999433 222 334433334567777 89988876533 8999999999888877
Q ss_pred chh
Q psy16304 415 NLS 417 (537)
Q Consensus 415 dl~ 417 (537)
++.
T Consensus 227 ~~~ 229 (343)
T PRK11153 227 EVF 229 (343)
T ss_pred HHH
Confidence 663
No 44
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.84 E-value=2.5e-22 Score=211.57 Aligned_cols=208 Identities=14% Similarity=0.129 Sum_probs=144.0
Q ss_pred hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304 152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN 231 (537)
Q Consensus 152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t 231 (537)
++.++++.+.|++..+ ..++++.+.+|++++|+||||||||||+++|+|. ..|+.|
T Consensus 14 ~L~l~~l~~~~~~~~~------------------l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl----~~p~~G-- 69 (375)
T PRK09452 14 LVELRGISKSFDGKEV------------------ISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGF----ETPDSG-- 69 (375)
T ss_pred eEEEEEEEEEECCeEE------------------EeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCC----CCCCce--
Confidence 4677888887764222 2234577889999999999999999999999999 999999
Q ss_pred eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCc---ccc
Q psy16304 232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPL---VDF 308 (537)
Q Consensus 232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~---~~~ 308 (537)
+|.++| ..+. .... .++.++++||++.+++.++. .+++...+.. ..... ..+
T Consensus 70 --~I~~~g-~~i~-----~~~~----~~r~ig~vfQ~~~lfp~ltv------------~eNi~~~l~~-~~~~~~~~~~~ 124 (375)
T PRK09452 70 --RIMLDG-QDIT-----HVPA----ENRHVNTVFQSYALFPHMTV------------FENVAFGLRM-QKTPAAEITPR 124 (375)
T ss_pred --EEEECC-EECC-----CCCH----HHCCEEEEecCcccCCCCCH------------HHHHHHHHhh-cCCCHHHHHHH
Confidence 999987 4332 1111 23679999999988876554 1111111110 00100 112
Q ss_pred CCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCE
Q psy16304 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQ 381 (537)
Q Consensus 309 ~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~ 381 (537)
....+..+|+.+.. .+.+.+|||||+||+ +++++++. + |++++|| +++++.. ...++.+.++.+.
T Consensus 125 ~~~~l~~~~l~~~~-~~~p~~LSgGq~QRV----aLARaL~~-~--P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~ 196 (375)
T PRK09452 125 VMEALRMVQLEEFA-QRKPHQLSGGQQQRV----AIARAVVN-K--PKVLLLDESLSALDYKLRKQMQNELKALQRKLGI 196 (375)
T ss_pred HHHHHHHcCCchhh-hCChhhCCHHHHHHH----HHHHHHhc-C--CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCC
Confidence 23445567877654 555899999999999 99999996 4 8999999 8888322 2233444444455
Q ss_pred EEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchh
Q psy16304 382 TLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLS 417 (537)
Q Consensus 382 vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~ 417 (537)
+++++ +||..+....+ +++|++|++...+++.++.
T Consensus 197 tiI~v-THd~~ea~~laDri~vl~~G~i~~~g~~~~i~ 233 (375)
T PRK09452 197 TFVFV-THDQEEALTMSDRIVVMRDGRIEQDGTPREIY 233 (375)
T ss_pred EEEEE-eCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 66666 88888765433 9999999999999887763
No 45
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.84 E-value=3e-22 Score=209.77 Aligned_cols=199 Identities=15% Similarity=0.173 Sum_probs=138.4
Q ss_pred cccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcc
Q psy16304 186 PTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTV 265 (537)
Q Consensus 186 ~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v 265 (537)
..+++|.+.+|++++|+|+||||||||+++|+|. +.|+.| +|.++| .++..++. ...+...++.++++
T Consensus 9 l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl----~~p~~G----~I~i~G-~~i~~~~~---~~~~~~rr~~i~~v 76 (363)
T TIGR01186 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRL----IEPTAG----QIFIDG-ENIMKQSP---VELREVRRKKIGMV 76 (363)
T ss_pred EEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCC----CCCCce----EEEECC-EECCcCCH---HHHHHHHhCcEEEE
Confidence 3556788899999999999999999999999999 999999 999987 54433222 22222335689999
Q ss_pred ccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC---ccccCCccEEEeccCccCccchhhhhcCCCceeeeccc
Q psy16304 266 SQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTV 342 (537)
Q Consensus 266 ~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti 342 (537)
||.+.+++.++.. +++...... ..+. ...+....+..+|+.... ...+.+|||||+||+
T Consensus 77 ~Q~~~l~~~~TV~------------eNi~~~~~~-~~~~~~~~~~~~~~~l~~vgL~~~~-~~~p~~LSGGq~QRV---- 138 (363)
T TIGR01186 77 FQQFALFPHMTIL------------QNTSLGPEL-LGWPEQERKEKALELLKLVGLEEYE-HRYPDELSGGMQQRV---- 138 (363)
T ss_pred ECCCcCCCCCCHH------------HHHHHHHHH-cCCCHHHHHHHHHHHHHhcCCchhh-hCChhhCCHHHHHHH----
Confidence 9999988765441 111100000 0111 111233445577886554 556999999999999
Q ss_pred ccccceeccCCceEEEEEe--cCchhhHH--HHH---HHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecc
Q psy16304 343 GFNRARVEYGNKYEVFLYD--LGGSEDFR--TIW---KQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISA 413 (537)
Q Consensus 343 ~la~all~~~e~p~lllLD--T~Gl~~~~--~l~---~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~n 413 (537)
+++++++. + |+++++| +++++... .+. ..+.+..+.+++++ +||..+....+ +++|++|+++..|++
T Consensus 139 ~lARAL~~-~--p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~v-THd~~ea~~~~drI~vl~~G~iv~~g~~ 214 (363)
T TIGR01186 139 GLARALAA-E--PDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFI-THDLDEAIRIGDRIVIMKAGEIVQVGTP 214 (363)
T ss_pred HHHHHHhc-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhCCEEEEEeCCEEEeeCCH
Confidence 99999996 5 8999999 88984332 222 23333334566666 89988765533 999999999999988
Q ss_pred cchhh
Q psy16304 414 KNLSN 418 (537)
Q Consensus 414 kdl~~ 418 (537)
+++..
T Consensus 215 ~ei~~ 219 (363)
T TIGR01186 215 DEILR 219 (363)
T ss_pred HHHHh
Confidence 87643
No 46
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.84 E-value=3.4e-22 Score=209.70 Aligned_cols=191 Identities=16% Similarity=0.165 Sum_probs=134.8
Q ss_pred ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCce--eeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhc
Q psy16304 187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTV--GFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGT 264 (537)
Q Consensus 187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~--G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~ 264 (537)
.++++.+.+|++++|+|||||||||||++|+|. ..|++ | ++.++| ..+. .... .++.+++
T Consensus 22 ~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl----~~p~~~~G----~i~~~g-~~~~-----~~~~----~~r~ig~ 83 (362)
T TIGR03258 22 DDLSLEIEAGELLALIGKSGCGKTTLLRAIAGF----VKAAGLTG----RIAIAD-RDLT-----HAPP----HKRGLAL 83 (362)
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCCCE----EEEECC-EECC-----CCCH----HHCCEEE
Confidence 345677889999999999999999999999999 99999 9 999887 4331 1111 2367999
Q ss_pred cccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC---ccccCCccEEEeccCccCccchhhhhcCCCceeeecc
Q psy16304 265 VSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPT 341 (537)
Q Consensus 265 v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~t 341 (537)
+||++.+++.++. .+++...+.. .... ...+....+..+|+.+.. .+.+.+|||||+||+
T Consensus 84 vfQ~~~l~p~~tv------------~enl~~~l~~-~~~~~~~~~~~v~~~l~~~gL~~~~-~~~~~~LSgGq~QRv--- 146 (362)
T TIGR03258 84 LFQNYALFPHLKV------------EDNVAFGLRA-QKMPKADIAERVADALKLVGLGDAA-AHLPAQLSGGMQQRI--- 146 (362)
T ss_pred EECCcccCCCCcH------------HHHHHHHHHH-cCCCHHHHHHHHHHHHHhcCCCchh-hCChhhCCHHHHHHH---
Confidence 9999988776554 1111111110 0011 111233445677887664 556999999999999
Q ss_pred cccccceeccCCceEEEEEe--cCchhhH--HHHH---HHHHhcC-CEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEe
Q psy16304 342 VGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIW---KQYLGTV-SQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLI 411 (537)
Q Consensus 342 i~la~all~~~e~p~lllLD--T~Gl~~~--~~l~---~~~~~~~-~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g 411 (537)
+++++++. + |++++|| +++++.. ..++ +.+.++. +.+++++ +||..+....+ +++|++|+++..+
T Consensus 147 -aLARAL~~-~--P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~v-THd~~ea~~l~dri~vl~~G~i~~~g 221 (362)
T TIGR03258 147 -AIARAIAI-E--PDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCV-THDQDDALTLADKAGIMKDGRLAAHG 221 (362)
T ss_pred -HHHHHHhc-C--CCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEE-eCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 99999996 5 8999999 8998322 2222 3444443 4566666 89988776533 9999999999999
Q ss_pred cccchh
Q psy16304 412 SAKNLS 417 (537)
Q Consensus 412 ~nkdl~ 417 (537)
++.++.
T Consensus 222 ~~~~~~ 227 (362)
T TIGR03258 222 EPQALY 227 (362)
T ss_pred CHHHHH
Confidence 988774
No 47
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.84 E-value=2.2e-22 Score=244.13 Aligned_cols=299 Identities=17% Similarity=0.085 Sum_probs=183.2
Q ss_pred cccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcc
Q psy16304 186 PTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTV 265 (537)
Q Consensus 186 ~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v 265 (537)
..++++.+.+|++++|+|+||||||||+++|+|. ..|++| ++.++| .++.. . ....++.+|++
T Consensus 946 L~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGL----l~PtsG----~I~i~G-~dI~~-------~-~~~~r~~IG~~ 1008 (2272)
T TIGR01257 946 VDRLNITFYENQITAFLGHNGAGKTTTLSILTGL----LPPTSG----TVLVGG-KDIET-------N-LDAVRQSLGMC 1008 (2272)
T ss_pred EEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcC----CCCCce----EEEECC-EECcc-------h-HHHHhhcEEEE
Confidence 4556788889999999999999999999999999 999999 898887 44421 1 12234679999
Q ss_pred ccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC---ccccCCccEEEeccCccCccchhhhhcCCCceeeeccc
Q psy16304 266 SQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTV 342 (537)
Q Consensus 266 ~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti 342 (537)
+|+..+++.++.. +++... ..+.+.. ...+....+..+|+.+.. ...+.+|||||+||+
T Consensus 1009 pQ~~~L~~~LTV~------------E~L~f~-~~lkg~~~~~~~~~v~~lL~~vgL~~~~-~~~~~~LSGGqKQRL---- 1070 (2272)
T TIGR01257 1009 PQHNILFHHLTVA------------EHILFY-AQLKGRSWEEAQLEMEAMLEDTGLHHKR-NEEAQDLSGGMQRKL---- 1070 (2272)
T ss_pred ecCCcCCCCCCHH------------HHHHHH-HHhcCCCHHHHHHHHHHHHHHcCCchhh-cCChhhCCHHHHHHH----
Confidence 9998766544331 111100 0001110 011223345567877654 455899999999999
Q ss_pred ccccceeccCCceEEEEEe--cCch--hhHHHHHHHHHhc-CCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccc
Q psy16304 343 GFNRARVEYGNKYEVFLYD--LGGS--EDFRTIWKQYLGT-VSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKN 415 (537)
Q Consensus 343 ~la~all~~~e~p~lllLD--T~Gl--~~~~~l~~~~~~~-~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkd 415 (537)
++|++++. + |++++|| |+|+ ...+.+|+.+.+. .+.+|+++ +|++++.+..+ +++|++|+++..|++..
T Consensus 1071 sLArALi~-~--PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIlt-THdmdea~~laDrI~iL~~GkL~~~Gs~~~ 1146 (2272)
T TIGR01257 1071 SVAIAFVG-D--AKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMS-THHMDEADLLGDRIAIISQGRLYCSGTPLF 1146 (2272)
T ss_pred HHHHHHHc-C--CCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEE-ECCHHHHHHhCCEEEEEECCEEEEecCHHH
Confidence 99999996 5 8999999 9999 3445555443332 23466666 89988887544 89999999999999888
Q ss_pred hhhhhccchhhhhhhhhh-HHhhcccc-ccccCCCCCccc---------c------ccchhhhh---c---cccCc-CCC
Q psy16304 416 LSNGFKKSERDETNISNF-QIKNSSEN-LQDNNTSDNHDS---------K------KKQPRKRK---K---KVAPL-NTD 471 (537)
Q Consensus 416 l~~~~~~~~~~~~~le~~-~~~~~~~~-l~~~~~~~~~~~---------~------~~~~~~r~---k---~~~~l-~~~ 471 (537)
+++++............. ....+..+ ...........+ . ........ + ..+.. ..+
T Consensus 1147 Lk~~~g~gy~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~iP~a~l~~~~g 1226 (2272)
T TIGR01257 1147 LKNCFGTGFYLTLVRKMKNIQSQRGGCEGTCSCTSKGFSTRCPARVDEITPEQVLDGDVNELMDLVYHHVPEAKLVECIG 1226 (2272)
T ss_pred HHHhcCCcEEEEEEecccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHhCCCcEEEeccC
Confidence 877665432111100000 00000000 000000000000 0 00000000 0 00011 124
Q ss_pred CCceeecCcccc-CC-CceEEEeecccccccccCCCcCC-chHHHHHHHHhhhhh
Q psy16304 472 DETELSLPPLRL-LG-RNVTHTDSNQEQRCLNLSSDPLG-TGAFNVLHAIATDAA 523 (537)
Q Consensus 472 ~~~~l~fp~~~~-~g-~~v~~~e~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 523 (537)
.+..+.+|.... .+ -..+.-+|++.+..|||.+--++ +||||||++++.+.+
T Consensus 1227 ~el~y~LP~~~~~~~~f~~lf~~Le~~~~~lgi~sygis~tTLEeVFlkv~~~~~ 1281 (2272)
T TIGR01257 1227 QELIFLLPNKNFKQRAYASLFRELEETLADLGLSSFGISDTPLEEIFLKVTEDAD 1281 (2272)
T ss_pred CEEEEEecccccccchHHHHHHHHHhhHhhCCCceEEeecCCHHHHHHHhhhhcc
Confidence 455566665432 12 25677889999999999999999 999999999997754
No 48
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.84 E-value=3.4e-22 Score=227.69 Aligned_cols=270 Identities=11% Similarity=0.088 Sum_probs=176.1
Q ss_pred eccch-hhhhHHHHHhhhcccccccccccccccCccccccccCCCCCCchhHHHHHHHHHHHHhhhcccccCCCcccCCC
Q psy16304 88 LYNMY-KAEIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAPTFEVCIVSLLVHLMRGILMGIQNVPNFQTSSV 166 (537)
Q Consensus 88 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~m~~~li~~~~l~k~~~~~~ 166 (537)
.|.+| ...+.|+..+...++.++....+++++.++++.+....++..+... . . ....+.+++++..|++..
T Consensus 416 a~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~---~---~--~~~~I~~~~vsf~y~~~~ 487 (708)
T TIGR01193 416 TFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKKKRTEL---N---N--LNGDIVINDVSYSYGYGS 487 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccCC---C---C--CCCcEEEEEEEEEcCCCC
Confidence 34444 3456899999999999999999999999998754432211110000 0 0 012356677777765211
Q ss_pred CCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEe
Q psy16304 167 LSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLY 246 (537)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~ 246 (537)
.+-.++++.+++|++++|+|+||||||||+++|+|. +.|+.| +|.++| .++..+
T Consensus 488 -----------------~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl----~~p~~G----~I~idg-~~i~~~ 541 (708)
T TIGR01193 488 -----------------NILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGF----FQARSG----EILLNG-FSLKDI 541 (708)
T ss_pred -----------------cceeceeEEECCCCEEEEECCCCCCHHHHHHHHhcc----CCCCCc----EEEECC-EEHHHc
Confidence 012356688889999999999999999999999999 999999 999997 666544
Q ss_pred ecCCCchhhHHHHhhhhccccCCCCCCC-ccceeeEEe--ecCcccccCCcccc---cccCcCCccccCCccEEEeccCc
Q psy16304 247 DLGGSEDFRTIWKQYLGTVSQTPLGRPD-SRTCQVYLI--MCGVHQVSGIPDEL---TSATHLPLVDFRSVPILVLGLDN 320 (537)
Q Consensus 247 D~~G~~~~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~--Ds~~~~~~~l~~~l---~~~~~l~~~~~~~~~L~llGl~~ 320 (537)
+. ..+++.+++|+|++.++.. ..+++.+.. +.+.++..++.+.. +.+..++.... ..+|..
T Consensus 542 ~~-------~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gld-----t~i~e~- 608 (708)
T TIGR01193 542 DR-------HTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQ-----TELSEE- 608 (708)
T ss_pred CH-------HHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccC-----cEecCC-
Confidence 43 3344889999999998765 334333321 11111111110000 01111110000 022222
Q ss_pred cCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH--HHHHHHHhcCCEEEEEEeCCCcchhhh
Q psy16304 321 AGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR--TIWKQYLGTVSQTLLVSHSLSGRPDDR 396 (537)
Q Consensus 321 ~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~--~l~~~~~~~~~~vIlVvdshd~~~~~~ 396 (537)
-..|||||+||+ ++||+++. + |++++|| |++++... .+.+.+.+..+.+++++ +|+......
T Consensus 609 ------G~~LSgGQrQRi----alARall~-~--p~iliLDE~Ts~LD~~te~~i~~~L~~~~~~T~Iii-tHr~~~~~~ 674 (708)
T TIGR01193 609 ------GSSISGGQKQRI----ALARALLT-D--SKVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFV-AHRLSVAKQ 674 (708)
T ss_pred ------CCCCCHHHHHHH----HHHHHHhh-C--CCEEEEeCccccCCHHHHHHHHHHHHHhcCCEEEEE-ecchHHHHc
Confidence 234999999999 99999996 5 8999999 99994433 33344433223567777 888888777
Q ss_pred hh-hhhhcCCcEEEEecccchhh
Q psy16304 397 CQ-VYLMSCNCQVYLISAKNLSN 418 (537)
Q Consensus 397 ~~-i~ll~~G~ii~~g~nkdl~~ 418 (537)
++ ++++++|+++..|+..++.+
T Consensus 675 ~D~i~~l~~G~i~~~G~~~~L~~ 697 (708)
T TIGR01193 675 SDKIIVLDHGKIIEQGSHDELLD 697 (708)
T ss_pred CCEEEEEECCEEEEECCHHHHHh
Confidence 66 99999999999998887743
No 49
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=3.2e-22 Score=197.73 Aligned_cols=213 Identities=16% Similarity=0.121 Sum_probs=134.1
Q ss_pred hhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceee
Q psy16304 151 ILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF 230 (537)
Q Consensus 151 ~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~ 230 (537)
.++.++++.+.|+.... . ..+-..+++.+.+|++++|+|+||||||||+++|+|. ..|++|
T Consensus 4 ~~l~~~~l~~~~~~~~~----~----------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl----~~~~~G- 64 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSV----Q----------TDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGL----DTPTSG- 64 (233)
T ss_pred ceEEEEeEEEEcCCCCc----c----------eeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcC----CCCCce-
Confidence 35667788887653210 0 0122345677889999999999999999999999999 999999
Q ss_pred eeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC---ccc
Q psy16304 231 NRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVD 307 (537)
Q Consensus 231 t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~ 307 (537)
+|.++| .++..++. .......+..+++++|++.+++..+.. +++...+. +.... ...
T Consensus 65 ---~i~~~g-~~i~~~~~---~~~~~~~~~~i~~v~q~~~~~~~~tv~------------e~l~~~~~-~~~~~~~~~~~ 124 (233)
T PRK11629 65 ---DVIFNG-QPMSKLSS---AAKAELRNQKLGFIYQFHHLLPDFTAL------------ENVAMPLL-IGKKKPAEINS 124 (233)
T ss_pred ---EEEECC-EEcCcCCH---HHHHHHHhccEEEEecCcccCCCCCHH------------HHHHHHHH-hcCCCHHHHHH
Confidence 999887 44432211 111111224689999997755432220 00000000 00000 011
Q ss_pred cCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH--HHHH---HHHHhcCC
Q psy16304 308 FRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIW---KQYLGTVS 380 (537)
Q Consensus 308 ~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l~---~~~~~~~~ 380 (537)
+....+..+|+.... ...+.+|||||+||+ +++++++. + |++++|| |+|++.. ..++ ..+.+..+
T Consensus 125 ~~~~~l~~~gl~~~~-~~~~~~LSgG~~qrl----~la~al~~-~--p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g 196 (233)
T PRK11629 125 RALEMLAAVGLEHRA-NHRPSELSGGERQRV----AIARALVN-N--PRLVLADEPTGNLDARNADSIFQLLGELNRLQG 196 (233)
T ss_pred HHHHHHHHcCCchhh-hCChhhCCHHHHHHH----HHHHHHhc-C--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 122334466776543 445889999999999 99999997 5 8999999 9999333 2222 33333234
Q ss_pred EEEEEEeCCCcchhhhhh-hhhhcCCcEEEEe
Q psy16304 381 QTLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLI 411 (537)
Q Consensus 381 ~vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g 411 (537)
.+++++ +|+.+....++ ++++++|+++..+
T Consensus 197 ~tvii~-sH~~~~~~~~~~~~~l~~G~i~~~~ 227 (233)
T PRK11629 197 TAFLVV-THDLQLAKRMSRQLEMRDGRLTAEL 227 (233)
T ss_pred CEEEEE-eCCHHHHHhhCEEEEEECCEEEEEe
Confidence 566666 88888776655 7888999987654
No 50
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.84 E-value=4.9e-22 Score=197.40 Aligned_cols=203 Identities=11% Similarity=0.059 Sum_probs=126.7
Q ss_pred cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304 188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ 267 (537)
Q Consensus 188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q 267 (537)
++++.+.+|++++|+|+||||||||+++|+|. ..|++| +|.++| .++..++. ... ..++..+++++|
T Consensus 20 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl----~~~~~G----~i~~~g-~~~~~~~~---~~~-~~~~~~i~~v~q 86 (243)
T TIGR02315 20 NINLNINPGEFVAIIGPSGAGKSTLLRCINRL----VEPSSG----SILLEG-TDITKLRG---KKL-RKLRRRIGMIFQ 86 (243)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhCC----cCCCcc----EEEECC-EEhhhCCH---HHH-HHHHhheEEEcC
Confidence 45677889999999999999999999999999 899999 899887 44322111 111 123467999999
Q ss_pred CCCCCCCccc--eeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccc
Q psy16304 268 TPLGRPDSRT--CQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN 345 (537)
Q Consensus 268 ~~~l~~~~~~--~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la 345 (537)
++.+++..+. .+.+........ ....+..... ....+....+..+|+.... ...+.+|||||+||+ +++
T Consensus 87 ~~~~~~~~tv~~~l~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~-~~~~~~LSgG~~qrv----~la 157 (243)
T TIGR02315 87 HYNLIERLTVLENVLHGRLGYKPT---WRSLLGRFSE-EDKERALSALERVGLADKA-YQRADQLSGGQQQRV----AIA 157 (243)
T ss_pred CCcccccccHHHHHhhcccccccc---hhhhhccccH-HHHHHHHHHHHHcCcHhhh-cCCcccCCHHHHHHH----HHH
Confidence 9876543222 110000000000 0000000000 0001122234456665433 445789999999999 999
Q ss_pred cceeccCCceEEEEEe--cCchhhHH-----HHHHHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEecccch
Q psy16304 346 RARVEYGNKYEVFLYD--LGGSEDFR-----TIWKQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 346 ~all~~~e~p~lllLD--T~Gl~~~~-----~l~~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~nkdl 416 (537)
++++. + |+++++| |+|++... ..+..+.++.+.+++++ +|+....... + ++++++|+++..+.+.++
T Consensus 158 ~al~~-~--p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~-tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 158 RALAQ-Q--PDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIIN-LHQVDLAKKYADRIVGLKAGEIVFDGAPSEL 233 (243)
T ss_pred HHHhc-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEE-eCCHHHHHHhcCeEEEEECCEEEecCCHHHh
Confidence 99996 5 8999999 99994332 23334433334566666 8888877543 3 889999999877765554
No 51
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=4.5e-22 Score=209.83 Aligned_cols=209 Identities=14% Similarity=0.163 Sum_probs=145.2
Q ss_pred hhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceee
Q psy16304 151 ILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF 230 (537)
Q Consensus 151 ~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~ 230 (537)
.++.++++.+.|++... ..++++.+.+|++++|+||||||||||+++|+|. ..|+.|
T Consensus 18 ~~l~l~~v~~~~~~~~~------------------l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl----~~p~~G- 74 (377)
T PRK11607 18 PLLEIRNLTKSFDGQHA------------------VDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGF----EQPTAG- 74 (377)
T ss_pred ceEEEEeEEEEECCEEE------------------EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC----CCCCce-
Confidence 35677888887653211 2335577889999999999999999999999999 999999
Q ss_pred eeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC---ccc
Q psy16304 231 NRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVD 307 (537)
Q Consensus 231 t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~ 307 (537)
+|.++| ..+. .... .++.++++||++.+++.++. .+++...+.. .... ...
T Consensus 75 ---~I~i~g-~~i~-----~~~~----~~r~ig~vfQ~~~lfp~ltv------------~eNi~~~l~~-~~~~~~~~~~ 128 (377)
T PRK11607 75 ---QIMLDG-VDLS-----HVPP----YQRPINMMFQSYALFPHMTV------------EQNIAFGLKQ-DKLPKAEIAS 128 (377)
T ss_pred ---EEEECC-EECC-----CCCH----HHCCEEEEeCCCccCCCCCH------------HHHHHHHHHH-cCCCHHHHHH
Confidence 999987 4332 1112 23679999999998876554 1111111100 0000 011
Q ss_pred cCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH-----HHHHHHHhcCC
Q psy16304 308 FRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR-----TIWKQYLGTVS 380 (537)
Q Consensus 308 ~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~-----~l~~~~~~~~~ 380 (537)
+....+..+|+.+.. ...+.+|||||+||+ +++++++. + |++++|| +++++... ..+..+.++.+
T Consensus 129 ~v~~~l~~l~L~~~~-~~~~~~LSgGq~QRV----aLARAL~~-~--P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g 200 (377)
T PRK11607 129 RVNEMLGLVHMQEFA-KRKPHQLSGGQRQRV----ALARSLAK-R--PKLLLLDEPMGALDKKLRDRMQLEVVDILERVG 200 (377)
T ss_pred HHHHHHHHcCCchhh-cCChhhCCHHHHHHH----HHHHHHhc-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 223345567776654 455899999999999 99999996 5 8999999 89983322 22234445445
Q ss_pred EEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchh
Q psy16304 381 QTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLS 417 (537)
Q Consensus 381 ~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~ 417 (537)
.+++++ +||..+....+ +++|++|++...+++.++.
T Consensus 201 ~tii~v-THd~~ea~~laDri~vl~~G~i~~~g~~~~~~ 238 (377)
T PRK11607 201 VTCVMV-THDQEEAMTMAGRIAIMNRGKFVQIGEPEEIY 238 (377)
T ss_pred CEEEEE-cCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHH
Confidence 666666 89988765543 8999999999999988764
No 52
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=4.4e-22 Score=195.00 Aligned_cols=190 Identities=17% Similarity=0.116 Sum_probs=125.0
Q ss_pred cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304 188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ 267 (537)
Q Consensus 188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q 267 (537)
++++.+.+|++++|+|+||||||||+++|+|. ..|++| +|.++| ..+.. .. ..++..+++++|
T Consensus 18 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~----~~~~~G----~i~~~g-~~~~~-----~~---~~~~~~i~~~~q 80 (220)
T cd03265 18 GVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTL----LKPTSG----RATVAG-HDVVR-----EP---REVRRRIGIVFQ 80 (220)
T ss_pred ceeEEECCCCEEEEECCCCCCHHHHHHHHhCC----CCCCce----EEEECC-EecCc-----Ch---HHHhhcEEEecC
Confidence 45677889999999999999999999999999 999999 888887 43321 11 122367899999
Q ss_pred CCCCCCCccceeeEEeecCcccccCCcccccc--cCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccc
Q psy16304 268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTS--ATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN 345 (537)
Q Consensus 268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~--~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la 345 (537)
++.+++..+. .+ ++...... ........+....+..+|+.... ...+.+|||||+||+ +++
T Consensus 81 ~~~~~~~~tv-----~~-------~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qr~----~la 143 (220)
T cd03265 81 DLSVDDELTG-----WE-------NLYIHARLYGVPGAERRERIDELLDFVGLLEAA-DRLVKTYSGGMRRRL----EIA 143 (220)
T ss_pred CccccccCcH-----HH-------HHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHh-hCChhhCCHHHHHHH----HHH
Confidence 9775543222 00 00000000 00000011122334466776543 455899999999999 999
Q ss_pred cceeccCCceEEEEEe--cCchhhH--HHH---HHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccc
Q psy16304 346 RARVEYGNKYEVFLYD--LGGSEDF--RTI---WKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKN 415 (537)
Q Consensus 346 ~all~~~e~p~lllLD--T~Gl~~~--~~l---~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkd 415 (537)
++++. + |+++++| |+|++.. ..+ +..+.++.+.+++++ +|+.......+ ++++++|+++..+..++
T Consensus 144 ~al~~-~--p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~-tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (220)
T cd03265 144 RSLVH-R--PEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLT-THYMEEAEQLCDRVAIIDHGRIIAEGTPEE 218 (220)
T ss_pred HHHhc-C--CCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhCCEEEEEeCCEEEEeCChHH
Confidence 99996 5 8999999 9999333 222 233333334566666 89988776543 88999999987665443
No 53
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.84 E-value=4e-22 Score=210.03 Aligned_cols=208 Identities=16% Similarity=0.109 Sum_probs=140.7
Q ss_pred hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304 152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN 231 (537)
Q Consensus 152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t 231 (537)
.+.++++.+.|++... ..++++.+.+|++++|+|+||||||||+++|+|. ..|++|
T Consensus 3 ~l~i~~l~~~~~~~~v------------------l~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl----~~p~~G-- 58 (369)
T PRK11000 3 SVTLRNVTKAYGDVVI------------------SKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGL----EDITSG-- 58 (369)
T ss_pred EEEEEEEEEEeCCeEE------------------EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC----CCCCce--
Confidence 3567778777654222 2345677889999999999999999999999999 999999
Q ss_pred eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC---cccc
Q psy16304 232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDF 308 (537)
Q Consensus 232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~ 308 (537)
+|.++| ..+.. ... .++.++++||++.+++.++.. +++...+.. .... ...+
T Consensus 59 --~I~~~g-~~i~~-----~~~----~~~~i~~v~Q~~~l~~~~tv~------------eni~~~~~~-~~~~~~~~~~~ 113 (369)
T PRK11000 59 --DLFIGE-KRMND-----VPP----AERGVGMVFQSYALYPHLSVA------------ENMSFGLKL-AGAKKEEINQR 113 (369)
T ss_pred --EEEECC-EECCC-----CCH----hHCCEEEEeCCcccCCCCCHH------------HHHHhHHhh-cCCCHHHHHHH
Confidence 999887 43321 111 125699999998877654431 111100000 0000 0112
Q ss_pred CCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCE
Q psy16304 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQ 381 (537)
Q Consensus 309 ~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~ 381 (537)
....+..+|+.+.. ...+.+|||||+||+ +++++++. + |++++|| |++++.. ...++++.++.+.
T Consensus 114 ~~~~l~~lgL~~~~-~~~~~~LSgGq~QRv----aLAraL~~-~--P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~ 185 (369)
T PRK11000 114 VNQVAEVLQLAHLL-DRKPKALSGGQRQRV----AIGRTLVA-E--PSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGR 185 (369)
T ss_pred HHHHHHHcCChhhh-cCChhhCCHHHHHHH----HHHHHHhc-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 23344567776543 455899999999999 99999996 5 8999999 9999333 2233444444345
Q ss_pred EEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchh
Q psy16304 382 TLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLS 417 (537)
Q Consensus 382 vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~ 417 (537)
+++++ +||..+....+ +++|++|+++..+.+.++.
T Consensus 186 tvI~v-THd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~ 222 (369)
T PRK11000 186 TMIYV-THDQVEAMTLADKIVVLDAGRVAQVGKPLELY 222 (369)
T ss_pred EEEEE-eCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 66666 89988776543 8999999999988877763
No 54
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.84 E-value=4e-22 Score=211.35 Aligned_cols=213 Identities=13% Similarity=0.086 Sum_probs=142.1
Q ss_pred hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304 152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN 231 (537)
Q Consensus 152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t 231 (537)
++.++++.+.|+... +..+++|.+.+|++++|+||||||||||+++|+|. +.|++|
T Consensus 3 ~L~~~nls~~y~~~~------------------vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGl----l~p~sG-- 58 (402)
T PRK09536 3 MIDVSDLSVEFGDTT------------------VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGT----LTPTAG-- 58 (402)
T ss_pred eEEEeeEEEEECCEE------------------EEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcC----CCCCCc--
Confidence 456777877765332 23345677889999999999999999999999999 999999
Q ss_pred eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC--ccccC
Q psy16304 232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP--LVDFR 309 (537)
Q Consensus 232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~--~~~~~ 309 (537)
+|.++| ..+.-++ .....+.+++++|++.++..++..-.+.+ .+ ......+..+. .....
T Consensus 59 --~I~l~G-~~i~~~~-------~~~~~~~ig~v~q~~~l~~~~tv~e~v~~----~~----~~~~~~~~~~~~~~~~~v 120 (402)
T PRK09536 59 --TVLVAG-DDVEALS-------ARAASRRVASVPQDTSLSFEFDVRQVVEM----GR----TPHRSRFDTWTETDRAAV 120 (402)
T ss_pred --EEEECC-EEcCcCC-------HHHHhcceEEEccCCCCCCCCCHHHHHHh----cc----chhcccccCCCHHHHHHH
Confidence 999987 4332111 11223679999999875544332100000 00 00000011000 11122
Q ss_pred CccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhh-----HHHHHHHHHhcCCEE
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSED-----FRTIWKQYLGTVSQT 382 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~-----~~~l~~~~~~~~~~v 382 (537)
...+..+|+.+.. .+.+.+|||||+||+ ++++++++ + |++++|| |+|++. +..+++.+.+. +.+
T Consensus 121 ~~~le~vgl~~~~-~~~~~~LSgGerQRv----~IArAL~~-~--P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~-g~T 191 (402)
T PRK09536 121 ERAMERTGVAQFA-DRPVTSLSGGERQRV----LLARALAQ-A--TPVLLLDEPTASLDINHQVRTLELVRRLVDD-GKT 191 (402)
T ss_pred HHHHHHcCCchhh-cCChhhCCHHHHHHH----HHHHHHHc-C--CCEEEEECCcccCCHHHHHHHHHHHHHHHhc-CCE
Confidence 3445567776554 445899999999999 99999997 5 8999999 999933 33344555443 456
Q ss_pred EEEEeCCCcchhhhhh--hhhhcCCcEEEEecccch
Q psy16304 383 LLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 383 IlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl 416 (537)
++++ +|+.......+ ++++++|+++..|.++++
T Consensus 192 IIiv-sHdl~~~~~~adrii~l~~G~iv~~G~~~ev 226 (402)
T PRK09536 192 AVAA-IHDLDLAARYCDELVLLADGRVRAAGPPADV 226 (402)
T ss_pred EEEE-ECCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 6776 89998886544 899999999999888764
No 55
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.83 E-value=3.5e-22 Score=201.88 Aligned_cols=213 Identities=16% Similarity=0.178 Sum_probs=137.7
Q ss_pred hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304 152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN 231 (537)
Q Consensus 152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t 231 (537)
++.++++.+.|+... +-.++++.+.+|++++|+|+||||||||+++|+|. ..|++|
T Consensus 7 ~l~~~~l~~~~~~~~------------------il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~p~~G-- 62 (269)
T PRK11831 7 LVDMRGVSFTRGNRC------------------IFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQ----IAPDHG-- 62 (269)
T ss_pred eEEEeCeEEEECCEE------------------EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCc--
Confidence 466778877664321 12345677889999999999999999999999999 999999
Q ss_pred eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCc---ccc
Q psy16304 232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPL---VDF 308 (537)
Q Consensus 232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~---~~~ 308 (537)
+|.++| ..+..++. ... ...+..+++++|++.+++..+.. + ++...+.....+.. ...
T Consensus 63 --~i~~~g-~~i~~~~~---~~~-~~~~~~i~~v~q~~~~~~~~tv~-----e-------nl~~~~~~~~~~~~~~~~~~ 123 (269)
T PRK11831 63 --EILFDG-ENIPAMSR---SRL-YTVRKRMSMLFQSGALFTDMNVF-----D-------NVAYPLREHTQLPAPLLHST 123 (269)
T ss_pred --eEEECC-EEccccCh---hhH-HHHhhcEEEEecccccCCCCCHH-----H-------HHHHHHHHccCCCHHHHHHH
Confidence 898887 44322211 111 11235689999997765432220 0 00000000000000 011
Q ss_pred CCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH--H---HHHHHHHhcCCE
Q psy16304 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--R---TIWKQYLGTVSQ 381 (537)
Q Consensus 309 ~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~---~l~~~~~~~~~~ 381 (537)
....+..+|+.+.. ...+.+|||||+||+ +++++++. + |++++|| |+|++.. . .++..+.+..+.
T Consensus 124 ~~~~l~~~gl~~~~-~~~~~~LSgGq~qrv----~laral~~-~--p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~ 195 (269)
T PRK11831 124 VMMKLEAVGLRGAA-KLMPSELSGGMARRA----ALARAIAL-E--PDLIMFDEPFVGQDPITMGVLVKLISELNSALGV 195 (269)
T ss_pred HHHHHHHcCChhhh-hCChhhCCHHHHHHH----HHHHHHhc-C--CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCc
Confidence 12234456776543 444899999999999 99999996 5 8999999 9999332 2 233344333345
Q ss_pred EEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccch
Q psy16304 382 TLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 382 vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl 416 (537)
+++++ +|+.......+ ++++++|+++..+.++++
T Consensus 196 tiiiv-sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 231 (269)
T PRK11831 196 TCVVV-SHDVPEVLSIADHAYIVADKKIVAHGSAQAL 231 (269)
T ss_pred EEEEE-ecCHHHHHHhhCEEEEEECCEEEEeCCHHHH
Confidence 66777 89988776543 888999999888776665
No 56
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.83 E-value=8.1e-22 Score=189.51 Aligned_cols=213 Identities=15% Similarity=0.100 Sum_probs=142.3
Q ss_pred hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304 152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN 231 (537)
Q Consensus 152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t 231 (537)
+..++++.-.||......+ +++.+.+|++++|+|+||||||||++.|+|. ..+.+|
T Consensus 3 mL~v~~l~~~YG~~~~L~g------------------vsl~v~~Geiv~llG~NGaGKTTlLkti~Gl----~~~~~G-- 58 (237)
T COG0410 3 MLEVENLSAGYGKIQALRG------------------VSLEVERGEIVALLGRNGAGKTTLLKTIMGL----VRPRSG-- 58 (237)
T ss_pred ceeEEeEeecccceeEEee------------------eeeEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCe--
Confidence 5677888888877655544 4577889999999999999999999999999 999999
Q ss_pred eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCcccc-CC
Q psy16304 232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDF-RS 310 (537)
Q Consensus 232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~-~~ 310 (537)
+|.++| .++.-+.. ....+..+++|||.-..|+.++.. +++.-.......-..... .+
T Consensus 59 --~I~~~G-~dit~~p~------~~r~r~Gi~~VPegR~iF~~LTVe------------ENL~~g~~~~~~~~~~~~~~e 117 (237)
T COG0410 59 --RIIFDG-EDITGLPP------HERARLGIAYVPEGRRIFPRLTVE------------ENLLLGAYARRDKEAQERDLE 117 (237)
T ss_pred --eEEECC-eecCCCCH------HHHHhCCeEeCcccccchhhCcHH------------HHHhhhhhcccccccccccHH
Confidence 999887 55433222 234558899999999988876651 111100000000000000 00
Q ss_pred ccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCch-----hhHHHHHHHHHhcCCEEE
Q psy16304 311 VPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGS-----EDFRTIWKQYLGTVSQTL 383 (537)
Q Consensus 311 ~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl-----~~~~~l~~~~~~~~~~vI 383 (537)
....++-.-.........+|||||+|.+ +++++++. + |++++|| |.|+ +.+...++.+.++...+|
T Consensus 118 ~v~~lFP~Lker~~~~aG~LSGGEQQML----AiaRALm~-~--PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tI 190 (237)
T COG0410 118 EVYELFPRLKERRNQRAGTLSGGEQQML----AIARALMS-R--PKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTI 190 (237)
T ss_pred HHHHHChhHHHHhcCcccCCChHHHHHH----HHHHHHhc-C--CCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEE
Confidence 1111111001112344678999999999 99999996 4 8999999 8888 445555566665555577
Q ss_pred EEEeCCCcchhh-hhh-hhhhcCCcEEEEecccchh
Q psy16304 384 LVSHSLSGRPDD-RCQ-VYLMSCNCQVYLISAKNLS 417 (537)
Q Consensus 384 lVvdshd~~~~~-~~~-i~ll~~G~ii~~g~nkdl~ 417 (537)
+++ -.+...+. -.+ .++|+.|+++..|..+++.
T Consensus 191 lLV-EQn~~~Al~iaDr~yvle~Griv~~G~~~eL~ 225 (237)
T COG0410 191 LLV-EQNARFALEIADRGYVLENGRIVLSGTAAELL 225 (237)
T ss_pred EEE-eccHHHHHHhhCEEEEEeCCEEEEecCHHHHh
Confidence 777 34433333 333 8999999999999988874
No 57
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.83 E-value=4e-22 Score=196.88 Aligned_cols=195 Identities=17% Similarity=0.168 Sum_probs=127.6
Q ss_pred ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304 187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS 266 (537)
Q Consensus 187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~ 266 (537)
.++++.+.+|++++|+|+||||||||+++|+|. +.|+.| +|.++| .++..++. ... ...+..+++++
T Consensus 22 ~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~----~~~~~G----~i~~~g-~~~~~~~~---~~~-~~~~~~i~~~~ 88 (233)
T cd03258 22 KDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGL----ERPTSG----SVLVDG-TDLTLLSG---KEL-RKARRRIGMIF 88 (233)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCc----eEEECC-EEcccCCH---HHH-HHHHhheEEEc
Confidence 345677889999999999999999999999999 999999 999887 44422111 111 11236789999
Q ss_pred cCCCCCCCccceeeEEeecCcccccCCcccccccCcCC---ccccCCccEEEeccCccCccchhhhhcCCCceeeecccc
Q psy16304 267 QTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG 343 (537)
Q Consensus 267 Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~ 343 (537)
|++.+++..+.. +++...... .... ........+..+|+.... ...+.+|||||+||+ +
T Consensus 89 q~~~~~~~~t~~------------e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv----~ 150 (233)
T cd03258 89 QHFNLLSSRTVF------------ENVALPLEI-AGVPKAEIEERVLELLELVGLEDKA-DAYPAQLSGGQKQRV----G 150 (233)
T ss_pred cCcccCCCCcHH------------HHHHHHHHH-cCCCHHHHHHHHHHHHHHCCChhhh-hcChhhCCHHHHHHH----H
Confidence 998765432220 000000000 0000 001122334456766543 445889999999999 9
Q ss_pred cccceeccCCceEEEEEe--cCchhhHH--H---HHHHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEeccc
Q psy16304 344 FNRARVEYGNKYEVFLYD--LGGSEDFR--T---IWKQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLISAK 414 (537)
Q Consensus 344 la~all~~~e~p~lllLD--T~Gl~~~~--~---l~~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~nk 414 (537)
++++++. + |++++|| |+|++... . .+..+.++.+.+++++ +|+.+..... + ++++++|+++..+..+
T Consensus 151 la~al~~-~--p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~-sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 226 (233)
T cd03258 151 IARALAN-N--PKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLI-THEMEVVKRICDRVAVMEKGEVVEEGTVE 226 (233)
T ss_pred HHHHHhc-C--CCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEE-eCCHHHHHHhCCEEEEEECCEEEEecCHH
Confidence 9999996 5 8999999 99994332 2 2233333334566666 8888876543 3 8899999998877655
Q ss_pred ch
Q psy16304 415 NL 416 (537)
Q Consensus 415 dl 416 (537)
++
T Consensus 227 ~~ 228 (233)
T cd03258 227 EV 228 (233)
T ss_pred HH
Confidence 54
No 58
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=3.8e-22 Score=211.42 Aligned_cols=199 Identities=15% Similarity=0.156 Sum_probs=135.0
Q ss_pred ccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhc
Q psy16304 185 LPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGT 264 (537)
Q Consensus 185 ~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~ 264 (537)
...+++|.+.+|++++|+|+||||||||+++|+|. +.|++| +|.++| .++..++. ...+..++..+++
T Consensus 43 ~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl----~~p~sG----~I~i~G-~~i~~~~~---~~l~~~~~~~igy 110 (400)
T PRK10070 43 GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRL----IEPTRG----QVLIDG-VDIAKISD---AELREVRRKKIAM 110 (400)
T ss_pred EEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcC----CCCCCC----EEEECC-EECCcCCH---HHHHHHHhCCEEE
Confidence 45678889999999999999999999999999999 999999 999887 44322211 1222233457999
Q ss_pred cccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCc---cccCCccEEEeccCccCccchhhhhcCCCceeeecc
Q psy16304 265 VSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPL---VDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPT 341 (537)
Q Consensus 265 v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~---~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~t 341 (537)
++|++.+++..+. .+++...+. ...+.. ..+....+..+|+.... ...+.+|||||+||+
T Consensus 111 v~Q~~~l~~~~Tv------------~enl~~~~~-~~~~~~~~~~~~~~e~L~~~gL~~~~-~~~~~~LSgGq~QRv--- 173 (400)
T PRK10070 111 VFQSFALMPHMTV------------LDNTAFGME-LAGINAEERREKALDALRQVGLENYA-HSYPDELSGGMRQRV--- 173 (400)
T ss_pred EECCCcCCCCCCH------------HHHHHHHHH-hcCCCHHHHHHHHHHHHHHcCCChhh-hcCcccCCHHHHHHH---
Confidence 9999887665333 011110000 000100 11222344567776553 555899999999999
Q ss_pred cccccceeccCCceEEEEEe--cCchhhH--HHHH---HHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEec
Q psy16304 342 VGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIW---KQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLIS 412 (537)
Q Consensus 342 i~la~all~~~e~p~lllLD--T~Gl~~~--~~l~---~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~ 412 (537)
+++++++. + |++++|| |++++.. ..++ ..+.++.+.+++++ +|+..+....+ ++++++|+++..+.
T Consensus 174 -~LArAL~~-~--P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIiv-THd~~~~~~~~Dri~vL~~G~i~~~g~ 248 (400)
T PRK10070 174 -GLARALAI-N--PDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFI-SHDLDEAMRIGDRIAIMQNGEVVQVGT 248 (400)
T ss_pred -HHHHHHhc-C--CCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEE-ECCHHHHHHhCCEEEEEECCEEEecCC
Confidence 99999997 5 8999999 9999332 2233 33333334566666 89988776543 89999999988887
Q ss_pred ccchh
Q psy16304 413 AKNLS 417 (537)
Q Consensus 413 nkdl~ 417 (537)
++++.
T Consensus 249 ~~~l~ 253 (400)
T PRK10070 249 PDEIL 253 (400)
T ss_pred HHHHH
Confidence 77663
No 59
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.83 E-value=4.8e-22 Score=204.06 Aligned_cols=190 Identities=18% Similarity=0.153 Sum_probs=132.4
Q ss_pred ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304 187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS 266 (537)
Q Consensus 187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~ 266 (537)
.+++|.+.+|+++||+||||||||||+++|+|. ..|+.| +|.++| .++.. . ....+..+++++
T Consensus 19 ~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl----~~~~~G----~i~i~g-~~~~~-----~---~~~~~~~ig~~~ 81 (301)
T TIGR03522 19 DEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGY----LPPDSG----SVQVCG-EDVLQ-----N---PKEVQRNIGYLP 81 (301)
T ss_pred EEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCC----CCCCce----EEEECC-EEccc-----C---hHHHHhceEEec
Confidence 345677889999999999999999999999999 999999 899887 43321 1 112336799999
Q ss_pred cCCCCCCCccceeeEEeecCcccccCCcccccc---cCcCC---ccccCCccEEEeccCccCccchhhhhcCCCceeeec
Q psy16304 267 QTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTS---ATHLP---LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVP 340 (537)
Q Consensus 267 Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~---~~~l~---~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ 340 (537)
|++.+++.++. .+.+.. ..+.. ...+....+..+|+.... .+.+..||+||+||+
T Consensus 82 q~~~l~~~~tv----------------~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~LS~G~~qrv-- 142 (301)
T TIGR03522 82 EHNPLYLDMYV----------------REYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQ-HKKIGQLSKGYRQRV-- 142 (301)
T ss_pred CCCCCCCCCcH----------------HHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHh-cCchhhCCHHHHHHH--
Confidence 99886655432 111110 00010 011223344567777654 455899999999999
Q ss_pred ccccccceeccCCceEEEEEe--cCchhh--HHHHHHHHHhc-CCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecc
Q psy16304 341 TVGFNRARVEYGNKYEVFLYD--LGGSED--FRTIWKQYLGT-VSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISA 413 (537)
Q Consensus 341 ti~la~all~~~e~p~lllLD--T~Gl~~--~~~l~~~~~~~-~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~n 413 (537)
+++++++. + |++++|| |+|++. ...+|+.+.+- .+.+++++ +|++.+.+..+ ++++++|+++..|+.
T Consensus 143 --~la~al~~-~--p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~-sH~l~~~~~~~d~i~~l~~G~i~~~g~~ 216 (301)
T TIGR03522 143 --GLAQALIH-D--PKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILS-THIMQEVEAICDRVIIINKGKIVADKKL 216 (301)
T ss_pred --HHHHHHhc-C--CCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEE-cCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999996 5 8999999 999933 33344333221 13566666 99999877644 899999999988887
Q ss_pred cchhh
Q psy16304 414 KNLSN 418 (537)
Q Consensus 414 kdl~~ 418 (537)
.++..
T Consensus 217 ~~~~~ 221 (301)
T TIGR03522 217 DELSA 221 (301)
T ss_pred HHHHH
Confidence 77643
No 60
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.83 E-value=5.3e-22 Score=225.91 Aligned_cols=264 Identities=14% Similarity=0.095 Sum_probs=174.6
Q ss_pred hhhhHHHHHhhhcccccccccccccccCccccccccCCCCCC--chhHHHHHHHHHHHHhhhcccccCCCcccCCCCCCC
Q psy16304 93 KAEIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAP--TFEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDD 170 (537)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--p~~~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~~~ 170 (537)
.....|+..+...+.+++....+.+++.++++.+...+++.. |.+. ...+.+++++..|++..
T Consensus 428 ~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~-----------~~~I~~~nVsf~Y~~~~---- 492 (711)
T TIGR00958 428 EQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGTLAPLNL-----------EGLIEFQDVSFSYPNRP---- 492 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC-----------CCeEEEEEEEEECCCCC----
Confidence 456789999999999999999999999999875543221111 1011 22466778877765321
Q ss_pred CCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCC
Q psy16304 171 PAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGG 250 (537)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G 250 (537)
. ..+-+++++.+++|++++|+|+||+|||||+++|.|. ++|++| +|.++| .++..++.
T Consensus 493 -~----------~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl----~~p~~G----~I~idg-~~i~~~~~-- 550 (711)
T TIGR00958 493 -D----------VPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNL----YQPTGG----QVLLDG-VPLVQYDH-- 550 (711)
T ss_pred -C----------CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhc----cCCCCC----EEEECC-EEHHhcCH--
Confidence 0 0123456788899999999999999999999999999 999999 999997 65544433
Q ss_pred CchhhHHHHhhhhccccCCCCCCC-ccceeeEEee-cCcccccCCcccc---cccCcCCccccCCccEEEeccCccCccc
Q psy16304 251 SEDFRTIWKQYLGTVSQTPLGRPD-SRTCQVYLIM-CGVHQVSGIPDEL---TSATHLPLVDFRSVPILVLGLDNAGKSS 325 (537)
Q Consensus 251 ~~~~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~D-s~~~~~~~l~~~l---~~~~~l~~~~~~~~~L~llGl~~~gKs~ 325 (537)
..+++.+++|+|++.++.. ..+++.+..+ .+.++...+.+.. +.+..++.... ..+|..
T Consensus 551 -----~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~Gld-----T~ige~------ 614 (711)
T TIGR00958 551 -----HYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYD-----TEVGEK------ 614 (711)
T ss_pred -----HHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccC-----CcccCC------
Confidence 2334789999999998865 3343333211 1111111110000 01111110000 022221
Q ss_pred hhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHHH-HHHHHHhcCCEEEEEEeCCCcchhhhhh-hhh
Q psy16304 326 IIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRT-IWKQYLGTVSQTLLVSHSLSGRPDDRCQ-VYL 401 (537)
Q Consensus 326 li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~-l~~~~~~~~~~vIlVvdshd~~~~~~~~-i~l 401 (537)
-..|||||+||+ ++||+++. + |++++|| |++++...+ ...+.....+.+++++ +|+......++ +++
T Consensus 615 -G~~LSGGQkQRl----alARALl~-~--p~ILILDEpTSaLD~~te~~i~~~~~~~~~TvIiI-tHrl~~i~~aD~Iiv 685 (711)
T TIGR00958 615 -GSQLSGGQKQRI----AIARALVR-K--PRVLILDEATSALDAECEQLLQESRSRASRTVLLI-AHRLSTVERADQILV 685 (711)
T ss_pred -CCcCCHHHHHHH----HHHHHHhc-C--CCEEEEEccccccCHHHHHHHHHhhccCCCeEEEE-eccHHHHHhCCEEEE
Confidence 235999999999 99999996 5 8999999 999954333 2222222334577777 88888777666 899
Q ss_pred hcCCcEEEEecccchhh
Q psy16304 402 MSCNCQVYLISAKNLSN 418 (537)
Q Consensus 402 l~~G~ii~~g~nkdl~~ 418 (537)
+++|+++..|+++++.+
T Consensus 686 L~~G~ive~Gt~~eL~~ 702 (711)
T TIGR00958 686 LKKGSVVEMGTHKQLME 702 (711)
T ss_pred EECCEEEEeeCHHHHHh
Confidence 99999999999888743
No 61
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.83 E-value=7.1e-22 Score=220.18 Aligned_cols=267 Identities=12% Similarity=0.017 Sum_probs=174.0
Q ss_pred ccchhhhhHHHHHhhhcccccccccccccccCccccccccCCCCCCchhHHHHHHHHHHHHhhhcccccCCCcccCCCCC
Q psy16304 89 YNMYKAEIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAPTFEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLS 168 (537)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~ 168 (537)
+-.+..-..|+..++..+.+++....+++++.++++.+........+.+. ....+.+++++..|++..
T Consensus 288 ~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~----------~~~~i~~~~vsf~y~~~~-- 355 (582)
T PRK11176 288 FSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEGKRVIER----------AKGDIEFRNVTFTYPGKE-- 355 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCcCCCC----------CCCeEEEEEEEEecCCCC--
Confidence 34455678899999999999999999999988877643221100000000 011356677776664321
Q ss_pred CCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeec
Q psy16304 169 DDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDL 248 (537)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~ 248 (537)
. .+-.++++.+++|++++|+|+||+|||||+++|+|. +.|+.| +|.++| .++..++.
T Consensus 356 -~-------------~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl----~~p~~G----~I~i~g-~~i~~~~~ 412 (582)
T PRK11176 356 -V-------------PALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRF----YDIDEG----EILLDG-HDLRDYTL 412 (582)
T ss_pred -C-------------ccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhc----cCCCCc----eEEECC-EEhhhcCH
Confidence 0 122345678889999999999999999999999999 999999 999987 66554443
Q ss_pred CCCchhhHHHHhhhhccccCCCCCCC-ccceeeEEe-e-cCcccccCCcccc---cccCcCCccccCCccEEEeccCccC
Q psy16304 249 GGSEDFRTIWKQYLGTVSQTPLGRPD-SRTCQVYLI-M-CGVHQVSGIPDEL---TSATHLPLVDFRSVPILVLGLDNAG 322 (537)
Q Consensus 249 ~G~~~~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~-D-s~~~~~~~l~~~l---~~~~~l~~~~~~~~~L~llGl~~~g 322 (537)
..+++.+++++|++.++.. ..+++.+.. + .+.++...+.+.. +++..++.... ..+|..+
T Consensus 413 -------~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gld-----t~ig~~g-- 478 (582)
T PRK11176 413 -------ASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLD-----TVIGENG-- 478 (582)
T ss_pred -------HHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccC-----ceeCCCC--
Confidence 2344789999999998865 334443321 1 1111111111100 01111111000 1333222
Q ss_pred ccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH--HHHHHHHhc-CCEEEEEEeCCCcchhhhh
Q psy16304 323 KSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR--TIWKQYLGT-VSQTLLVSHSLSGRPDDRC 397 (537)
Q Consensus 323 Ks~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~--~l~~~~~~~-~~~vIlVvdshd~~~~~~~ 397 (537)
..|||||+||+ ++||+++. + |+++++| |++++... .+.+.+.+. .+.+++++ +|+......+
T Consensus 479 -----~~LSGGqrQRi----~LARall~-~--~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~V-tHr~~~~~~~ 545 (582)
T PRK11176 479 -----VLLSGGQRQRI----AIARALLR-D--SPILILDEATSALDTESERAIQAALDELQKNRTSLVI-AHRLSTIEKA 545 (582)
T ss_pred -----CcCCHHHHHHH----HHHHHHHh-C--CCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEE-ecchHHHHhC
Confidence 34999999999 99999997 5 8999999 99994433 333444443 34567777 7888877776
Q ss_pred h-hhhhcCCcEEEEecccchh
Q psy16304 398 Q-VYLMSCNCQVYLISAKNLS 417 (537)
Q Consensus 398 ~-i~ll~~G~ii~~g~nkdl~ 417 (537)
+ ++++++|+++..|+.+++.
T Consensus 546 D~Ii~l~~g~i~e~g~~~~l~ 566 (582)
T PRK11176 546 DEILVVEDGEIVERGTHAELL 566 (582)
T ss_pred CEEEEEECCEEEEeCCHHHHH
Confidence 6 9999999999999988774
No 62
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.83 E-value=3e-22 Score=208.00 Aligned_cols=229 Identities=15% Similarity=0.137 Sum_probs=146.1
Q ss_pred hhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceee
Q psy16304 151 ILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF 230 (537)
Q Consensus 151 ~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~ 230 (537)
.++.++++.+.|+...-. .+.........+..+++|.+.+|+++||+|+||||||||+++|+|. ..|++|
T Consensus 7 ~~l~v~~l~~~~~~~~~~-----~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl----~~p~~G- 76 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGK-----QWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGL----VKATDG- 76 (331)
T ss_pred ceEEEeCeEEEECCCCcc-----ccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCC----CCCCCc-
Confidence 467889999987532100 0000000012345677888999999999999999999999999999 899999
Q ss_pred eeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCC--CCCCccceeeEEeecCcccccCCcccccccC-cCC---
Q psy16304 231 NRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL--GRPDSRTCQVYLIMCGVHQVSGIPDELTSAT-HLP--- 304 (537)
Q Consensus 231 t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~--l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~-~l~--- 304 (537)
+|.++| .++...+. ...+ .++..++++||++. +++.++. .+++.+.+.... .+.
T Consensus 77 ---~I~~~G-~~i~~~~~---~~~~-~~r~~i~~v~Q~~~~~l~p~~tv------------~~~i~~~l~~~~~~~~~~~ 136 (331)
T PRK15079 77 ---EVAWLG-KDLLGMKD---DEWR-AVRSDIQMIFQDPLASLNPRMTI------------GEIIAEPLRTYHPKLSRQE 136 (331)
T ss_pred ---EEEECC-EECCcCCH---HHHH-HHhCceEEEecCchhhcCCCCCH------------HHHHHHHHHHhccCCCHHH
Confidence 999987 44322211 1222 23357999999973 3333221 111111000000 010
Q ss_pred ccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHh
Q psy16304 305 LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLG 377 (537)
Q Consensus 305 ~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~ 377 (537)
........+..+|+......+.+.+|||||+||+ ++|++++. + |+++++| |++++.. ..++..+.+
T Consensus 137 ~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv----~iArAL~~-~--P~llilDEPts~LD~~~~~~i~~lL~~l~~ 209 (331)
T PRK15079 137 VKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRI----GIARALIL-E--PKLIICDEPVSALDVSIQAQVVNLLQQLQR 209 (331)
T ss_pred HHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHH----HHHHHHhc-C--CCEEEEeCCCccCCHHHHHHHHHHHHHHHH
Confidence 0111223344667743223455899999999999 99999996 5 8999999 9999332 233344444
Q ss_pred cCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchh
Q psy16304 378 TVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLS 417 (537)
Q Consensus 378 ~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~ 417 (537)
+.+.+++++ +||+......+ +++|++|+++..+...++.
T Consensus 210 ~~~~til~i-THdl~~~~~~~dri~vl~~G~ive~g~~~~i~ 250 (331)
T PRK15079 210 EMGLSLIFI-AHDLAVVKHISDRVLVMYLGHAVELGTYDEVY 250 (331)
T ss_pred HcCCEEEEE-eCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 445677777 89998887543 9999999999988877663
No 63
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.83 E-value=6e-22 Score=194.85 Aligned_cols=191 Identities=16% Similarity=0.124 Sum_probs=123.1
Q ss_pred cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccc-----cCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhh
Q psy16304 188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISL-----VPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYL 262 (537)
Q Consensus 188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~-----~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i 262 (537)
++++.+.+|++++|+|+||||||||+++|+|. . .|++| +|.++| ..+...+. . ...++..+
T Consensus 18 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~----~~~~~~~~~~G----~i~~~g-~~~~~~~~----~-~~~~~~~i 83 (227)
T cd03260 18 DISLDIPKGEITALIGPSGCGKSTLLRLLNRL----NDLIPGAPDEG----EVLLDG-KDIYDLDV----D-VLELRRRV 83 (227)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh----cccccCCCCCe----EEEECC-EEhhhcch----H-HHHHHhhE
Confidence 45677889999999999999999999999999 8 89999 898887 44322110 0 12234678
Q ss_pred hccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC---ccccCCccEEEeccCccCccch-hhhhcCCCceee
Q psy16304 263 GTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDFRSVPILVLGLDNAGKSSI-IKRILGEPIISL 338 (537)
Q Consensus 263 ~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~~~~~L~llGl~~~gKs~l-i~~LSgG~rqrv 338 (537)
++++|++.++ ..+. .+ ++........... ...+....+..+|+........ +.+|||||+||+
T Consensus 84 ~~~~q~~~~~-~~tv-----~e-------~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv 150 (227)
T cd03260 84 GMVFQKPNPF-PGSI-----YD-------NVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRL 150 (227)
T ss_pred EEEecCchhc-cccH-----HH-------HHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHH
Confidence 9999997654 2221 11 0000000000000 0111223344566654433333 589999999999
Q ss_pred ecccccccceeccCCceEEEEEe--cCchhhH--HHHHH---HHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEE
Q psy16304 339 VPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIWK---QYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVY 409 (537)
Q Consensus 339 s~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l~~---~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~ 409 (537)
+++++++. + |+++++| |+|++.. ..+++ ++.++ .+++++ +|+....... + ++++++|+++.
T Consensus 151 ----~la~al~~-~--p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~tii~~-sH~~~~~~~~~d~i~~l~~G~i~~ 220 (227)
T cd03260 151 ----CLARALAN-E--PEVLLLDEPTSALDPISTAKIEELIAELKKE--YTIVIV-THNMQQAARVADRTAFLLNGRLVE 220 (227)
T ss_pred ----HHHHHHhc-C--CCEEEEeCCCccCCHHHHHHHHHHHHHHhhC--cEEEEE-eccHHHHHHhCCEEEEEeCCEEEE
Confidence 99999996 5 8999999 9999433 22333 33332 566666 8998876643 3 88999999988
Q ss_pred Eecccc
Q psy16304 410 LISAKN 415 (537)
Q Consensus 410 ~g~nkd 415 (537)
.+.+++
T Consensus 221 ~g~~~~ 226 (227)
T cd03260 221 FGPTEQ 226 (227)
T ss_pred ecCccc
Confidence 776543
No 64
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=4.8e-22 Score=206.16 Aligned_cols=226 Identities=15% Similarity=0.091 Sum_probs=146.1
Q ss_pred hhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceee
Q psy16304 151 ILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF 230 (537)
Q Consensus 151 ~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~ 230 (537)
.++.++++.+.|+...-..... ..+.+..+++|.+.+|+++||+|+||||||||+++|+|. ..|++|
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~~~--------~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl----~~p~~G- 70 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFKPE--------RLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMI----ETPTGG- 70 (327)
T ss_pred ceEEEeeeEEEEcCCCCccccC--------CceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcC----CCCCCc-
Confidence 4678889998875321100000 012345667888999999999999999999999999999 899999
Q ss_pred eeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCC--CCCCccceeeEEeecCcccccCCcccccccCcCC---c
Q psy16304 231 NRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL--GRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---L 305 (537)
Q Consensus 231 t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~--l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~ 305 (537)
+|.++| .++..++. ... ...+..++++||++. +.+.++.. +.+.+.+....... .
T Consensus 71 ---~i~~~g-~~l~~~~~---~~~-~~~r~~i~~v~Q~~~~~l~p~~~v~------------~~l~~~~~~~~~~~~~~~ 130 (327)
T PRK11308 71 ---ELYYQG-QDLLKADP---EAQ-KLLRQKIQIVFQNPYGSLNPRKKVG------------QILEEPLLINTSLSAAER 130 (327)
T ss_pred ---EEEECC-EEcCcCCH---HHH-HHHhCCEEEEEcCchhhcCCccCHH------------HHHHHHHHHccCCCHHHH
Confidence 999987 54432211 111 223357999999974 22221110 00000000000000 0
Q ss_pred cccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhc
Q psy16304 306 VDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGT 378 (537)
Q Consensus 306 ~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~ 378 (537)
..+....+..+|+........+.+|||||+||+ ++|++++. + |+++++| |++++.. ..++..+.++
T Consensus 131 ~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv----~iArAL~~-~--P~lLilDEPts~LD~~~~~~i~~lL~~l~~~ 203 (327)
T PRK11308 131 REKALAMMAKVGLRPEHYDRYPHMFSGGQRQRI----AIARALML-D--PDVVVADEPVSALDVSVQAQVLNLMMDLQQE 203 (327)
T ss_pred HHHHHHHHHHCCCChHHhcCCCccCCHHHHHHH----HHHHHHHc-C--CCEEEEECCCccCCHHHHHHHHHHHHHHHHH
Confidence 112233455677754333556899999999999 99999996 5 8999999 9999432 2233444444
Q ss_pred CCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchh
Q psy16304 379 VSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLS 417 (537)
Q Consensus 379 ~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~ 417 (537)
.+.+++++ +||.......+ +++|+.|+++..|...++.
T Consensus 204 ~g~til~i-THdl~~~~~~adrv~vm~~G~ive~g~~~~~~ 243 (327)
T PRK11308 204 LGLSYVFI-SHDLSVVEHIADEVMVMYLGRCVEKGTKEQIF 243 (327)
T ss_pred cCCEEEEE-eCCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 45677777 89998887543 9999999999998877764
No 65
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.83 E-value=9.3e-22 Score=223.61 Aligned_cols=266 Identities=14% Similarity=0.072 Sum_probs=173.5
Q ss_pred hhhhHHHHHhhhcccccccccccccccCccccccccCCCCCCchhHHHHHHHHHHHHhhhcccccCCCcccCCCCCCCCC
Q psy16304 93 KAEIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAPTFEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDDPA 172 (537)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~~~~~ 172 (537)
.....|+..+...+.+++....+++++.++++.+........+... . . ....+.+++++..|++.. .
T Consensus 412 ~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~---~---~--~~~~I~~~~vsf~Y~~~~---~-- 478 (694)
T TIGR03375 412 GRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEGTRFLHR---P---R--LQGEIEFRNVSFAYPGQE---T-- 478 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCC---C---C--ccceEEEEEEEEEeCCCC---c--
Confidence 3467899999999999999999999999998865432111110000 0 0 012356777777765321 0
Q ss_pred cchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCc
Q psy16304 173 PTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSE 252 (537)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~ 252 (537)
.+-.++++.+++|++++|+|+||||||||+++|+|. +.|++| +|.++| .++..++.
T Consensus 479 -----------~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl----~~p~~G----~I~idg-~~l~~~~~---- 534 (694)
T TIGR03375 479 -----------PALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGL----YQPTEG----SVLLDG-VDIRQIDP---- 534 (694)
T ss_pred -----------cceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcC----CCCCCc----eEEECC-EEhhhCCH----
Confidence 112345678889999999999999999999999999 999999 999997 66654443
Q ss_pred hhhHHHHhhhhccccCCCCCCC-ccceeeEEee-cCcccccCCcccc---cccCcCCccccCCccEEEeccCccCccchh
Q psy16304 253 DFRTIWKQYLGTVSQTPLGRPD-SRTCQVYLIM-CGVHQVSGIPDEL---TSATHLPLVDFRSVPILVLGLDNAGKSSII 327 (537)
Q Consensus 253 ~~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~D-s~~~~~~~l~~~l---~~~~~l~~~~~~~~~L~llGl~~~gKs~li 327 (537)
..+++.+++|+|++.++.. ..+++.+.-. .+.++..+..+.. +.+..++.... ..+|.. -
T Consensus 535 ---~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~-----T~i~e~-------G 599 (694)
T TIGR03375 535 ---ADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLD-----MQIGER-------G 599 (694)
T ss_pred ---HHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCccccc-----ceecCC-------C
Confidence 2344889999999998765 3333322111 1111111110000 01111111000 123322 2
Q ss_pred hhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH--HHHHHHHhc-CCEEEEEEeCCCcchhhhhh-hhh
Q psy16304 328 KRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR--TIWKQYLGT-VSQTLLVSHSLSGRPDDRCQ-VYL 401 (537)
Q Consensus 328 ~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~--~l~~~~~~~-~~~vIlVvdshd~~~~~~~~-i~l 401 (537)
..|||||+||+ ++||+++. + |++++|| |++++... .+.+.+.+. .+.+++++ +|+......++ +++
T Consensus 600 ~~LSgGQrQRl----alARall~-~--p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiI-tHrl~~~~~~D~iiv 671 (694)
T TIGR03375 600 RSLSGGQRQAV----ALARALLR-D--PPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLV-THRTSLLDLVDRIIV 671 (694)
T ss_pred CCCCHHHHHHH----HHHHHHhc-C--CCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEE-ecCHHHHHhCCEEEE
Confidence 34999999999 99999996 4 8999999 99994433 333444332 23566666 78888777666 999
Q ss_pred hcCCcEEEEecccchhh
Q psy16304 402 MSCNCQVYLISAKNLSN 418 (537)
Q Consensus 402 l~~G~ii~~g~nkdl~~ 418 (537)
+++|+++..|+++++.+
T Consensus 672 l~~G~i~e~G~~~eLl~ 688 (694)
T TIGR03375 672 MDNGRIVADGPKDQVLE 688 (694)
T ss_pred EeCCEEEeeCCHHHHHH
Confidence 99999999998888754
No 66
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.83 E-value=9.5e-22 Score=192.56 Aligned_cols=189 Identities=16% Similarity=0.133 Sum_probs=120.7
Q ss_pred ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304 187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS 266 (537)
Q Consensus 187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~ 266 (537)
.++++.+.+|++++|+|+||||||||+++|+|. ..|++| ++.++| .++..++. ...+......+++++
T Consensus 22 ~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~----~~~~~G----~i~~~g-~~~~~~~~---~~~~~~~~~~i~~v~ 89 (221)
T TIGR02211 22 KGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGL----DNPTSG----EVLFNG-QSLSKLSS---NERAKLRNKKLGFIY 89 (221)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC----CCCCCc----EEEECC-EEhhhcCH---hHHHHHHHhcEEEEe
Confidence 345677889999999999999999999999999 999999 898887 44432221 111111225689999
Q ss_pred cCCCCCCCccceeeEEeecCcccccCCccc--ccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccccc
Q psy16304 267 QTPLGRPDSRTCQVYLIMCGVHQVSGIPDE--LTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF 344 (537)
Q Consensus 267 Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~--l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~l 344 (537)
|++.+++..+. .+ ++... +...............+..+|+.... ...+.+|||||+||+ ++
T Consensus 90 q~~~~~~~~tv-----~~-------~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv----~l 152 (221)
T TIGR02211 90 QFHHLLPDFTA-----LE-------NVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRI-NHRPSELSGGERQRV----AI 152 (221)
T ss_pred cccccCCCCcH-----HH-------HHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhh-hCChhhCCHHHHHHH----HH
Confidence 99775543222 00 00000 00000000001112234456765443 455889999999999 99
Q ss_pred ccceeccCCceEEEEEe--cCchhhH--HHH---HHHHHhcCCEEEEEEeCCCcchhhhhh-hhhhcCCcEE
Q psy16304 345 NRARVEYGNKYEVFLYD--LGGSEDF--RTI---WKQYLGTVSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQV 408 (537)
Q Consensus 345 a~all~~~e~p~lllLD--T~Gl~~~--~~l---~~~~~~~~~~vIlVvdshd~~~~~~~~-i~ll~~G~ii 408 (537)
+++++. + |++++|| |+|++.. ..+ +..+.++.+.+++++ +|+......++ ++++++|+++
T Consensus 153 aral~~-~--p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~-tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 153 ARALVN-Q--PSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVV-THDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHhC-C--CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHhhcCEEEEEeCCEec
Confidence 999996 5 8999999 9999332 222 233333334566666 78887766555 7888888763
No 67
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.83 E-value=9.2e-22 Score=195.08 Aligned_cols=205 Identities=15% Similarity=0.067 Sum_probs=126.9
Q ss_pred cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304 188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ 267 (537)
Q Consensus 188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q 267 (537)
++++.+.+|++++|+|+||||||||+++|+|. ..|+.| ++.++| .++..++. .....++..+++++|
T Consensus 19 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~~~~G----~i~~~g-~~~~~~~~----~~~~~~~~~i~~~~q 85 (241)
T cd03256 19 DVSLSINPGEFVALIGPSGAGKSTLLRCLNGL----VEPTSG----SVLIDG-TDINKLKG----KALRQLRRQIGMIFQ 85 (241)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhCC----cCCCCc----eEEECC-EeccccCH----hHHHHHHhccEEEcc
Confidence 45677889999999999999999999999999 899999 898887 44432211 001123467999999
Q ss_pred CCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccc
Q psy16304 268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA 347 (537)
Q Consensus 268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~a 347 (537)
++.+++..+..-.+.+. ................. ....+....+..+|+.... ...+.+|||||+||+ +++++
T Consensus 86 ~~~~~~~~tv~~~l~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv----~la~a 158 (241)
T cd03256 86 QFNLIERLSVLENVLSG-RLGRRSTWRSLFGLFPK-EEKQRALAALERVGLLDKA-YQRADQLSGGQQQRV----AIARA 158 (241)
T ss_pred cCcccccCcHHHHHHhh-hcccchhhhhhcccCcH-HHHHHHHHHHHHcCChhhh-CCCcccCCHHHHHHH----HHHHH
Confidence 98765432220000000 00000000000000000 0001112234456665443 344789999999999 99999
Q ss_pred eeccCCceEEEEEe--cCchhhH--HH---HHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccch
Q psy16304 348 RVEYGNKYEVFLYD--LGGSEDF--RT---IWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 348 ll~~~e~p~lllLD--T~Gl~~~--~~---l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl 416 (537)
++. + |++++|| |+|++.. .. .+..+.++.+.+++++ +|+.......+ ++++++|+++..+..+++
T Consensus 159 l~~-~--p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~-tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (241)
T cd03256 159 LMQ-Q--PKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVS-LHQVDLAREYADRIVGLKDGRIVFDGPPAEL 232 (241)
T ss_pred Hhc-C--CCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhCCEEEEEECCEEEeecCHHHh
Confidence 996 5 8999999 9999332 22 2334333334566777 88888777433 889999999877665554
No 68
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.83 E-value=9.8e-22 Score=192.07 Aligned_cols=186 Identities=15% Similarity=0.151 Sum_probs=118.8
Q ss_pred ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304 187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS 266 (537)
Q Consensus 187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~ 266 (537)
.++++.+.+|++++|+|+||||||||+++|+|. +.|+.| +|.++| ..+..++. .......+..+++++
T Consensus 21 ~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl----~~~~~G----~i~~~g-~~~~~~~~---~~~~~~~~~~i~~~~ 88 (218)
T cd03255 21 KGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGL----DRPTSG----EVRVDG-TDISKLSE---KELAAFRRRHIGFVF 88 (218)
T ss_pred eeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCC----cCCCce----eEEECC-Eehhhcch---hHHHHHHhhcEEEEe
Confidence 345677889999999999999999999999999 999999 898887 44322211 111122335789999
Q ss_pred cCCCCCCCccceeeEEeecCcccccCCcccccccCcCC---ccccCCccEEEeccCccCccchhhhhcCCCceeeecccc
Q psy16304 267 QTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG 343 (537)
Q Consensus 267 Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~ 343 (537)
|++.++...+.. + ++..... ..... ........+..+|+.... ...+.+|||||+||+ +
T Consensus 89 q~~~~~~~~tv~-----e-------~l~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv----~ 150 (218)
T cd03255 89 QSFNLLPDLTAL-----E-------NVELPLL-LAGVPKKERRERAEELLERVGLGDRL-NHYPSELSGGQQQRV----A 150 (218)
T ss_pred eccccCCCCcHH-----H-------HHHHHHh-hcCCCHHHHHHHHHHHHHHcCCchhh-hcChhhcCHHHHHHH----H
Confidence 997755432220 0 0000000 00000 011122334456776543 445889999999999 9
Q ss_pred cccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhhh-hhhhcCCc
Q psy16304 344 FNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ-VYLMSCNC 406 (537)
Q Consensus 344 la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~~-i~ll~~G~ 406 (537)
++++++. + |++++|| |+|++.. ...+..+.++.+.+++++ +|+......++ ++++++|+
T Consensus 151 la~al~~-~--p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~-sH~~~~~~~~d~v~~l~~G~ 217 (218)
T cd03255 151 IARALAN-D--PKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVV-THDPELAEYADRIIELRDGK 217 (218)
T ss_pred HHHHHcc-C--CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEE-ECCHHHHhhhcEEEEeeCCc
Confidence 9999996 5 8999999 9999332 223334433234566666 78877665333 77787776
No 69
>KOG0059|consensus
Probab=99.83 E-value=5.9e-22 Score=229.44 Aligned_cols=291 Identities=16% Similarity=0.143 Sum_probs=190.9
Q ss_pred ccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhc
Q psy16304 185 LPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGT 264 (537)
Q Consensus 185 ~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~ 264 (537)
+.+++++.+++|+++|++|+|||||||++++++|. ..||+| ++.+.| .++...- . .....+.+||
T Consensus 580 Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~----~~~t~G----~a~i~g-~~i~~~~--~----~~~~~~~iGy 644 (885)
T KOG0059|consen 580 AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGE----TKPTSG----EALIKG-HDITVST--D----FQQVRKQLGY 644 (885)
T ss_pred hhcceEEEecCCceEEEecCCCCCchhhHHHHhCC----ccCCcc----eEEEec-Ccccccc--c----hhhhhhhccc
Confidence 56678889999999999999999999999999999 999999 777765 3332210 0 1123478999
Q ss_pred cccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCc---cccCCccEEEeccCccCccchhhhhcCCCceeeecc
Q psy16304 265 VSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPL---VDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPT 341 (537)
Q Consensus 265 v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~---~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~t 341 (537)
+||...+...++. ++ ..+.+..+.++.. ....+..+..+|+...++.. ++.+|||+++|+
T Consensus 645 CPQ~d~l~~~lT~---------rE----hL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~-~~~ySgG~kRkL--- 707 (885)
T KOG0059|consen 645 CPQFDALWEELTG---------RE----HLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQ-VRTYSGGNKRRL--- 707 (885)
T ss_pred CCchhhhhhhccH---------HH----HHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccc-hhhCCCcchhhH---
Confidence 9999775554444 00 1111122222221 12234455578888887655 999999999999
Q ss_pred cccccceeccCCceEEEEEe--cCch--hhHHHHHHHHH---hcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEec
Q psy16304 342 VGFNRARVEYGNKYEVFLYD--LGGS--EDFRTIWKQYL---GTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLIS 412 (537)
Q Consensus 342 i~la~all~~~e~p~lllLD--T~Gl--~~~~~l~~~~~---~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~ 412 (537)
.++.+++. + |++++|| |+|+ ...+.+|.-+. +++. .++.+ +|.+++.+..| +.+|.+|++.++|+
T Consensus 708 -s~aialig-~--p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~-aiiLT-SHsMeE~EaLCtR~aImv~G~l~ciGs 781 (885)
T KOG0059|consen 708 -SFAIALIG-D--PSVILLDEPSTGLDPKARRHLWDIIARLRKNGK-AIILT-SHSMEEAEALCTRTAIMVIGQLRCIGS 781 (885)
T ss_pred -HHHHHHhc-C--CCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCC-EEEEE-cCCHHHHHHHhhhhheeecCeeEEecC
Confidence 99999995 4 8999999 8898 56677885443 3333 67776 89999888776 99999999999999
Q ss_pred ccchhhhhccchhhhhhhhhhHHhhccccccccCCCCCccccccchhhhhccccCcCCCCCceeecCccccCCCceEEEe
Q psy16304 413 AKNLSNGFKKSERDETNISNFQIKNSSENLQDNNTSDNHDSKKKQPRKRKKKVAPLNTDDETELSLPPLRLLGRNVTHTD 492 (537)
Q Consensus 413 nkdl~~~~~~~~~~~~~le~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~k~~~~l~~~~~~~l~fp~~~~~g~~v~~~e 492 (537)
+..+++++.....-...+.............. ..-+....+... .....+.+|.....-...++..
T Consensus 782 ~q~LKsrfG~gy~l~~~~~~~~~~~~v~~~~~----------~~~p~a~~~~~~----~~~~~~~ip~~~~~~~~~vF~~ 847 (885)
T KOG0059|consen 782 PQELKSRYGSGYTLTVRIKELPEVSEVEKLLQ----------NRFPGAVLKERH----AGLLAFEIPKDEVVSLSEVFLA 847 (885)
T ss_pred hHHHHhhcCCcEEEEEEECCCcccchHHHHHH----------HhCCCcchhhhh----hceEEEEcccchhhHHHHHHHH
Confidence 99998888765443322221100000000000 000000000000 0012223321111111246677
Q ss_pred ecccccccccCCCcCC-chHHHHHHHHhhhhhhcCC
Q psy16304 493 SNQEQRCLNLSSDPLG-TGAFNVLHAIATDAARRNP 527 (537)
Q Consensus 493 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 527 (537)
++..+.++|+.+-.++ +|+|+||+++|+..+..+.
T Consensus 848 le~~~~~~~i~dyslsq~tLe~VFi~~a~~q~~~~~ 883 (885)
T KOG0059|consen 848 LEKAKESFGIEDYSLSQTTLEDVFLILAKTQEDDNS 883 (885)
T ss_pred HHHHHHhcCHHHHHHHHhhHHHHHHHHhcccccccc
Confidence 8999999999999999 9999999999999987664
No 70
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.82 E-value=1.2e-21 Score=193.70 Aligned_cols=204 Identities=15% Similarity=0.084 Sum_probs=126.5
Q ss_pred cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304 188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ 267 (537)
Q Consensus 188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q 267 (537)
++++.+.+|++++|+|+||||||||+++|+|. ..|++| +|.++| ..+..++ .....+..+++++|
T Consensus 18 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl----~~~~~G----~i~~~g-~~~~~~~------~~~~~~~~i~~v~q 82 (236)
T cd03219 18 DVSFSVRPGEIHGLIGPNGAGKTTLFNLISGF----LRPTSG----SVLFDG-EDITGLP------PHEIARLGIGRTFQ 82 (236)
T ss_pred CceEEecCCcEEEEECCCCCCHHHHHHHHcCC----CCCCCc----eEEECC-EECCCCC------HHHHHhcCEEEEec
Confidence 45677889999999999999999999999999 899999 898887 4332111 11122356899999
Q ss_pred CCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccc
Q psy16304 268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA 347 (537)
Q Consensus 268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~a 347 (537)
++.+++..+..-.+.+.........+...................+..+|+.... ...+.+|||||+||+ +++++
T Consensus 83 ~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgG~~qrv----~la~a 157 (236)
T cd03219 83 IPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLA-DRPAGELSYGQQRRL----EIARA 157 (236)
T ss_pred ccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchh-hCChhhCCHHHHHHH----HHHHH
Confidence 9876554322000000000000000000000000000011122334466776543 445899999999999 99999
Q ss_pred eeccCCceEEEEEe--cCchhhH--HHHH---HHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEecccch
Q psy16304 348 RVEYGNKYEVFLYD--LGGSEDF--RTIW---KQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 348 ll~~~e~p~lllLD--T~Gl~~~--~~l~---~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~nkdl 416 (537)
++. + |+++++| |+|++.. ..++ .++.+ .+.+++++ +|+....... + ++++++|+++..+...++
T Consensus 158 l~~-~--p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~v-sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (236)
T cd03219 158 LAT-D--PKLLLLDEPAAGLNPEETEELAELIRELRE-RGITVLLV-EHDMDVVMSLADRVTVLDQGRVIAEGTPDEV 230 (236)
T ss_pred Hhc-C--CCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEE-ecCHHHHHHhCCEEEEEeCCEEEeecCHHHh
Confidence 996 5 8999999 9999433 2222 33333 34566666 8998887653 3 889999999877665554
No 71
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.82 E-value=1.2e-21 Score=218.00 Aligned_cols=262 Identities=14% Similarity=0.104 Sum_probs=168.3
Q ss_pred hHHHHHhhhcccccccccccccccCccccccccCCCCCCchhHHHHHHHHHHHHhhhcccccCCCcccCCCCCCCCCcch
Q psy16304 96 IWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAPTFEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDDPAPTF 175 (537)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~~~~~~~~ 175 (537)
..|+..+...+..++.+..+++++.++++.+....++..+... -....+.+++++..|++.. .
T Consensus 291 ~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~~~~~~~~---------~~~~~i~~~~v~f~y~~~~---~----- 353 (574)
T PRK11160 291 FEALMPVAGAFQHLGQVIASARRINEITEQKPEVTFPTTSTAA---------ADQVSLTLNNVSFTYPDQP---Q----- 353 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcccCCC---------CCCCeEEEEEEEEECCCCC---C-----
Confidence 3577778888899999999999999998865543322111000 0022466778877764321 0
Q ss_pred hhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhh
Q psy16304 176 ENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFR 255 (537)
Q Consensus 176 ~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r 255 (537)
..-.++++.+++|++++|+|+||||||||+++|+|. ++|++| +|.++| .++..++.
T Consensus 354 --------~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~----~~p~~G----~I~i~g-~~i~~~~~------- 409 (574)
T PRK11160 354 --------PVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRA----WDPQQG----EILLNG-QPIADYSE------- 409 (574)
T ss_pred --------cceecceEEECCCCEEEEECCCCCCHHHHHHHHhcC----CCCCCc----eEEECC-EEhhhCCH-------
Confidence 012345677889999999999999999999999999 999999 999987 66554443
Q ss_pred HHHHhhhhccccCCCCCCC-ccceeeEEee-cCcccccCCcccccccCcCCcc-ccCCccEEEeccCccCccchhhhhcC
Q psy16304 256 TIWKQYLGTVSQTPLGRPD-SRTCQVYLIM-CGVHQVSGIPDELTSATHLPLV-DFRSVPILVLGLDNAGKSSIIKRILG 332 (537)
Q Consensus 256 ~~~~~~i~~v~Q~~~l~~~-~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~-~~~~~~L~llGl~~~gKs~li~~LSg 332 (537)
..+++.+++++|++.++.. ..+++.+... .+.++. .+.++..+ +... ...+-.=..+|.. ...|||
T Consensus 410 ~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i---~~al~~~~-l~~~i~~p~GldT~vge~-------g~~LSg 478 (574)
T PRK11160 410 AALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEAL---IEVLQQVG-LEKLLEDDKGLNAWLGEG-------GRQLSG 478 (574)
T ss_pred HHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHH---HHHHHHcC-CHHHHcCccccCchhcCC-------CCCCCH
Confidence 3344789999999988765 2333322111 111111 11111100 0000 0000000022221 345999
Q ss_pred CCceeeecccccccceeccCCceEEEEEe--cCchhhHH--HHHHHHHhc-CCEEEEEEeCCCcchhhhhh-hhhhcCCc
Q psy16304 333 EPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR--TIWKQYLGT-VSQTLLVSHSLSGRPDDRCQ-VYLMSCNC 406 (537)
Q Consensus 333 G~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~--~l~~~~~~~-~~~vIlVvdshd~~~~~~~~-i~ll~~G~ 406 (537)
||+||+ ++||+++. + |+++++| |++++... .+.+.+.+. .+.+++++ +|+......++ ++++++|+
T Consensus 479 GqrqRi----alARall~-~--~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviii-tHr~~~~~~~d~i~~l~~G~ 550 (574)
T PRK11160 479 GEQRRL----GIARALLH-D--APLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMI-THRLTGLEQFDRICVMDNGQ 550 (574)
T ss_pred HHHHHH----HHHHHHhc-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEE-ecChhHHHhCCEEEEEeCCe
Confidence 999999 99999996 5 8999999 99994333 233444332 23466666 78877777666 89999999
Q ss_pred EEEEecccchh
Q psy16304 407 QVYLISAKNLS 417 (537)
Q Consensus 407 ii~~g~nkdl~ 417 (537)
++..|+..++.
T Consensus 551 i~~~g~~~~l~ 561 (574)
T PRK11160 551 IIEQGTHQELL 561 (574)
T ss_pred EEEeCCHHHHH
Confidence 99999887774
No 72
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.82 E-value=1.5e-21 Score=196.05 Aligned_cols=199 Identities=15% Similarity=0.140 Sum_probs=132.7
Q ss_pred hhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceee
Q psy16304 151 ILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF 230 (537)
Q Consensus 151 ~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~ 230 (537)
..+.++++.+.|++..+. .++++.+.+|++++|+|+||||||||+++|+|. ..|+.|
T Consensus 11 ~~l~i~~l~~~~~~~~il------------------~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl----~~p~~G- 67 (257)
T PRK11247 11 TPLLLNAVSKRYGERTVL------------------NQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGL----ETPSAG- 67 (257)
T ss_pred CcEEEEEEEEEECCccee------------------eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC----CCCCCe-
Confidence 456778888877543222 234577889999999999999999999999999 999999
Q ss_pred eeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccc-cCcCCccccC
Q psy16304 231 NRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTS-ATHLPLVDFR 309 (537)
Q Consensus 231 t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~-~~~l~~~~~~ 309 (537)
+|.++| ..+ .. ++..+++++|++.+++..+. .+.+.. ... ....+.
T Consensus 68 ---~i~~~g-~~~--------~~----~~~~i~~v~q~~~l~~~~tv----------------~enl~~~~~~-~~~~~~ 114 (257)
T PRK11247 68 ---ELLAGT-APL--------AE----AREDTRLMFQDARLLPWKKV----------------IDNVGLGLKG-QWRDAA 114 (257)
T ss_pred ---EEEECC-EEH--------HH----hhCceEEEecCccCCCCCcH----------------HHHHHhcccc-hHHHHH
Confidence 888765 321 11 23568999999775543222 010000 000 000112
Q ss_pred CccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH-----HHHHHHHhcCCEE
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR-----TIWKQYLGTVSQT 382 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~-----~l~~~~~~~~~~v 382 (537)
...+..+|+.... ...+.+|||||+||+ +++++++. + |+++++| |+|++... ..+..+.++.+.+
T Consensus 115 ~~~l~~~gl~~~~-~~~~~~LSgGqkqrl----~laraL~~-~--p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~t 186 (257)
T PRK11247 115 LQALAAVGLADRA-NEWPAALSGGQKQRV----ALARALIH-R--PGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFT 186 (257)
T ss_pred HHHHHHcCChhHh-cCChhhCCHHHHHHH----HHHHHHhc-C--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCE
Confidence 2233456665443 344889999999999 99999996 5 8999999 99994332 2233443333556
Q ss_pred EEEEeCCCcchhhhhh--hhhhcCCcEEEEeccc
Q psy16304 383 LLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAK 414 (537)
Q Consensus 383 IlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nk 414 (537)
++++ +|+.......+ ++++++|+++..+..+
T Consensus 187 viiv-sHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 187 VLLV-THDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred EEEE-eCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 7777 89988765433 8899999988766543
No 73
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.82 E-value=1.7e-21 Score=192.84 Aligned_cols=191 Identities=15% Similarity=0.092 Sum_probs=124.7
Q ss_pred cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304 188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ 267 (537)
Q Consensus 188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q 267 (537)
.+++.+.+|++++|+|+||||||||+++|+|. ..|++| +|.++| ..+...+ .. . ...+++++|
T Consensus 19 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~----~~p~~G----~i~~~g-~~i~~~~----~~---~-~~~i~~~~q 81 (236)
T TIGR03864 19 DVSFTVRPGEFVALLGPNGAGKSTLFSLLTRL----YVAQEG----QISVAG-HDLRRAP----RA---A-LARLGVVFQ 81 (236)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC----cCCCce----EEEECC-EEcccCC----hh---h-hhhEEEeCC
Confidence 45677889999999999999999999999999 999999 899887 4442111 11 1 146899999
Q ss_pred CCCCCCCccceeeEEeecCcccccCCcccccccCcCC---ccccCCccEEEeccCccCccchhhhhcCCCceeeeccccc
Q psy16304 268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF 344 (537)
Q Consensus 268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~l 344 (537)
++.++...+. .+ ++.... ...... ........+..+|+.... ...+.+|||||+||+ ++
T Consensus 82 ~~~~~~~~t~-----~~-------~l~~~~-~~~~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~LS~G~~qrl----~l 143 (236)
T TIGR03864 82 QPTLDLDLSV-----RQ-------NLRYHA-ALHGLSRAEARERIAALLARLGLAERA-DDKVRELNGGHRRRV----EI 143 (236)
T ss_pred CCCCcccCcH-----HH-------HHHHHH-HhcCCCHHHHHHHHHHHHHHcCChhhh-cCChhhCCHHHHHHH----HH
Confidence 8775443222 00 000000 000000 001112233355665443 344889999999999 99
Q ss_pred ccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhhh-hhhhcCCcEEEEecccch
Q psy16304 345 NRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 345 a~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g~nkdl 416 (537)
+++++. + |+++++| |+|++.. ...+..+.++.+.+++++ +|+......++ ++++++|+++..+..+++
T Consensus 144 aral~~-~--p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~-sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (236)
T TIGR03864 144 ARALLH-R--PALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWA-THLVDEIEADDRLVVLHRGRVLADGAAAEL 219 (236)
T ss_pred HHHHhc-C--CCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEE-ecChhhHhhCCEEEEEeCCeEEEeCCHHHH
Confidence 999996 5 8999999 9999332 223334433224566666 78887776544 889999999887766655
Q ss_pred h
Q psy16304 417 S 417 (537)
Q Consensus 417 ~ 417 (537)
.
T Consensus 220 ~ 220 (236)
T TIGR03864 220 R 220 (236)
T ss_pred H
Confidence 3
No 74
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=1.1e-21 Score=191.18 Aligned_cols=185 Identities=16% Similarity=0.118 Sum_probs=120.1
Q ss_pred ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304 187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS 266 (537)
Q Consensus 187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~ 266 (537)
.++++.+.+|++++|+|+||||||||+++|+|. ..|++| +|.++| .++... .. ++..+++++
T Consensus 17 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~----~~p~~G----~i~~~g-~~~~~~-----~~----~~~~i~~v~ 78 (213)
T cd03259 17 DDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGL----ERPDSG----EILIDG-RDVTGV-----PP----ERRNIGMVF 78 (213)
T ss_pred cceeEEEcCCcEEEEECCCCCCHHHHHHHHhCC----CCCCCe----EEEECC-EEcCcC-----ch----hhccEEEEc
Confidence 345677889999999999999999999999999 999999 898887 433211 11 125689999
Q ss_pred cCCCCCCCccceeeEEeecCcccccCCcccccc--cCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccccc
Q psy16304 267 QTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTS--ATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF 344 (537)
Q Consensus 267 Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~--~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~l 344 (537)
|++.++...+. .+ ++...... ........+....+..+|+.... ...+.+|||||+||+ ++
T Consensus 79 q~~~~~~~~tv-----~~-------~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgG~~qrl----~l 141 (213)
T cd03259 79 QDYALFPHLTV-----AE-------NIAFGLKLRGVPKAEIRARVRELLELVGLEGLL-NRYPHELSGGQQQRV----AL 141 (213)
T ss_pred CchhhccCCcH-----HH-------HHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhh-hcChhhCCHHHHHHH----HH
Confidence 98775543222 00 00000000 00000001112234456766543 445889999999999 99
Q ss_pred ccceeccCCceEEEEEe--cCchhhHH--HHH---HHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEE
Q psy16304 345 NRARVEYGNKYEVFLYD--LGGSEDFR--TIW---KQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYL 410 (537)
Q Consensus 345 a~all~~~e~p~lllLD--T~Gl~~~~--~l~---~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~ 410 (537)
+++++. + |+++++| |+|++... .++ .++.++.+.+++++ +|+.......+ ++++++|+++..
T Consensus 142 a~al~~-~--p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~-sH~~~~~~~~~d~v~~l~~G~i~~~ 212 (213)
T cd03259 142 ARALAR-E--PSLLLLDEPLSALDAKLREELREELKELQRELGITTIYV-THDQEEALALADRIAVMNEGRIVQV 212 (213)
T ss_pred HHHHhc-C--CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEE-ecCHHHHHHhcCEEEEEECCEEEec
Confidence 999996 5 8999999 99994332 222 33333234566666 88888765533 888899987653
No 75
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=1.5e-21 Score=197.26 Aligned_cols=196 Identities=15% Similarity=0.203 Sum_probs=128.3
Q ss_pred ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304 187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS 266 (537)
Q Consensus 187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~ 266 (537)
.++++.+.+|++++|+|+||||||||+++|+|. ..|+.| ++.++| ..+..++. ...+......+++++
T Consensus 41 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl----~~p~~G----~i~i~g-~~~~~~~~---~~~~~~~~~~i~~v~ 108 (269)
T cd03294 41 NDVSLDVREGEIFVIMGLSGSGKSTLLRCINRL----IEPTSG----KVLIDG-QDIAAMSR---KELRELRRKKISMVF 108 (269)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC----CCCCCe----EEEECC-EEccccCh---hhhhhhhcCcEEEEe
Confidence 456678889999999999999999999999999 999999 899887 44422211 111112235689999
Q ss_pred cCCCCCCCccceeeEEeecCcccccCCcccccccCcCC---ccccCCccEEEeccCccCccchhhhhcCCCceeeecccc
Q psy16304 267 QTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG 343 (537)
Q Consensus 267 Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~ 343 (537)
|++.++...+. .+++...+. ..... ...+....+..+|+.... ...+.+|||||+||+ +
T Consensus 109 q~~~~~~~~tv------------~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~Gq~qrv----~ 170 (269)
T cd03294 109 QSFALLPHRTV------------LENVAFGLE-VQGVPRAEREERAAEALELVGLEGWE-HKYPDELSGGMQQRV----G 170 (269)
T ss_pred cCcccCCCCcH------------HHHHHHHHH-hcCCCHHHHHHHHHHHHHHcCCHhHh-hCCcccCCHHHHHHH----H
Confidence 99775543222 000000000 00000 001122234456766443 445889999999999 9
Q ss_pred cccceeccCCceEEEEEe--cCchhhHH-----HHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEeccc
Q psy16304 344 FNRARVEYGNKYEVFLYD--LGGSEDFR-----TIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAK 414 (537)
Q Consensus 344 la~all~~~e~p~lllLD--T~Gl~~~~-----~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nk 414 (537)
++++++. + |++++|| |+|++... ..+..+.+..+.+++++ +|+.......+ ++++++|+++..+...
T Consensus 171 lAral~~-~--p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~-tH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 246 (269)
T cd03294 171 LARALAV-D--PDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFI-THDLDEALRLGDRIAIMKDGRLVQVGTPE 246 (269)
T ss_pred HHHHHhc-C--CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 9999996 5 8999999 99994332 22334433334566666 88888765433 8889999998887766
Q ss_pred ch
Q psy16304 415 NL 416 (537)
Q Consensus 415 dl 416 (537)
++
T Consensus 247 ~~ 248 (269)
T cd03294 247 EI 248 (269)
T ss_pred HH
Confidence 65
No 76
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.82 E-value=9e-22 Score=197.54 Aligned_cols=220 Identities=15% Similarity=0.155 Sum_probs=136.8
Q ss_pred hhhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304 150 GILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG 229 (537)
Q Consensus 150 ~~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G 229 (537)
..++.++++.+.|+...+ ..++++.+.+|++++|+|+||||||||+++|+|. +.|+.|
T Consensus 4 ~~~l~~~~l~~~~~~~~i------------------l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~p~~G 61 (258)
T PRK11701 4 QPLLSVRGLTKLYGPRKG------------------CRDVSFDLYPGEVLGIVGESGSGKTTLLNALSAR----LAPDAG 61 (258)
T ss_pred CceEEEeeeEEEcCCcee------------------eeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCC
Confidence 456778888887654222 2234577889999999999999999999999999 999999
Q ss_pred eeeEEEEECCcEEEEEeecCCC--chhhHHHHhhhhccccCCC--CCCCccceeeEEeecCcccccCCcccccccC--cC
Q psy16304 230 FNRARVEYGNKYEVFLYDLGGS--EDFRTIWKQYLGTVSQTPL--GRPDSRTCQVYLIMCGVHQVSGIPDELTSAT--HL 303 (537)
Q Consensus 230 ~t~~~i~i~g~~~i~~~D~~G~--~~~r~~~~~~i~~v~Q~~~--l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~--~l 303 (537)
+|.++| ......+.... ...+..++..+++++|++. ++...+. . +++...+.... ..
T Consensus 62 ----~i~~~g-~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~-----~-------~~i~~~~~~~~~~~~ 124 (258)
T PRK11701 62 ----EVHYRM-RDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSA-----G-------GNIGERLMAVGARHY 124 (258)
T ss_pred ----EEEECC-ccccccccccCCHHHHHHHhhcceEEEeeCcccccCccccH-----H-------HHHHHHHHHhccCcH
Confidence 898887 33000001111 1111223456899999864 1111111 0 00000000000 00
Q ss_pred -CccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH--HHH---HHH
Q psy16304 304 -PLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR--TIW---KQY 375 (537)
Q Consensus 304 -~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~--~l~---~~~ 375 (537)
.........+..+|+........+.+|||||+||+ +++++++. + |+++++| |+|++... .++ ..+
T Consensus 125 ~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl----~laral~~-~--p~llllDEPt~~LD~~~~~~l~~~l~~~ 197 (258)
T PRK11701 125 GDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRL----QIARNLVT-H--PRLVFMDEPTGGLDVSVQARLLDLLRGL 197 (258)
T ss_pred HHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHH----HHHHHHhc-C--CCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 00011122334556642122345889999999999 99999996 5 8999999 99994332 222 333
Q ss_pred HhcCCEEEEEEeCCCcchhhh-hh-hhhhcCCcEEEEecccch
Q psy16304 376 LGTVSQTLLVSHSLSGRPDDR-CQ-VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 376 ~~~~~~vIlVvdshd~~~~~~-~~-i~ll~~G~ii~~g~nkdl 416 (537)
.+..+.+++++ +|+...... ++ ++++++|+++..+.+.++
T Consensus 198 ~~~~~~tii~i-sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 239 (258)
T PRK11701 198 VRELGLAVVIV-THDLAVARLLAHRLLVMKQGRVVESGLTDQV 239 (258)
T ss_pred HHhcCcEEEEE-eCCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 33335667777 899988875 33 899999999888777665
No 77
>KOG0057|consensus
Probab=99.82 E-value=8.1e-22 Score=208.31 Aligned_cols=270 Identities=14% Similarity=0.084 Sum_probs=172.5
Q ss_pred eeeeccchhhhh-HHHHHhhhcccccccccccccccCccccccccCCCCCCchhHHHHHHHHHHHHhhhcccccCCCccc
Q psy16304 85 DVVLYNMYKAEI-WAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAPTFEVCIVSLLVHLMRGILMGIQNVPNFQT 163 (537)
Q Consensus 85 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~m~~~li~~~~l~k~~~ 163 (537)
|-|.||.+.-.+ .|+--|+..+..+.++...+..++.....+..+.+.++|.+. .+..+.++++...|+
T Consensus 293 dlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~~~~~i~~----------~~~~I~F~dV~f~y~ 362 (591)
T KOG0057|consen 293 DLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQEAALPIEL----------FGGSIEFDDVHFSYG 362 (591)
T ss_pred chhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhhccCCccc----------CCCcEEEEeeEEEeC
Confidence 455666665443 466667777766666666666655555555555554334333 233466677777665
Q ss_pred CCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEE
Q psy16304 164 SSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEV 243 (537)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i 243 (537)
... .+...+++++.+|+++||+|+|||||||++|+|.+. .+ .+| +|.++| .++
T Consensus 363 ~k~-----------------~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF----~d-~sG----~I~IdG-~di 415 (591)
T KOG0057|consen 363 PKR-----------------KVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRF----FD-YSG----SILIDG-QDI 415 (591)
T ss_pred CCC-----------------ceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHH----hc-cCC----cEEECC-eeH
Confidence 333 122345678889999999999999999999999999 88 999 999998 655
Q ss_pred EEeecCCCchhhHHHHhhhhccccCCCCCCC-ccceeeEEee-cCcccccCCcccc---cccCcCCccccCCccEEEecc
Q psy16304 244 FLYDLGGSEDFRTIWKQYLGTVSQTPLGRPD-SRTCQVYLIM-CGVHQVSGIPDEL---TSATHLPLVDFRSVPILVLGL 318 (537)
Q Consensus 244 ~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~D-s~~~~~~~l~~~l---~~~~~l~~~~~~~~~L~llGl 318 (537)
.-++. ...++.+|+|||+..+|.+ ...++.+.-- .+.++..+..+.. +.+..++.... ..+|.
T Consensus 416 k~~~~-------~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~-----T~VGe 483 (591)
T KOG0057|consen 416 KEVSL-------ESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQ-----TLVGE 483 (591)
T ss_pred hhhCh-------HHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccch-----hhHhh
Confidence 44443 3445889999999998854 2222211111 1111111111100 01111111110 12443
Q ss_pred CccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCch--hhHHHHHHHHHh-cCCEEEEEEeCCCcch
Q psy16304 319 DNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGS--EDFRTIWKQYLG-TVSQTLLVSHSLSGRP 393 (537)
Q Consensus 319 ~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl--~~~~~l~~~~~~-~~~~vIlVvdshd~~~ 393 (537)
.+ ..|||||+||+ +++|+++. + ++++++| |+.+ +..+++.+.+.+ ..+.+++.+ .|+...
T Consensus 484 rG-------~~LSGGekQrv----slaRa~lK-d--a~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~I-vH~l~l 548 (591)
T KOG0057|consen 484 RG-------LMLSGGEKQRV----SLARAFLK-D--APILLLDEATSALDSETEREILDMIMDVMSGRTVIMI-VHRLDL 548 (591)
T ss_pred cc-------cccccchHHHH----HHHHHHhc-C--CCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEE-Eecchh
Confidence 32 34999999999 99999995 4 8999999 9999 444556676666 333344444 466667
Q ss_pred hhhhh-hhhhcCCcEEEEecccchhh
Q psy16304 394 DDRCQ-VYLMSCNCQVYLISAKNLSN 418 (537)
Q Consensus 394 ~~~~~-i~ll~~G~ii~~g~nkdl~~ 418 (537)
...++ +.++++|++..+|+..++..
T Consensus 549 l~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 549 LKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred HhcCCEEEEEECCeeEEeccHHHHhh
Confidence 77766 99999999999999998843
No 78
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.82 E-value=1.5e-21 Score=218.16 Aligned_cols=260 Identities=14% Similarity=0.060 Sum_probs=169.2
Q ss_pred hhhHHHHHhhhcccccccccccccccCccccccccCCCCCCchhHHHHHHHHHHHHhhhcccccCCCcccCCCCCCCCCc
Q psy16304 94 AEIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAPTFEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDDPAP 173 (537)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~~~~~~ 173 (537)
....|+..++..+..++....+.+++.++++.+....... ... ....-+.++++...|+...
T Consensus 293 ~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~-~~~----------~~~~~i~~~~v~f~y~~~~------- 354 (592)
T PRK10790 293 RLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYGND-DRP----------LQSGRIDIDNVSFAYRDDN------- 354 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCCC-ccC----------CCCCeEEEEEEEEEeCCCC-------
Confidence 5678999999999999999999999988877432110000 000 0011245666666554211
Q ss_pred chhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCch
Q psy16304 174 TFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSED 253 (537)
Q Consensus 174 ~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~ 253 (537)
.+-.++++.+++|++++|+|++|+|||||+++|+|. +.|+.| +|.++| .++..++.
T Consensus 355 ----------~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl----~~p~~G----~I~idg-~~i~~~~~----- 410 (592)
T PRK10790 355 ----------LVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGY----YPLTEG----EIRLDG-RPLSSLSH----- 410 (592)
T ss_pred ----------ceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcc----cCCCCc----eEEECC-EEhhhCCH-----
Confidence 012355678889999999999999999999999999 999999 999997 66655443
Q ss_pred hhHHHHhhhhccccCCCCCCC-ccceeeEEeecCcccccCCcccc---cccCcCCccccCCccEEEeccCccCccchhhh
Q psy16304 254 FRTIWKQYLGTVSQTPLGRPD-SRTCQVYLIMCGVHQVSGIPDEL---TSATHLPLVDFRSVPILVLGLDNAGKSSIIKR 329 (537)
Q Consensus 254 ~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~Ds~~~~~~~l~~~l---~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~ 329 (537)
..+++.+++++|++.++.. ..+++.+.-+.+.++..++.+.. +.+..++.... ..+|.. -..
T Consensus 411 --~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gld-----t~i~e~-------g~~ 476 (592)
T PRK10790 411 --SVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLY-----TPLGEQ-------GNN 476 (592)
T ss_pred --HHHHhheEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhcccccc-----ccccCC-------CCC
Confidence 3445889999999998866 33333222111111111111100 01111110000 012221 235
Q ss_pred hcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH--HHHHHHHhc-CCEEEEEEeCCCcchhhhhh-hhhhc
Q psy16304 330 ILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR--TIWKQYLGT-VSQTLLVSHSLSGRPDDRCQ-VYLMS 403 (537)
Q Consensus 330 LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~--~l~~~~~~~-~~~vIlVvdshd~~~~~~~~-i~ll~ 403 (537)
|||||+||+ ++||+++. + |+++++| |++++... .+.+.+.+. .+.+++++ +|+......++ +++++
T Consensus 477 LSGGqrQRi----alARaLl~-~--~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIiv-tHr~~~l~~~D~ii~l~ 548 (592)
T PRK10790 477 LSVGQKQLL----ALARVLVQ-T--PQILILDEATANIDSGTEQAIQQALAAVREHTTLVVI-AHRLSTIVEADTILVLH 548 (592)
T ss_pred CCHHHHHHH----HHHHHHHh-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEE-ecchHHHHhCCEEEEEE
Confidence 999999999 99999996 5 8999999 99994333 222333322 23566666 78887777666 89999
Q ss_pred CCcEEEEecccchh
Q psy16304 404 CNCQVYLISAKNLS 417 (537)
Q Consensus 404 ~G~ii~~g~nkdl~ 417 (537)
+|+++..|+.+++.
T Consensus 549 ~G~i~~~G~~~~L~ 562 (592)
T PRK10790 549 RGQAVEQGTHQQLL 562 (592)
T ss_pred CCEEEEEcCHHHHH
Confidence 99999999988874
No 79
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.82 E-value=9.4e-22 Score=238.65 Aligned_cols=196 Identities=17% Similarity=0.146 Sum_probs=140.4
Q ss_pred ccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhc
Q psy16304 185 LPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGT 264 (537)
Q Consensus 185 ~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~ 264 (537)
+..++++.+.+|+++||+|+||||||||+++|+|. ..|++| +|.++| .++.. . ....++.+|+
T Consensus 1954 aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gl----l~ptsG----~I~i~G-~~i~~-------~-~~~~r~~IGy 2016 (2272)
T TIGR01257 1954 AVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGD----TTVTSG----DATVAG-KSILT-------N-ISDVHQNMGY 2016 (2272)
T ss_pred EEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCC----CCCCcc----EEEECC-EECcc-------h-HHHHhhhEEE
Confidence 55677888999999999999999999999999999 999999 998887 44310 1 1123367999
Q ss_pred cccCCCCCCCccceeeEEeecCcccccCCcccccc---cCcCCc---cccCCccEEEeccCccCccchhhhhcCCCceee
Q psy16304 265 VSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTS---ATHLPL---VDFRSVPILVLGLDNAGKSSIIKRILGEPIISL 338 (537)
Q Consensus 265 v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~---~~~l~~---~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrv 338 (537)
++|...++..++. .+.+.. +.+... .......+..+|+.... .+.+.+|||||+||+
T Consensus 2017 ~pQ~~~L~~~LTv----------------~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~-dk~~~~LSGGqKqRL 2079 (2272)
T TIGR01257 2017 CPQFDAIDDLLTG----------------REHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYA-DRLAGTYSGGNKRKL 2079 (2272)
T ss_pred EeccccCCCCCCH----------------HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHh-cCChhhCCHHHHHHH
Confidence 9999776554333 111111 111110 01122334567776654 455899999999999
Q ss_pred ecccccccceeccCCceEEEEEe--cCch--hhHHHHHHHHHh--cCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEE
Q psy16304 339 VPTVGFNRARVEYGNKYEVFLYD--LGGS--EDFRTIWKQYLG--TVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYL 410 (537)
Q Consensus 339 s~ti~la~all~~~e~p~lllLD--T~Gl--~~~~~l~~~~~~--~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~ 410 (537)
++|++++. + |++++|| |+|+ ...+.+|+.+.+ +.+.+|+++ +|++++.+..+ +++|++|+++..
T Consensus 2080 ----slA~ALi~-~--P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILt-TH~mee~e~lcDrV~IL~~G~i~~~ 2151 (2272)
T TIGR01257 2080 ----STAIALIG-C--PPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLT-SHSMEECEALCTRLAIMVKGAFQCL 2151 (2272)
T ss_pred ----HHHHHHhc-C--CCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE-eCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999996 4 8999999 9999 444556654432 223466666 89998887655 999999999999
Q ss_pred ecccchhhhhcc
Q psy16304 411 ISAKNLSNGFKK 422 (537)
Q Consensus 411 g~nkdl~~~~~~ 422 (537)
|++.++++++..
T Consensus 2152 Gs~q~Lk~~~g~ 2163 (2272)
T TIGR01257 2152 GTIQHLKSKFGD 2163 (2272)
T ss_pred CCHHHHHHHhCC
Confidence 999998776653
No 80
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.82 E-value=2.6e-21 Score=179.06 Aligned_cols=187 Identities=17% Similarity=0.124 Sum_probs=131.0
Q ss_pred cccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCC
Q psy16304 190 SLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTP 269 (537)
Q Consensus 190 ~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~ 269 (537)
++.+..|++++|+||+|||||||+|+|+|. ..|.+| .+.++| .+. .+..... +-++++||+.
T Consensus 19 dl~v~~ge~vAi~GpSGaGKSTLLnLIAGF----~~P~~G----~i~i~g-~d~-----t~~~P~~----RPVSmlFQEn 80 (231)
T COG3840 19 DLTVPAGEIVAILGPSGAGKSTLLNLIAGF----ETPASG----EILING-VDH-----TASPPAE----RPVSMLFQEN 80 (231)
T ss_pred EEeecCCcEEEEECCCCccHHHHHHHHHhc----cCCCCc----eEEEcC-eec-----CcCCccc----CChhhhhhcc
Confidence 356779999999999999999999999999 999999 888876 333 2222222 4578899999
Q ss_pred CCCCCccceeeEEeecCcccccCCcccccccCcCCc----cccCCccEEEeccCccCccchhhhhcCCCceeeecccccc
Q psy16304 270 LGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPL----VDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN 345 (537)
Q Consensus 270 ~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~----~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la 345 (537)
.+|...+.. +++.- ..-..++. ..+.+.....+|+.+.. .+++.+||||||||+ ++|
T Consensus 81 NLFaHLtV~------------qNigL--Gl~P~LkL~a~~r~~v~~aa~~vGl~~~~-~RLP~~LSGGqRQRv----ALA 141 (231)
T COG3840 81 NLFAHLTVA------------QNIGL--GLSPGLKLNAEQREKVEAAAAQVGLAGFL-KRLPGELSGGQRQRV----ALA 141 (231)
T ss_pred ccchhhhhh------------hhhcc--cCCcccccCHHHHHHHHHHHHHhChhhHh-hhCccccCchHHHHH----HHH
Confidence 988765541 11111 11111111 11222334478888887 456999999999999 999
Q ss_pred cceeccCCceEEEEEe--cCch-----hhHHHHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccch
Q psy16304 346 RARVEYGNKYEVFLYD--LGGS-----EDFRTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 346 ~all~~~e~p~lllLD--T~Gl-----~~~~~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl 416 (537)
|.++. + -++++|| .+.+ .+...+..++..+.+.+++++ +|..+...... ++++++|++...+...++
T Consensus 142 RclvR-~--~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmV-TH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~ 217 (231)
T COG3840 142 RCLVR-E--QPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMV-THHPEDAARIADRVVFLDNGRIAAQGSTQEL 217 (231)
T ss_pred HHHhc-c--CCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEE-eCCHHHHHHhhhceEEEeCCEEEeeccHHHH
Confidence 99997 4 4899999 5555 333334456666666677777 67766666544 889999999998887776
Q ss_pred h
Q psy16304 417 S 417 (537)
Q Consensus 417 ~ 417 (537)
.
T Consensus 218 ~ 218 (231)
T COG3840 218 L 218 (231)
T ss_pred h
Confidence 3
No 81
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=1.4e-21 Score=193.91 Aligned_cols=194 Identities=13% Similarity=0.102 Sum_probs=124.4
Q ss_pred cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304 188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ 267 (537)
Q Consensus 188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q 267 (537)
++++.+.+|++++|+|+||||||||+++|+|. +.|++| ++.++| ..+..++ .. +..+++++|
T Consensus 20 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~~~~G----~i~~~g-~~~~~~~-----~~----~~~i~~v~q 81 (239)
T cd03296 20 DVSLDIPSGELVALLGPSGSGKTTLLRLIAGL----ERPDSG----TILFGG-EDATDVP-----VQ----ERNVGFVFQ 81 (239)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCce----EEEECC-EECCcCC-----cc----ccceEEEec
Confidence 45677889999999999999999999999999 999999 899887 4432111 11 256899999
Q ss_pred CCCCCCCccc--eeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccc
Q psy16304 268 TPLGRPDSRT--CQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN 345 (537)
Q Consensus 268 ~~~l~~~~~~--~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la 345 (537)
++.++...+. .+.+... ....................+..+|+.... ...+.+||+||+||+ +++
T Consensus 82 ~~~~~~~~tv~e~l~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrl----~la 148 (239)
T cd03296 82 HYALFRHMTVFDNVAFGLR--------VKPRSERPPEAEIRAKVHELLKLVQLDWLA-DRYPAQLSGGQRQRV----ALA 148 (239)
T ss_pred CCcccCCCCHHHHHhhhhh--------hccccccCCHHHHHHHHHHHHHHcCChhhh-hcChhhCCHHHHHHH----HHH
Confidence 9775543222 0000000 000000000000001112234456665443 444889999999999 999
Q ss_pred cceeccCCceEEEEEe--cCchhhH--HH---HHHHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEecccch
Q psy16304 346 RARVEYGNKYEVFLYD--LGGSEDF--RT---IWKQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 346 ~all~~~e~p~lllLD--T~Gl~~~--~~---l~~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~nkdl 416 (537)
++++. + |++++|| |+|++.. .. ++..+.++.+.+++++ +|+....... + ++++++|+++..+..+++
T Consensus 149 ~al~~-~--p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~-sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 224 (239)
T cd03296 149 RALAV-E--PKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFV-THDQEEALEVADRVVVMNKGRIEQVGTPDEV 224 (239)
T ss_pred HHHhc-C--CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEE-eCCHHHHHHhCCEEEEEECCeEEEecCHHHH
Confidence 99996 5 8999999 9999333 22 2234333324566666 7888766543 3 888999999887776655
No 82
>KOG0055|consensus
Probab=99.82 E-value=1.6e-21 Score=223.18 Aligned_cols=262 Identities=16% Similarity=0.072 Sum_probs=173.8
Q ss_pred HHHhhhcccccccccccccccCccccccccCCCCCCchhHHHHHHHHHHHHhhhcccccCCCcccCCCCCCCCCcchhhc
Q psy16304 99 ILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAPTFEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDDPAPTFENF 178 (537)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~~~~~~~~~~~ 178 (537)
++..+-.+..++.+..+...+++.++..+.++ |.. .+. ++.. .-...++++|+...|+++. |
T Consensus 304 Lgqa~p~l~~f~~a~~aa~~I~~~i~~~~~i~-~~~-~~~----~~~~-~~~g~ief~nV~FsYPsRp---d-------- 365 (1228)
T KOG0055|consen 304 LGQASPHLSAFAKARAAAYRIFETIDRKPSID-PYS-KGG----RVLS-SIKGEIEFRNVCFSYPSRP---D-------- 365 (1228)
T ss_pred hhccccchHHHhccccchHHHHHHhcCCCCCC-ccc-ccC----Cccc-ccccceEEEEEEecCCCCC---c--------
Confidence 44455556666777778888888777554443 221 111 0000 0134667788888777664 2
Q ss_pred ccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHH
Q psy16304 179 LDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIW 258 (537)
Q Consensus 179 ~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~ 258 (537)
+.+-+.+++.+++|+.++|||++|+||||++.+|.+. +.|++| +|.++| .++..++. ..+
T Consensus 366 ----v~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rf----ydP~~G----~V~idG-~di~~~~~---~~l---- 425 (1228)
T KOG0055|consen 366 ----VKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARF----YDPTSG----EVLIDG-EDIRNLNL---KWL---- 425 (1228)
T ss_pred ----chhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHh----cCCCCc----eEEEcC-ccchhcch---HHH----
Confidence 2234456788889999999999999999999999999 999999 999997 76666655 233
Q ss_pred HhhhhccccCCCCCCC-ccceeeEEee-cCcccccCCcccc---cccCcCCccccCCccEEEeccCccCccchhhhhcCC
Q psy16304 259 KQYLGTVSQTPLGRPD-SRTCQVYLIM-CGVHQVSGIPDEL---TSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGE 333 (537)
Q Consensus 259 ~~~i~~v~Q~~~l~~~-~~~~il~v~D-s~~~~~~~l~~~l---~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG 333 (537)
+..+|.|+|+|.+|.. ..+++.+.-+ +..++..++.+.. +.+..++...+ ..+|..+. +||||
T Consensus 426 r~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~-----T~vge~g~-------qLSGG 493 (1228)
T KOG0055|consen 426 RSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYD-----TLVGERGV-------QLSGG 493 (1228)
T ss_pred HhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhc-----ccccCCCC-------CCChH
Confidence 4789999999987765 4444444442 2222222111111 11111111111 13443332 39999
Q ss_pred CceeeecccccccceeccCCceEEEEEe--cCchhhHHHHH-HHHHh---cCCEEEEEEeCCCcchhhhhh-hhhhcCCc
Q psy16304 334 PIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRTIW-KQYLG---TVSQTLLVSHSLSGRPDDRCQ-VYLMSCNC 406 (537)
Q Consensus 334 ~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~l~-~~~~~---~~~~vIlVvdshd~~~~~~~~-i~ll~~G~ 406 (537)
|+||+ ++||+++. + |++|+|| |++|+...+.. ++.++ .+. +.+|+ +|+..+...++ ++++++|+
T Consensus 494 QKQRI----AIARalv~-~--P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~gr-TTivV-aHRLStIrnaD~I~v~~~G~ 564 (1228)
T KOG0055|consen 494 QKQRI----AIARALVR-N--PKILLLDEATSALDAESERVVQEALDKASKGR-TTIVV-AHRLSTIRNADKIAVMEEGK 564 (1228)
T ss_pred HHHHH----HHHHHHHh-C--CCEEEecCcccccCHHHHHHHHHHHHHhhcCC-eEEEE-eeehhhhhccCEEEEEECCE
Confidence 99999 99999996 4 8999999 99996554433 32222 334 55555 78888888877 99999999
Q ss_pred EEEEecccchhhh
Q psy16304 407 QVYLISAKNLSNG 419 (537)
Q Consensus 407 ii~~g~nkdl~~~ 419 (537)
++..|++++|...
T Consensus 565 IvE~G~h~ELi~~ 577 (1228)
T KOG0055|consen 565 IVEQGTHDELIAL 577 (1228)
T ss_pred EEEecCHHHHHhc
Confidence 9999999998543
No 83
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.82 E-value=2.5e-21 Score=190.28 Aligned_cols=191 Identities=17% Similarity=0.157 Sum_probs=118.9
Q ss_pred ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304 187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS 266 (537)
Q Consensus 187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~ 266 (537)
.++++.+.+|++++|+|+||||||||+++|+|. +.|+.| ++.++| ..+..++. .....++..+++++
T Consensus 22 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~----~~~~~G----~i~~~g-~~~~~~~~----~~~~~~~~~i~~~~ 88 (228)
T cd03257 22 DDVSFSIKKGETLGLVGESGSGKSTLARAILGL----LKPTSG----SIIFDG-KDLLKLSR----RLRKIRRKEIQMVF 88 (228)
T ss_pred cCceeEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCc----eEEECC-EEccccch----hhHHHhhccEEEEe
Confidence 345677889999999999999999999999999 999999 899887 44322111 00112346799999
Q ss_pred cCCC--CCCCccceeeEEeecCcccccCCcccccccC-cCCcc--cc-CCccEEEeccCccCccchhhhhcCCCceeeec
Q psy16304 267 QTPL--GRPDSRTCQVYLIMCGVHQVSGIPDELTSAT-HLPLV--DF-RSVPILVLGLDNAGKSSIIKRILGEPIISLVP 340 (537)
Q Consensus 267 Q~~~--l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~-~l~~~--~~-~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ 340 (537)
|++. ++...+. .+ ++...+.... ..... .. ....+..+|+........+.+|||||+||+
T Consensus 89 q~~~~~~~~~~tv-----~~-------nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv-- 154 (228)
T cd03257 89 QDPMSSLNPRMTI-----GE-------QIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRV-- 154 (228)
T ss_pred cCchhhcCCcCCH-----HH-------HHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHH--
Confidence 9973 2222211 00 0000000000 00000 00 012233456532112344789999999999
Q ss_pred ccccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhh-hh-hhhhcCCcEEEE
Q psy16304 341 TVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDR-CQ-VYLMSCNCQVYL 410 (537)
Q Consensus 341 ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~-~~-i~ll~~G~ii~~ 410 (537)
+++++++. + |++++|| |+|++.. ...+.++.++.+.+++++ +|+...... ++ ++++++|+++..
T Consensus 155 --~laral~~-~--p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~-sH~~~~~~~~~d~i~~l~~G~i~~~ 227 (228)
T cd03257 155 --AIARALAL-N--PKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFI-THDLGVVAKIADRVAVMYAGKIVEE 227 (228)
T ss_pred --HHHHHHhc-C--CCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEE-eCCHHHHHHhcCeEEEEeCCEEEec
Confidence 99999996 5 8999999 9998333 223334433324567777 888887764 33 888999987643
No 84
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.82 E-value=5e-21 Score=215.31 Aligned_cols=217 Identities=18% Similarity=0.158 Sum_probs=134.7
Q ss_pred hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304 152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN 231 (537)
Q Consensus 152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t 231 (537)
++.++++.+.|+...+.. +++|.+.+|+++||+|+||||||||+++|+|. ..|++|
T Consensus 3 ~l~i~~ls~~~~~~~il~------------------~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~----~~p~~G-- 58 (635)
T PRK11147 3 LISIHGAWLSFSDAPLLD------------------NAELHIEDNERVCLVGRNGAGKSTLMKILNGE----VLLDDG-- 58 (635)
T ss_pred EEEEeeEEEEeCCceeEe------------------CcEEEECCCCEEEEECCCCCCHHHHHHHHcCC----CCCCCe--
Confidence 567888888876543333 34577889999999999999999999999999 999999
Q ss_pred eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCC-----------CCCccceeeEEeecCccc---ccCCcccc
Q psy16304 232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG-----------RPDSRTCQVYLIMCGVHQ---VSGIPDEL 297 (537)
Q Consensus 232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l-----------~~~~~~~il~v~Ds~~~~---~~~l~~~l 297 (537)
+|.++++..+..+.+.... ...+.++|.... +...... ...+...+. +..+...+
T Consensus 59 --~I~~~~~~~~~~l~q~~~~-------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 127 (635)
T PRK11147 59 --RIIYEQDLIVARLQQDPPR-------NVEGTVYDFVAEGIEEQAEYLKRYHDISHL--VETDPSEKNLNELAKLQEQL 127 (635)
T ss_pred --EEEeCCCCEEEEeccCCCC-------CCCCCHHHHHHHhhHHHHHHHHHHHHHHHH--hccCchHHHHHHHHHHHHHH
Confidence 8888764444443321100 001111111000 0000000 000000000 00000000
Q ss_pred cccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHHHHH-HH
Q psy16304 298 TSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRTIW-KQ 374 (537)
Q Consensus 298 ~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~l~-~~ 374 (537)
.....+....+....+..+|+.. ...+.+|||||++|+ +++++++. + |++++|| |+|++.....| ..
T Consensus 128 ~~~~~~~~~~~~~~~l~~lgl~~---~~~~~~LSgGekqRv----~LAraL~~-~--P~lLLLDEPt~~LD~~~~~~L~~ 197 (635)
T PRK11147 128 DHHNLWQLENRINEVLAQLGLDP---DAALSSLSGGWLRKA----ALGRALVS-N--PDVLLLDEPTNHLDIETIEWLEG 197 (635)
T ss_pred HhcCcccHHHHHHHHHHhCCCCC---CCchhhcCHHHHHHH----HHHHHHhc-C--CCEEEEcCCCCccCHHHHHHHHH
Confidence 00111111122334455677752 455899999999999 99999996 5 8999999 99997666655 67
Q ss_pred HHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEeccc
Q psy16304 375 YLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAK 414 (537)
Q Consensus 375 ~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nk 414 (537)
+++...++||++ +||+.+.+.++ ++.+++|+++.+.++.
T Consensus 198 ~L~~~~~tvliv-sHd~~~l~~~~d~i~~L~~G~i~~~~g~~ 238 (635)
T PRK11147 198 FLKTFQGSIIFI-SHDRSFIRNMATRIVDLDRGKLVSYPGNY 238 (635)
T ss_pred HHHhCCCEEEEE-eCCHHHHHHhcCeEEEEECCEEEEecCCH
Confidence 776666778888 89999988754 8889999998776665
No 85
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=1.9e-21 Score=201.73 Aligned_cols=220 Identities=10% Similarity=0.029 Sum_probs=141.6
Q ss_pred hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCcccc----Cc
Q psy16304 152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLV----PT 227 (537)
Q Consensus 152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~----Pt 227 (537)
++.++++.+.|+...- ...+..+++|.+.+|+++||||+||||||||+++|+|. +. |+
T Consensus 3 ~L~v~~l~~~~~~~~~--------------~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gl----l~~~~~~~ 64 (326)
T PRK11022 3 LLNVDKLSVHFGDESA--------------PFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGL----IDYPGRVM 64 (326)
T ss_pred eEEEeCeEEEECCCCc--------------cEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcC----CCCCCCCc
Confidence 4678888887754210 01245567788999999999999999999999999998 65 48
Q ss_pred eeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCC--CCCCccceeeEEeecCcccccCCcccccccCcCC-
Q psy16304 228 VGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL--GRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP- 304 (537)
Q Consensus 228 ~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~--l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~- 304 (537)
+| +|.++| .++...+. ...+......++++||++. +.+.++.. .++.+.+.......
T Consensus 65 ~G----~i~~~G-~~i~~~~~---~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~------------~~i~~~l~~~~~~~~ 124 (326)
T PRK11022 65 AE----KLEFNG-QDLQRISE---KERRNLVGAEVAMIFQDPMTSLNPCYTVG------------FQIMEAIKVHQGGNK 124 (326)
T ss_pred ce----EEEECC-EECCcCCH---HHHHHHhCCCEEEEecCchhhcCCcCCHH------------HHHHHHHHHhcCCCH
Confidence 89 899987 44322111 1222223346899999974 22222110 00111111000000
Q ss_pred --ccccCCccEEEeccCcc--CccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-----HHHHH
Q psy16304 305 --LVDFRSVPILVLGLDNA--GKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWK 373 (537)
Q Consensus 305 --~~~~~~~~L~llGl~~~--gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~ 373 (537)
...++...+..+|+... .....+.+|||||+||+ +++++++. + |+++++| |++++.. ..++.
T Consensus 125 ~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv----~iArAL~~-~--P~llilDEPts~LD~~~~~~il~lL~ 197 (326)
T PRK11022 125 KTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRV----MIAMAIAC-R--PKLLIADEPTTALDVTIQAQIIELLL 197 (326)
T ss_pred HHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHH----HHHHHHHh-C--CCEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 01122334456677531 12455899999999999 99999996 5 8999999 9999322 23334
Q ss_pred HHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEecccchh
Q psy16304 374 QYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLISAKNLS 417 (537)
Q Consensus 374 ~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~nkdl~ 417 (537)
.+.++.+.+++++ +||....... + +++|..|+++..+...++.
T Consensus 198 ~l~~~~g~til~i-THdl~~~~~~adri~vm~~G~ive~g~~~~~~ 242 (326)
T PRK11022 198 ELQQKENMALVLI-THDLALVAEAAHKIIVMYAGQVVETGKAHDIF 242 (326)
T ss_pred HHHHhcCCEEEEE-eCCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 4444445567777 8998877543 3 9999999999998877764
No 86
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=1.4e-21 Score=203.15 Aligned_cols=224 Identities=15% Similarity=0.106 Sum_probs=141.9
Q ss_pred hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304 152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN 231 (537)
Q Consensus 152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t 231 (537)
++.++++.+.|+... + . ..+..+++|.+.+|+++||+|+||||||||+++|+|.......|++|
T Consensus 3 ~L~v~~l~~~y~~~~---~-~----------~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G-- 66 (330)
T PRK15093 3 LLDIRNLTIEFKTSD---G-W----------VKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTAD-- 66 (330)
T ss_pred eEEEeeeEEEEeCCC---C-C----------EEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcce--
Confidence 467788888774321 0 0 12345677889999999999999999999999999982111136889
Q ss_pred eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCC--CCCccceeeEEeecCcccccCCcccccc--c-C----c
Q psy16304 232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG--RPDSRTCQVYLIMCGVHQVSGIPDELTS--A-T----H 302 (537)
Q Consensus 232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l--~~~~~~~il~v~Ds~~~~~~~l~~~l~~--~-~----~ 302 (537)
+|.++| .++..++. ...+......++++||++.. .+..+. . +++.+.+.. . . .
T Consensus 67 --~i~~~g-~~i~~~~~---~~~~~~~~~~i~~v~Q~~~~~l~p~~tv-----~-------~~l~~~~~~~~~~~~~~~~ 128 (330)
T PRK15093 67 --RMRFDD-IDLLRLSP---RERRKLVGHNVSMIFQEPQSCLDPSERV-----G-------RQLMQNIPGWTYKGRWWQR 128 (330)
T ss_pred --EEEECC-EECCcCCH---HHHHHHhCCCEEEEecCcchhcCccccH-----H-------HHHHHHHHhhhcccccccc
Confidence 999887 44322211 22222333579999999752 111111 0 000000000 0 0 0
Q ss_pred C-CccccCCccEEEeccCccC--ccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhh-----HHHHH
Q psy16304 303 L-PLVDFRSVPILVLGLDNAG--KSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSED-----FRTIW 372 (537)
Q Consensus 303 l-~~~~~~~~~L~llGl~~~g--Ks~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~-----~~~l~ 372 (537)
. ....+....+..+|+.... ..+.+.+|||||+||+ +++++++. + |+++++| |++++. +..++
T Consensus 129 ~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv----~iArAL~~-~--P~llilDEPts~LD~~~~~~i~~lL 201 (330)
T PRK15093 129 FGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKV----MIAIALAN-Q--PRLLIADEPTNAMEPTTQAQIFRLL 201 (330)
T ss_pred HHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHH----HHHHHHHC-C--CCEEEEeCCCCcCCHHHHHHHHHHH
Confidence 0 0011223345567776421 2455899999999999 99999996 5 8999999 999932 22333
Q ss_pred HHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchh
Q psy16304 373 KQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLS 417 (537)
Q Consensus 373 ~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~ 417 (537)
.++.++.+.+++++ +||.......+ +++|++|+++..|...++.
T Consensus 202 ~~l~~~~g~tii~i-tHdl~~v~~~~dri~vm~~G~ive~g~~~~i~ 247 (330)
T PRK15093 202 TRLNQNNNTTILLI-SHDLQMLSQWADKINVLYCGQTVETAPSKELV 247 (330)
T ss_pred HHHHHhcCCEEEEE-ECCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 44444445677777 89988886544 9999999999988877763
No 87
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.82 E-value=2.8e-21 Score=190.63 Aligned_cols=193 Identities=14% Similarity=0.099 Sum_probs=125.3
Q ss_pred ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304 187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS 266 (537)
Q Consensus 187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~ 266 (537)
.++++.+.+|++++|+|+||||||||+++|+|. ..|++| ++.++| ..+...+. ....+..+++++
T Consensus 17 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl----~~p~~G----~i~~~g-~~~~~~~~------~~~~~~~i~~~~ 81 (232)
T cd03218 17 NGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGL----VKPDSG----KILLDG-QDITKLPM------HKRARLGIGYLP 81 (232)
T ss_pred ccceeEecCCcEEEEECCCCCCHHHHHHHHhCC----CCCCCc----EEEECC-EecccCCH------hHHHhccEEEec
Confidence 345677889999999999999999999999999 999999 898887 43321111 111235689999
Q ss_pred cCCCCCCCccceeeEEeecCcccccCCcccccccCc--CCccccCCccEEEeccCccCccchhhhhcCCCceeeeccccc
Q psy16304 267 QTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATH--LPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF 344 (537)
Q Consensus 267 Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~--l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~l 344 (537)
|++.+++..+. .+ ++......... ..........+..+|+.... ...+..||+||+||+ ++
T Consensus 82 q~~~~~~~~tv-----~~-------~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrl----~l 144 (232)
T cd03218 82 QEASIFRKLTV-----EE-------NILAVLEIRGLSKKEREEKLEELLEEFHITHLR-KSKASSLSGGERRRV----EI 144 (232)
T ss_pred CCccccccCcH-----HH-------HHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhh-hCChhhCCHHHHHHH----HH
Confidence 98775544222 00 00000000000 00001112234456766544 344889999999999 99
Q ss_pred ccceeccCCceEEEEEe--cCchhhH--HH---HHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccc
Q psy16304 345 NRARVEYGNKYEVFLYD--LGGSEDF--RT---IWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKN 415 (537)
Q Consensus 345 a~all~~~e~p~lllLD--T~Gl~~~--~~---l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkd 415 (537)
+++++. + |+++++| |+|++.. .. ++..+.+. +.+++++ +|+.......+ ++++++|+++..+..++
T Consensus 145 a~al~~-~--p~llllDEPt~~LD~~~~~~~~~~l~~~~~~-~~tii~~-sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 219 (232)
T cd03218 145 ARALAT-N--PKFLLLDEPFAGVDPIAVQDIQKIIKILKDR-GIGVLIT-DHNVRETLSITDRAYIIYEGKVLAEGTPEE 219 (232)
T ss_pred HHHHhc-C--CCEEEecCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEE-eCCHHHHHHhCCEEEEEECCeEEEEeCHHH
Confidence 999997 5 8999999 9999332 22 23343332 4466666 88887666543 88999999987776555
Q ss_pred h
Q psy16304 416 L 416 (537)
Q Consensus 416 l 416 (537)
+
T Consensus 220 ~ 220 (232)
T cd03218 220 I 220 (232)
T ss_pred h
Confidence 4
No 88
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.82 E-value=3.1e-21 Score=192.51 Aligned_cols=216 Identities=16% Similarity=0.120 Sum_probs=137.2
Q ss_pred hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304 152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN 231 (537)
Q Consensus 152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t 231 (537)
++.++++.+.|+.... ..++++.+.+|++++|+|+||||||||+++|+|. ..|+.|
T Consensus 3 ~l~~~~l~~~~~~~~~------------------l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~----~~~~~G-- 58 (250)
T PRK11264 3 AIEVKNLVKKFHGQTV------------------LHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLL----EQPEAG-- 58 (250)
T ss_pred cEEEeceEEEECCeee------------------eccceEEEcCCCEEEEECCCCCCHHHHHHHHhcC----CCCCCe--
Confidence 4667788887654222 2345677889999999999999999999999999 899999
Q ss_pred eEEEEECCcEEEEEeecCCC-chhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC---ccc
Q psy16304 232 RARVEYGNKYEVFLYDLGGS-EDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVD 307 (537)
Q Consensus 232 ~~~i~i~g~~~i~~~D~~G~-~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~ 307 (537)
+|.++| ..+...+.... ......++..+++++|++.+++..+. .+ ++........... ...
T Consensus 59 --~i~~~g-~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv-----~e-------~l~~~~~~~~~~~~~~~~~ 123 (250)
T PRK11264 59 --TIRVGD-ITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTV-----LE-------NIIEGPVIVKGEPKEEATA 123 (250)
T ss_pred --EEEECC-EEccccccccchhhHHHHhhhhEEEEecCcccCCCCCH-----HH-------HHHHHHHHhcCCCHHHHHH
Confidence 898887 55432211000 00012234678999999775543222 00 0000000000000 001
Q ss_pred cCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH--HH---HHHHHHhcCC
Q psy16304 308 FRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RT---IWKQYLGTVS 380 (537)
Q Consensus 308 ~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~---l~~~~~~~~~ 380 (537)
.....+..+|+.... ...+.+|||||+||+ +++++++. + |+++++| |+|++.. .. .++.+.+. +
T Consensus 124 ~~~~~l~~~gl~~~~-~~~~~~LS~Gq~qrv----~la~al~~-~--p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~ 194 (250)
T PRK11264 124 RARELLAKVGLAGKE-TSYPRRLSGGQQQRV----AIARALAM-R--PEVILFDEPTSALDPELVGEVLNTIRQLAQE-K 194 (250)
T ss_pred HHHHHHHHcCCcchh-hCChhhCChHHHHHH----HHHHHHhc-C--CCEEEEeCCCccCCHHHHHHHHHHHHHHHhc-C
Confidence 112233455665443 445899999999999 99999996 5 8999999 9999333 22 22333333 4
Q ss_pred EEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccch
Q psy16304 381 QTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 381 ~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl 416 (537)
.+++++ +|+.......+ ++++++|+++..+..+++
T Consensus 195 ~tvi~~-tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 231 (250)
T PRK11264 195 RTMVIV-THEMSFARDVADRAIFMDQGRIVEQGPAKAL 231 (250)
T ss_pred CEEEEE-eCCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 566666 88888776533 899999999887766655
No 89
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.81 E-value=2.9e-21 Score=203.38 Aligned_cols=200 Identities=15% Similarity=0.124 Sum_probs=136.4
Q ss_pred ccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcE---EEEEeecCCCchhhHHHHhh
Q psy16304 185 LPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKY---EVFLYDLGGSEDFRTIWKQY 261 (537)
Q Consensus 185 ~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~---~i~~~D~~G~~~~r~~~~~~ 261 (537)
...+++|.+.+|++++|+|+||||||||+++|+|. +.|+.| +|.++|.. ++...+. ...+...+..
T Consensus 39 ~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl----~~p~~G----~I~idG~~~~~~i~~~~~---~~l~~~r~~~ 107 (382)
T TIGR03415 39 GVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGL----NPVSRG----SVLVKDGDGSIDVANCDA---ATLRRLRTHR 107 (382)
T ss_pred EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC----CCCCCc----EEEECCEecccccccCCH---HHHHHHhcCC
Confidence 45567888999999999999999999999999999 999999 99998721 1211111 1222223357
Q ss_pred hhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC---ccccCCccEEEeccCccCccchhhhhcCCCceee
Q psy16304 262 LGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISL 338 (537)
Q Consensus 262 i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrv 338 (537)
++++||++.+++..+. .+++...+. ...+. ...+....+..+|+.+.. ...+.+|||||+||+
T Consensus 108 i~~vfQ~~~l~p~~Tv------------~eNi~~~~~-~~g~~~~~~~~~a~e~le~vgL~~~~-~~~~~~LSgGq~QRV 173 (382)
T TIGR03415 108 VSMVFQKFALMPWLTV------------EENVAFGLE-MQGMPEAERRKRVDEQLELVGLAQWA-DKKPGELSGGMQQRV 173 (382)
T ss_pred EEEEECCCcCCCCCcH------------HHHHHHHHH-hcCCCHHHHHHHHHHHHHHcCCchhh-cCChhhCCHHHHHHH
Confidence 9999999987765433 111110000 00110 011223445577887654 555899999999999
Q ss_pred ecccccccceeccCCceEEEEEe--cCchhhH--HHHHH---HHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEE
Q psy16304 339 VPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIWK---QYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVY 409 (537)
Q Consensus 339 s~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l~~---~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~ 409 (537)
+++++++. + |+++++| |++++.. ..+++ .+.++.+.+++++ +||..+....+ +++|++|+++.
T Consensus 174 ----~LARALa~-~--P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~i-THdl~e~~~l~DrI~vl~~G~iv~ 245 (382)
T TIGR03415 174 ----GLARAFAM-D--ADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFV-SHDLDEALKIGNRIAIMEGGRIIQ 245 (382)
T ss_pred ----HHHHHHhc-C--CCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999996 5 8999999 9999322 22333 3333334567777 89988765533 99999999999
Q ss_pred Eecccchh
Q psy16304 410 LISAKNLS 417 (537)
Q Consensus 410 ~g~nkdl~ 417 (537)
.|+++++.
T Consensus 246 ~g~~~ei~ 253 (382)
T TIGR03415 246 HGTPEEIV 253 (382)
T ss_pred ecCHHHHh
Confidence 99887764
No 90
>KOG0056|consensus
Probab=99.81 E-value=1.5e-21 Score=202.61 Aligned_cols=260 Identities=14% Similarity=0.113 Sum_probs=170.7
Q ss_pred hHHHHHhhhcccccccccccccccCccccccccCCCCC--CchhHHHHHHHHHHHHhhhcccccCCCcccCCCCCCCCCc
Q psy16304 96 IWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPA--PTFEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDDPAP 173 (537)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~~~~~~ 173 (537)
+.|+-=.+.....||.++.-++++++++..++.+.|.+ ||+.. .+.-+.++|+.. .++|..
T Consensus 489 y~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P~a~pl~~----------~~G~i~fsnvtF-------~Y~p~k 551 (790)
T KOG0056|consen 489 YMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLPGAPPLKV----------TQGKIEFSNVTF-------AYDPGK 551 (790)
T ss_pred hCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCCCCCCccc----------cCCeEEEEEeEE-------ecCCCC
Confidence 34555555555556778888999999999887777655 44433 233444444444 456552
Q ss_pred chhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCch
Q psy16304 174 TFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSED 253 (537)
Q Consensus 174 ~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~ 253 (537)
+ .-.+++|++.+|..++||||+|+||||++++|.+. ++.++| .|.++| .++..+.+
T Consensus 552 ~----------vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRf----fdv~sG----sI~iDg-qdIrnvt~----- 607 (790)
T KOG0056|consen 552 P----------VLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRF----FDVNSG----SITIDG-QDIRNVTQ----- 607 (790)
T ss_pred c----------eeecceEEecCCcEEEEECCCCCchhHHHHHHHHH----hhccCc----eEEEcC-chHHHHHH-----
Confidence 2 23456788999999999999999999999999999 999999 999997 55544433
Q ss_pred hhHHHHhhhhccccCCCCCCC-ccceeeEEee-cCcccccCCcccc---cccCcCCccccCCccEEEeccCccCccchhh
Q psy16304 254 FRTIWKQYLGTVSQTPLGRPD-SRTCQVYLIM-CGVHQVSGIPDEL---TSATHLPLVDFRSVPILVLGLDNAGKSSIIK 328 (537)
Q Consensus 254 ~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~D-s~~~~~~~l~~~l---~~~~~l~~~~~~~~~L~llGl~~~gKs~li~ 328 (537)
...+..+|.|||+..+|.+ ...++-+.-. ++.++........ +.+-..+.... ..+|..+.
T Consensus 608 --~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~-----t~VGERGL------- 673 (790)
T KOG0056|consen 608 --SSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYN-----TRVGERGL------- 673 (790)
T ss_pred --HHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhh-----hhhhhccc-------
Confidence 3445889999999998854 2222222111 2222211111100 11111111111 14454443
Q ss_pred hhcCCCceeeecccccccceeccCCceEEEEEe--cCchh--hHHHHHHHHHhcC-CEEEEEEeCCCcchhhhhh-hhhh
Q psy16304 329 RILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSE--DFRTIWKQYLGTV-SQTLLVSHSLSGRPDDRCQ-VYLM 402 (537)
Q Consensus 329 ~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~--~~~~l~~~~~~~~-~~vIlVvdshd~~~~~~~~-i~ll 402 (537)
.||||++||| ++|++++. + |.+++|| |+.++ ..+.+...+.+-+ +-+-+|+ .|...+....+ +.++
T Consensus 674 kLSGGEKQRV----AiARtiLK-~--P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVv-AHRLSTivnAD~ILvi 745 (790)
T KOG0056|consen 674 KLSGGEKQRV----AIARTILK-A--PSIILLDEATSALDTNTERAIQAALARLCANRTTIVV-AHRLSTIVNADLILVI 745 (790)
T ss_pred ccCCcchhhH----HHHHHHhc-C--CcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEE-eeeehheecccEEEEE
Confidence 3999999999 99999995 4 8999999 88883 2333333443322 2345555 68888888777 9999
Q ss_pred cCCcEEEEecccchhh
Q psy16304 403 SCNCQVYLISAKNLSN 418 (537)
Q Consensus 403 ~~G~ii~~g~nkdl~~ 418 (537)
++|+|+.-|.++++..
T Consensus 746 ~~G~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 746 SNGRIVERGRHEELLK 761 (790)
T ss_pred eCCeEeecCcHHHHHh
Confidence 9999999999998854
No 91
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=3.1e-21 Score=195.17 Aligned_cols=193 Identities=16% Similarity=0.104 Sum_probs=123.8
Q ss_pred cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304 188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ 267 (537)
Q Consensus 188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q 267 (537)
++++.+.+|++++|+|+||||||||+++|+|. ..|+.| +|.++| .++...+. . ...++..+++++|
T Consensus 19 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~p~~G----~i~~~g-~~i~~~~~----~-~~~~~~~i~~v~q 84 (271)
T PRK13638 19 GLNLDFSLSPVTGLVGANGCGKSTLFMNLSGL----LRPQKG----AVLWQG-KPLDYSKR----G-LLALRQQVATVFQ 84 (271)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHcCC----CCCCcc----EEEECC-EEcccccC----C-HHHHHhheEEEee
Confidence 35677889999999999999999999999999 999999 899887 44421111 1 1123367899999
Q ss_pred CCCCCCCccceeeEEeecCcccccCCcccccccCcCC---ccccCCccEEEeccCccCccchhhhhcCCCceeeeccccc
Q psy16304 268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF 344 (537)
Q Consensus 268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~l 344 (537)
++..+..... +.+ ++...+... ... ........+..+|+.+.. ...+.+|||||+||+ ++
T Consensus 85 ~~~~~~~~~~----~~~-------~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgG~~qrl----~l 147 (271)
T PRK13638 85 DPEQQIFYTD----IDS-------DIAFSLRNL-GVPEAEITRRVDEALTLVDAQHFR-HQPIQCLSHGQKKRV----AI 147 (271)
T ss_pred Chhhcccccc----HHH-------HHHHHHHHc-CCCHHHHHHHHHHHHHHcCCHhHh-cCCchhCCHHHHHHH----HH
Confidence 8642111000 000 000000000 000 000112233355665443 445889999999999 99
Q ss_pred ccceeccCCceEEEEEe--cCchhhHH-----HHHHHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEecccc
Q psy16304 345 NRARVEYGNKYEVFLYD--LGGSEDFR-----TIWKQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLISAKN 415 (537)
Q Consensus 345 a~all~~~e~p~lllLD--T~Gl~~~~-----~l~~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~nkd 415 (537)
+++++. + |++++|| |+|++... .++..+.+. +.+++++ +|+....... + ++++++|+++..+.+.+
T Consensus 148 araL~~-~--p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~v-tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 222 (271)
T PRK13638 148 AGALVL-Q--ARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQ-GNHVIIS-SHDIDLIYEISDAVYVLRQGQILTHGAPGE 222 (271)
T ss_pred HHHHHc-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEE-eCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999996 5 8999999 99994332 233343333 3466666 7888877543 3 88999999998887665
Q ss_pred h
Q psy16304 416 L 416 (537)
Q Consensus 416 l 416 (537)
+
T Consensus 223 ~ 223 (271)
T PRK13638 223 V 223 (271)
T ss_pred H
Confidence 5
No 92
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.81 E-value=2.4e-21 Score=189.34 Aligned_cols=185 Identities=18% Similarity=0.111 Sum_probs=121.8
Q ss_pred ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304 187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS 266 (537)
Q Consensus 187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~ 266 (537)
.++++.+.+|++++|+|+||||||||+++|+|. +.|++| +|.++| ..+.. . ...++..+++++
T Consensus 22 ~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~~~~G----~i~~~g-~~~~~--~------~~~~~~~i~~~~ 84 (218)
T cd03266 22 DGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGL----LEPDAG----FATVDG-FDVVK--E------PAEARRRLGFVS 84 (218)
T ss_pred cceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC----cCCCCc----eEEECC-EEccc--C------HHHHHhhEEEec
Confidence 345677889999999999999999999999999 999999 899887 44421 0 112346799999
Q ss_pred cCCCCCCCccceeeEEeecCcccccCCcccccc--cCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccccc
Q psy16304 267 QTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTS--ATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF 344 (537)
Q Consensus 267 Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~--~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~l 344 (537)
|++.++...+.. +++...... ........+....+..+|+.... ...+.+|||||+||+ ++
T Consensus 85 q~~~~~~~~tv~------------e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv----~l 147 (218)
T cd03266 85 DSTGLYDRLTAR------------ENLEYFAGLYGLKGDELTARLEELADRLGMEELL-DRRVGGFSTGMRQKV----AI 147 (218)
T ss_pred CCcccCcCCCHH------------HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH-hhhhhhcCHHHHHHH----HH
Confidence 998765543320 000000000 00000011122334456765443 445899999999999 99
Q ss_pred ccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEE
Q psy16304 345 NRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYL 410 (537)
Q Consensus 345 a~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~ 410 (537)
+++++. + |+++++| |+|++.. ...+..+.+. +.+++++ +|+.......+ ++++++|+++..
T Consensus 148 aral~~-~--p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~~-tH~~~~~~~~~d~i~~l~~G~i~~~ 217 (218)
T cd03266 148 ARALVH-D--PPVLLLDEPTTGLDVMATRALREFIRQLRAL-GKCILFS-THIMQEVERLCDRVVVLHRGRVVYE 217 (218)
T ss_pred HHHHhc-C--CCEEEEcCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEE-eCCHHHHHHhcCEEEEEECCEEeec
Confidence 999996 5 8999999 9999333 2233344332 4566666 88887766533 888899987653
No 93
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.81 E-value=2e-21 Score=189.73 Aligned_cols=186 Identities=18% Similarity=0.211 Sum_probs=120.0
Q ss_pred ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304 187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS 266 (537)
Q Consensus 187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~ 266 (537)
.++++.+.+|++++|+|+||||||||+++|+|. ..|++| +|.++| .++..++. .. ...+++.+++++
T Consensus 20 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~~~~G----~i~~~g-~~~~~~~~---~~-~~~~~~~i~~~~ 86 (216)
T TIGR00960 20 DNLNFHITKGEMVFLVGHSGAGKSTFLKLILGI----EKPTRG----KIRFNG-QDLTRLRG---RE-IPFLRRHIGMVF 86 (216)
T ss_pred EeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCce----EEEECC-EehhhcCh---hH-HHHHHHhceEEe
Confidence 345677889999999999999999999999999 999999 899887 44322211 11 112346799999
Q ss_pred cCCCCCCCccceeeEEeecCcccccCCcccccc--cCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccccc
Q psy16304 267 QTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTS--ATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF 344 (537)
Q Consensus 267 Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~--~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~l 344 (537)
|++.++...+.. + ++...... ........+....+..+|+.... ...+.+|||||+||+ ++
T Consensus 87 q~~~~~~~~tv~-----e-------~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgG~~qrv----~l 149 (216)
T TIGR00960 87 QDHRLLSDRTVY-----D-------NVAFPLRIIGVPPRDANERVSAALEKVGLEGKA-HALPMQLSGGEQQRV----AI 149 (216)
T ss_pred cCccccccccHH-----H-------HHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhh-hCChhhCCHHHHHHH----HH
Confidence 998755433220 0 00000000 00000011122334456766543 445889999999999 99
Q ss_pred ccceeccCCceEEEEEe--cCchhhH--HHHH---HHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcE
Q psy16304 345 NRARVEYGNKYEVFLYD--LGGSEDF--RTIW---KQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQ 407 (537)
Q Consensus 345 a~all~~~e~p~lllLD--T~Gl~~~--~~l~---~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~i 407 (537)
+++++. + |+++++| |+|++.. ..++ ..+.+. +.+++++ +|+.+..... + ++++++|++
T Consensus 150 aral~~-~--p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~v-sH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 150 ARAIVH-K--PPLLLADEPTGNLDPELSRDIMRLFEEFNRR-GTTVLVA-THDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHhc-C--CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHC-CCEEEEE-eCCHHHHHHhCCEEEEEeCCcC
Confidence 999996 5 8999999 9999433 2222 333222 4567777 8998877654 3 778887763
No 94
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.81 E-value=2.5e-21 Score=189.66 Aligned_cols=192 Identities=16% Similarity=0.148 Sum_probs=121.2
Q ss_pred ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304 187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS 266 (537)
Q Consensus 187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~ 266 (537)
.++++.+.+|++++|+|+||||||||+++|+|. ..|+.| ++.++| ..+...+. ....+..+++++
T Consensus 17 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~~~~G----~i~~~g-~~~~~~~~------~~~~~~~i~~~~ 81 (222)
T cd03224 17 FGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGL----LPPRSG----SIRFDG-RDITGLPP------HERARAGIGYVP 81 (222)
T ss_pred eeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCC----CCCCCc----eEEECC-EEcCCCCH------HHHHhcCeEEec
Confidence 345677889999999999999999999999999 999999 899887 43321111 112235689999
Q ss_pred cCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEe-ccCccCccchhhhhcCCCceeeecccccc
Q psy16304 267 QTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVL-GLDNAGKSSIIKRILGEPIISLVPTVGFN 345 (537)
Q Consensus 267 Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~ll-Gl~~~gKs~li~~LSgG~rqrvs~ti~la 345 (537)
|++.+++.++.. + ++...................+..+ ++... ....+.+|||||+||+ +++
T Consensus 82 q~~~~~~~~t~~-----~-------~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~-~~~~~~~LS~G~~qrv----~la 144 (222)
T cd03224 82 EGRRIFPELTVE-----E-------NLLLGAYARRRAKRKARLERVYELFPRLKER-RKQLAGTLSGGEQQML----AIA 144 (222)
T ss_pred cccccCCCCcHH-----H-------HHHHHhhhcCchhHHHHHHHHHHHHHhhhhh-hhCchhhCCHHHHHHH----HHH
Confidence 998765543221 0 0000000000000000011112223 23322 2445889999999999 999
Q ss_pred cceeccCCceEEEEEe--cCchhhH--HHHH---HHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccc
Q psy16304 346 RARVEYGNKYEVFLYD--LGGSEDF--RTIW---KQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKN 415 (537)
Q Consensus 346 ~all~~~e~p~lllLD--T~Gl~~~--~~l~---~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkd 415 (537)
++++. + |+++++| |+|++.. ..++ ..+.+ .+.+++++ +|+.......+ ++++++|+++..+...+
T Consensus 145 ral~~-~--p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~-sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (222)
T cd03224 145 RALMS-R--PKLLLLDEPSEGLAPKIVEEIFEAIRELRD-EGVTILLV-EQNARFALEIADRAYVLERGRVVLEGTAAE 218 (222)
T ss_pred HHHhc-C--CCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEE-eCCHHHHHHhccEEEEeeCCeEEEeCCHHH
Confidence 99996 5 8999999 9999332 2233 33333 34566666 88888765533 88899999887665443
No 95
>PRK10908 cell division protein FtsE; Provisional
Probab=99.81 E-value=2.1e-21 Score=190.44 Aligned_cols=186 Identities=17% Similarity=0.162 Sum_probs=120.9
Q ss_pred cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304 188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ 267 (537)
Q Consensus 188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q 267 (537)
++++.+.+|++++|+|+||||||||+++|+|. +.|++| +|.++| .++..++. .. ...++..+++++|
T Consensus 20 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~----~~~~~G----~i~~~g-~~i~~~~~---~~-~~~~~~~i~~~~q 86 (222)
T PRK10908 20 GVTFHMRPGEMAFLTGHSGAGKSTLLKLICGI----ERPSAG----KIWFSG-HDITRLKN---RE-VPFLRRQIGMIFQ 86 (222)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCce----EEEECC-EEcccCCh---hH-HHHHHhheEEEec
Confidence 45677889999999999999999999999999 999999 899887 44432211 11 1123467999999
Q ss_pred CCCCCCCccceeeEEeecCcccccCCcccccccCcCCc---cccCCccEEEeccCccCccchhhhhcCCCceeeeccccc
Q psy16304 268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPL---VDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF 344 (537)
Q Consensus 268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~---~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~l 344 (537)
++.++...+.. + ++..... ...... .......+..+|+.+.. .+.+.+||+||+||+ ++
T Consensus 87 ~~~~~~~~tv~-----~-------~l~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv----~l 148 (222)
T PRK10908 87 DHHLLMDRTVY-----D-------NVAIPLI-IAGASGDDIRRRVSAALDKVGLLDKA-KNFPIQLSGGEQQRV----GI 148 (222)
T ss_pred CccccccccHH-----H-------HHHhHHH-hcCCCHHHHHHHHHHHHHHcCChhhh-hCCchhCCHHHHHHH----HH
Confidence 97754432220 0 0000000 000000 00112233455665432 445889999999999 99
Q ss_pred ccceeccCCceEEEEEe--cCchhhH--HHH---HHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEE
Q psy16304 345 NRARVEYGNKYEVFLYD--LGGSEDF--RTI---WKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVY 409 (537)
Q Consensus 345 a~all~~~e~p~lllLD--T~Gl~~~--~~l---~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~ 409 (537)
+++++. + |+++++| |+|++.. ..+ +..+.+. +.+++++ +|+.......+ ++++++|+++.
T Consensus 149 aral~~-~--p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiii~-sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 149 ARAVVN-K--PAVLLADEPTGNLDDALSEGILRLFEEFNRV-GVTVLMA-THDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHHc-C--CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHC-CCEEEEE-eCCHHHHHHhCCEEEEEECCEEcc
Confidence 999996 5 8999999 9999332 223 3444333 4567777 89988877643 88889998754
No 96
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=2.6e-21 Score=192.30 Aligned_cols=192 Identities=17% Similarity=0.171 Sum_probs=125.3
Q ss_pred cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304 188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ 267 (537)
Q Consensus 188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q 267 (537)
.+++.+.+|++++|+|+||||||||+++|+|. ..|+.| +|.++| ..+..++. ...+..+++++|
T Consensus 19 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~----~~~~~G----~i~~~g-~~~~~~~~-------~~~~~~i~~~~q 82 (242)
T cd03295 19 NLNLEIAKGEFLVLIGPSGSGKTTTMKMINRL----IEPTSG----EIFIDG-EDIREQDP-------VELRRKIGYVIQ 82 (242)
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHhcC----CCCCCc----eEEECC-eEcCcCCh-------HHhhcceEEEcc
Confidence 45677889999999999999999999999999 999999 898887 44322111 122357899999
Q ss_pred CCCCCCCccceeeEEeecCcccccCCcccccccCcCC---ccccCCccEEEeccCc-cCccchhhhhcCCCceeeecccc
Q psy16304 268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDFRSVPILVLGLDN-AGKSSIIKRILGEPIISLVPTVG 343 (537)
Q Consensus 268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~~~~~L~llGl~~-~gKs~li~~LSgG~rqrvs~ti~ 343 (537)
++.+++..+. .+++.... ...... ........+..+|+.. ......+.+|||||+||+ +
T Consensus 83 ~~~~~~~~tv------------~e~l~~~~-~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv----~ 145 (242)
T cd03295 83 QIGLFPHMTV------------EENIALVP-KLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRV----G 145 (242)
T ss_pred CccccCCCcH------------HHHHHHHH-HHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHH----H
Confidence 9775543222 00010000 000000 0111223344566663 112455889999999999 9
Q ss_pred cccceeccCCceEEEEEe--cCchhhHH--H---HHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEeccc
Q psy16304 344 FNRARVEYGNKYEVFLYD--LGGSEDFR--T---IWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAK 414 (537)
Q Consensus 344 la~all~~~e~p~lllLD--T~Gl~~~~--~---l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nk 414 (537)
++++++. + |+++++| |+|++... . .+..+.+..+.+++++ +|+.......+ ++++++|+++..+..+
T Consensus 146 laral~~-~--p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~-sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 221 (242)
T cd03295 146 VARALAA-D--PPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFV-THDIDEAFRLADRIAIMKNGEIVQVGTPD 221 (242)
T ss_pred HHHHHhc-C--CCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEE-ecCHHHHHHhCCEEEEEECCEEEEecCHH
Confidence 9999996 5 8999999 99994332 2 2233333324566666 88887665433 8899999998776655
Q ss_pred ch
Q psy16304 415 NL 416 (537)
Q Consensus 415 dl 416 (537)
++
T Consensus 222 ~~ 223 (242)
T cd03295 222 EI 223 (242)
T ss_pred HH
Confidence 54
No 97
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.81 E-value=2.4e-21 Score=194.41 Aligned_cols=219 Identities=14% Similarity=0.080 Sum_probs=139.1
Q ss_pred hhhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304 150 GILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG 229 (537)
Q Consensus 150 ~~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G 229 (537)
+..+.++++.+.|++... ..++++.+.+|++++|+|+||||||||+++|+|. +.|++|
T Consensus 3 ~~~l~~~~l~~~~~~~~~------------------l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~----~~~~~G 60 (257)
T PRK10619 3 ENKLNVIDLHKRYGEHEV------------------LKGVSLQANAGDVISIIGSSGSGKSTFLRCINFL----EKPSEG 60 (257)
T ss_pred CccEEEeeeEEEECCEEE------------------EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCe
Confidence 445677888887653221 2345677889999999999999999999999999 899999
Q ss_pred eeeEEEEECCcEEEEEeec-CC----Cc-hhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcc-cccccC-
Q psy16304 230 FNRARVEYGNKYEVFLYDL-GG----SE-DFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPD-ELTSAT- 301 (537)
Q Consensus 230 ~t~~~i~i~g~~~i~~~D~-~G----~~-~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~-~l~~~~- 301 (537)
++.++| ..+..... .+ .. .....++..+++++|++.+++..+.. +++.. ......
T Consensus 61 ----~i~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~------------enl~~~~~~~~~~ 123 (257)
T PRK10619 61 ----SIVVNG-QTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVL------------ENVMEAPIQVLGL 123 (257)
T ss_pred ----EEEECC-EEcccccccccccccccchHHHHHhhceEEEecCcccCCCCcHH------------HHHHHHHHHhCCC
Confidence 999887 44422100 00 00 01123346799999998755432220 00000 000000
Q ss_pred -cCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH-----HHHH
Q psy16304 302 -HLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR-----TIWK 373 (537)
Q Consensus 302 -~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~-----~l~~ 373 (537)
......+....+..+|+........+.+|||||+||+ +++++++. + |+++++| |+|++... ..+.
T Consensus 124 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv----~laral~~-~--p~llllDEPt~~LD~~~~~~l~~~l~ 196 (257)
T PRK10619 124 SKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRV----SIARALAM-E--PEVLLFDEPTSALDPELVGEVLRIMQ 196 (257)
T ss_pred CHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHH----HHHHHHhc-C--CCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 0000011223344567765432445789999999999 99999996 5 8999999 99993332 2223
Q ss_pred HHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEecccch
Q psy16304 374 QYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 374 ~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~nkdl 416 (537)
.+.+ .+.+++++ +|+....... + ++++++|+++..+..+++
T Consensus 197 ~l~~-~g~tiiiv-sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 239 (257)
T PRK10619 197 QLAE-EGKTMVVV-THEMGFARHVSSHVIFLHQGKIEEEGAPEQL 239 (257)
T ss_pred HHHh-cCCEEEEE-eCCHHHHHHhcCEEEEEECCEEEEeCCHHHh
Confidence 3332 24566666 8998887754 3 889999999887766555
No 98
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=3.1e-21 Score=191.83 Aligned_cols=190 Identities=16% Similarity=0.119 Sum_probs=124.4
Q ss_pred cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304 188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ 267 (537)
Q Consensus 188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q 267 (537)
++++.+.+|++++|+|+||||||||+++|+|. ..|+.| +|.++| .++...+. ..++..+++++|
T Consensus 21 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~p~~G----~i~~~g-~~i~~~~~-------~~~~~~i~~~~q 84 (241)
T PRK14250 21 DISVKFEGGAIYTIVGPSGAGKSTLIKLINRL----IDPTEG----SILIDG-VDIKTIDV-------IDLRRKIGMVFQ 84 (241)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCc----EEEECC-EEhhhcCh-------HHhhhcEEEEec
Confidence 45677889999999999999999999999999 899999 999887 44321111 122357899999
Q ss_pred CCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccc
Q psy16304 268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA 347 (537)
Q Consensus 268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~a 347 (537)
++.++.. +. .+ ++.... ..... ...+....+..+|+........+.+|||||+||+ +++++
T Consensus 85 ~~~~~~~-tv-----~e-------~l~~~~-~~~~~-~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl----~la~a 145 (241)
T PRK14250 85 QPHLFEG-TV-----KD-------NIEYGP-MLKGE-KNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRV----SIART 145 (241)
T ss_pred Cchhchh-hH-----HH-------HHhcch-hhcCc-HHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHH----HHHHH
Confidence 9765431 11 00 000000 00000 0011122333566642112345889999999999 99999
Q ss_pred eeccCCceEEEEEe--cCchhhHHH-----HHHHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEecccch
Q psy16304 348 RVEYGNKYEVFLYD--LGGSEDFRT-----IWKQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 348 ll~~~e~p~lllLD--T~Gl~~~~~-----l~~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~nkdl 416 (537)
++. + |+++++| |+|++.... .+..+.+..+.+++++ +|+....... + ++++++|+++..+.++++
T Consensus 146 l~~-~--p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~-sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (241)
T PRK14250 146 LAN-N--PEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWI-THNMEQAKRIGDYTAFLNKGILVEYAKTYDF 219 (241)
T ss_pred Hhc-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEE-eccHHHHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 996 5 8999999 999943322 2233333224566666 8888876653 3 899999999888877765
No 99
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.81 E-value=2.4e-21 Score=201.14 Aligned_cols=221 Identities=11% Similarity=0.093 Sum_probs=142.7
Q ss_pred hhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCc---
Q psy16304 151 ILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPT--- 227 (537)
Q Consensus 151 ~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt--- 227 (537)
.++.++++.+.|+... + ...+..+++|.+.+|+++||+|+||||||||+++|+|. ..|+
T Consensus 11 ~~L~i~~l~~~~~~~~---~-----------~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl----~~p~~~~ 72 (330)
T PRK09473 11 ALLDVKDLRVTFSTPD---G-----------DVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGL----LAANGRI 72 (330)
T ss_pred ceEEEeCeEEEEecCC---C-----------CEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcC----CCCCCCC
Confidence 4567888888775321 0 02245567888999999999999999999999999999 7775
Q ss_pred eeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCC--CCCCccceeeEEeecCcccccCCcccccccCcCC-
Q psy16304 228 VGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL--GRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP- 304 (537)
Q Consensus 228 ~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~--l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~- 304 (537)
+| +|.++| .++..++. ...+......++++||++. +.+.++.. +++.+.+.......
T Consensus 73 sG----~I~~~G-~~i~~~~~---~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~------------~~i~~~~~~~~~~~~ 132 (330)
T PRK09473 73 GG----SATFNG-REILNLPE---KELNKLRAEQISMIFQDPMTSLNPYMRVG------------EQLMEVLMLHKGMSK 132 (330)
T ss_pred Ce----EEEECC-EECCcCCH---HHHHHHhcCCEEEEEcCchhhcCCCCCHH------------HHHHHHHHHhcCCCH
Confidence 89 999987 54432221 2222222347999999973 32222210 00111010000010
Q ss_pred --ccccCCccEEEeccCccC--ccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-----HHHHH
Q psy16304 305 --LVDFRSVPILVLGLDNAG--KSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWK 373 (537)
Q Consensus 305 --~~~~~~~~L~llGl~~~g--Ks~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~ 373 (537)
...+....+..+|+.+.. ....+.+|||||+||+ ++|++++. + |+++++| |++++.. ..++.
T Consensus 133 ~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv----~IArAL~~-~--P~llilDEPts~LD~~~~~~i~~lL~ 205 (330)
T PRK09473 133 AEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRV----MIAMALLC-R--PKLLIADEPTTALDVTVQAQIMTLLN 205 (330)
T ss_pred HHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHH----HHHHHHHc-C--CCEEEEeCCCccCCHHHHHHHHHHHH
Confidence 001122234456665321 1345889999999999 99999996 5 8999999 9999332 22334
Q ss_pred HHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEecccchh
Q psy16304 374 QYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLISAKNLS 417 (537)
Q Consensus 374 ~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~nkdl~ 417 (537)
.+.++.+.+++++ +||....... + +++|.+|+++..|..+++.
T Consensus 206 ~l~~~~g~til~i-THdl~~~~~~~Dri~vm~~G~ive~g~~~~i~ 250 (330)
T PRK09473 206 ELKREFNTAIIMI-THDLGVVAGICDKVLVMYAGRTMEYGNARDVF 250 (330)
T ss_pred HHHHHcCCEEEEE-ECCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 5544445667777 8998877643 3 9999999999998877764
No 100
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.81 E-value=3.3e-21 Score=193.60 Aligned_cols=193 Identities=13% Similarity=0.054 Sum_probs=125.1
Q ss_pred cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304 188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ 267 (537)
Q Consensus 188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q 267 (537)
++++.+.+|++++|+|+||||||||+++|+|. ..|+.| ++.++| ..+..++. ..+...+++++|
T Consensus 20 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~----~~p~~G----~i~~~g-~~~~~~~~-------~~~~~~i~~~~q 83 (258)
T PRK13548 20 DVSLTLRPGEVVAILGPNGAGKSTLLRALSGE----LSPDSG----EVRLNG-RPLADWSP-------AELARRRAVLPQ 83 (258)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCC----EEEECC-EEcccCCH-------HHhhhheEEEcc
Confidence 35677889999999999999999999999999 899999 999887 44322111 112356899999
Q ss_pred CCCCCCCccceeeEEeecCcccccCCcccccccC-cC-CccccCCccEEEeccCccCccchhhhhcCCCceeeecccccc
Q psy16304 268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSAT-HL-PLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN 345 (537)
Q Consensus 268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~-~l-~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la 345 (537)
++.++...+. .| ++........ .. .........+..+|+.... ...+.+|||||+||+ +++
T Consensus 84 ~~~~~~~~tv-----~e-------~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgGe~qrv----~la 146 (258)
T PRK13548 84 HSSLSFPFTV-----EE-------VVAMGRAPHGLSRAEDDALVAAALAQVDLAHLA-GRDYPQLSGGEQQRV----QLA 146 (258)
T ss_pred CCcCCCCCCH-----HH-------HHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHh-cCCcccCCHHHHHHH----HHH
Confidence 8765433221 11 0000000000 00 0001122334456765443 445899999999999 999
Q ss_pred cceec-----cCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEe
Q psy16304 346 RARVE-----YGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLI 411 (537)
Q Consensus 346 ~all~-----~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g 411 (537)
++++. .+ |+++++| |+|++.. ..++..+.+..+.+++++ +|+.......+ ++++++|+++..+
T Consensus 147 ~al~~~~~~~~~--p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~-sH~~~~~~~~~d~i~~l~~G~i~~~~ 223 (258)
T PRK13548 147 RVLAQLWEPDGP--PRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVV-LHDLNLAARYADRIVLLHQGRLVADG 223 (258)
T ss_pred HHHhcccccCCC--CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE-ECCHHHHHHhcCEEEEEECCEEEeeC
Confidence 99994 24 8999999 9999333 233344442334566666 88988776433 8899999998776
Q ss_pred cccch
Q psy16304 412 SAKNL 416 (537)
Q Consensus 412 ~nkdl 416 (537)
...++
T Consensus 224 ~~~~~ 228 (258)
T PRK13548 224 TPAEV 228 (258)
T ss_pred CHHHH
Confidence 65554
No 101
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=1.7e-21 Score=192.96 Aligned_cols=211 Identities=13% Similarity=0.115 Sum_probs=132.7
Q ss_pred hhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceee
Q psy16304 151 ILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF 230 (537)
Q Consensus 151 ~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~ 230 (537)
.++.++++.+.|+.... -..+++.+.+|++++|+|+||||||||+++|+|. ..|+.|
T Consensus 4 ~~l~~~~l~~~~~~~~~------------------l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~----~~p~~G- 60 (237)
T PRK11614 4 VMLSFDKVSAHYGKIQA------------------LHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGD----PRATSG- 60 (237)
T ss_pred cEEEEEeEEEeeCCcee------------------eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCC----CCCCCc-
Confidence 45677888887653222 2234677889999999999999999999999999 999999
Q ss_pred eeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCC
Q psy16304 231 NRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRS 310 (537)
Q Consensus 231 t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~ 310 (537)
++.++| ..+..++ .....+..+++++|+..++...+. .+ ++.................
T Consensus 61 ---~i~~~g-~~~~~~~------~~~~~~~~i~~~~q~~~~~~~~tv-----~~-------~l~~~~~~~~~~~~~~~~~ 118 (237)
T PRK11614 61 ---RIVFDG-KDITDWQ------TAKIMREAVAIVPEGRRVFSRMTV-----EE-------NLAMGGFFAERDQFQERIK 118 (237)
T ss_pred ---eEEECC-EecCCCC------HHHHHHhCEEEeccCcccCCCCcH-----HH-------HHHHhhhccChhHHHHHHH
Confidence 888887 4332111 111234678999998775543222 00 0000000000000000011
Q ss_pred ccEEEe-ccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH--H---HHHHHHHhcCCEE
Q psy16304 311 VPILVL-GLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--R---TIWKQYLGTVSQT 382 (537)
Q Consensus 311 ~~L~ll-Gl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~---~l~~~~~~~~~~v 382 (537)
..+..+ ++.... ...+.+|||||+||+ +++++++. + |+++++| |+|++.. . ..+..+.+. +.+
T Consensus 119 ~~l~~~~~l~~~~-~~~~~~LS~G~~qrl----~la~al~~-~--p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-~~t 189 (237)
T PRK11614 119 WVYELFPRLHERR-IQRAGTMSGGEQQML----AIGRALMS-Q--PRLLLLDEPSLGLAPIIIQQIFDTIEQLREQ-GMT 189 (237)
T ss_pred HHHHHHHHHHHHH-hCchhhCCHHHHHHH----HHHHHHHh-C--CCEEEEcCccccCCHHHHHHHHHHHHHHHHC-CCE
Confidence 111223 233222 234789999999999 99999996 5 8999999 9999332 2 223333333 456
Q ss_pred EEEEeCCCcchhhhhh--hhhhcCCcEEEEecccch
Q psy16304 383 LLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 383 IlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl 416 (537)
++++ +|+.......+ ++++++|+++..+..+++
T Consensus 190 iii~-sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 224 (237)
T PRK11614 190 IFLV-EQNANQALKLADRGYVLENGHVVLEDTGDAL 224 (237)
T ss_pred EEEE-eCcHHHHHhhCCEEEEEeCCEEEeeCCHHHH
Confidence 6666 88887665433 899999999988877666
No 102
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.81 E-value=2.6e-21 Score=188.60 Aligned_cols=184 Identities=18% Similarity=0.223 Sum_probs=117.2
Q ss_pred cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304 188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ 267 (537)
Q Consensus 188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q 267 (537)
++++.+.+|++++|+|+||||||||+++|+|. ..|+.| ++.++| .++..++. .. ...++..+++++|
T Consensus 20 ~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl----~~~~~G----~i~~~g-~~~~~~~~---~~-~~~~~~~i~~~~q 86 (214)
T TIGR02673 20 DVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGA----LTPSRG----QVRIAG-EDVNRLRG---RQ-LPLLRRRIGVVFQ 86 (214)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCc----eEEECC-EEcccCCH---HH-HHHHHhheEEEec
Confidence 45677889999999999999999999999999 899999 888887 44422111 01 1123467899999
Q ss_pred CCCCCCCccceeeEEeecCcccccCCcccccc--cCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccc
Q psy16304 268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTS--ATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN 345 (537)
Q Consensus 268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~--~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la 345 (537)
++.++...+. .+ ++...... .............+..+|+.... ...+.+|||||+||+ +++
T Consensus 87 ~~~~~~~~tv-----~~-------~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrl----~la 149 (214)
T TIGR02673 87 DFRLLPDRTV-----YE-------NVALPLEVRGKKEREIQRRVGAALRQVGLEHKA-DAFPEQLSGGEQQRV----AIA 149 (214)
T ss_pred ChhhccCCcH-----HH-------HHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhh-hCChhhCCHHHHHHH----HHH
Confidence 9775543222 00 00000000 00000001112234456665433 445789999999999 999
Q ss_pred cceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCc
Q psy16304 346 RARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNC 406 (537)
Q Consensus 346 ~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ 406 (537)
++++. + |++++|| |+|++.. ...++.+.+. +.+++++ +|+..+....+ ++++++|+
T Consensus 150 ~al~~-~--p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~~-tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 150 RAIVN-S--PPLLLADEPTGNLDPDLSERILDLLKRLNKR-GTTVIVA-THDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHhC-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHHc-CCEEEEE-eCCHHHHHHhcCEEEEecCCC
Confidence 99996 5 8999999 9999433 2223343333 4566666 88888776543 77777664
No 103
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.81 E-value=2.8e-21 Score=194.81 Aligned_cols=199 Identities=18% Similarity=0.186 Sum_probs=128.8
Q ss_pred cccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcc
Q psy16304 186 PTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTV 265 (537)
Q Consensus 186 ~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v 265 (537)
..++++.+.+|++++|+|+||||||||+++|+|. +.|++| +|.++| ..+..++. .. ...++..++++
T Consensus 27 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~p~~G----~i~~~g-~~i~~~~~---~~-~~~~~~~i~~v 93 (265)
T TIGR02769 27 LTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGL----EKPAQG----TVSFRG-QDLYQLDR---KQ-RRAFRRDVQLV 93 (265)
T ss_pred eeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCc----EEEECC-EEccccCH---HH-HHHHhhceEEE
Confidence 3456788889999999999999999999999999 999999 999887 44322111 11 11234679999
Q ss_pred ccCCC--CCCCccceeeEEeecCcccccCCcccccccCcCC---ccccCCccEEEeccCccCccchhhhhcCCCceeeec
Q psy16304 266 SQTPL--GRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVP 340 (537)
Q Consensus 266 ~Q~~~--l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ 340 (537)
+|++. +.+..+. .+ ++...+.....+. ...+....+..+|+........+..|||||+||+
T Consensus 94 ~q~~~~~~~~~~tv-----~~-------~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv-- 159 (265)
T TIGR02769 94 FQDSPSAVNPRMTV-----RQ-------IIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRI-- 159 (265)
T ss_pred ecChhhhcCCCCCH-----HH-------HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHH--
Confidence 99863 2221111 00 0000000000000 0111222344566642222445889999999999
Q ss_pred ccccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEe
Q psy16304 341 TVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLI 411 (537)
Q Consensus 341 ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g 411 (537)
+++++++. + |+++++| |++++.. ...+..+.+..+.+++++ +|+....... + ++++++|+++..+
T Consensus 160 --~laral~~-~--p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiiv-sH~~~~~~~~~d~i~~l~~G~i~~~g 233 (265)
T TIGR02769 160 --NIARALAV-K--PKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFI-THDLRLVQSFCQRVAVMDKGQIVEEC 233 (265)
T ss_pred --HHHHHHhc-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEE-eCCHHHHHHHhcEEEEEeCCEEEEEC
Confidence 99999997 5 8999999 9999432 333344444334567777 8998877643 3 8889999999888
Q ss_pred cccchh
Q psy16304 412 SAKNLS 417 (537)
Q Consensus 412 ~nkdl~ 417 (537)
..+++.
T Consensus 234 ~~~~~~ 239 (265)
T TIGR02769 234 DVAQLL 239 (265)
T ss_pred CHHHHc
Confidence 777663
No 104
>KOG0055|consensus
Probab=99.81 E-value=4.9e-21 Score=219.19 Aligned_cols=265 Identities=14% Similarity=0.089 Sum_probs=183.5
Q ss_pred hHHHHHhhhcccccccccccccccCccccccccCCCCCCchhHHHHHHHHHHHHhhhcccccCCCcccCCCCCCCCCcch
Q psy16304 96 IWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAPTFEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDDPAPTF 175 (537)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~~~~~~~~ 175 (537)
.+.+.......-.+..+..+..+++.+++.++.++.+. +-.+ ..... .--+.++++...|+++. .
T Consensus 938 a~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~~~i~~~~-~~~~-----~~~~~-~G~I~~~~V~F~YPsRP-----~--- 1002 (1228)
T KOG0055|consen 938 AMALGQASSYAPDISKAKIAAGSIFEILDRKPTIDPDS-TSGG-----KLPNV-KGDIEFRNVSFAYPTRP-----D--- 1002 (1228)
T ss_pred HHHHHHHHhhCcHHHHHHHHHHHHHHHhcCCCCCCCCC-CCCC-----ccccc-eeEEEEeeeEeeCCCCC-----C---
Confidence 34556666667777788888889999999777554332 2221 00001 22466777887776542 2
Q ss_pred hhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhh
Q psy16304 176 ENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFR 255 (537)
Q Consensus 176 ~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r 255 (537)
+.+-+++++.+.+|+.++||||+|+||||.+.+|-+. |.|+.| .|.+|| .++..+++
T Consensus 1003 -------~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRf----Ydp~~G----~V~IDg-~dik~lnl------- 1059 (1228)
T KOG0055|consen 1003 -------VPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERF----YDPDAG----KVKIDG-VDIKDLNL------- 1059 (1228)
T ss_pred -------chhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHh----cCCCCC----eEEECC-cccccCCH-------
Confidence 2234566788889999999999999999999999999 999999 999997 77777766
Q ss_pred HHHHhhhhccccCCCCCCC-ccceeeEEee-cCcccccCC---cccccccCcCCccccCCccEEEeccCccCccchhhhh
Q psy16304 256 TIWKQYLGTVSQTPLGRPD-SRTCQVYLIM-CGVHQVSGI---PDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRI 330 (537)
Q Consensus 256 ~~~~~~i~~v~Q~~~l~~~-~~~~il~v~D-s~~~~~~~l---~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~L 330 (537)
..+++.++.|.|+|.||.. ..+++.+..+ .+.++..+. ....+++..++...+. .+|..+ .+|
T Consensus 1060 ~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT-----~vGerG-------~QL 1127 (1228)
T KOG0055|consen 1060 KWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDT-----RVGERG-------VQL 1127 (1228)
T ss_pred HHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccC-----ccCccc-------CcC
Confidence 3344899999999999876 5555555522 122111111 1111223333332222 344333 359
Q ss_pred cCCCceeeecccccccceeccCCceEEEEEe--cCchhhHHHHH--HHHHhcC-CEEEEEEeCCCcchhhhhh-hhhhcC
Q psy16304 331 LGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRTIW--KQYLGTV-SQTLLVSHSLSGRPDDRCQ-VYLMSC 404 (537)
Q Consensus 331 SgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~l~--~~~~~~~-~~vIlVvdshd~~~~~~~~-i~ll~~ 404 (537)
||||+||+ ++|||++. + |++|+|| |+.++...+.. +.+-+.. +-+.+|+ .|...+...++ +.++++
T Consensus 1128 SGGQKQRI----AIARAilR-n--PkILLLDEATSALDseSErvVQeALd~a~~gRT~IvI-AHRLSTIqnaD~I~Vi~~ 1199 (1228)
T KOG0055|consen 1128 SGGQKQRI----AIARAILR-N--PKILLLDEATSALDSESERVVQEALDRAMEGRTTIVI-AHRLSTIQNADVIAVLKN 1199 (1228)
T ss_pred CchHHHHH----HHHHHHHc-C--CCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEE-ecchhhhhcCCEEEEEEC
Confidence 99999999 99999995 4 9999999 99996555433 3333322 3467777 89999998888 999999
Q ss_pred CcEEEEecccchhh
Q psy16304 405 NCQVYLISAKNLSN 418 (537)
Q Consensus 405 G~ii~~g~nkdl~~ 418 (537)
|+++..|++.+|.+
T Consensus 1200 G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1200 GKVVEQGTHDELLA 1213 (1228)
T ss_pred CEEEecccHHHHHh
Confidence 99999999999865
No 105
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.81 E-value=1e-20 Score=179.06 Aligned_cols=191 Identities=15% Similarity=0.125 Sum_probs=127.9
Q ss_pred cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304 188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ 267 (537)
Q Consensus 188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q 267 (537)
.++++..+||..+|+||||||||||++.|+|. ..|++| ++.++| ..+..|.- .+ ..+..+.++|
T Consensus 19 ~vsl~~~pGev~ailGPNGAGKSTlLk~LsGe----l~p~~G----~v~~~g-~~l~~~~~---~~----lA~~raVlpQ 82 (259)
T COG4559 19 GVSLDLRPGEVLAILGPNGAGKSTLLKALSGE----LSPDSG----EVTLNG-VPLNSWPP---EE----LARHRAVLPQ 82 (259)
T ss_pred CcceeccCCcEEEEECCCCccHHHHHHHhhCc----cCCCCC----eEeeCC-cChhhCCH---HH----HHHHhhhccc
Confidence 45677889999999999999999999999999 999999 999887 55555543 12 2255678888
Q ss_pred CCCCCCCccceeeEEeecCcccccCCcccccccCcCCc---------cccCCccEEEeccCccCccchhhhhcCCCceee
Q psy16304 268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPL---------VDFRSVPILVLGLDNAGKSSIIKRILGEPIISL 338 (537)
Q Consensus 268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~---------~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrv 338 (537)
+..+....+. .+ .. .++.... ..-....+...++.+.. .+...+||||++||+
T Consensus 83 ~s~laFpFtv-----~e-----------VV-~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la-~R~y~~LSGGEqQRV 144 (259)
T COG4559 83 NSSLAFPFTV-----QE-----------VV-QMGRIPHRSGREPEEDERIAAQALAATDLSGLA-GRDYRTLSGGEQQRV 144 (259)
T ss_pred CcccccceEH-----HH-----------HH-HhcccccccCCCchhhHHHHHHHHHHcChhhhh-ccchhhcCchHHHHH
Confidence 8663211111 00 00 0111100 00011223344444443 333788999999999
Q ss_pred ecccccccceeccCC---ceEEEEEe--cCchh-----hHHHHHHHHHhcCCEEEEEEeCCCcchhhhhhhhhhcCCcEE
Q psy16304 339 VPTVGFNRARVEYGN---KYEVFLYD--LGGSE-----DFRTIWKQYLGTVSQTLLVSHSLSGRPDDRCQVYLMSCNCQV 408 (537)
Q Consensus 339 s~ti~la~all~~~e---~p~lllLD--T~Gl~-----~~~~l~~~~~~~~~~vIlVvdshd~~~~~~~~i~ll~~G~ii 408 (537)
.+++.+.+.-. .+..++|| |+.++ ......+++.+++.+++.|.|+.+.....+.++++|.+|+++
T Consensus 145 ----qlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~ 220 (259)
T COG4559 145 ----QLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVI 220 (259)
T ss_pred ----HHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEe
Confidence 98888876443 24589999 77773 334445788888766666665555555556669999999999
Q ss_pred EEecccch
Q psy16304 409 YLISAKNL 416 (537)
Q Consensus 409 ~~g~nkdl 416 (537)
+.|++++.
T Consensus 221 a~g~p~~v 228 (259)
T COG4559 221 ASGSPQDV 228 (259)
T ss_pred ecCCHHHh
Confidence 99999986
No 106
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=3.9e-21 Score=196.04 Aligned_cols=196 Identities=14% Similarity=0.130 Sum_probs=127.6
Q ss_pred cccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcc
Q psy16304 186 PTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTV 265 (537)
Q Consensus 186 ~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v 265 (537)
...+++.+.+|+++||+|+||||||||+++|+|. ..|+.| +|.++| ..+.... ... ...+..++++
T Consensus 23 l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl----~~p~~G----~i~~~g-~~~~~~~----~~~-~~~~~~ig~v 88 (287)
T PRK13637 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGL----LKPTSG----KIIIDG-VDITDKK----VKL-SDIRKKVGLV 88 (287)
T ss_pred eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC----CCCCcc----EEEECC-EECCCcC----ccH-HHHhhceEEE
Confidence 3456678889999999999999999999999999 999999 999887 4432110 001 1233679999
Q ss_pred ccCCCCC-CCccceeeEEeecCcccccCCcccccc--cCcCCccccCCccEEEeccC--ccCccchhhhhcCCCceeeec
Q psy16304 266 SQTPLGR-PDSRTCQVYLIMCGVHQVSGIPDELTS--ATHLPLVDFRSVPILVLGLD--NAGKSSIIKRILGEPIISLVP 340 (537)
Q Consensus 266 ~Q~~~l~-~~~~~~il~v~Ds~~~~~~~l~~~l~~--~~~l~~~~~~~~~L~llGl~--~~gKs~li~~LSgG~rqrvs~ 340 (537)
||++... ...+. .+ ++...... +.......+....+..+|+. .. ....+.+|||||+||+
T Consensus 89 ~q~~~~~~~~~tv-----~e-------~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-~~~~~~~LSgGq~qrv-- 153 (287)
T PRK13637 89 FQYPEYQLFEETI-----EK-------DIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDY-KDKSPFELSGGQKRRV-- 153 (287)
T ss_pred ecCchhccccccH-----HH-------HHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhh-ccCCcccCCHHHHHHH--
Confidence 9986311 11111 01 00000000 00000011223345567775 32 3455899999999999
Q ss_pred ccccccceeccCCceEEEEEe--cCchhhH--HHH---HHHHHhcCCEEEEEEeCCCcchhhh-hh-hhhhcCCcEEEEe
Q psy16304 341 TVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTI---WKQYLGTVSQTLLVSHSLSGRPDDR-CQ-VYLMSCNCQVYLI 411 (537)
Q Consensus 341 ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l---~~~~~~~~~~vIlVvdshd~~~~~~-~~-i~ll~~G~ii~~g 411 (537)
+++++++. + |+++++| |+|++.. ..+ +..+.++.+.+++++ +|+...... ++ ++++++|+++..+
T Consensus 154 --~iAraL~~-~--P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~v-tHd~~~~~~~~drv~~l~~G~i~~~g 227 (287)
T PRK13637 154 --AIAGVVAM-E--PKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILV-SHSMEDVAKLADRIIVMNKGKCELQG 227 (287)
T ss_pred --HHHHHHHc-C--CCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 99999996 5 8999999 9999332 222 334434334566776 888887654 33 8999999999988
Q ss_pred cccch
Q psy16304 412 SAKNL 416 (537)
Q Consensus 412 ~nkdl 416 (537)
.+.++
T Consensus 228 ~~~~~ 232 (287)
T PRK13637 228 TPREV 232 (287)
T ss_pred CHHHH
Confidence 87765
No 107
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=3.7e-21 Score=191.03 Aligned_cols=210 Identities=13% Similarity=0.116 Sum_probs=135.0
Q ss_pred hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304 152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN 231 (537)
Q Consensus 152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t 231 (537)
++.++++.+.|++... ..++++.+.+|++++|+|+||||||||+++|+|. ..|+.|
T Consensus 3 ~l~~~~l~~~~~~~~~------------------l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~----~~~~~G-- 58 (241)
T PRK10895 3 TLTAKNLAKAYKGRRV------------------VEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGI----VPRDAG-- 58 (241)
T ss_pred eEEEeCcEEEeCCEEE------------------EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC----CCCCCc--
Confidence 4667788877653221 2345677889999999999999999999999999 999999
Q ss_pred eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC---cccc
Q psy16304 232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDF 308 (537)
Q Consensus 232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~ 308 (537)
++.++| ..+.. .. .....+..+++++|++.++...+.. + ++........... ....
T Consensus 59 --~i~~~g-~~~~~-----~~-~~~~~~~~i~~~~q~~~~~~~~tv~-----e-------nl~~~~~~~~~~~~~~~~~~ 117 (241)
T PRK10895 59 --NIIIDD-EDISL-----LP-LHARARRGIGYLPQEASIFRRLSVY-----D-------NLMAVLQIRDDLSAEQREDR 117 (241)
T ss_pred --EEEECC-EECCC-----CC-HHHHHHhCeEEeccCCcccccCcHH-----H-------HHhhhhhcccccCHHHHHHH
Confidence 888887 43321 11 1122346799999998755432220 0 0000000000000 0011
Q ss_pred CCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH--HHHH---HHHHhcCCE
Q psy16304 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIW---KQYLGTVSQ 381 (537)
Q Consensus 309 ~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l~---~~~~~~~~~ 381 (537)
....+..+|+.... ...+.+|||||+||+ +++++++. + |+++++| |+|++.. ..++ ..+.+ .+.
T Consensus 118 ~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv----~laral~~-~--p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~ 188 (241)
T PRK10895 118 ANELMEEFHIEHLR-DSMGQSLSGGERRRV----EIARALAA-N--PKFILLDEPFAGVDPISVIDIKRIIEHLRD-SGL 188 (241)
T ss_pred HHHHHHHcCCHHHh-hcchhhCCHHHHHHH----HHHHHHhc-C--CCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCC
Confidence 22234455665543 344889999999999 99999996 5 8999999 9999432 2222 33333 244
Q ss_pred EEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccch
Q psy16304 382 TLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 382 vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl 416 (537)
+++++ +|+.......+ ++++++|+++..+.++++
T Consensus 189 tiii~-sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 224 (241)
T PRK10895 189 GVLIT-DHNVRETLAVCERAYIVSQGHLIAHGTPTEI 224 (241)
T ss_pred EEEEE-EcCHHHHHHhcCEEEEEeCCeEEeeCCHHHH
Confidence 66666 78887665543 888999999887766655
No 108
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.81 E-value=3.1e-21 Score=187.89 Aligned_cols=185 Identities=18% Similarity=0.123 Sum_probs=120.2
Q ss_pred ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304 187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS 266 (537)
Q Consensus 187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~ 266 (537)
.++++.+.+|++++|+|+||||||||+++|+|. +.|++| ++.++| .++...+ .. +..+++++
T Consensus 17 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~----~~~~~G----~v~~~g-~~~~~~~-----~~----~~~i~~~~ 78 (213)
T cd03301 17 DDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGL----EEPTSG----RIYIGG-RDVTDLP-----PK----DRDIAMVF 78 (213)
T ss_pred eceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC----CCCCce----EEEECC-EECCcCC-----cc----cceEEEEe
Confidence 345677889999999999999999999999999 999999 898887 4432111 11 14689999
Q ss_pred cCCCCCCCccceeeEEeecCcccccCCcccccc--cCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccccc
Q psy16304 267 QTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTS--ATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF 344 (537)
Q Consensus 267 Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~--~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~l 344 (537)
|++.++...+.. + ++...... .............+..+|+.... ...+.+|||||+||+ ++
T Consensus 79 q~~~~~~~~tv~-----~-------~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qr~----~l 141 (213)
T cd03301 79 QNYALYPHMTVY-----D-------NIAFGLKLRKVPKDEIDERVREVAELLQIEHLL-DRKPKQLSGGQRQRV----AL 141 (213)
T ss_pred cChhhccCCCHH-----H-------HHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHH-hCChhhCCHHHHHHH----HH
Confidence 987655332220 0 00000000 00000001112233456665443 445889999999999 99
Q ss_pred ccceeccCCceEEEEEe--cCchhhHH-----HHHHHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEE
Q psy16304 345 NRARVEYGNKYEVFLYD--LGGSEDFR-----TIWKQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYL 410 (537)
Q Consensus 345 a~all~~~e~p~lllLD--T~Gl~~~~-----~l~~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~ 410 (537)
+++++. + |+++++| |+|++... ..+..+.++...+++++ +|+....... + ++++++|+++..
T Consensus 142 aral~~-~--p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~-sH~~~~~~~~~d~i~~l~~g~~~~~ 212 (213)
T cd03301 142 GRAIVR-E--PKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYV-THDQVEAMTMADRIAVMNDGQIQQI 212 (213)
T ss_pred HHHHhc-C--CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEE-eCCHHHHHHhcCeEEEEECCEEEec
Confidence 999996 5 8999999 99993332 22334333334567777 8888776653 3 888899988764
No 109
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=2.6e-21 Score=193.65 Aligned_cols=224 Identities=12% Similarity=0.043 Sum_probs=136.8
Q ss_pred hhhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304 150 GILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG 229 (537)
Q Consensus 150 ~~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G 229 (537)
+.++.++++.+.|+.... -..+++.+.+|++++|+|+||||||||+++|+|. ..|++|
T Consensus 3 ~~~l~~~~l~~~~~~~~~------------------l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl----~~~~~G 60 (255)
T PRK11300 3 QPLLSVSGLMMRFGGLLA------------------VNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGF----YKPTGG 60 (255)
T ss_pred CceEEEeeEEEEECCEEE------------------EEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCC----cCCCcc
Confidence 345677888887653221 2345677889999999999999999999999999 999999
Q ss_pred eeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccce--eeEEee--cCcccccCCcccccccCcC--
Q psy16304 230 FNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTC--QVYLIM--CGVHQVSGIPDELTSATHL-- 303 (537)
Q Consensus 230 ~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~--il~v~D--s~~~~~~~l~~~l~~~~~l-- 303 (537)
+|.++| ..+...+ .....+..+++++|++.++...+.. +.+... ...+........ ......
T Consensus 61 ----~i~~~g-~~~~~~~------~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 128 (255)
T PRK11300 61 ----TILLRG-QHIEGLP------GHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKT-PAFRRAES 128 (255)
T ss_pred ----eEEECC-EECCCCC------HHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccc-cccccchh
Confidence 899887 4332111 1111224578889998766543321 100000 000000000000 000000
Q ss_pred CccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH--HHHHH---HHH
Q psy16304 304 PLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIWK---QYL 376 (537)
Q Consensus 304 ~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l~~---~~~ 376 (537)
.........+..+|+.... ...+.+|||||+||+ +++++++. + |+++++| |+|++.. ..+++ .+.
T Consensus 129 ~~~~~~~~~l~~~gl~~~~-~~~~~~LS~G~~qrv----~la~al~~-~--p~llllDEPt~~LD~~~~~~l~~~L~~~~ 200 (255)
T PRK11300 129 EALDRAATWLERVGLLEHA-NRQAGNLAYGQQRRL----EIARCMVT-Q--PEILMLDEPAAGLNPKETKELDELIAELR 200 (255)
T ss_pred HHHHHHHHHHHhCChhhhh-hCChhhCCHHHHHHH----HHHHHHhc-C--CCEEEEcCCccCCCHHHHHHHHHHHHHHH
Confidence 0001112223456765543 445889999999999 99999997 5 8999999 9999322 23333 332
Q ss_pred hcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEecccch
Q psy16304 377 GTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 377 ~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~nkdl 416 (537)
++.+.+++++ +|+....... + ++++++|+++..+..+++
T Consensus 201 ~~~~~tii~~-sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 241 (255)
T PRK11300 201 NEHNVTVLLI-EHDMKLVMGISDRIYVVNQGTPLANGTPEEI 241 (255)
T ss_pred hhcCCEEEEE-eCCHHHHHHhCCEEEEEECCeEEecCCHHHH
Confidence 3324566777 8888887553 3 889999999877766554
No 110
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=1.9e-21 Score=197.51 Aligned_cols=214 Identities=13% Similarity=0.122 Sum_probs=137.6
Q ss_pred hhhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304 150 GILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG 229 (537)
Q Consensus 150 ~~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G 229 (537)
+.++.++++.+.|+... ..+-.++++.+.+|++++|+|+||||||||+++|+|. ..|+.|
T Consensus 3 ~~~l~~~~l~~~~~~~~----------------~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~----~~p~~G 62 (279)
T PRK13635 3 EEIIRVEHISFRYPDAA----------------TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGL----LLPEAG 62 (279)
T ss_pred CceEEEEEEEEEeCCCC----------------ccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC----CCCCCc
Confidence 44677888888775311 0012345677889999999999999999999999999 999999
Q ss_pred eeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCC-CCCCccceeeEEeecCcccccCCcccccc--cCcCCcc
Q psy16304 230 FNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL-GRPDSRTCQVYLIMCGVHQVSGIPDELTS--ATHLPLV 306 (537)
Q Consensus 230 ~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~-l~~~~~~~il~v~Ds~~~~~~~l~~~l~~--~~~l~~~ 306 (537)
+|.++| ..+... .. ......+++++|++. .+...+. .+ ++...... .......
T Consensus 63 ----~i~~~g-~~i~~~------~~-~~~~~~i~~~~q~~~~~~~~~tv-----~e-------nl~~~~~~~~~~~~~~~ 118 (279)
T PRK13635 63 ----TITVGG-MVLSEE------TV-WDVRRQVGMVFQNPDNQFVGATV-----QD-------DVAFGLENIGVPREEMV 118 (279)
T ss_pred ----EEEECC-EECCcC------cH-HHHhhheEEEEeCHHHhcccccH-----HH-------HHhhhHhhCCCCHHHHH
Confidence 999987 443211 11 112367999999863 2222111 00 00000000 0000000
Q ss_pred ccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH--HHHHH---HHHhcC
Q psy16304 307 DFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIWK---QYLGTV 379 (537)
Q Consensus 307 ~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l~~---~~~~~~ 379 (537)
.+....+..+|+.... ...+..|||||+||+ +++++++. + |+++++| |+|++.. ..+++ .+.+..
T Consensus 119 ~~~~~~l~~~gL~~~~-~~~~~~LS~G~~qrv----~laral~~-~--p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~ 190 (279)
T PRK13635 119 ERVDQALRQVGMEDFL-NREPHRLSGGQKQRV----AIAGVLAL-Q--PDIIILDEATSMLDPRGRREVLETVRQLKEQK 190 (279)
T ss_pred HHHHHHHHHcCChhhh-hCCcccCCHHHHHHH----HHHHHHHc-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHHcC
Confidence 1123334456776543 455889999999999 99999997 5 8999999 9999332 22333 333333
Q ss_pred CEEEEEEeCCCcchhhhhh-hhhhcCCcEEEEecccch
Q psy16304 380 SQTLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 380 ~~vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g~nkdl 416 (537)
+.+++++ +|+......++ ++++++|+++..+...++
T Consensus 191 ~~tiliv-sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (279)
T PRK13635 191 GITVLSI-THDLDEAAQADRVIVMNKGEILEEGTPEEI 227 (279)
T ss_pred CCEEEEE-ecCHHHHHcCCEEEEEECCEEEEECCHHHH
Confidence 4566666 78877766544 889999999888776655
No 111
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=4.2e-21 Score=194.83 Aligned_cols=210 Identities=17% Similarity=0.166 Sum_probs=135.1
Q ss_pred hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304 152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN 231 (537)
Q Consensus 152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t 231 (537)
++.++++.+.|+... .+-.+++|.+.+|++++|+|+||||||||+++|+|. ..|++|
T Consensus 3 ~l~~~~l~~~~~~~~-----------------~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl----~~p~~G-- 59 (277)
T PRK13652 3 LIETRDLCYSYSGSK-----------------EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGI----LKPTSG-- 59 (277)
T ss_pred eEEEEEEEEEeCCCC-----------------ceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC----CCCCce--
Confidence 456778888764221 012345677889999999999999999999999999 999999
Q ss_pred eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCC-CCCccceeeEEeecCcccccCCcccccccCcCCc---cc
Q psy16304 232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG-RPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPL---VD 307 (537)
Q Consensus 232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l-~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~---~~ 307 (537)
++.++| ..+... .. ......+++++|++.. +...+. .+ ++..... ...... ..
T Consensus 60 --~i~~~g-~~~~~~---~~----~~~~~~i~~v~q~~~~~~~~~tv-----~~-------~l~~~~~-~~~~~~~~~~~ 116 (277)
T PRK13652 60 --SVLIRG-EPITKE---NI----REVRKFVGLVFQNPDDQIFSPTV-----EQ-------DIAFGPI-NLGLDEETVAH 116 (277)
T ss_pred --EEEECC-EECCcC---CH----HHHHhheEEEecCcccccccccH-----HH-------HHHhHHH-HcCCCHHHHHH
Confidence 899887 433211 11 1233678999998631 111111 00 0000000 000000 01
Q ss_pred cCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH--H---HHHHHHHhcCC
Q psy16304 308 FRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--R---TIWKQYLGTVS 380 (537)
Q Consensus 308 ~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~---~l~~~~~~~~~ 380 (537)
.....+..+|+.... ...+..|||||+||+ +++++++. + |+++++| |+|++.. . .++..+.++.+
T Consensus 117 ~~~~~l~~~~l~~~~-~~~~~~LS~Gq~qrl----~laraL~~-~--p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g 188 (277)
T PRK13652 117 RVSSALHMLGLEELR-DRVPHHLSGGEKKRV----AIAGVIAM-E--PQVLVLDEPTAGLDPQGVKELIDFLNDLPETYG 188 (277)
T ss_pred HHHHHHHHCCChhHh-cCCcccCCHHHHHHH----HHHHHHHc-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 122334456765443 445889999999999 99999997 5 8999999 9999322 2 23334434334
Q ss_pred EEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEecccch
Q psy16304 381 QTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 381 ~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~nkdl 416 (537)
.+++++ +|+....... + ++++++|+++..+..+++
T Consensus 189 ~tvli~-tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~ 225 (277)
T PRK13652 189 MTVIFS-THQLDLVPEMADYIYVMDKGRIVAYGTVEEI 225 (277)
T ss_pred CEEEEE-ecCHHHHHHhCCEEEEEECCeEEEECCHHHH
Confidence 566776 8998877543 3 899999999988877666
No 112
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.81 E-value=7.7e-21 Score=199.19 Aligned_cols=193 Identities=17% Similarity=0.108 Sum_probs=130.7
Q ss_pred cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304 188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ 267 (537)
Q Consensus 188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q 267 (537)
++++.+.+|++++|+||||||||||+++|+|. ..|++| ++.++| ..+...+. ... ....++.++++||
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl----~~p~~G----~I~~~g-~~~~~~~~--~~~-~~~~~~~i~~v~q 83 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGL----TRPQKG----RIVLNG-RVLFDAEK--GIC-LPPEKRRIGYVFQ 83 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCce----EEEECC-EEcccccc--ccc-cchhhCCEEEEcC
Confidence 35677889999999999999999999999999 999999 898887 44321100 000 1122367999999
Q ss_pred CCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccc
Q psy16304 268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA 347 (537)
Q Consensus 268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~a 347 (537)
++.+++.++.. +++...+ .. ....+....+..+|+.... ...+.+|||||+||+ +++++
T Consensus 84 ~~~l~~~~tv~------------enl~~~~---~~-~~~~~~~~~l~~~gl~~~~-~~~~~~LSgGq~qRv----alara 142 (352)
T PRK11144 84 DARLFPHYKVR------------GNLRYGM---AK-SMVAQFDKIVALLGIEPLL-DRYPGSLSGGEKQRV----AIGRA 142 (352)
T ss_pred CcccCCCCcHH------------HHHHhhh---hh-hhHHHHHHHHHHcCCchhh-hCCcccCCHHHHHHH----HHHHH
Confidence 98877654331 0110000 00 0011122334456776543 445899999999999 99999
Q ss_pred eeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchh
Q psy16304 348 RVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLS 417 (537)
Q Consensus 348 ll~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~ 417 (537)
++. + |++++|| |++++.. ...+..+.++.+.+++++ +||..+....+ +++|++|+++..+.+.++.
T Consensus 143 L~~-~--p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~v-THd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~ 217 (352)
T PRK11144 143 LLT-A--PELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYV-SHSLDEILRLADRVVVLEQGKVKAFGPLEEVW 217 (352)
T ss_pred HHc-C--CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEE-ecCHHHHHHhCCEEEEEeCCEEEEecCHHHHH
Confidence 996 5 8999999 9999332 223344444434566777 89988776543 8999999999998887764
No 113
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.81 E-value=5.2e-21 Score=187.19 Aligned_cols=188 Identities=21% Similarity=0.227 Sum_probs=123.5
Q ss_pred ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304 187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS 266 (537)
Q Consensus 187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~ 266 (537)
.++++.+.+|++++|+|+||||||||+++|+|. ..|++| ++.++| ..+... ...+...+++++
T Consensus 19 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~~~~G----~i~~~g-~~~~~~--------~~~~~~~i~~v~ 81 (220)
T cd03263 19 DDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGE----LRPTSG----TAYING-YSIRTD--------RKAARQSLGYCP 81 (220)
T ss_pred cceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC----CCCCCc----EEEECC-Eecccc--------hHHHhhhEEEec
Confidence 345677889999999999999999999999999 999999 898887 443211 122235689999
Q ss_pred cCCCCCCCccceeeEEeecCcccccCCcccccccCcCC---ccccCCccEEEeccCccCccchhhhhcCCCceeeecccc
Q psy16304 267 QTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG 343 (537)
Q Consensus 267 Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~ 343 (537)
|++.++...+. .+ ++.... ...... ...+....+..+|+.... ...+.+||+||+||+ +
T Consensus 82 q~~~~~~~~tv-----~~-------~l~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv----~ 143 (220)
T cd03263 82 QFDALFDELTV-----RE-------HLRFYA-RLKGLPKSEIKEEVELLLRVLGLTDKA-NKRARTLSGGMKRKL----S 143 (220)
T ss_pred CcCCccccCCH-----HH-------HHHHHH-HHcCCCHHHHHHHHHHHHHHcCCHHHH-hChhhhCCHHHHHHH----H
Confidence 98775543222 00 000000 000000 001112233356665433 344889999999999 9
Q ss_pred cccceeccCCceEEEEEe--cCchhhHH--HH---HHHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEeccc
Q psy16304 344 FNRARVEYGNKYEVFLYD--LGGSEDFR--TI---WKQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLISAK 414 (537)
Q Consensus 344 la~all~~~e~p~lllLD--T~Gl~~~~--~l---~~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~nk 414 (537)
++++++. + |+++++| |+|++... .+ +..+. . +.+++++ +|+....... + ++++++|+++..+.++
T Consensus 144 la~al~~-~--p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~-sH~~~~~~~~~d~i~~l~~g~i~~~~~~~ 217 (220)
T cd03263 144 LAIALIG-G--PSVLLLDEPTSGLDPASRRAIWDLILEVR-K-GRSIILT-THSMDEAEALCDRIAIMSDGKLRCIGSPQ 217 (220)
T ss_pred HHHHHhc-C--CCEEEECCCCCCCCHHHHHHHHHHHHHHh-c-CCEEEEE-cCCHHHHHHhcCEEEEEECCEEEecCCHH
Confidence 9999996 5 8999999 99994332 22 23332 2 3566676 8998877653 3 8889999998776554
Q ss_pred c
Q psy16304 415 N 415 (537)
Q Consensus 415 d 415 (537)
+
T Consensus 218 ~ 218 (220)
T cd03263 218 E 218 (220)
T ss_pred H
Confidence 3
No 114
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=3.3e-21 Score=194.29 Aligned_cols=199 Identities=12% Similarity=0.049 Sum_probs=126.0
Q ss_pred ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304 187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS 266 (537)
Q Consensus 187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~ 266 (537)
.+++|.+.+|++++|+|+||||||||+++|+|. +.|+.| +|.++| .++..++ . ..++..+++++
T Consensus 28 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~~~~G----~i~~~g-~~~~~~~---~----~~~~~~i~~v~ 91 (265)
T PRK10575 28 HPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRH----QPPSEG----EILLDA-QPLESWS---S----KAFARKVAYLP 91 (265)
T ss_pred eeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCC----CCCCCC----EEEECC-EehhhCC---H----HHHhhheEEec
Confidence 345677889999999999999999999999999 999999 898887 4332111 1 11235689999
Q ss_pred cCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccccccc
Q psy16304 267 QTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNR 346 (537)
Q Consensus 267 Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~ 346 (537)
|++.++...+..-.+.+. .. .....+..... ....+....+..+|+.+.. ...+.+|||||+||+ ++++
T Consensus 92 q~~~~~~~~tv~e~l~~~----~~-~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~-~~~~~~LSgG~~qrv----~lar 160 (265)
T PRK10575 92 QQLPAAEGMTVRELVAIG----RY-PWHGALGRFGA-ADREKVEEAISLVGLKPLA-HRLVDSLSGGERQRA----WIAM 160 (265)
T ss_pred cCCCCCCCccHHHHHHhC----cc-cccccccCCCH-HHHHHHHHHHHHcCCHHHh-cCCcccCCHHHHHHH----HHHH
Confidence 986654432210000000 00 00000000000 0011122334456665433 445889999999999 9999
Q ss_pred ceeccCCceEEEEEe--cCchhhH--H---HHHHHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEecccch
Q psy16304 347 ARVEYGNKYEVFLYD--LGGSEDF--R---TIWKQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 347 all~~~e~p~lllLD--T~Gl~~~--~---~l~~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~nkdl 416 (537)
+++. + |++++|| |+|++.. . .++..+.+..+.+++++ +|+....... + ++++++|+++..+...++
T Consensus 161 al~~-~--p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~-sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~ 235 (265)
T PRK10575 161 LVAQ-D--SRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAV-LHDINMAARYCDYLVALRGGEMIAQGTPAEL 235 (265)
T ss_pred HHhc-C--CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhCCEEEEEECCeEEEecCHHHh
Confidence 9997 5 8999999 9999333 2 33344433334566776 8998877543 3 889999999877766554
No 115
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=4.9e-21 Score=186.17 Aligned_cols=181 Identities=15% Similarity=0.166 Sum_probs=119.6
Q ss_pred ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304 187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS 266 (537)
Q Consensus 187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~ 266 (537)
.++++.+.+|++++|+|+||||||||+++|+|. ..|++| +|.++| ..+. ..++..+++++
T Consensus 17 ~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~----~~~~~G----~i~~~g-~~~~-----------~~~~~~i~~~~ 76 (210)
T cd03269 17 DDISFSVEKGEIFGLLGPNGAGKTTTIRMILGI----ILPDSG----EVLFDG-KPLD-----------IAARNRIGYLP 76 (210)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC----CCCCce----EEEECC-Cchh-----------HHHHccEEEec
Confidence 345677889999999999999999999999999 899999 888887 3221 11235789999
Q ss_pred cCCCCCCCccceeeEEeecCcccccCCcccccccCcCC---ccccCCccEEEeccCccCccchhhhhcCCCceeeecccc
Q psy16304 267 QTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG 343 (537)
Q Consensus 267 Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~ 343 (537)
|++.++...+.. + ++..... ..... ........+..+|+.... ...+.+|||||+||+ +
T Consensus 77 q~~~~~~~~tv~-----e-------~l~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrl----~ 138 (210)
T cd03269 77 EERGLYPKMKVI-----D-------QLVYLAQ-LKGLKKEEARRRIDEWLERLELSEYA-NKRVEELSKGNQQKV----Q 138 (210)
T ss_pred cCCcCCcCCcHH-----H-------HHHHHHH-HcCCChHHHHHHHHHHHHHcCChHHH-hCcHhhCCHHHHHHH----H
Confidence 998755432220 0 0000000 00000 001122234456765443 344889999999999 9
Q ss_pred cccceeccCCceEEEEEe--cCchhhHH-----HHHHHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEE
Q psy16304 344 FNRARVEYGNKYEVFLYD--LGGSEDFR-----TIWKQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYL 410 (537)
Q Consensus 344 la~all~~~e~p~lllLD--T~Gl~~~~-----~l~~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~ 410 (537)
++++++. + |+++++| |+|++... ..++.+.++ +.+++++ +|+....... + ++++++|+++..
T Consensus 139 la~al~~-~--p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~-~~tii~~-sH~~~~~~~~~d~i~~l~~g~i~~~ 209 (210)
T cd03269 139 FIAAVIH-D--PELLILDEPFSGLDPVNVELLKDVIRELARA-GKTVILS-THQMELVEELCDRVLLLNKGRAVLY 209 (210)
T ss_pred HHHHHhc-C--CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEE-CCCHHHHHHhhhEEEEEeCCEEEec
Confidence 9999996 5 8999999 99994332 222333332 4567777 8998877653 3 888899987653
No 116
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.81 E-value=8.4e-21 Score=203.78 Aligned_cols=225 Identities=16% Similarity=0.115 Sum_probs=157.6
Q ss_pred hhhcccccCCCcccCCC-CCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCce
Q psy16304 150 GILMGIQNVPNFQTSSV-LSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTV 228 (537)
Q Consensus 150 ~~li~~~~l~k~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~ 228 (537)
+.+..++++.+.|+... +.... ...+.+.+++||.+.+|+++||||.+|||||||.++|+|. ..|+.
T Consensus 278 ~~ll~V~~l~k~y~~~~~~~~~~--------~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL----~~P~~ 345 (539)
T COG1123 278 EPLLSVRNLSKRYGSRKGLFVRE--------RGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGL----LPPSS 345 (539)
T ss_pred CceeEeeeeeeeecccccccccc--------ccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCC----CCCCC
Confidence 66788999999987643 11110 1125577889999999999999999999999999999999 99999
Q ss_pred eeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCC--CCccceeeEEeecCcccccCCcccccccCcCC--
Q psy16304 229 GFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR--PDSRTCQVYLIMCGVHQVSGIPDELTSATHLP-- 304 (537)
Q Consensus 229 G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~--~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~-- 304 (537)
| .+.++| .+ .+..+. +. ...+..+.++||++... +.++. ...+.+.+.......
T Consensus 346 G----~i~~~g-~~---~~~~~~-~~-~~~r~~~QmvFQdp~~SLnPr~tV------------~~~i~epL~~~~~~~~~ 403 (539)
T COG1123 346 G----SIIFDG-QD---LDLTGG-EL-RRLRRRIQMVFQDPYSSLNPRMTV------------GDILAEPLRIHGGGSGA 403 (539)
T ss_pred c----eEEEeC-cc---cccccc-hh-hhhhhheEEEEeCcccccCccccH------------HHHHHhHHhhhcccchH
Confidence 9 888887 33 222211 11 12336788899998732 22222 111222222111111
Q ss_pred -ccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCch-----hhHHHHHHHHH
Q psy16304 305 -LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGS-----EDFRTIWKQYL 376 (537)
Q Consensus 305 -~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl-----~~~~~l~~~~~ 376 (537)
...+....+..+|++..--.+++++|||||+||+ ++|+++.. + |+++++| |+.+ ....+++.++.
T Consensus 404 ~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRv----aIARALa~-~--P~lli~DEp~SaLDvsvqa~VlnLl~~lq 476 (539)
T COG1123 404 ERRARVAELLELVGLPPEFLDRYPHELSGGQRQRV----AIARALAL-E--PKLLILDEPVSALDVSVQAQVLNLLKDLQ 476 (539)
T ss_pred HHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHH----HHHHHHhc-C--CCEEEecCCccccCHHHHHHHHHHHHHHH
Confidence 1112334466788876445677999999999999 99999996 5 8999999 7777 34444556666
Q ss_pred hcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccch
Q psy16304 377 GTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 377 ~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl 416 (537)
++.+.+.+.+ +||+......+ +.+|+.|+++..|..+++
T Consensus 477 ~e~g~t~lfI-SHDl~vV~~i~drv~vm~~G~iVE~G~~~~v 517 (539)
T COG1123 477 EELGLTYLFI-SHDLAVVRYIADRVAVMYDGRIVEEGPTEKV 517 (539)
T ss_pred HHhCCEEEEE-eCCHHHHHhhCceEEEEECCeEEEeCCHHHH
Confidence 6777788888 89999998766 999999999999955555
No 117
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=5.3e-21 Score=194.98 Aligned_cols=197 Identities=17% Similarity=0.127 Sum_probs=127.5
Q ss_pred ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304 187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS 266 (537)
Q Consensus 187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~ 266 (537)
.++++.+.+|++++|+|+||||||||+++|+|. ..|+.| +|.++| ..+..... + .. ...++..++++|
T Consensus 24 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl----~~p~~G----~i~~~g-~~i~~~~~-~-~~-~~~~~~~ig~v~ 91 (286)
T PRK13646 24 HDVNTEFEQGKYYAIVGQTGSGKSTLIQNINAL----LKPTTG----TVTVDD-ITITHKTK-D-KY-IRPVRKRIGMVF 91 (286)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC----CCCCCc----EEEECC-EECccccc-c-ch-HHHHHhheEEEe
Confidence 345677889999999999999999999999999 999999 999887 44422110 0 01 122346799999
Q ss_pred cCCC--CCCCccceeeEEeecCcccccCCcccccc--cCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccc
Q psy16304 267 QTPL--GRPDSRTCQVYLIMCGVHQVSGIPDELTS--ATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTV 342 (537)
Q Consensus 267 Q~~~--l~~~~~~~il~v~Ds~~~~~~~l~~~l~~--~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti 342 (537)
|++. ++.. +. .+ ++...... .............+..+|+........+.+|||||+||+
T Consensus 92 q~~~~~l~~~-tv-----~e-------~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv---- 154 (286)
T PRK13646 92 QFPESQLFED-TV-----ER-------EIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKI---- 154 (286)
T ss_pred cChHhccchh-hH-----HH-------HHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHH----
Confidence 9863 2211 10 01 00000000 000000111223344677752222445899999999999
Q ss_pred ccccceeccCCceEEEEEe--cCchhhHH-----HHHHHHHhcCCEEEEEEeCCCcchhhh-hh-hhhhcCCcEEEEecc
Q psy16304 343 GFNRARVEYGNKYEVFLYD--LGGSEDFR-----TIWKQYLGTVSQTLLVSHSLSGRPDDR-CQ-VYLMSCNCQVYLISA 413 (537)
Q Consensus 343 ~la~all~~~e~p~lllLD--T~Gl~~~~-----~l~~~~~~~~~~vIlVvdshd~~~~~~-~~-i~ll~~G~ii~~g~n 413 (537)
+++++++. + |+++++| |+|++... .++..+.++.+.+++++ +|+.+.... ++ ++++++|+++..+..
T Consensus 155 ~laraL~~-~--p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~v-tH~~~~~~~~~dri~~l~~G~i~~~g~~ 230 (286)
T PRK13646 155 AIVSILAM-N--PDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILV-SHDMNEVARYADEVIVMKEGSIVSQTSP 230 (286)
T ss_pred HHHHHHHh-C--CCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEE-ecCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 99999996 5 8999999 99993332 23334333334577777 899887654 33 899999999988877
Q ss_pred cch
Q psy16304 414 KNL 416 (537)
Q Consensus 414 kdl 416 (537)
.++
T Consensus 231 ~~~ 233 (286)
T PRK13646 231 KEL 233 (286)
T ss_pred HHH
Confidence 665
No 118
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.80 E-value=7.5e-21 Score=199.45 Aligned_cols=197 Identities=16% Similarity=0.081 Sum_probs=130.4
Q ss_pred cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304 188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ 267 (537)
Q Consensus 188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q 267 (537)
++++.+.+|++++|+|+||||||||+++|+|. ..|++| ++.++| ..+..... +. . ....++.+++++|
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl----~~p~~G----~I~~~g-~~i~~~~~-~~-~-~~~~~~~i~~v~q 82 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGL----TRPDEG----EIVLNG-RTLFDSRK-GI-F-LPPEKRRIGYVFQ 82 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCC----CCCCce----EEEECC-EECccCcc-cc-c-cchhhCCeEEEec
Confidence 35677889999999999999999999999999 999999 999887 44321110 00 0 0122367999999
Q ss_pred CCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccc
Q psy16304 268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA 347 (537)
Q Consensus 268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~a 347 (537)
++.+++.++.. +++...+..........+....+..+|+.... ...+.+|||||+||+ +++++
T Consensus 83 ~~~l~~~~tv~------------enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-~~~~~~LSgGqkqRv----alAra 145 (354)
T TIGR02142 83 EARLFPHLSVR------------GNLRYGMKRARPSERRISFERVIELLGIGHLL-GRLPGRLSGGEKQRV----AIGRA 145 (354)
T ss_pred CCccCCCCcHH------------HHHHHHhhccChhHHHHHHHHHHHHcCChhHh-cCChhhCCHHHHHHH----HHHHH
Confidence 98876553331 01100000000000011122334466776543 455899999999999 99999
Q ss_pred eeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchh
Q psy16304 348 RVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLS 417 (537)
Q Consensus 348 ll~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~ 417 (537)
++. + |++++|| |+|++.. ...+..+.++.+.+++++ +|+.......+ +++|++|+++..+.+.++.
T Consensus 146 L~~-~--p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiiv-tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 220 (354)
T TIGR02142 146 LLS-S--PRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYV-SHSLQEVLRLADRVVVLEDGRVAAAGPIAEVW 220 (354)
T ss_pred HHc-C--CCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEE-ecCHHHHHHhCCEEEEEeCCEEEEECCHHHHh
Confidence 996 5 8999999 9999332 223344444434566666 89988776533 8999999999888777663
No 119
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=3.2e-21 Score=188.85 Aligned_cols=183 Identities=17% Similarity=0.127 Sum_probs=120.4
Q ss_pred ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304 187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS 266 (537)
Q Consensus 187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~ 266 (537)
.++++.+.+|++++|+|+||||||||+++|+|. ..|+.| ++.++| .++. .. ...+++++
T Consensus 21 ~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl----~~~~~G----~i~~~g-~~~~--------~~----~~~i~~v~ 79 (220)
T cd03293 21 EDISLSVEEGEFVALVGPSGCGKSTLLRIIAGL----ERPTSG----EVLVDG-EPVT--------GP----GPDRGYVF 79 (220)
T ss_pred eceeEEEeCCcEEEEECCCCCCHHHHHHHHhCC----CCCCce----EEEECC-EECc--------cc----cCcEEEEe
Confidence 445677889999999999999999999999999 899999 888887 4332 11 25689999
Q ss_pred cCCCCCCCccceeeEEeecCcccccCCcccccccCcCC---ccccCCccEEEeccCccCccchhhhhcCCCceeeecccc
Q psy16304 267 QTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG 343 (537)
Q Consensus 267 Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~ 343 (537)
|++.++...+.. +++..... ..... ........+..+|+.... ...+.+|||||+||+ +
T Consensus 80 q~~~~~~~~tv~------------e~l~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgG~~qrl----~ 141 (220)
T cd03293 80 QQDALLPWLTVL------------DNVALGLE-LQGVPKAEARERAEELLELVGLSGFE-NAYPHQLSGGMRQRV----A 141 (220)
T ss_pred cccccccCCCHH------------HHHHHHHH-HcCCCHHHHHHHHHHHHHHcCChhhh-hCCcccCCHHHHHHH----H
Confidence 987755432220 00000000 00000 001122334456665443 444789999999999 9
Q ss_pred cccceeccCCceEEEEEe--cCchhhH--HHHH---HHHHhcCCEEEEEEeCCCcchhhhhh--hhhhc--CCcEEEEec
Q psy16304 344 FNRARVEYGNKYEVFLYD--LGGSEDF--RTIW---KQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMS--CNCQVYLIS 412 (537)
Q Consensus 344 la~all~~~e~p~lllLD--T~Gl~~~--~~l~---~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~--~G~ii~~g~ 412 (537)
++++++. + |++++|| |+|++.. ..++ .++.+..+.+++++ +|+..+....+ +++++ +|+++....
T Consensus 142 la~al~~-~--p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~-sH~~~~~~~~~d~i~~l~~~~G~i~~~~~ 217 (220)
T cd03293 142 LARALAV-D--PDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLV-THDIDEAVFLADRVVVLSARPGRIVAEVE 217 (220)
T ss_pred HHHHHHc-C--CCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEE-ecCHHHHHHhCCEEEEEECCCCEEEEEEE
Confidence 9999997 5 8999999 9999332 2233 33333334567777 89988765433 78888 798876544
No 120
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=5.2e-21 Score=195.25 Aligned_cols=195 Identities=15% Similarity=0.147 Sum_probs=126.9
Q ss_pred ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304 187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS 266 (537)
Q Consensus 187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~ 266 (537)
.++++.+.+|++++|+|+||||||||+++|+|. +.|++| ++.++| ..+...+. ......++..++++|
T Consensus 23 ~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl----~~p~~G----~i~~~g-~~i~~~~~---~~~~~~~~~~ig~v~ 90 (288)
T PRK13643 23 FDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGL----LQPTEG----KVTVGD-IVVSSTSK---QKEIKPVRKKVGVVF 90 (288)
T ss_pred eeeEEEEcCCCEEEEECCCCChHHHHHHHHhcC----CCCCCc----EEEECC-EECccccc---cccHHHHHhhEEEEe
Confidence 356778889999999999999999999999999 999999 999887 54421110 011122346799999
Q ss_pred cCCC--CCCCccceeeEEeecCcccccCCcccccccCcCC---ccccCCccEEEeccCccCccchhhhhcCCCceeeecc
Q psy16304 267 QTPL--GRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPT 341 (537)
Q Consensus 267 Q~~~--l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~t 341 (537)
|++. ++.. +. .| ++....... ... ...+....+..+|+........+..|||||+||+
T Consensus 91 q~~~~~l~~~-tv-----~~-------~l~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrv--- 153 (288)
T PRK13643 91 QFPESQLFEE-TV-----LK-------DVAFGPQNF-GIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRV--- 153 (288)
T ss_pred cCcchhcccc-hH-----HH-------HHHhHHHHc-CCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHH---
Confidence 9862 2211 11 11 000000000 000 0011223344567643222445899999999999
Q ss_pred cccccceeccCCceEEEEEe--cCchhhH--HHHH---HHHHhcCCEEEEEEeCCCcchhhh-hh-hhhhcCCcEEEEec
Q psy16304 342 VGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIW---KQYLGTVSQTLLVSHSLSGRPDDR-CQ-VYLMSCNCQVYLIS 412 (537)
Q Consensus 342 i~la~all~~~e~p~lllLD--T~Gl~~~--~~l~---~~~~~~~~~vIlVvdshd~~~~~~-~~-i~ll~~G~ii~~g~ 412 (537)
+++++++. + |++++|| |+|++.. ..++ ..+.+. +.+|+++ +||...... ++ ++++++|+++..+.
T Consensus 154 -aiA~aL~~-~--p~illLDEPt~gLD~~~~~~l~~~l~~l~~~-g~til~v-tHd~~~~~~~~dri~~l~~G~i~~~g~ 227 (288)
T PRK13643 154 -AIAGILAM-E--PEVLVLDEPTAGLDPKARIEMMQLFESIHQS-GQTVVLV-THLMDDVADYADYVYLLEKGHIISCGT 227 (288)
T ss_pred -HHHHHHHh-C--CCEEEEECCccCCCHHHHHHHHHHHHHHHHC-CCEEEEE-ecCHHHHHHhCCEEEEEECCEEEEECC
Confidence 99999997 5 8999999 9999332 2233 333332 4567777 899887754 33 99999999999888
Q ss_pred ccch
Q psy16304 413 AKNL 416 (537)
Q Consensus 413 nkdl 416 (537)
+.++
T Consensus 228 ~~~~ 231 (288)
T PRK13643 228 PSDV 231 (288)
T ss_pred HHHH
Confidence 7776
No 121
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.80 E-value=4.2e-21 Score=189.24 Aligned_cols=193 Identities=16% Similarity=0.085 Sum_probs=123.7
Q ss_pred ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304 187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS 266 (537)
Q Consensus 187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~ 266 (537)
.++++.+.+|++++|+|+||||||||+++|+|. ..|++| ++.++| ..+...+ ....++..+++++
T Consensus 17 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~----~~~~~G----~i~~~g-~~~~~~~------~~~~~~~~i~~~~ 81 (230)
T TIGR03410 17 RGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGL----LPVKSG----SIRLDG-EDITKLP------PHERARAGIAYVP 81 (230)
T ss_pred cceeeEECCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCC----EEEECC-EECCCCC------HHHHHHhCeEEec
Confidence 345677889999999999999999999999999 999999 888887 4332111 1112235789999
Q ss_pred cCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEec-cCccCccchhhhhcCCCceeeecccccc
Q psy16304 267 QTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLG-LDNAGKSSIIKRILGEPIISLVPTVGFN 345 (537)
Q Consensus 267 Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llG-l~~~gKs~li~~LSgG~rqrvs~ti~la 345 (537)
|++.+++..+.. + ++........ ..........+..++ +... ....+.+|||||+||+ +++
T Consensus 82 q~~~~~~~~tv~-----~-------~l~~~~~~~~-~~~~~~~~~~l~~~~~l~~~-~~~~~~~LS~G~~qrv----~la 143 (230)
T TIGR03410 82 QGREIFPRLTVE-----E-------NLLTGLAALP-RRSRKIPDEIYELFPVLKEM-LGRRGGDLSGGQQQQL----AIA 143 (230)
T ss_pred cCCcccCCCcHH-----H-------HHHHHHHhcC-cchHHHHHHHHHHHHhHHHH-hhCChhhCCHHHHHHH----HHH
Confidence 998765432220 0 0000000000 000000111122333 2222 2444889999999999 999
Q ss_pred cceeccCCceEEEEEe--cCchhhHH--HH---HHHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEecccch
Q psy16304 346 RARVEYGNKYEVFLYD--LGGSEDFR--TI---WKQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 346 ~all~~~e~p~lllLD--T~Gl~~~~--~l---~~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~nkdl 416 (537)
++++. + |+++++| |+|++... .+ +.++.+..+.+++++ +|+.+..... + ++++++|+++..+..+++
T Consensus 144 ~al~~-~--p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~-sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 144 RALVT-R--PKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLV-EQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred HHHhc-C--CCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEE-eCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 99996 5 8999999 99993332 22 233333334566666 8888877653 3 888999999887776554
No 122
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.80 E-value=6.4e-21 Score=189.21 Aligned_cols=193 Identities=12% Similarity=0.060 Sum_probs=125.6
Q ss_pred cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304 188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ 267 (537)
Q Consensus 188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q 267 (537)
++++.+.+|++++|+|+||||||||+++|+|. +.|++| +|.++| ..+... ......++..+++++|
T Consensus 19 ~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~----~~~~~G----~i~~~g-~~~~~~-----~~~~~~~~~~i~~~~q 84 (240)
T PRK09493 19 NIDLNIDQGEVVVIIGPSGSGKSTLLRCINKL----EEITSG----DLIVDG-LKVNDP-----KVDERLIRQEAGMVFQ 84 (240)
T ss_pred eeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC----CCCCce----EEEECC-EECCcC-----ChhHHHHhhceEEEec
Confidence 45677889999999999999999999999999 999999 899887 443211 0011223467899999
Q ss_pred CCCCCCCccceeeEEeecCcccccCCccc---ccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccccc
Q psy16304 268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDE---LTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF 344 (537)
Q Consensus 268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~---l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~l 344 (537)
++.+++..+.. + ++... ................+..+|+.... ...+..||+||+||+ ++
T Consensus 85 ~~~~~~~~tv~-----~-------~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~LS~G~~qrv----~l 147 (240)
T PRK09493 85 QFYLFPHLTAL-----E-------NVMFGPLRVRGASKEEAEKQARELLAKVGLAERA-HHYPSELSGGQQQRV----AI 147 (240)
T ss_pred ccccCCCCcHH-----H-------HHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHH-hcChhhcCHHHHHHH----HH
Confidence 87755432220 0 00000 00000000001112334456765443 445889999999999 99
Q ss_pred ccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccc
Q psy16304 345 NRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKN 415 (537)
Q Consensus 345 a~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkd 415 (537)
+++++. + |+++++| |+|++.. ..++..+.+. +.+++++ +|+.......+ ++++++|+++..+...+
T Consensus 148 a~al~~-~--p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~~tiii~-sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 222 (240)
T PRK09493 148 ARALAV-K--PKLMLFDEPTSALDPELRHEVLKVMQDLAEE-GMTMVIV-THEIGFAEKVASRLIFIDKGRIAEDGDPQV 222 (240)
T ss_pred HHHHhc-C--CCEEEEcCCcccCCHHHHHHHHHHHHHHHHc-CCEEEEE-eCCHHHHHHhCCEEEEEECCEEEeeCCHHH
Confidence 999996 5 8999999 9999332 2233333333 4566666 88888776533 88999999987766555
Q ss_pred h
Q psy16304 416 L 416 (537)
Q Consensus 416 l 416 (537)
+
T Consensus 223 ~ 223 (240)
T PRK09493 223 L 223 (240)
T ss_pred H
Confidence 4
No 123
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.80 E-value=6.7e-21 Score=184.60 Aligned_cols=177 Identities=15% Similarity=0.118 Sum_probs=115.5
Q ss_pred cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304 188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ 267 (537)
Q Consensus 188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q 267 (537)
++++.+.+|++++|+|+||||||||+++|+|. ..|++| +|.++| ..+.. ..++..+++++|
T Consensus 18 ~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~p~~G----~i~~~g-~~~~~----------~~~~~~i~~~~q 78 (205)
T cd03226 18 DLSLDLYAGEIIALTGKNGAGKTTLAKILAGL----IKESSG----SILLNG-KPIKA----------KERRKSIGYVMQ 78 (205)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHHHHHhcC----CCCCce----EEEECC-EEhhh----------HHhhcceEEEec
Confidence 45677889999999999999999999999999 999999 888887 33310 112356899999
Q ss_pred CCCC-CCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccccccc
Q psy16304 268 TPLG-RPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNR 346 (537)
Q Consensus 268 ~~~l-~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~ 346 (537)
++.. +...+. .+ ++........ ....+....+..+|+.... ...+.+|||||+||+ ++++
T Consensus 79 ~~~~~~~~~tv-----~e-------~l~~~~~~~~--~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv----~lar 139 (205)
T cd03226 79 DVDYQLFTDSV-----RE-------ELLLGLKELD--AGNEQAETVLKDLDLYALK-ERHPLSLSGGQKQRL----AIAA 139 (205)
T ss_pred ChhhhhhhccH-----HH-------HHhhhhhhcC--ccHHHHHHHHHHcCCchhc-CCCchhCCHHHHHHH----HHHH
Confidence 8631 111111 01 0000000000 0001122334456766543 455889999999999 9999
Q ss_pred ceeccCCceEEEEEe--cCchhhH--HHH---HHHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcE
Q psy16304 347 ARVEYGNKYEVFLYD--LGGSEDF--RTI---WKQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQ 407 (537)
Q Consensus 347 all~~~e~p~lllLD--T~Gl~~~--~~l---~~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~i 407 (537)
+++. + |+++++| |+|++.. ..+ +..+.+. +.+++++ +|+....... + ++++++|++
T Consensus 140 al~~-~--p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~~-sH~~~~~~~~~d~i~~l~~G~i 204 (205)
T cd03226 140 ALLS-G--KDLLIFDEPTSGLDYKNMERVGELIRELAAQ-GKAVIVI-THDYEFLAKVCDRVLLLANGAI 204 (205)
T ss_pred HHHh-C--CCEEEEeCCCccCCHHHHHHHHHHHHHHHHC-CCEEEEE-eCCHHHHHHhCCEEEEEECCEE
Confidence 9996 5 8999999 9999332 222 2333332 4566666 8998877653 3 888888875
No 124
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.80 E-value=5.8e-21 Score=192.50 Aligned_cols=216 Identities=10% Similarity=0.018 Sum_probs=137.2
Q ss_pred hhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceee
Q psy16304 151 ILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF 230 (537)
Q Consensus 151 ~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~ 230 (537)
.++.++++.+.|++..+ -.++++.+.+|++++|+|+||||||||+++|+|. +.|+.|
T Consensus 6 ~~l~i~~l~~~~~~~~~------------------l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~----~~~~~G- 62 (265)
T PRK10253 6 ARLRGEQLTLGYGKYTV------------------AENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRL----MTPAHG- 62 (265)
T ss_pred cEEEEEEEEEEECCEEE------------------eeecceEECCCCEEEEECCCCCCHHHHHHHHcCC----CCCCCc-
Confidence 35667788887654222 2345677889999999999999999999999999 999999
Q ss_pred eeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEee-cCcccccCCcccccccCcCCccccC
Q psy16304 231 NRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFR 309 (537)
Q Consensus 231 t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~ 309 (537)
++.++| .++..++. ......+++++|++.++...+. .+ ....... ....+..... ......
T Consensus 63 ---~i~~~g-~~~~~~~~-------~~~~~~i~~v~q~~~~~~~~tv-----~~~~~~~~~~-~~~~~~~~~~-~~~~~~ 124 (265)
T PRK10253 63 ---HVWLDG-EHIQHYAS-------KEVARRIGLLAQNATTPGDITV-----QELVARGRYP-HQPLFTRWRK-EDEEAV 124 (265)
T ss_pred ---EEEECC-EEhhhCCH-------HHHhhheEEeeccCcCCCCCcH-----HHHHHhCccc-ccccccCCCH-HHHHHH
Confidence 888887 43321111 1122568999999875543221 11 0000000 0000000000 000112
Q ss_pred CccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEE
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQT 382 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~v 382 (537)
...+..+|+.... ...+.+|||||+||+ +++++++. + |+++++| |+|++.. ..++..+.+..+.+
T Consensus 125 ~~~l~~~~l~~~~-~~~~~~LS~Gq~qrv----~laral~~-~--p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~t 196 (265)
T PRK10253 125 TKAMQATGITHLA-DQSVDTLSGGQRQRA----WIAMVLAQ-E--TAIMLLDEPTTWLDISHQIDLLELLSELNREKGYT 196 (265)
T ss_pred HHHHHHcCCHHHh-cCCcccCChHHHHHH----HHHHHHhc-C--CCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 2334456765443 445899999999999 99999996 5 8999999 9999332 22334443333456
Q ss_pred EEEEeCCCcchhhhhh--hhhhcCCcEEEEecccch
Q psy16304 383 LLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 383 IlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl 416 (537)
++++ +|+.......+ ++++++|+++..+..+++
T Consensus 197 iii~-tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (265)
T PRK10253 197 LAAV-LHDLNQACRYASHLIALREGKIVAQGAPKEI 231 (265)
T ss_pred EEEE-eCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 6666 89988765543 889999999887776655
No 125
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=5.6e-21 Score=194.52 Aligned_cols=214 Identities=13% Similarity=0.153 Sum_probs=138.9
Q ss_pred hhhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304 150 GILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG 229 (537)
Q Consensus 150 ~~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G 229 (537)
..++.++++.+.|+... .+..++++.+.+|++++|+|+||||||||+++|+|. ..|+.|
T Consensus 3 ~~~l~~~~l~~~~~~~~-----------------~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl----~~p~~G 61 (283)
T PRK13636 3 DYILKVEELNYNYSDGT-----------------HALKGININIKKGEVTAILGGNGAGKSTLFQNLNGI----LKPSSG 61 (283)
T ss_pred CceEEEEeEEEEeCCCC-----------------eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC----CCCCcc
Confidence 34677888888875211 012345677889999999999999999999999999 999999
Q ss_pred eeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCC-CCCccceeeEEeecCcccccCCcccccccCcCC---c
Q psy16304 230 FNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG-RPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---L 305 (537)
Q Consensus 230 ~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l-~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~ 305 (537)
++.++| ..+.. + .. . ...++..+++++|++.. +...+. .+ ++....... ... .
T Consensus 62 ----~i~i~g-~~~~~-~--~~-~-~~~~~~~ig~v~q~~~~~~~~~tv-----~e-------~l~~~~~~~-~~~~~~~ 118 (283)
T PRK13636 62 ----RILFDG-KPIDY-S--RK-G-LMKLRESVGMVFQDPDNQLFSASV-----YQ-------DVSFGAVNL-KLPEDEV 118 (283)
T ss_pred ----EEEECC-EECCC-C--cc-h-HHHHHhhEEEEecCcchhhccccH-----HH-------HHHhHHHHc-CCCHHHH
Confidence 999887 44321 0 00 1 12234679999998631 111111 01 000000000 000 0
Q ss_pred cccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhc
Q psy16304 306 VDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGT 378 (537)
Q Consensus 306 ~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~ 378 (537)
.......+..+|+.... ...+.+|||||+||+ +++++++. + |+++++| |+|++.. ..++..+.++
T Consensus 119 ~~~~~~~l~~~gL~~~~-~~~~~~LS~G~~qrl----~laraL~~-~--p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~ 190 (283)
T PRK13636 119 RKRVDNALKRTGIEHLK-DKPTHCLSFGQKKRV----AIAGVLVM-E--PKVLVLDEPTAGLDPMGVSEIMKLLVEMQKE 190 (283)
T ss_pred HHHHHHHHHHCCChhhh-hCCcccCCHHHHHHH----HHHHHHHc-C--CCEEEEeCCccCCCHHHHHHHHHHHHHHHHh
Confidence 01122334466776544 445899999999999 99999996 5 8999999 9999322 2334454444
Q ss_pred CCEEEEEEeCCCcchhhh-hh-hhhhcCCcEEEEecccch
Q psy16304 379 VSQTLLVSHSLSGRPDDR-CQ-VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 379 ~~~vIlVvdshd~~~~~~-~~-i~ll~~G~ii~~g~nkdl 416 (537)
.+.+++++ +|+...... ++ ++++++|+++..|.+.++
T Consensus 191 ~g~tillv-sH~~~~~~~~~dri~~l~~G~i~~~g~~~~~ 229 (283)
T PRK13636 191 LGLTIIIA-THDIDIVPLYCDNVFVMKEGRVILQGNPKEV 229 (283)
T ss_pred CCCEEEEE-ecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 34567777 899887764 33 899999999988887765
No 126
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.80 E-value=7.4e-21 Score=187.23 Aligned_cols=210 Identities=15% Similarity=0.104 Sum_probs=131.6
Q ss_pred hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304 152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN 231 (537)
Q Consensus 152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t 231 (537)
++.++++.+.|+.... . ..+-.++++.+.+|++++|+|+||||||||+++|+|. +.|+.|
T Consensus 6 ~l~~~~l~~~~~~~~~---~-----------~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl----~~p~~G-- 65 (228)
T PRK10584 6 IVEVHHLKKSVGQGEH---E-----------LSILTGVELVVKRGETIALIGESGSGKSTLLAILAGL----DDGSSG-- 65 (228)
T ss_pred eEEEeeeEEEccCCCc---c-----------eEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcC----CCCCCe--
Confidence 4677888887653210 0 0012345677889999999999999999999999999 999999
Q ss_pred eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC---cccc
Q psy16304 232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDF 308 (537)
Q Consensus 232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~ 308 (537)
++.++| ..+..++. ..........+++++|++.++...+. .| ++.... ...... ...+
T Consensus 66 --~i~~~g-~~~~~~~~---~~~~~~~~~~i~~~~q~~~l~~~~tv-----~~-------~l~~~~-~~~~~~~~~~~~~ 126 (228)
T PRK10584 66 --EVSLVG-QPLHQMDE---EARAKLRAKHVGFVFQSFMLIPTLNA-----LE-------NVELPA-LLRGESSRQSRNG 126 (228)
T ss_pred --eEEECC-EEcccCCH---HHHHHHHhheEEEEEcccccCCCcCH-----HH-------HHHHHH-HhcCCCHHHHHHH
Confidence 898887 44432221 11111223568999999876543222 00 000000 000000 0111
Q ss_pred CCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH--HHH---HHHHHhcCCE
Q psy16304 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTI---WKQYLGTVSQ 381 (537)
Q Consensus 309 ~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l---~~~~~~~~~~ 381 (537)
....+..+|+.... ...+..|||||+||+ +++++++. + |+++++| |+|++.. ..+ +.++.++.+.
T Consensus 127 ~~~~l~~~~l~~~~-~~~~~~LS~Ge~qrl----~la~al~~-~--p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~ 198 (228)
T PRK10584 127 AKALLEQLGLGKRL-DHLPAQLSGGEQQRV----ALARAFNG-R--PDVLFADEPTGNLDRQTGDKIADLLFSLNREHGT 198 (228)
T ss_pred HHHHHHHcCCHhHh-hCChhhCCHHHHHHH----HHHHHHhc-C--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 22334456665443 345889999999999 99999996 5 8999999 9999332 222 2333333345
Q ss_pred EEEEEeCCCcchhhhhh-hhhhcCCcEEE
Q psy16304 382 TLLVSHSLSGRPDDRCQ-VYLMSCNCQVY 409 (537)
Q Consensus 382 vIlVvdshd~~~~~~~~-i~ll~~G~ii~ 409 (537)
+++++ +|+....+.++ ++++++|+++.
T Consensus 199 tii~~-sH~~~~~~~~d~i~~l~~g~i~~ 226 (228)
T PRK10584 199 TLILV-THDLQLAARCDRRLRLVNGQLQE 226 (228)
T ss_pred EEEEE-ecCHHHHHhCCEEEEEECCEEEe
Confidence 66776 78877666544 78888888754
No 127
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.80 E-value=8.5e-21 Score=189.74 Aligned_cols=200 Identities=12% Similarity=0.104 Sum_probs=128.5
Q ss_pred ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEee---cCC---CchhhHHHHh
Q psy16304 187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD---LGG---SEDFRTIWKQ 260 (537)
Q Consensus 187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D---~~G---~~~~r~~~~~ 260 (537)
.++++.+.+|++++|+|+||||||||+++|+|. ..|++| ++.++| ..+..++ ..+ .......++.
T Consensus 17 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~----~~~~~G----~i~~~g-~~i~~~~~~~~~~~~~~~~~~~~~~~ 87 (252)
T TIGR03005 17 DGLNFSVAAGEKVALIGPSGSGKSTILRILMTL----EPIDEG----QIQVEG-EQLYHMPGRNGPLVPADEKHLRQMRN 87 (252)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCce----EEEECC-EEccccccccccccccchhHHHHHhh
Confidence 345677889999999999999999999999999 999999 899887 5543332 000 0001122346
Q ss_pred hhhccccCCCCCCCccceeeEEeecCcccccCCccc-c--cccCcCCccccCCccEEEeccCccCccchhhhhcCCCcee
Q psy16304 261 YLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDE-L--TSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIIS 337 (537)
Q Consensus 261 ~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~-l--~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqr 337 (537)
.+++++|++.+++..+.. + ++... . ...............+..+|+.... ...+.+|||||+||
T Consensus 88 ~i~~v~q~~~~~~~~tv~-----~-------nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~LS~G~~qr 154 (252)
T TIGR03005 88 KIGMVFQSFNLFPHKTVL-----D-------NVTEAPVLVLGMARAEAEKRAMELLDMVGLADKA-DHMPAQLSGGQQQR 154 (252)
T ss_pred CeEEEecCcccCCCCcHH-----H-------HHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHh-hcChhhcCHHHHHH
Confidence 799999998765432220 0 00000 0 0000000001112233456665443 44588999999999
Q ss_pred eecccccccceeccCCceEEEEEe--cCchhhH--HH---HHHHHHhcCCEEEEEEeCCCcchhhh-hh-hhhhcCCcEE
Q psy16304 338 LVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RT---IWKQYLGTVSQTLLVSHSLSGRPDDR-CQ-VYLMSCNCQV 408 (537)
Q Consensus 338 vs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~---l~~~~~~~~~~vIlVvdshd~~~~~~-~~-i~ll~~G~ii 408 (537)
+ +++++++. + |+++++| |+|++.. .. .++++.++...+++++ +|+...... ++ ++++++|+++
T Consensus 155 v----~laral~~-~--p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiiv-sH~~~~~~~~~d~i~~l~~G~i~ 226 (252)
T TIGR03005 155 V----AIARALAM-R--PKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLV-THEMGFAREFADRVCFFDKGRIV 226 (252)
T ss_pred H----HHHHHHHc-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEE-eCCHHHHHHhcCEEEEEECCEEE
Confidence 9 99999996 5 8999999 9999433 22 2334433334566666 888887754 33 8899999998
Q ss_pred EEecccch
Q psy16304 409 YLISAKNL 416 (537)
Q Consensus 409 ~~g~nkdl 416 (537)
..+..+++
T Consensus 227 ~~g~~~~~ 234 (252)
T TIGR03005 227 EQGKPDEI 234 (252)
T ss_pred EeCCHHHH
Confidence 87766555
No 128
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.80 E-value=7.7e-21 Score=210.31 Aligned_cols=279 Identities=13% Similarity=0.080 Sum_probs=174.7
Q ss_pred ccccCCcccccccceeeeeeeccchhhhhHHHHHhhhcccccccccccccccCccccccccCCCCCCchhHHHHHHHHHH
Q psy16304 68 FANSIEPIEMVEHKMLRDVVLYNMYKAEIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAPTFEVCIVSLLVHL 147 (537)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~ 147 (537)
+.+.+.+.++++-- ..+.....|+..+...+..++....+++++.++++.+....+. .+...
T Consensus 251 ~~g~it~g~l~a~~--------~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~-~~~~~--------- 312 (544)
T TIGR01842 251 IDGEITPGMMIAGS--------ILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA-MPLPE--------- 312 (544)
T ss_pred HcCCCCHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC-CCCCC---------
Confidence 35567777766532 2223457899999999999999999999999988743322111 00000
Q ss_pred HHhhhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCc
Q psy16304 148 MRGILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPT 227 (537)
Q Consensus 148 m~~~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt 227 (537)
....+.++++...|++.. . ..-.++++.+++|++++|+|+||||||||+++|+|. +.|+
T Consensus 313 -~~~~i~~~~v~~~y~~~~---~-------------~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~----~~~~ 371 (544)
T TIGR01842 313 -PEGHLSVENVTIVPPGGK---K-------------PTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGI----WPPT 371 (544)
T ss_pred -CCCeEEEEEEEEEcCCCC---c-------------cccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCC
Confidence 012356777777664321 0 012345678889999999999999999999999999 9999
Q ss_pred eeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCC-ccceeeEEee-cCcccccCCcccccccCcCCc
Q psy16304 228 VGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPD-SRTCQVYLIM-CGVHQVSGIPDELTSATHLPL 305 (537)
Q Consensus 228 ~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~ 305 (537)
+| ++.++| .++..++. ..+++.+++++|++.++.. ..+++.+.-+ .+.++ +.+.++..+ +
T Consensus 372 ~G----~i~~~g-~~i~~~~~-------~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~---~~~~~~~~~-~-- 433 (544)
T TIGR01842 372 SG----SVRLDG-ADLKQWDR-------ETFGKHIGYLPQDVELFPGTVAENIARFGENADPEK---IIEAAKLAG-V-- 433 (544)
T ss_pred Cc----eEEECC-EehhhCCH-------HHHhhheEEecCCcccccccHHHHHhccCCCCCHHH---HHHHHHHhC-h--
Confidence 99 999987 55543332 2344789999999987754 2222211100 11111 000000000 0
Q ss_pred cccCCccEEEe--ccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH--HHHHHHHhc-
Q psy16304 306 VDFRSVPILVL--GLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR--TIWKQYLGT- 378 (537)
Q Consensus 306 ~~~~~~~L~ll--Gl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~--~l~~~~~~~- 378 (537)
...+..+ |+...- ......|||||+||+ ++||+++. + |+++++| |++++... .+.+.+.+.
T Consensus 434 ----~~~i~~l~~gl~t~~-~~~g~~LSgGq~qrl----~lARall~-~--~~ililDEpts~LD~~~~~~i~~~l~~~~ 501 (544)
T TIGR01842 434 ----HELILRLPDGYDTVI-GPGGATLSGGQRQRI----ALARALYG-D--PKLVVLDEPNSNLDEEGEQALANAIKALK 501 (544)
T ss_pred ----HHHHHhCcccccccc-CCCcCCCCHHHHHHH----HHHHHHhc-C--CCEEEEeCCccccCHHHHHHHHHHHHHHh
Confidence 0000011 111110 111456999999999 99999996 5 8999999 99994332 233433332
Q ss_pred -CCEEEEEEeCCCcchhhhhh-hhhhcCCcEEEEecccch
Q psy16304 379 -VSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 379 -~~~vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g~nkdl 416 (537)
.+.+++++ +|+......++ ++++++|+++..|++.++
T Consensus 502 ~~~~tvi~i-th~~~~~~~~d~i~~l~~G~i~~~g~~~~l 540 (544)
T TIGR01842 502 ARGITVVVI-THRPSLLGCVDKILVLQDGRIARFGERDEV 540 (544)
T ss_pred hCCCEEEEE-eCCHHHHHhCCEEEEEECCEEEeeCCHHHH
Confidence 23466666 78877666555 899999999988877665
No 129
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.80 E-value=9.5e-21 Score=188.12 Aligned_cols=201 Identities=14% Similarity=0.095 Sum_probs=126.1
Q ss_pred cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304 188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ 267 (537)
Q Consensus 188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q 267 (537)
++++.+.+|++++|+|+||||||||+++|+|. +.|++| ++.++| .++...+ .+...+..+++++|
T Consensus 20 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~----~~p~~G----~i~~~g-~~~~~~~------~~~~~~~~i~~~~q 84 (242)
T TIGR03411 20 DLSLYVDPGELRVIIGPNGAGKTTMMDVITGK----TRPDEG----SVLFGG-TDLTGLP------EHQIARAGIGRKFQ 84 (242)
T ss_pred eeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC----CCCCCC----eEEECC-eecCCCC------HHHHHhcCeeEecc
Confidence 45677889999999999999999999999999 899999 899887 4332111 11122356999999
Q ss_pred CCCCCCCccce--eeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccc
Q psy16304 268 TPLGRPDSRTC--QVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN 345 (537)
Q Consensus 268 ~~~l~~~~~~~--il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la 345 (537)
++.+++..+.. +.+..... ......+.....-.........+..+|+.... ...+..|||||+||+ +++
T Consensus 85 ~~~~~~~~tv~~nl~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~Ge~qrv----~la 155 (242)
T TIGR03411 85 KPTVFENLTVFENLELALPRD----KSVFASLFFRLSAEEKDRIEEVLETIGLADEA-DRLAGLLSHGQKQWL----EIG 155 (242)
T ss_pred ccccCCCCCHHHHHHHhhhcc----cccccccccccHHHHHHHHHHHHHHcCCchhh-cCChhhCCHHHHHHH----HHH
Confidence 98766543321 10000000 00000000000000011122334456766543 345889999999999 999
Q ss_pred cceeccCCceEEEEEe--cCchhhH--HHHHHHHHhc-CCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEecccch
Q psy16304 346 RARVEYGNKYEVFLYD--LGGSEDF--RTIWKQYLGT-VSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 346 ~all~~~e~p~lllLD--T~Gl~~~--~~l~~~~~~~-~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~nkdl 416 (537)
++++. + |+++++| |+|++.. ..+++.+.+- .+.+++++ +|+.+..... + ++++++|+++..+...++
T Consensus 156 ral~~-~--p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~-sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~ 229 (242)
T TIGR03411 156 MLLMQ-D--PKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVV-EHDMEFVRSIADKVTVLHQGSVLAEGSLDQV 229 (242)
T ss_pred HHHhc-C--CCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEE-ECCHHHHHHhCCEEEEEECCeEEeeCCHHHH
Confidence 99997 5 8999999 9999333 2233322211 13566666 8888877653 3 888999999887766555
No 130
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=5.8e-21 Score=193.53 Aligned_cols=210 Identities=13% Similarity=0.047 Sum_probs=134.9
Q ss_pred hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304 152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN 231 (537)
Q Consensus 152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t 231 (537)
++.++++.+.|+... .+..++++.+.+|++++|+|+||||||||+++|+|. +.|++|
T Consensus 4 ~l~~~~l~~~~~~~~-----------------~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~p~~G-- 60 (274)
T PRK13647 4 IIEVEDLHFRYKDGT-----------------KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGI----YLPQRG-- 60 (274)
T ss_pred eEEEEEEEEEeCCCC-----------------eeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcC----CCCCce--
Confidence 466788888764211 022345677889999999999999999999999999 999999
Q ss_pred eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCC-CCCCccceeeEEeecCcccccCCccccc--ccCcCCcccc
Q psy16304 232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL-GRPDSRTCQVYLIMCGVHQVSGIPDELT--SATHLPLVDF 308 (537)
Q Consensus 232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~-l~~~~~~~il~v~Ds~~~~~~~l~~~l~--~~~~l~~~~~ 308 (537)
+|.++| ..+. . .. . ......+++++|++. .+...+. .+ ++..... .........+
T Consensus 61 --~i~~~g-~~~~---~--~~-~-~~~~~~i~~v~q~~~~~~~~~tv-----~e-------~l~~~~~~~~~~~~~~~~~ 118 (274)
T PRK13647 61 --RVKVMG-REVN---A--EN-E-KWVRSKVGLVFQDPDDQVFSSTV-----WD-------DVAFGPVNMGLDKDEVERR 118 (274)
T ss_pred --EEEECC-EECC---C--CC-H-HHHHhhEEEEecChhhhhccCcH-----HH-------HHHhhHHHcCCCHHHHHHH
Confidence 999887 4331 1 11 1 122367999999863 1111111 00 0000000 0000000011
Q ss_pred CCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCE
Q psy16304 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQ 381 (537)
Q Consensus 309 ~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~ 381 (537)
....+..+|+.+.. .+.+.+|||||+||+ +++++++. + |+++++| |+|++.. ..++..+.+. +.
T Consensus 119 ~~~~l~~~~L~~~~-~~~~~~LSgG~~qrv----~laraL~~-~--p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-g~ 189 (274)
T PRK13647 119 VEEALKAVRMWDFR-DKPPYHLSYGQKKRV----AIAGVLAM-D--PDVIVLDEPMAYLDPRGQETLMEILDRLHNQ-GK 189 (274)
T ss_pred HHHHHHHCCCHHHh-cCChhhCCHHHHHHH----HHHHHHHc-C--CCEEEEECCCcCCCHHHHHHHHHHHHHHHHC-CC
Confidence 22334466776543 555899999999999 99999996 5 8999999 9999322 2233444333 45
Q ss_pred EEEEEeCCCcchhhh-hh-hhhhcCCcEEEEecccch
Q psy16304 382 TLLVSHSLSGRPDDR-CQ-VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 382 vIlVvdshd~~~~~~-~~-i~ll~~G~ii~~g~nkdl 416 (537)
+++++ +|+...... ++ ++++++|+++..+.+.++
T Consensus 190 tili~-tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 190 TVIVA-THDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred EEEEE-eCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 67777 899887754 33 899999999988776543
No 131
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.80 E-value=5.2e-21 Score=191.34 Aligned_cols=219 Identities=16% Similarity=0.166 Sum_probs=133.1
Q ss_pred hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304 152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN 231 (537)
Q Consensus 152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t 231 (537)
++.++++.+.|++.... .++++.+.+|++++|+|+||||||||+++|+|. ..|++|
T Consensus 3 ~l~~~~l~~~~~~~~~l------------------~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~----~~~~~G-- 58 (253)
T TIGR02323 3 LLQVSGLSKSYGGGKGC------------------RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGR----LAPDHG-- 58 (253)
T ss_pred eEEEeeeEEEeCCceEe------------------ecceEEEeCCcEEEEECCCCCCHHHHHHHHhCC----CCCCCc--
Confidence 45677777776542222 235677889999999999999999999999999 899999
Q ss_pred eEEEEECCcEE---EEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccC--cC-Cc
Q psy16304 232 RARVEYGNKYE---VFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSAT--HL-PL 305 (537)
Q Consensus 232 ~~~i~i~g~~~---i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~--~l-~~ 305 (537)
+|.++| .. +.+.+. ........+...+++++|++........ .+.+ ++...+.... .. ..
T Consensus 59 --~i~~~g-~~~~~~~~~~~-~~~~~~~~~~~~i~~~~q~~~~~~~~~~---~~~~-------~i~~~~~~~~~~~~~~~ 124 (253)
T TIGR02323 59 --TATYIM-RSGAELELYQL-SEAERRRLMRTEWGFVHQNPRDGLRMRV---SAGA-------NIGERLMAIGARHYGNI 124 (253)
T ss_pred --EEEEec-ccccccccccC-CHHHHHHhhhcceEEEEeCcccccCccc---cHHH-------HHHHHHHHhcccchHHH
Confidence 888876 22 101111 0011111223568999998642111000 0000 0000000000 00 00
Q ss_pred cccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH-----HHHHHHHhc
Q psy16304 306 VDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR-----TIWKQYLGT 378 (537)
Q Consensus 306 ~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~-----~l~~~~~~~ 378 (537)
.......+..+|+........+..|||||+||+ +++++++. + |+++++| |+|++... .++..+.++
T Consensus 125 ~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv----~laral~~-~--p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~ 197 (253)
T TIGR02323 125 RAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRL----QIARNLVT-R--PRLVFMDEPTGGLDVSVQARLLDLLRGLVRD 197 (253)
T ss_pred HHHHHHHHHHcCCChhhhhcCchhcCHHHHHHH----HHHHHHhc-C--CCEEEEcCCCccCCHHHHHHHHHHHHHHHHh
Confidence 111223344566643223445889999999999 99999996 5 8999999 99994332 222333333
Q ss_pred CCEEEEEEeCCCcchhhh-hh-hhhhcCCcEEEEecccch
Q psy16304 379 VSQTLLVSHSLSGRPDDR-CQ-VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 379 ~~~vIlVvdshd~~~~~~-~~-i~ll~~G~ii~~g~nkdl 416 (537)
.+.+++++ +|+...... ++ ++++++|+++..+.+.++
T Consensus 198 ~~~tii~v-sH~~~~~~~~~d~~~~l~~G~i~~~~~~~~~ 236 (253)
T TIGR02323 198 LGLAVIIV-THDLGVARLLAQRLLVMQQGRVVESGLTDQV 236 (253)
T ss_pred cCCEEEEE-eCCHHHHHHhcCEEEEEECCEEEEECCHHHH
Confidence 34567777 788887764 33 888999999887776655
No 132
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.80 E-value=7.1e-21 Score=184.75 Aligned_cols=182 Identities=16% Similarity=0.125 Sum_probs=119.5
Q ss_pred ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304 187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS 266 (537)
Q Consensus 187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~ 266 (537)
.++++.+.+|++++|+|+||||||||+++|+|. ..|++| ++.++| ..+.. .. .+...+++++
T Consensus 17 ~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl----~~~~~G----~i~~~g-~~~~~-----~~----~~~~~i~~~~ 78 (208)
T cd03268 17 DDISLHVKKGEIYGFLGPNGAGKTTTMKIILGL----IKPDSG----EITFDG-KSYQK-----NI----EALRRIGALI 78 (208)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC----cCCCce----EEEECC-Ccccc-----hH----HHHhhEEEec
Confidence 345677889999999999999999999999999 899999 888887 33211 01 1235689999
Q ss_pred cCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccccccc
Q psy16304 267 QTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNR 346 (537)
Q Consensus 267 Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~ 346 (537)
|++.+++..+.. + ++....... .. ...+....+..+|+.... ...+.+|||||+||+ ++++
T Consensus 79 q~~~~~~~~tv~-----e-------~l~~~~~~~-~~-~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv----~la~ 139 (208)
T cd03268 79 EAPGFYPNLTAR-----E-------NLRLLARLL-GI-RKKRIDEVLDVVGLKDSA-KKKVKGFSLGMKQRL----GIAL 139 (208)
T ss_pred CCCccCccCcHH-----H-------HHHHHHHhc-CC-cHHHHHHHHHHcCCHHHH-hhhHhhCCHHHHHHH----HHHH
Confidence 987755432220 0 000000000 00 011122233455665443 445889999999999 9999
Q ss_pred ceeccCCceEEEEEe--cCchhhH--HHHH---HHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEE
Q psy16304 347 ARVEYGNKYEVFLYD--LGGSEDF--RTIW---KQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYL 410 (537)
Q Consensus 347 all~~~e~p~lllLD--T~Gl~~~--~~l~---~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~ 410 (537)
+++. + |+++++| |+|++.. ..++ ..+.+ .+.+++++ +|+....... + ++++++|+++..
T Consensus 140 al~~-~--p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~-tH~~~~~~~~~d~v~~l~~g~i~~~ 207 (208)
T cd03268 140 ALLG-N--PDLLILDEPTNGLDPDGIKELRELILSLRD-QGITVLIS-SHLLSEIQKVADRIGIINKGKLIEE 207 (208)
T ss_pred HHhc-C--CCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEE-cCCHHHHHHhcCEEEEEECCEEEec
Confidence 9996 5 8999999 9999333 2222 33333 34566666 8998877653 3 888999987653
No 133
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.80 E-value=1.2e-20 Score=207.11 Aligned_cols=220 Identities=14% Similarity=0.068 Sum_probs=140.0
Q ss_pred hhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceee
Q psy16304 151 ILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF 230 (537)
Q Consensus 151 ~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~ 230 (537)
.++.++++.+.|+...+. .+++|.+.+|++++|+|+||||||||+++|+|. ..|++|
T Consensus 4 ~~l~~~~l~~~~~~~~il------------------~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl----~~p~~G- 60 (510)
T PRK09700 4 PYISMAGIGKSFGPVHAL------------------KSVNLTVYPGEIHALLGENGAGKSTLMKVLSGI----HEPTKG- 60 (510)
T ss_pred ceEEEeeeEEEcCCeEEe------------------eeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCC----cCCCcc-
Confidence 457788888887643222 335677889999999999999999999999999 899999
Q ss_pred eeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCC
Q psy16304 231 NRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRS 310 (537)
Q Consensus 231 t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~ 310 (537)
+|.++| .++..++ .....+..+++++|++.++...+..-.+.+. ......... ......-....+..
T Consensus 61 ---~i~~~g-~~i~~~~------~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~--~~~~~~~~~-~~~~~~~~~~~~~~ 127 (510)
T PRK09700 61 ---TITINN-INYNKLD------HKLAAQLGIGIIYQELSVIDELTVLENLYIG--RHLTKKVCG-VNIIDWREMRVRAA 127 (510)
T ss_pred ---EEEECC-EECCCCC------HHHHHHCCeEEEeecccccCCCcHHHHhhhc--ccccccccc-ccccCHHHHHHHHH
Confidence 888887 4432111 1112235689999997755443320000000 000000000 00000000011122
Q ss_pred ccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHHH-----HHHHHHhcCCEEE
Q psy16304 311 VPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRT-----IWKQYLGTVSQTL 383 (537)
Q Consensus 311 ~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~-----l~~~~~~~~~~vI 383 (537)
..+..+|+.... ...+.+|||||+||+ +++++++. + |++++|| |+|++.... ++.++.+. +.++
T Consensus 128 ~~l~~~gl~~~~-~~~~~~LSgG~~qrv----~ia~al~~-~--p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~ti 198 (510)
T PRK09700 128 MMLLRVGLKVDL-DEKVANLSISHKQML----EIAKTLML-D--AKVIIMDEPTSSLTNKEVDYLFLIMNQLRKE-GTAI 198 (510)
T ss_pred HHHHHcCCCCCc-ccchhhCCHHHHHHH----HHHHHHhc-C--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEE
Confidence 334567776543 555899999999999 99999996 5 8999999 999943322 22343333 4567
Q ss_pred EEEeCCCcchhhhhh--hhhhcCCcEEEEecccch
Q psy16304 384 LVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 384 lVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl 416 (537)
+++ +||.......+ ++++++|+++..+.+.++
T Consensus 199 iiv-sHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 232 (510)
T PRK09700 199 VYI-SHKLAEIRRICDRYTVMKDGSSVCSGMVSDV 232 (510)
T ss_pred EEE-eCCHHHHHHhCCEEEEEECCEEeeecchhhC
Confidence 777 89988876543 899999999887776654
No 134
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.80 E-value=1.1e-20 Score=214.80 Aligned_cols=280 Identities=14% Similarity=0.117 Sum_probs=179.8
Q ss_pred ccccCCcccccccceeeeeeeccch-hhhhHHHHHhhhcccccccccccccccCccccccccCCCCC-CchhHHHHHHHH
Q psy16304 68 FANSIEPIEMVEHKMLRDVVLYNMY-KAEIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPA-PTFEVCIVSLLV 145 (537)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~l~ 145 (537)
+.+.+.+-++++ ++.+ .....|+..+...+.+++....+++++.++++.+....... ++...
T Consensus 388 ~~g~it~G~lia---------~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~------- 451 (694)
T TIGR01846 388 IGGALSPGQLVA---------FNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSAGLAALPE------- 451 (694)
T ss_pred HcCCCCHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCCCCCCCCC-------
Confidence 455666666655 3443 45678999999999999999999999999987543321110 00000
Q ss_pred HHHHhhhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCcccc
Q psy16304 146 HLMRGILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLV 225 (537)
Q Consensus 146 ~~m~~~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~ 225 (537)
....+.+++++..|+... . .+-.++++.+++|++++|+|+||||||||+++|+|. +.
T Consensus 452 ---~~~~i~~~~vsf~y~~~~---~-------------~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~----~~ 508 (694)
T TIGR01846 452 ---LRGAITFENIRFRYAPDS---P-------------EVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRL----YT 508 (694)
T ss_pred ---CCCeEEEEEEEEEcCCCC---c-------------cccccceEEECCCCEEEEECCCCCCHHHHHHHHhcC----CC
Confidence 012356677777664321 0 012345677889999999999999999999999999 99
Q ss_pred CceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCC-ccceeeEEe-ecCcccccCCcccc---ccc
Q psy16304 226 PTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPD-SRTCQVYLI-MCGVHQVSGIPDEL---TSA 300 (537)
Q Consensus 226 Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~-Ds~~~~~~~l~~~l---~~~ 300 (537)
|+.| +|.++| .++..++. ..+++.+++|+|++.++.. ..+++.+.- +.+.++..+..+.. +.+
T Consensus 509 p~~G----~I~idg-~~i~~~~~-------~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i 576 (694)
T TIGR01846 509 PQHG----QVLVDG-VDLAIADP-------AWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFI 576 (694)
T ss_pred CCCc----eEEECC-EehhhCCH-------HHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHH
Confidence 9999 999997 66655443 2344789999999987765 223222111 01111110000000 001
Q ss_pred CcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH--HHHHHHHH
Q psy16304 301 THLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIWKQYL 376 (537)
Q Consensus 301 ~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l~~~~~ 376 (537)
..++.... ..+|.. ...|||||+||+ ++||+++. + |++++|| |++++.. ..+++.+.
T Consensus 577 ~~lp~gl~-----t~i~~~-------g~~LSgGq~qri----~lARall~-~--~~ililDEpts~LD~~~~~~i~~~l~ 637 (694)
T TIGR01846 577 SELPQGYN-----TEVGEK-------GANLSGGQRQRI----AIARALVG-N--PRILIFDEATSALDYESEALIMRNMR 637 (694)
T ss_pred HhCcCccC-----cEecCC-------CCCCCHHHHHHH----HHHHHHHh-C--CCEEEEECCCcCCCHHHHHHHHHHHH
Confidence 11110000 022221 345999999999 99999996 5 8999999 9999433 33334433
Q ss_pred hc-CCEEEEEEeCCCcchhhhhh-hhhhcCCcEEEEecccchhh
Q psy16304 377 GT-VSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLISAKNLSN 418 (537)
Q Consensus 377 ~~-~~~vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g~nkdl~~ 418 (537)
+. .+.+++++ +|+......++ ++++++|+++..|+.+++.+
T Consensus 638 ~~~~~~t~i~i-tH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~ 680 (694)
T TIGR01846 638 EICRGRTVIII-AHRLSTVRACDRIIVLEKGQIAESGRHEELLA 680 (694)
T ss_pred HHhCCCEEEEE-eCChHHHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 32 24566777 78888777666 89999999999998887743
No 135
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=9.1e-21 Score=196.07 Aligned_cols=223 Identities=12% Similarity=0.070 Sum_probs=139.4
Q ss_pred hhhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304 150 GILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG 229 (537)
Q Consensus 150 ~~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G 229 (537)
..++.++++.+.|+..... + ..+-.++++.+.+|++++|+|+||||||||+++|+|. +.|++|
T Consensus 19 ~~~l~~~nl~~~y~~~~~~-~------------~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl----~~p~~G 81 (320)
T PRK13631 19 DIILRVKNLYCVFDEKQEN-E------------LVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGL----IKSKYG 81 (320)
T ss_pred CceEEEEeEEEEeCCCCcc-c------------ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCC
Confidence 4567888998887532100 0 0123456677889999999999999999999999999 999999
Q ss_pred eeeEEEEECCcEEEEEe-e------cC-CC-chhhHHHHhhhhccccCCC--CCCCccceeeEEeecCcccccCCccccc
Q psy16304 230 FNRARVEYGNKYEVFLY-D------LG-GS-EDFRTIWKQYLGTVSQTPL--GRPDSRTCQVYLIMCGVHQVSGIPDELT 298 (537)
Q Consensus 230 ~t~~~i~i~g~~~i~~~-D------~~-G~-~~~r~~~~~~i~~v~Q~~~--l~~~~~~~il~v~Ds~~~~~~~l~~~l~ 298 (537)
+|.++| ..+.-. . .. .. ......+++.++++||++. ++.. +. .+ ++.....
T Consensus 82 ----~I~i~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~-tv-----~e-------ni~~~~~ 143 (320)
T PRK13631 82 ----TIQVGD-IYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKD-TI-----EK-------DIMFGPV 143 (320)
T ss_pred ----eEEECC-EEcccccccccccccccccccchHHHHHhcEEEEEECchhccccc-hH-----HH-------HHHhhHH
Confidence 999987 443210 0 00 00 0011234477999999863 3321 11 00 0000000
Q ss_pred --ccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH-----
Q psy16304 299 --SATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR----- 369 (537)
Q Consensus 299 --~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~----- 369 (537)
.........+....+..+|+...-....+.+|||||+||+ +++++++. + |++++|| |+|++...
T Consensus 144 ~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRv----aiAraL~~-~--p~iLLLDEPtsgLD~~~~~~l~ 216 (320)
T PRK13631 144 ALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRV----AIAGILAI-Q--PEILIFDEPTAGLDPKGEHEMM 216 (320)
T ss_pred hcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHH----HHHHHHHc-C--CCEEEEECCccCCCHHHHHHHH
Confidence 0000000111223344567752112344789999999999 99999996 5 8999999 99994332
Q ss_pred HHHHHHHhcCCEEEEEEeCCCcchhhh-hh-hhhhcCCcEEEEecccch
Q psy16304 370 TIWKQYLGTVSQTLLVSHSLSGRPDDR-CQ-VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 370 ~l~~~~~~~~~~vIlVvdshd~~~~~~-~~-i~ll~~G~ii~~g~nkdl 416 (537)
..+..+.++ +.+++++ +|+.+.... ++ ++++++|+++..|++.++
T Consensus 217 ~~L~~l~~~-g~Tiiiv-tHd~~~~~~~adri~vl~~G~i~~~g~~~~~ 263 (320)
T PRK13631 217 QLILDAKAN-NKTVFVI-THTMEHVLEVADEVIVMDKGKILKTGTPYEI 263 (320)
T ss_pred HHHHHHHHC-CCEEEEE-ecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 222333333 4567777 899886643 33 999999999999888766
No 136
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.80 E-value=7.9e-21 Score=184.75 Aligned_cols=182 Identities=15% Similarity=0.144 Sum_probs=115.0
Q ss_pred ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304 187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS 266 (537)
Q Consensus 187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~ 266 (537)
.++++.+.+|++++|+|+||||||||+++|+|. ..|+.| ++.++| ..+..++ ...++..+++++
T Consensus 18 ~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~----~~~~~G----~i~~~g-~~~~~~~-------~~~~~~~i~~~~ 81 (211)
T cd03225 18 DDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGL----LGPTSG----EVLVDG-KDLTKLS-------LKELRRKVGLVF 81 (211)
T ss_pred cceEEEEcCCcEEEEECCCCCCHHHHHHHHhcC----CCCCCc----eEEECC-EEcccCC-------HHHHHhhceEEe
Confidence 345677889999999999999999999999999 899999 898887 4442211 112346789999
Q ss_pred cCCCC-CCCccceeeEEeecCcccccCCcccccc--cCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccc
Q psy16304 267 QTPLG-RPDSRTCQVYLIMCGVHQVSGIPDELTS--ATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG 343 (537)
Q Consensus 267 Q~~~l-~~~~~~~il~v~Ds~~~~~~~l~~~l~~--~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~ 343 (537)
|++.. +...+. .+ ++...... .............+..+|+.... ...+..|||||+||+ +
T Consensus 82 q~~~~~~~~~t~-----~~-------~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgG~~qrv----~ 144 (211)
T cd03225 82 QNPDDQFFGPTV-----EE-------EVAFGLENLGLPEEEIEERVEEALELVGLEGLR-DRSPFTLSGGQKQRV----A 144 (211)
T ss_pred cChhhhcCCCcH-----HH-------HHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhh-cCCcccCCHHHHHHH----H
Confidence 98642 222111 00 00000000 00000001112233356665433 344789999999999 9
Q ss_pred cccceeccCCceEEEEEe--cCchhhHH-----HHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCc
Q psy16304 344 FNRARVEYGNKYEVFLYD--LGGSEDFR-----TIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNC 406 (537)
Q Consensus 344 la~all~~~e~p~lllLD--T~Gl~~~~-----~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ 406 (537)
++++++. + |+++++| |+|++... ..+..+.++ +.+++++ +|+.......+ ++++++|+
T Consensus 145 laral~~-~--p~llllDEPt~~LD~~~~~~~~~~l~~~~~~-~~tvi~~-sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 145 IAGVLAM-D--PDILLLDEPTAGLDPAGRRELLELLKKLKAE-GKTIIIV-THDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred HHHHHhc-C--CCEEEEcCCcccCCHHHHHHHHHHHHHHHHc-CCEEEEE-eCCHHHHHHhCCEEEEEeCCC
Confidence 9999996 5 8999999 99994332 223333333 4566666 89988776633 77777663
No 137
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=9.6e-21 Score=194.69 Aligned_cols=219 Identities=11% Similarity=0.075 Sum_probs=136.6
Q ss_pred cccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeee
Q psy16304 153 MGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNR 232 (537)
Q Consensus 153 i~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~ 232 (537)
+.++++.+.|+...-. . ..+-..+++.+.+|++++|+|+||||||||+++|+|. ..|+.|
T Consensus 3 i~~~~l~~~y~~~~~~-~------------~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl----~~p~~G--- 62 (305)
T PRK13651 3 IKVKNIVKIFNKKLPT-E------------LKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNAL----LLPDTG--- 62 (305)
T ss_pred EEEEEEEEEECCCCCc-c------------ccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCC----CCCCCc---
Confidence 5677888877542110 0 0123345677889999999999999999999999999 999999
Q ss_pred EEEEECCcEEEE-------------EeecCCCc----hhhHHHHhhhhccccCCC--CCCCccceeeEEeecCcccccCC
Q psy16304 233 ARVEYGNKYEVF-------------LYDLGGSE----DFRTIWKQYLGTVSQTPL--GRPDSRTCQVYLIMCGVHQVSGI 293 (537)
Q Consensus 233 ~~i~i~g~~~i~-------------~~D~~G~~----~~r~~~~~~i~~v~Q~~~--l~~~~~~~il~v~Ds~~~~~~~l 293 (537)
++.++| ..+. .++..+.. .....++..++++||++. ++. .+ +.+ ++
T Consensus 63 -~i~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~t-----v~e-------~i 127 (305)
T PRK13651 63 -TIEWIF-KDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFE-QT-----IEK-------DI 127 (305)
T ss_pred -EEEEec-eecccccccccccccccccccccccccccchHHHHHhceEEEeeCccccccc-cc-----HHH-------HH
Confidence 888875 3221 11111100 011223477999999863 111 00 001 00
Q ss_pred cccccccCcCC---ccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH
Q psy16304 294 PDELTSATHLP---LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF 368 (537)
Q Consensus 294 ~~~l~~~~~l~---~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~ 368 (537)
....... ... ...+....+..+|+........+.+|||||+||+ ++|++++. + |+++++| |+|++..
T Consensus 128 ~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrv----alA~aL~~-~--P~lLlLDEPt~~LD~~ 199 (305)
T PRK13651 128 IFGPVSM-GVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRV----ALAGILAM-E--PDFLVFDEPTAGLDPQ 199 (305)
T ss_pred HhhHHHc-CCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHH----HHHHHHHh-C--CCEEEEeCCCCCCCHH
Confidence 0000000 000 0112233455677753223455899999999999 99999996 5 8999999 9999322
Q ss_pred --HHHHH---HHHhcCCEEEEEEeCCCcchhhh-hh-hhhhcCCcEEEEecccch
Q psy16304 369 --RTIWK---QYLGTVSQTLLVSHSLSGRPDDR-CQ-VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 369 --~~l~~---~~~~~~~~vIlVvdshd~~~~~~-~~-i~ll~~G~ii~~g~nkdl 416 (537)
..+++ .+.+. +.+++++ +||++.... ++ ++++++|+++..+.++++
T Consensus 200 ~~~~l~~~l~~l~~~-g~tiiiv-tHd~~~~~~~adrv~vl~~G~i~~~g~~~~~ 252 (305)
T PRK13651 200 GVKEILEIFDNLNKQ-GKTIILV-THDLDNVLEWTKRTIFFKDGKIIKDGDTYDI 252 (305)
T ss_pred HHHHHHHHHHHHHHC-CCEEEEE-eeCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 22333 33332 4566666 888876654 33 899999999998888776
No 138
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=6.7e-21 Score=192.47 Aligned_cols=214 Identities=12% Similarity=0.040 Sum_probs=134.3
Q ss_pred hhhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304 150 GILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG 229 (537)
Q Consensus 150 ~~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G 229 (537)
..++.++++.+.|+.... .+-.++++.+.+|++++|+|+||||||||+++|+|. +.|++|
T Consensus 5 ~~~l~i~~l~~~~~~~~~----------------~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl----~~~~~G 64 (269)
T PRK13648 5 NSIIVFKNVSFQYQSDAS----------------FTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGI----EKVKSG 64 (269)
T ss_pred CceEEEEEEEEEcCCCCC----------------cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC----CCCCce
Confidence 445677888887753210 012345677889999999999999999999999999 999999
Q ss_pred eeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCC-CCCCccc--eeeEEeecCcccccCCcccccccCcCCcc
Q psy16304 230 FNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL-GRPDSRT--CQVYLIMCGVHQVSGIPDELTSATHLPLV 306 (537)
Q Consensus 230 ~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~-l~~~~~~--~il~v~Ds~~~~~~~l~~~l~~~~~l~~~ 306 (537)
+|.++| ..+...+ ...++..+++++|++. .+...+. .+.+... .. ........
T Consensus 65 ----~i~~~g-~~~~~~~-------~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~-----------~~-~~~~~~~~ 120 (269)
T PRK13648 65 ----EIFYNN-QAITDDN-------FEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLE-----------NH-AVPYDEMH 120 (269)
T ss_pred ----EEEECC-EECCcCC-------HHHHHhheeEEEeChHHhcccccHHHHHHhhHH-----------hc-CCCHHHHH
Confidence 899887 4332111 1123467899999874 2222111 0000000 00 00000000
Q ss_pred ccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH--HHH---HHHHHhcC
Q psy16304 307 DFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTI---WKQYLGTV 379 (537)
Q Consensus 307 ~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l---~~~~~~~~ 379 (537)
......+..+|+.... ...+..||+||+||+ +++++++. + |+++++| |+|++.. ..+ +..+.++.
T Consensus 121 ~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrl----~laral~~-~--p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~ 192 (269)
T PRK13648 121 RRVSEALKQVDMLERA-DYEPNALSGGQKQRV----AIAGVLAL-N--PSVIILDEATSMLDPDARQNLLDLVRKVKSEH 192 (269)
T ss_pred HHHHHHHHHcCCchhh-hCCcccCCHHHHHHH----HHHHHHHc-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc
Confidence 1112223355655433 344789999999999 99999997 5 8999999 9999333 222 33333332
Q ss_pred CEEEEEEeCCCcchhhhhh-hhhhcCCcEEEEecccch
Q psy16304 380 SQTLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 380 ~~vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g~nkdl 416 (537)
+.+++++ +|+......++ ++++++|+++..+..+++
T Consensus 193 ~~tiiiv-tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 229 (269)
T PRK13648 193 NITIISI-THDLSEAMEADHVIVMNKGTVYKEGTPTEI 229 (269)
T ss_pred CCEEEEE-ecCchHHhcCCEEEEEECCEEEEecCHHHH
Confidence 4566666 77777665544 889999999988776655
No 139
>KOG0062|consensus
Probab=99.80 E-value=1.5e-20 Score=197.16 Aligned_cols=150 Identities=17% Similarity=0.152 Sum_probs=111.7
Q ss_pred cEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHHHHH-HHHHhcCCEEEEEEeC
Q psy16304 312 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRTIW-KQYLGTVSQTLLVSHS 388 (537)
Q Consensus 312 ~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~l~-~~~~~~~~~vIlVvds 388 (537)
.+..+|++.......+++||||||+|+ ++|||++. + |++++|| |++++-....| +.|+.....+++++ +
T Consensus 181 ~L~glGFt~emq~~pt~slSGGWrMrl----aLARAlf~-~--pDlLLLDEPTNhLDv~av~WLe~yL~t~~~T~liV-S 252 (582)
T KOG0062|consen 181 ILAGLGFTPEMQLQPTKSLSGGWRMRL----ALARALFA-K--PDLLLLDEPTNHLDVVAVAWLENYLQTWKITSLIV-S 252 (582)
T ss_pred HHHhCCCCHHHHhccccccCcchhhHH----HHHHHHhc-C--CCEEeecCCcccchhHHHHHHHHHHhhCCceEEEE-e
Confidence 445778877777777899999999999 99999996 5 8999999 99999888888 99999988899999 9
Q ss_pred CCcchhhhhh--hhhhcCCcEEEEecccch------------hhhhccchhhhhhhhhhHHhhccccccccCCCCCcccc
Q psy16304 389 LSGRPDDRCQ--VYLMSCNCQVYLISAKNL------------SNGFKKSERDETNISNFQIKNSSENLQDNNTSDNHDSK 454 (537)
Q Consensus 389 hd~~~~~~~~--i~ll~~G~ii~~g~nkdl------------~~~~~~~~~~~~~le~~~~~~~~~~l~~~~~~~~~~~~ 454 (537)
||+.+++.++ ++-++.-++-.+-+|.+. +.+|..+...+..++.+..+|+.+. ++
T Consensus 253 HDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fvk~k~E~~~n~qrefe~q~~~R~h~q~fid~FrYna-----------~r 321 (582)
T KOG0062|consen 253 HDRNFLNTVCTDIIHLENLKLDYYKGNYSQFVKTKPEAKKNQQREFEVQMKYRAHLQVFIDKFRYNA-----------AR 321 (582)
T ss_pred ccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHHHhhHHhhhhhhhhcchHHHHHHHHHHHHHHhccCc-----------cc
Confidence 9999999988 555556677777777642 1112222223445666667776632 34
Q ss_pred ccchhhhhccccCcCCCCCc------eeecCc
Q psy16304 455 KKQPRKRKKKVAPLNTDDET------ELSLPP 480 (537)
Q Consensus 455 ~~~~~~r~k~~~~l~~~~~~------~l~fp~ 480 (537)
+...++|.+.++.+...+.+ .+.||.
T Consensus 322 a~svqSRIk~L~kl~~lk~~~~~~~~~~~fP~ 353 (582)
T KOG0062|consen 322 ASSVQSRIKMLGKLPALKSTLIEVLIGFLFPT 353 (582)
T ss_pred chhHHHHHHHhccCCCCCccceecccceecCC
Confidence 45688999999988654432 367776
No 140
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.80 E-value=9e-21 Score=211.66 Aligned_cols=281 Identities=11% Similarity=0.028 Sum_probs=177.6
Q ss_pred cccccCCcccccccceeeeeeeccchhhhhHHHHHhhhcccccccccccccccCccccccccCCCCCCchhHHHHHHHHH
Q psy16304 67 TFANSIEPIEMVEHKMLRDVVLYNMYKAEIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAPTFEVCIVSLLVH 146 (537)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~ 146 (537)
.+.+.+.+.++++-- ..+.....|+..++..+..++.+..+++++.++++.+...++..+.... .
T Consensus 265 v~~g~lt~g~~~a~~--------~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~-------~ 329 (588)
T PRK13657 265 VQKGQLRVGEVVAFV--------GFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPPGAIDL-------G 329 (588)
T ss_pred HHcCCcCHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCCc-------C
Confidence 344566666665422 2345677899999999999999888888887777643322111110000 0
Q ss_pred HHHhhhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccC
Q psy16304 147 LMRGILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVP 226 (537)
Q Consensus 147 ~m~~~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~P 226 (537)
-....+.+++++..|++.. + +-.++++.+++|++++|+|+||+|||||+++|+|. +.|
T Consensus 330 -~~~~~I~~~~vsf~y~~~~----~-------------iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl----~~p 387 (588)
T PRK13657 330 -RVKGAVEFDDVSFSYDNSR----Q-------------GVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRV----FDP 387 (588)
T ss_pred -CCCCeEEEEEEEEEeCCCC----c-------------eecceeEEECCCCEEEEECCCCCCHHHHHHHHhcC----cCC
Confidence 0012356677777664311 0 12345677889999999999999999999999999 999
Q ss_pred ceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCC-ccceeeEEe-ecCcccccCCcccc---cccC
Q psy16304 227 TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPD-SRTCQVYLI-MCGVHQVSGIPDEL---TSAT 301 (537)
Q Consensus 227 t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~-Ds~~~~~~~l~~~l---~~~~ 301 (537)
+.| .+.++| .++..++. ..+++.+++++|++.++.. ..+++.+.- +.+.++.....+.. +++.
T Consensus 388 ~~G----~I~i~g-~~i~~~~~-------~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~ 455 (588)
T PRK13657 388 QSG----RILIDG-TDIRTVTR-------ASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIE 455 (588)
T ss_pred CCC----EEEECC-EEhhhCCH-------HHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHH
Confidence 999 999987 66654443 3344789999999998865 333333221 11111111000000 0011
Q ss_pred cCCccccCCccEE-EeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhh--HHHHHHHHH
Q psy16304 302 HLPLVDFRSVPIL-VLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSED--FRTIWKQYL 376 (537)
Q Consensus 302 ~l~~~~~~~~~L~-llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~--~~~l~~~~~ 376 (537)
.++.. +. .+|.. -..|||||+||+ ++||+++. + |++++|| |++++. ...+.+.+.
T Consensus 456 ~lp~g------ldt~i~~~-------g~~LSgGq~QRi----alARall~-~--~~iliLDEpts~LD~~t~~~i~~~l~ 515 (588)
T PRK13657 456 RKPDG------YDTVVGER-------GRQLSGGERQRL----AIARALLK-D--PPILILDEATSALDVETEAKVKAALD 515 (588)
T ss_pred hCccc------ccchhcCC-------CCCCCHHHHHHH----HHHHHHhc-C--CCEEEEeCCccCCCHHHHHHHHHHHH
Confidence 11000 00 12211 235999999999 99999997 5 8999999 999943 333334443
Q ss_pred hc-CCEEEEEEeCCCcchhhhhh-hhhhcCCcEEEEecccchh
Q psy16304 377 GT-VSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLISAKNLS 417 (537)
Q Consensus 377 ~~-~~~vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g~nkdl~ 417 (537)
+. .+.+++++ +|+......++ ++.+++|++...|+.+++.
T Consensus 516 ~~~~~~tvIii-tHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~ 557 (588)
T PRK13657 516 ELMKGRTTFII-AHRLSTVRNADRILVFDNGRVVESGSFDELV 557 (588)
T ss_pred HHhcCCEEEEE-EecHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 32 24566667 78887777666 8999999999988887774
No 141
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=6e-21 Score=194.17 Aligned_cols=214 Identities=13% Similarity=0.071 Sum_probs=136.7
Q ss_pred HhhhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCce
Q psy16304 149 RGILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTV 228 (537)
Q Consensus 149 ~~~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~ 228 (537)
.+.++.++++.+.|+... . .+-.++++.+.+|++++|+|+||||||||+++|+|. +.|+.
T Consensus 2 ~~~~l~i~~l~~~~~~~~---~-------------~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~----~~p~~ 61 (282)
T PRK13640 2 KDNIVEFKHVSFTYPDSK---K-------------PALNDISFSIPRGSWTALIGHNGSGKSTISKLINGL----LLPDD 61 (282)
T ss_pred CCceEEEEEEEEEcCCCC---c-------------cceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcc----cCCCC
Confidence 355677888888775321 0 012345677889999999999999999999999999 88987
Q ss_pred ---eeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCC-CCCCccceeeEEeecCcccccCCcccccccCcCC
Q psy16304 229 ---GFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL-GRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP 304 (537)
Q Consensus 229 ---G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~-l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~ 304 (537)
| +|.++| ..+... .. ...+..+++++|++. .+...+. . +++...... ....
T Consensus 62 g~~G----~i~i~g-~~~~~~------~~-~~~~~~ig~v~q~~~~~~~~~tv-----~-------enl~~~~~~-~~~~ 116 (282)
T PRK13640 62 NPNS----KITVDG-ITLTAK------TV-WDIREKVGIVFQNPDNQFVGATV-----G-------DDVAFGLEN-RAVP 116 (282)
T ss_pred CCCc----EEEECC-EECCcC------CH-HHHHhheEEEEECHHHhhccCCH-----H-------HHHHhhHHh-CCCC
Confidence 8 888887 433211 11 112357899999874 2222111 0 000000000 0000
Q ss_pred c---cccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-----HHHHHH
Q psy16304 305 L---VDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQ 374 (537)
Q Consensus 305 ~---~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~ 374 (537)
. ..+....+..+|+.... ...+..||+||+||+ +++++++. + |+++++| |+|++.. ...+..
T Consensus 117 ~~~~~~~~~~~l~~~~L~~~~-~~~~~~LS~G~~qrv----~laral~~-~--P~llllDEPt~gLD~~~~~~l~~~l~~ 188 (282)
T PRK13640 117 RPEMIKIVRDVLADVGMLDYI-DSEPANLSGGQKQRV----AIAGILAV-E--PKIIILDESTSMLDPAGKEQILKLIRK 188 (282)
T ss_pred HHHHHHHHHHHHHHCCChhHh-cCCcccCCHHHHHHH----HHHHHHHc-C--CCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 0 01122234456776543 445899999999999 99999997 5 8999999 9999332 233344
Q ss_pred HHhcCCEEEEEEeCCCcchhhhhh-hhhhcCCcEEEEecccch
Q psy16304 375 YLGTVSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 375 ~~~~~~~vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g~nkdl 416 (537)
+.+..+.+++++ +|+......++ ++++++|+++..+.+.++
T Consensus 189 l~~~~g~tvli~-tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 230 (282)
T PRK13640 189 LKKKNNLTVISI-THDIDEANMADQVLVLDDGKLLAQGSPVEI 230 (282)
T ss_pred HHHhcCCEEEEE-ecCHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 433324466666 78877665444 889999999998877665
No 142
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=8.8e-21 Score=190.06 Aligned_cols=195 Identities=12% Similarity=0.039 Sum_probs=123.8
Q ss_pred cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304 188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ 267 (537)
Q Consensus 188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q 267 (537)
++++.+.+|++++|+|+||||||||+++|+|. +.|++| ++.++| ..+..++. ..+...+++++|
T Consensus 20 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl----~~~~~G----~i~~~g-~~~~~~~~-------~~~~~~i~~~~q 83 (255)
T PRK11231 20 DLSLSLPTGKITALIGPNGCGKSTLLKCFARL----LTPQSG----TVFLGD-KPISMLSS-------RQLARRLALLPQ 83 (255)
T ss_pred eeeeEEcCCcEEEEECCCCCCHHHHHHHHhCC----cCCCCc----EEEECC-EEhHHCCH-------HHHhhheEEecc
Confidence 35677889999999999999999999999999 899999 888887 33221111 112356899999
Q ss_pred CCCCCCCccceeeEEeecCcccccCCcccccccCcCC--ccccCCccEEEeccCccCccchhhhhcCCCceeeecccccc
Q psy16304 268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP--LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN 345 (537)
Q Consensus 268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~--~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la 345 (537)
+..++...+. .|. ..+. ............ ........+..+|+.... ...+.+|||||+||+ +++
T Consensus 84 ~~~~~~~~tv-----~~~--i~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv----~la 150 (255)
T PRK11231 84 HHLTPEGITV-----REL--VAYG-RSPWLSLWGRLSAEDNARVNQAMEQTRINHLA-DRRLTDLSGGQRQRA----FLA 150 (255)
T ss_pred cCCCCCCccH-----HHH--HHhc-cchhhhhccCCCHHHHHHHHHHHHHcCCHHHH-cCCcccCCHHHHHHH----HHH
Confidence 9765433221 110 0000 000000000000 001122334456765443 445889999999999 999
Q ss_pred cceeccCCceEEEEEe--cCchhhH--H---HHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccch
Q psy16304 346 RARVEYGNKYEVFLYD--LGGSEDF--R---TIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 346 ~all~~~e~p~lllLD--T~Gl~~~--~---~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl 416 (537)
++++. + |+++++| |+|++.. . ..+..+.+. +.+++++ +|+.......+ ++++++|+++..+..+++
T Consensus 151 ral~~-~--p~llllDEP~~~LD~~~~~~l~~~l~~l~~~-~~tiii~-tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 225 (255)
T PRK11231 151 MVLAQ-D--TPVVLLDEPTTYLDINHQVELMRLMRELNTQ-GKTVVTV-LHDLNQASRYCDHLVVLANGHVMAQGTPEEV 225 (255)
T ss_pred HHHhc-C--CCEEEEcCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEE-ECCHHHHHHhcCEEEEEECCeEEEEcCHHHh
Confidence 99997 5 8999999 9999332 2 222333222 4566666 89988766543 889999999877665554
No 143
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=1.1e-20 Score=207.44 Aligned_cols=211 Identities=11% Similarity=0.032 Sum_probs=138.9
Q ss_pred hhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccC--ce
Q psy16304 151 ILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVP--TV 228 (537)
Q Consensus 151 ~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~P--t~ 228 (537)
.++.++++.+.|+...+. .+++|.+.+|++++|+|+||||||||+++|+|. ..| ++
T Consensus 4 ~~l~~~nl~~~~~~~~il------------------~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl----~~~~~~~ 61 (506)
T PRK13549 4 YLLEMKNITKTFGGVKAL------------------DNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGV----YPHGTYE 61 (506)
T ss_pred ceEEEeeeEEEeCCeEee------------------cceeEEEeCCeEEEEECCCCCCHHHHHHHHhCC----CCCCCCC
Confidence 457788888877643222 335677889999999999999999999999999 775 89
Q ss_pred eeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCccccccc--CcCC--
Q psy16304 229 GFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSA--THLP-- 304 (537)
Q Consensus 229 G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~--~~l~-- 304 (537)
| +|.++| ..+..+ .....++..+++++|++.+++..+.. +++...+... ....
T Consensus 62 G----~i~~~g-~~~~~~------~~~~~~~~~i~~v~q~~~~~~~~tv~------------e~l~~~~~~~~~~~~~~~ 118 (506)
T PRK13549 62 G----EIIFEG-EELQAS------NIRDTERAGIAIIHQELALVKELSVL------------ENIFLGNEITPGGIMDYD 118 (506)
T ss_pred e----EEEECC-EECCCC------CHHHHHHCCeEEEEeccccCCCCcHH------------HHhhhcccccccCCcCHH
Confidence 9 888887 443211 11122345699999997755443321 0010000000 0000
Q ss_pred -ccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH--H---HHHHHH
Q psy16304 305 -LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR--T---IWKQYL 376 (537)
Q Consensus 305 -~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~--~---l~~~~~ 376 (537)
...+....+..+|+.... ...+.+|||||+||+ ++|++++. + |++++|| |+|++... . ++..+.
T Consensus 119 ~~~~~~~~~l~~~~l~~~~-~~~~~~LSgGqkqrv----~la~al~~-~--p~lllLDEPt~~LD~~~~~~l~~~l~~l~ 190 (506)
T PRK13549 119 AMYLRAQKLLAQLKLDINP-ATPVGNLGLGQQQLV----EIAKALNK-Q--ARLLILDEPTASLTESETAVLLDIIRDLK 190 (506)
T ss_pred HHHHHHHHHHHHcCCCCCc-ccchhhCCHHHHHHH----HHHHHHhc-C--CCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Confidence 001122334466776543 455899999999999 99999996 5 8999999 99994332 2 223433
Q ss_pred hcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccch
Q psy16304 377 GTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 377 ~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl 416 (537)
+ .+.+++++ +|+.......+ ++++++|+++..+...++
T Consensus 191 ~-~~~tvi~~-tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 191 A-HGIACIYI-SHKLNEVKAISDTICVIRDGRHIGTRPAAGM 230 (506)
T ss_pred H-CCCEEEEE-eCcHHHHHHhcCEEEEEECCEEeeecccccC
Confidence 3 24566676 89988876543 899999999888877655
No 144
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=8.6e-21 Score=193.83 Aligned_cols=197 Identities=14% Similarity=0.095 Sum_probs=127.2
Q ss_pred ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304 187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS 266 (537)
Q Consensus 187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~ 266 (537)
.++++.+.+|++++|+|+||||||||+++|+|. ..|+.| +|.++| ..+..... .......+..++++|
T Consensus 24 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~p~~G----~i~~~g-~~i~~~~~---~~~~~~~~~~ig~v~ 91 (290)
T PRK13634 24 YDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGL----LQPTSG----TVTIGE-RVITAGKK---NKKLKPLRKKVGIVF 91 (290)
T ss_pred eeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcC----CCCCCc----EEEECC-EECccccc---cchHHHHHhhEEEEe
Confidence 456678889999999999999999999999999 999999 999987 44321100 001122336799999
Q ss_pred cCCC--CCCCccceeeEEeecCcccccCCccccc--ccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccc
Q psy16304 267 QTPL--GRPDSRTCQVYLIMCGVHQVSGIPDELT--SATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTV 342 (537)
Q Consensus 267 Q~~~--l~~~~~~~il~v~Ds~~~~~~~l~~~l~--~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti 342 (537)
|++. ++. .+. .+ ++..... ..............+..+|+........+.+|||||+||+
T Consensus 92 q~~~~~l~~-~tv-----~e-------ni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv---- 154 (290)
T PRK13634 92 QFPEHQLFE-ETV-----EK-------DICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRV---- 154 (290)
T ss_pred eCchhhhhh-hhH-----HH-------HHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHH----
Confidence 9863 221 111 00 0000000 0000000012233344677753222445899999999999
Q ss_pred ccccceeccCCceEEEEEe--cCchhhHH--H---HHHHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEecc
Q psy16304 343 GFNRARVEYGNKYEVFLYD--LGGSEDFR--T---IWKQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLISA 413 (537)
Q Consensus 343 ~la~all~~~e~p~lllLD--T~Gl~~~~--~---l~~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~n 413 (537)
+++++++. + |+++++| |+|++... . ++..+.++.+.+|+++ +|+....... + ++++++|+++..+..
T Consensus 155 ~lAraL~~-~--P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviii-tHd~~~~~~~~drv~~l~~G~i~~~g~~ 230 (290)
T PRK13634 155 AIAGVLAM-E--PEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLV-THSMEDAARYADQIVVMHKGTVFLQGTP 230 (290)
T ss_pred HHHHHHHc-C--CCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 99999996 5 8999999 99993332 2 2334434334567777 8998876543 3 899999999988876
Q ss_pred cch
Q psy16304 414 KNL 416 (537)
Q Consensus 414 kdl 416 (537)
.++
T Consensus 231 ~~~ 233 (290)
T PRK13634 231 REI 233 (290)
T ss_pred HHH
Confidence 665
No 145
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.79 E-value=9.2e-21 Score=191.29 Aligned_cols=220 Identities=16% Similarity=0.079 Sum_probs=135.6
Q ss_pred hhcccccCCCcccCCCCCC-CCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304 151 ILMGIQNVPNFQTSSVLSD-DPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG 229 (537)
Q Consensus 151 ~li~~~~l~k~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G 229 (537)
.++.++++.+.|+...-.. ... ..+-.++++.+.+|++++|+|+||||||||+++|+|. +.|++|
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~~----------~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl----~~p~~G 68 (267)
T PRK15112 3 TLLEVRNLSKTFRYRTGWFRRQT----------VEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGM----IEPTSG 68 (267)
T ss_pred ceEEEeceEEEecCCCCcccccc----------cceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCC----CCCCCC
Confidence 3567888888875321000 000 0123455678889999999999999999999999999 999999
Q ss_pred eeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCC--CCCCccceeeEEeecCcccccCCccccc---ccCcCC
Q psy16304 230 FNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL--GRPDSRTCQVYLIMCGVHQVSGIPDELT---SATHLP 304 (537)
Q Consensus 230 ~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~--l~~~~~~~il~v~Ds~~~~~~~l~~~l~---~~~~l~ 304 (537)
+|.++| ..+.... .......+++++|++. +++..+. .+ .+...+. ......
T Consensus 69 ----~i~~~g-~~~~~~~-------~~~~~~~i~~v~q~~~~~~~~~~tv-----~~-------~l~~~~~~~~~~~~~~ 124 (267)
T PRK15112 69 ----ELLIDD-HPLHFGD-------YSYRSQRIRMIFQDPSTSLNPRQRI-----SQ-------ILDFPLRLNTDLEPEQ 124 (267)
T ss_pred ----EEEECC-EECCCCc-------hhhHhccEEEEecCchhhcCcchhH-----HH-------HHHHHHHhccCCCHHH
Confidence 999887 4432110 1122356899999864 1211111 00 0000000 000000
Q ss_pred ccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH--HH---HHHHHh
Q psy16304 305 LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR--TI---WKQYLG 377 (537)
Q Consensus 305 ~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~--~l---~~~~~~ 377 (537)
........+..+|+........+.+||+||+||+ +++++++. + |++++|| |+|++... .+ +.++.+
T Consensus 125 ~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv----~laral~~-~--p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 197 (267)
T PRK15112 125 REKQIIETLRQVGLLPDHASYYPHMLAPGQKQRL----GLARALIL-R--PKVIIADEALASLDMSMRSQLINLMLELQE 197 (267)
T ss_pred HHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHH----HHHHHHHh-C--CCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 0011223344566632223445789999999999 99999996 5 8999999 99994332 22 233333
Q ss_pred cCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEecccch
Q psy16304 378 TVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 378 ~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~nkdl 416 (537)
+.+.+++++ +|+....... + ++++++|+++..+...++
T Consensus 198 ~~g~tviiv-sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 237 (267)
T PRK15112 198 KQGISYIYV-TQHLGMMKHISDQVLVMHQGEVVERGSTADV 237 (267)
T ss_pred HcCcEEEEE-eCCHHHHHHhcCEEEEEECCEEEecCCHHHH
Confidence 334567777 8888877653 3 888999999877766555
No 146
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.79 E-value=2.5e-20 Score=176.74 Aligned_cols=215 Identities=14% Similarity=0.126 Sum_probs=139.0
Q ss_pred hhhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCc--
Q psy16304 150 GILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPT-- 227 (537)
Q Consensus 150 ~~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt-- 227 (537)
...+.++++..+||......+ +++.+.++.+.+|+||+||||||||++|... ....
T Consensus 5 ~~~~~~~~l~~yYg~~~aL~~------------------i~l~i~~~~VTAlIGPSGcGKST~LR~lNRm----ndl~~~ 62 (253)
T COG1117 5 IPAIEVRDLNLYYGDKHALKD------------------INLDIPKNKVTALIGPSGCGKSTLLRCLNRM----NDLIPG 62 (253)
T ss_pred cceeEecceeEEECchhhhcc------------------CceeccCCceEEEECCCCcCHHHHHHHHHhh----cccCcC
Confidence 345677889999887665555 3466779999999999999999999999987 4433
Q ss_pred ---eeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCC-ccceeeEEeecCcccccCCcccccccCcC
Q psy16304 228 ---VGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPD-SRTCQVYLIMCGVHQVSGIPDELTSATHL 303 (537)
Q Consensus 228 ---~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~Ds~~~~~~~l~~~l~~~~~l 303 (537)
.| +|.++| .++..++. . -..+++.+|+|||.+..|+. ..+++.+..- ...+.. ..+
T Consensus 63 ~r~~G----~v~~~g-~ni~~~~~---d--~~~lRr~vGMVFQkPnPFp~SIydNVayG~r-----~~g~~~--~~l--- 122 (253)
T COG1117 63 ARVEG----EVLLDG-KNIYDPKV---D--VVELRRRVGMVFQKPNPFPMSIYDNVAYGLR-----LHGIKD--KEL--- 122 (253)
T ss_pred ceEEE----EEEECC-eeccCCCC---C--HHHHHHHheeeccCCCCCCchHHHHHHHhHH-----hhccch--HHH---
Confidence 46 888886 55544322 1 12334889999999997763 2222222111 000110 000
Q ss_pred CccccCCccEEEeccCccCccch---hhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHHHHH-HHHHh
Q psy16304 304 PLVDFRSVPILVLGLDNAGKSSI---IKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRTIW-KQYLG 377 (537)
Q Consensus 304 ~~~~~~~~~L~llGl~~~gKs~l---i~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~l~-~~~~~ 377 (537)
....+..+...++++.-|+.+ ...|||||+||+ .+||++.. + |+++++| |+.++-+...- +++..
T Consensus 123 --deiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRL----cIARalAv-~--PeVlLmDEPtSALDPIsT~kIEeLi~ 193 (253)
T COG1117 123 --DEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRL----CIARALAV-K--PEVLLMDEPTSALDPISTLKIEELIT 193 (253)
T ss_pred --HHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHH----HHHHHHhc-C--CcEEEecCcccccCchhHHHHHHHHH
Confidence 001111222233333322222 456999999999 99999987 5 8999999 88885443322 33322
Q ss_pred c--CCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccch
Q psy16304 378 T--VSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 378 ~--~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl 416 (537)
+ .+-+|+++ +|++.-+..+. .+++..|+++.++..+.+
T Consensus 194 eLk~~yTIviV-THnmqQAaRvSD~taFf~~G~LvE~g~T~~i 235 (253)
T COG1117 194 ELKKKYTIVIV-THNMQQAARVSDYTAFFYLGELVEFGPTDKI 235 (253)
T ss_pred HHHhccEEEEE-eCCHHHHHHHhHhhhhhcccEEEEEcCHHhh
Confidence 1 34466666 78888777665 899999999999988877
No 147
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.79 E-value=1.4e-20 Score=206.29 Aligned_cols=210 Identities=12% Similarity=0.068 Sum_probs=139.0
Q ss_pred hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304 152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN 231 (537)
Q Consensus 152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t 231 (537)
++.++++.+.|+...+. .++++.+.+|++++|+||||||||||+++|+|. ..|++|
T Consensus 4 ~i~~~~l~~~~~~~~~l------------------~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~----~~p~~G-- 59 (501)
T PRK10762 4 LLQLKGIDKAFPGVKAL------------------SGAALNVYPGRVMALVGENGAGKSTMMKVLTGI----YTRDAG-- 59 (501)
T ss_pred eEEEeeeEEEeCCeEEe------------------eeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCC----CCCCCc--
Confidence 56788888877543222 234677889999999999999999999999999 999999
Q ss_pred eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccc---cCcCC---c
Q psy16304 232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTS---ATHLP---L 305 (537)
Q Consensus 232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~---~~~l~---~ 305 (537)
+|.++| ..+... .. ....+..+++++|++.+++..+.. +++...... ...+. .
T Consensus 60 --~i~~~g-~~~~~~-----~~-~~~~~~~i~~v~q~~~~~~~~tv~------------e~l~~~~~~~~~~~~~~~~~~ 118 (501)
T PRK10762 60 --SILYLG-KEVTFN-----GP-KSSQEAGIGIIHQELNLIPQLTIA------------ENIFLGREFVNRFGRIDWKKM 118 (501)
T ss_pred --EEEECC-EECCCC-----CH-HHHHhCCEEEEEcchhccCCCcHH------------HHhhhccccccccCccCHHHH
Confidence 888887 433211 11 112235689999997655443221 001000000 00000 0
Q ss_pred cccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH--HHH---HHHHHhc
Q psy16304 306 VDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTI---WKQYLGT 378 (537)
Q Consensus 306 ~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l---~~~~~~~ 378 (537)
..+....+..+|+.... ...+.+|||||+||+ +++++++. + |++++|| |+|++.. ..+ +..+.+
T Consensus 119 ~~~~~~~l~~~~l~~~~-~~~~~~LSgG~~qrv----~la~al~~-~--p~lllLDEPt~~LD~~~~~~l~~~l~~l~~- 189 (501)
T PRK10762 119 YAEADKLLARLNLRFSS-DKLVGELSIGEQQMV----EIAKVLSF-E--SKVIIMDEPTDALTDTETESLFRVIRELKS- 189 (501)
T ss_pred HHHHHHHHHHcCCCCCc-cCchhhCCHHHHHHH----HHHHHHhc-C--CCEEEEeCCcCCCCHHHHHHHHHHHHHHHH-
Confidence 01122334567776554 455899999999999 99999996 5 8999999 9999433 222 234433
Q ss_pred CCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccch
Q psy16304 379 VSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 379 ~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl 416 (537)
.+.+++++ +||.......+ ++++++|+++..+..+++
T Consensus 190 ~~~tvii~-sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (501)
T PRK10762 190 QGRGIVYI-SHRLKEIFEICDDVTVFRDGQFIAEREVADL 228 (501)
T ss_pred CCCEEEEE-eCCHHHHHHhCCEEEEEeCCEEEEecCcCcC
Confidence 34566666 89988876544 899999999888776654
No 148
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=7.4e-21 Score=190.78 Aligned_cols=183 Identities=17% Similarity=0.168 Sum_probs=119.9
Q ss_pred cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304 188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ 267 (537)
Q Consensus 188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q 267 (537)
++++.+.+|++++|+|+||||||||+++|+|. ..|++| +|.++| .++. . .. ..+++++|
T Consensus 19 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~p~~G----~i~~~g-~~~~-----~---~~----~~~~~v~q 77 (255)
T PRK11248 19 DINLTLESGELLVVLGPSGCGKTTLLNLIAGF----VPYQHG----SITLDG-KPVE-----G---PG----AERGVVFQ 77 (255)
T ss_pred eeeEEECCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCc----EEEECC-EECC-----C---CC----CcEEEEeC
Confidence 45677889999999999999999999999999 999999 888887 4331 1 11 23788999
Q ss_pred CCCCCCCccceeeEEeecCcccccCCcccccccCcCC---ccccCCccEEEeccCccCccchhhhhcCCCceeeeccccc
Q psy16304 268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF 344 (537)
Q Consensus 268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~l 344 (537)
++.+++..+.. +++..... ..... ...+....+..+|+.... ...+.+|||||+||+ ++
T Consensus 78 ~~~~~~~~tv~------------e~l~~~~~-~~~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~LSgGq~qrl----~l 139 (255)
T PRK11248 78 NEGLLPWRNVQ------------DNVAFGLQ-LAGVEKMQRLEIAHQMLKKVGLEGAE-KRYIWQLSGGQRQRV----GI 139 (255)
T ss_pred CCccCCCCcHH------------HHHHhHHH-HcCCCHHHHHHHHHHHHHHcCChhHh-hCChhhCCHHHHHHH----HH
Confidence 87655432220 00000000 00000 001122334466776543 345899999999999 99
Q ss_pred ccceeccCCceEEEEEe--cCchhhH--HHHH---HHHHhcCCEEEEEEeCCCcchhhhhh--hhhhc--CCcEEEEecc
Q psy16304 345 NRARVEYGNKYEVFLYD--LGGSEDF--RTIW---KQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMS--CNCQVYLISA 413 (537)
Q Consensus 345 a~all~~~e~p~lllLD--T~Gl~~~--~~l~---~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~--~G~ii~~g~n 413 (537)
+++++. + |+++++| |+|++.. ..++ ..+.+..+.+++++ +|+.......+ +++++ +|+++..+..
T Consensus 140 aral~~-~--p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviiv-sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 140 ARALAA-N--PQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLI-THDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred HHHHhc-C--CCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 999996 5 8999999 9999332 2222 33323334566777 89988776544 77887 5888776554
No 149
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.3e-20 Score=199.02 Aligned_cols=254 Identities=14% Similarity=0.119 Sum_probs=166.7
Q ss_pred hcccccccccccccccCccccccccCCCCCCchhHHHHHHHHHHHHhhhcccccCCCcccCCCCCCCCCcchhhcccccc
Q psy16304 104 KNIHNIACKDMNMQNVPNFQTSSVLSDDPAPTFEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRV 183 (537)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~ 183 (537)
.++..+.+-.++..|+.++.+++.....|.++++. .+..+.++|++..|.+.+.
T Consensus 298 ~A~~~lgq~~~Sa~Rl~~i~~q~~e~~~~~~~~~~----------~~~~l~~~~vsF~y~~~~~---------------- 351 (573)
T COG4987 298 GAFQHLGQVIASARRLNDILDQKPEVTFPDEQTAT----------TGQALELRNVSFTYPGQQT---------------- 351 (573)
T ss_pred hhHHHhhHHHHHHHHHhhhccCCcccCCCccccCC----------ccceeeeccceeecCCCcc----------------
Confidence 44555556667777888887766655444222222 0115567777776654331
Q ss_pred cccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhh
Q psy16304 184 LLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLG 263 (537)
Q Consensus 184 ~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~ 263 (537)
.+-.+++|.+++||+++|+|++|||||||+..|.|. +.|++| ++..+| .++.-++. .-+++.++
T Consensus 352 ~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~----~~~~~G----~i~~~g-~~~~~l~~-------~~~~e~i~ 415 (573)
T COG4987 352 KALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGA----WDPQQG----SITLNG-VEIASLDE-------QALRETIS 415 (573)
T ss_pred chhhccceeecCCCeEEEECCCCCCHHHHHHHHHhc----cCCCCC----eeeECC-cChhhCCh-------hhHHHHHh
Confidence 123456688999999999999999999999999999 999999 898887 55544443 22347899
Q ss_pred ccccCCCCCCC-ccceeeEEee-cCcccccCCcccccccCcCCcc--ccCCccEEEeccCccCccchhhhhcCCCceeee
Q psy16304 264 TVSQTPLGRPD-SRTCQVYLIM-CGVHQVSGIPDELTSATHLPLV--DFRSVPILVLGLDNAGKSSIIKRILGEPIISLV 339 (537)
Q Consensus 264 ~v~Q~~~l~~~-~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~--~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs 339 (537)
++.|...+|.. ..+++.+.-. ++.+ ++++.++..+ +... ...+-.-..+|..+. .|||||++|+
T Consensus 416 vl~Qr~hlF~~Tlr~NL~lA~~~AsDE---el~~aL~qvg-L~~l~~~~p~gl~t~lge~G~-------~LSGGE~rRL- 483 (573)
T COG4987 416 VLTQRVHLFSGTLRDNLRLANPDASDE---ELWAALQQVG-LEKLLESAPDGLNTWLGEGGR-------RLSGGERRRL- 483 (573)
T ss_pred hhccchHHHHHHHHHHHhhcCCCCCHH---HHHHHHHHcC-HHHHHHhChhhhhchhccCCC-------cCCchHHHHH-
Confidence 99999887765 3333322111 1111 1222222111 1000 011111224554443 3999999999
Q ss_pred cccccccceeccCCceEEEEEe--cCchhh--HHHHHHHHHhcC-CEEEEEEeCCCcchhhhhh-hhhhcCCcEEEEecc
Q psy16304 340 PTVGFNRARVEYGNKYEVFLYD--LGGSED--FRTIWKQYLGTV-SQTLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLISA 413 (537)
Q Consensus 340 ~ti~la~all~~~e~p~lllLD--T~Gl~~--~~~l~~~~~~~~-~~vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g~n 413 (537)
++||.+++ + .++.+|| |.|++. .+++.+.+.+.. +.+++++ +|.....+.++ ++++++|+++..|.+
T Consensus 484 ---AlAR~LL~-d--apl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~v-THrL~~le~~drIivl~~Gkiie~G~~ 556 (573)
T COG4987 484 ---ALARALLH-D--APLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMV-THRLRGLERMDRIIVLDNGKIIEEGTH 556 (573)
T ss_pred ---HHHHHHHc-C--CCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEE-ecccccHhhcCEEEEEECCeeeecCCH
Confidence 99999998 6 7999999 999943 344555555443 4467777 78888888777 999999999999998
Q ss_pred cchhh
Q psy16304 414 KNLSN 418 (537)
Q Consensus 414 kdl~~ 418 (537)
.++..
T Consensus 557 ~~Ll~ 561 (573)
T COG4987 557 AELLA 561 (573)
T ss_pred Hhhhc
Confidence 88753
No 150
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=6.8e-21 Score=185.30 Aligned_cols=183 Identities=14% Similarity=0.115 Sum_probs=119.7
Q ss_pred ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304 187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS 266 (537)
Q Consensus 187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~ 266 (537)
.++++.+.+| +++|+|+||||||||+++|+|. +.|++| ++.++| ..+... . ..++..+++++
T Consensus 17 ~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl----~~~~~G----~i~~~g-~~~~~~-----~---~~~~~~i~~~~ 78 (211)
T cd03264 17 DGVSLTLGPG-MYGLLGPNGAGKTTLMRILATL----TPPSSG----TIRIDG-QDVLKQ-----P---QKLRRRIGYLP 78 (211)
T ss_pred cceeEEEcCC-cEEEECCCCCCHHHHHHHHhCC----CCCCcc----EEEECC-Cccccc-----h---HHHHhheEEec
Confidence 3456778789 9999999999999999999999 999999 888887 333211 1 12346789999
Q ss_pred cCCCCCCCccceeeEEeecCcccccCCccc--ccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccccc
Q psy16304 267 QTPLGRPDSRTCQVYLIMCGVHQVSGIPDE--LTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF 344 (537)
Q Consensus 267 Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~--l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~l 344 (537)
|++.++...+.. + ++... +...............+..+|+.... ...+.+|||||+||+ ++
T Consensus 79 q~~~~~~~~tv~-----~-------~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv----~l 141 (211)
T cd03264 79 QEFGVYPNFTVR-----E-------FLDYIAWLKGIPSKEVKARVDEVLELVNLGDRA-KKKIGSLSGGMRRRV----GI 141 (211)
T ss_pred CCCcccccCCHH-----H-------HHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHH-hCchhhCCHHHHHHH----HH
Confidence 998765432220 0 00000 00000000001112234456665443 445899999999999 99
Q ss_pred ccceeccCCceEEEEEe--cCchhhHHH-----HHHHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEE
Q psy16304 345 NRARVEYGNKYEVFLYD--LGGSEDFRT-----IWKQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYL 410 (537)
Q Consensus 345 a~all~~~e~p~lllLD--T~Gl~~~~~-----l~~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~ 410 (537)
+++++. + |+++++| |+|++.... .++.+.+ +.+++++ +|+....... + ++++++|+++..
T Consensus 142 a~al~~-~--p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~v-sH~~~~~~~~~d~i~~l~~g~i~~~ 210 (211)
T cd03264 142 AQALVG-D--PSILIVDEPTAGLDPEERIRFRNLLSELGE--DRIVILS-THIVEDVESLCNQVAVLNKGKLVFE 210 (211)
T ss_pred HHHHhc-C--CCEEEEcCCcccCCHHHHHHHHHHHHHHhC--CCEEEEE-cCCHHHHHHhCCEEEEEECCEEEec
Confidence 999996 5 8999999 999943322 2333332 3667777 8998887643 3 888999987653
No 151
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=8.7e-21 Score=192.72 Aligned_cols=212 Identities=12% Similarity=0.078 Sum_probs=136.8
Q ss_pred hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304 152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN 231 (537)
Q Consensus 152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t 231 (537)
++.++++++.|+... . ..+-.++++.+.+|++++|+|+||||||||+++|+|. +.|+.|
T Consensus 4 ~l~~~~l~~~~~~~~----~-----------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~p~~G-- 62 (279)
T PRK13650 4 IIEVKNLTFKYKEDQ----E-----------KYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGL----LEAESG-- 62 (279)
T ss_pred eEEEEeEEEEcCCCC----c-----------CeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC----CCCCCc--
Confidence 466788888775321 0 0022345677889999999999999999999999999 999999
Q ss_pred eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCC-CCCCccceeeEEeecCcccccCCcccccccCcCC---ccc
Q psy16304 232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL-GRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVD 307 (537)
Q Consensus 232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~-l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~ 307 (537)
+|.++| ..+... ... ..+..+++++|++. .+...+. .+ ++....... +.. ...
T Consensus 63 --~i~~~g-~~i~~~---~~~----~~~~~i~~v~q~~~~~~~~~tv-----~e-------ni~~~~~~~-~~~~~~~~~ 119 (279)
T PRK13650 63 --QIIIDG-DLLTEE---NVW----DIRHKIGMVFQNPDNQFVGATV-----ED-------DVAFGLENK-GIPHEEMKE 119 (279)
T ss_pred --EEEECC-EECCcC---cHH----HHHhhceEEEcChHHhcccccH-----HH-------HHHhhHHhC-CCCHHHHHH
Confidence 999887 443211 111 12367999999863 2222111 00 000000000 000 001
Q ss_pred cCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH--HHHH---HHHHhcCC
Q psy16304 308 FRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIW---KQYLGTVS 380 (537)
Q Consensus 308 ~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l~---~~~~~~~~ 380 (537)
+....+..+|+.+.. ...+.+|||||+||+ +++++++. + |+++++| |+|++.. ..++ ..+.++.+
T Consensus 120 ~~~~~l~~~gL~~~~-~~~~~~LSgGq~qrv----~lAral~~-~--p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g 191 (279)
T PRK13650 120 RVNEALELVGMQDFK-EREPARLSGGQKQRV----AIAGAVAM-R--PKIIILDEATSMLDPEGRLELIKTIKGIRDDYQ 191 (279)
T ss_pred HHHHHHHHCCCHhHh-hCCcccCCHHHHHHH----HHHHHHHc-C--CCEEEEECCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 122334466776543 455889999999999 99999997 5 8999999 9999322 2233 34433334
Q ss_pred EEEEEEeCCCcchhhhhh-hhhhcCCcEEEEecccch
Q psy16304 381 QTLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 381 ~vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g~nkdl 416 (537)
.+++++ +|+......++ ++++++|+++..+...++
T Consensus 192 ~tiliv-tH~~~~~~~~dri~~l~~G~i~~~g~~~~~ 227 (279)
T PRK13650 192 MTVISI-THDLDEVALSDRVLVMKNGQVESTSTPREL 227 (279)
T ss_pred CEEEEE-ecCHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 566666 78877765444 899999999888877665
No 152
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=1.3e-20 Score=187.16 Aligned_cols=197 Identities=15% Similarity=0.088 Sum_probs=125.1
Q ss_pred cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304 188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ 267 (537)
Q Consensus 188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q 267 (537)
++++.+.+|++++|+|+||||||||+++|+|. ..|++| +|.++| ..+....... ......++..+++++|
T Consensus 20 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~----~~~~~G----~i~~~g-~~~~~~~~~~-~~~~~~~~~~i~~~~q 89 (242)
T PRK11124 20 DITLDCPQGETLVLLGPSGAGKSSLLRVLNLL----EMPRSG----TLNIAG-NHFDFSKTPS-DKAIRELRRNVGMVFQ 89 (242)
T ss_pred eeeeEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCce----EEEECC-Eecccccccc-hhhHHHHHhheEEEec
Confidence 45677889999999999999999999999999 899999 899887 4331110000 0011223367899999
Q ss_pred CCCCCCCccceeeEEeecCcccccCCcc-cccccCcC--CccccCCccEEEeccCccCccchhhhhcCCCceeeeccccc
Q psy16304 268 TPLGRPDSRTCQVYLIMCGVHQVSGIPD-ELTSATHL--PLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF 344 (537)
Q Consensus 268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~-~l~~~~~l--~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~l 344 (537)
++.++...+.. +++.. ........ .........+..+|+.... ...+..|||||+||+ ++
T Consensus 90 ~~~~~~~~tv~------------e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~LS~G~~qrv----~l 152 (242)
T PRK11124 90 QYNLWPHLTVQ------------QNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYA-DRFPLHLSGGQQQRV----AI 152 (242)
T ss_pred CccccCCCcHH------------HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhh-hCChhhCCHHHHHHH----HH
Confidence 98765443220 00000 00000000 0001112233456765443 445889999999999 99
Q ss_pred ccceeccCCceEEEEEe--cCchhhHHH--H---HHHHHhcCCEEEEEEeCCCcchhhh-hh-hhhhcCCcEEEEecccc
Q psy16304 345 NRARVEYGNKYEVFLYD--LGGSEDFRT--I---WKQYLGTVSQTLLVSHSLSGRPDDR-CQ-VYLMSCNCQVYLISAKN 415 (537)
Q Consensus 345 a~all~~~e~p~lllLD--T~Gl~~~~~--l---~~~~~~~~~~vIlVvdshd~~~~~~-~~-i~ll~~G~ii~~g~nkd 415 (537)
+++++. + |+++++| |+|++.... + +..+.+ .+.+++++ +|+...... ++ ++++++|+++..+...+
T Consensus 153 aral~~-~--p~llilDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~-sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 227 (242)
T PRK11124 153 ARALMM-E--PQVLLFDEPTAALDPEITAQIVSIIRELAE-TGITQVIV-THEVEVARKTASRVVYMENGHIVEQGDASC 227 (242)
T ss_pred HHHHhc-C--CCEEEEcCCCCcCCHHHHHHHHHHHHHHHH-cCCEEEEE-eCCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 999996 5 8999999 999943322 2 233322 24566666 888887754 33 88899999987765544
Q ss_pred h
Q psy16304 416 L 416 (537)
Q Consensus 416 l 416 (537)
+
T Consensus 228 ~ 228 (242)
T PRK11124 228 F 228 (242)
T ss_pred h
Confidence 3
No 153
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=2.4e-20 Score=181.48 Aligned_cols=183 Identities=16% Similarity=0.115 Sum_probs=120.5
Q ss_pred cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304 188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ 267 (537)
Q Consensus 188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q 267 (537)
++++.+.+|++++|+|+||||||||+++|+|. +.|++| ++.++| ..+..+ ... +..+++++|
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl----~~~~~G----~i~~~g-~~~~~~-----~~~----~~~i~~~~q 77 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGF----ETPQSG----RVLING-VDVTAA-----PPA----DRPVSMLFQ 77 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCc----eEEECC-EEcCcC-----CHh----HccEEEEec
Confidence 34677889999999999999999999999999 999999 888887 443211 111 256899999
Q ss_pred CCCCCCCccc--eeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccc
Q psy16304 268 TPLGRPDSRT--CQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN 345 (537)
Q Consensus 268 ~~~l~~~~~~--~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la 345 (537)
++.+++..+. .+.+... .... ... ....+....+..+|+.... ...+.+||+||+||+ +++
T Consensus 78 ~~~~~~~~tv~enl~~~~~----------~~~~-~~~-~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv----~ia 140 (211)
T cd03298 78 ENNLFAHLTVEQNVGLGLS----------PGLK-LTA-EDRQAIEVALARVGLAGLE-KRLPGELSGGERQRV----ALA 140 (211)
T ss_pred ccccCCCCcHHHHHhcccc----------cccC-ccH-HHHHHHHHHHHHcCCHHHH-hCCcccCCHHHHHHH----HHH
Confidence 9876544222 1100000 0000 000 0011122334456665443 445889999999999 999
Q ss_pred cceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEE
Q psy16304 346 RARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVY 409 (537)
Q Consensus 346 ~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~ 409 (537)
++++. + |+++++| |+|++.. ...+..+.++.+.+++++ +|+....... + ++++++|+++.
T Consensus 141 ~al~~-~--p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~-sH~~~~~~~~~d~i~~l~~G~i~~ 209 (211)
T cd03298 141 RVLVR-D--KPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMV-THQPEDAKRLAQRVVFLDNGRIAA 209 (211)
T ss_pred HHHhc-C--CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE-ecCHHHHHhhhCEEEEEECCEEee
Confidence 99996 5 8999999 9998332 223333333334567777 8998877653 3 88899998764
No 154
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.79 E-value=1.2e-20 Score=209.69 Aligned_cols=280 Identities=15% Similarity=0.062 Sum_probs=175.4
Q ss_pred ccccCCcccccccceeeeeeeccchhhhhHHHHHhhhcccccccccccccccCccccccccCCCCCCchhHHHHHHHHHH
Q psy16304 68 FANSIEPIEMVEHKMLRDVVLYNMYKAEIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAPTFEVCIVSLLVHL 147 (537)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~ 147 (537)
+.+.+.+-++++=. -.+...++|+..+...+.+++....+++++.++++.+...+....+.+-
T Consensus 264 ~~g~lt~g~l~a~~--------~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~--------- 326 (571)
T TIGR02203 264 QAGSLTAGDFTAFI--------TAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGTRAIER--------- 326 (571)
T ss_pred HcCCCCHhHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCC---------
Confidence 34555555554432 2345568999999999999999999999998888744332111100000
Q ss_pred HHhhhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCc
Q psy16304 148 MRGILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPT 227 (537)
Q Consensus 148 m~~~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt 227 (537)
...-+.+++++..|++.. . ..-.++++.+++|++++|+|+||+|||||+++|+|. +.|+
T Consensus 327 -~~~~i~~~~v~f~y~~~~---~-------------~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl----~~~~ 385 (571)
T TIGR02203 327 -ARGDVEFRNVTFRYPGRD---R-------------PALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRF----YEPD 385 (571)
T ss_pred -CCCeEEEEEEEEEcCCCC---C-------------ccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhc----cCCC
Confidence 011245666666553211 0 112346678889999999999999999999999999 9999
Q ss_pred eeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCC-ccceeeEEe--ecCcccccCCcccc---cccC
Q psy16304 228 VGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPD-SRTCQVYLI--MCGVHQVSGIPDEL---TSAT 301 (537)
Q Consensus 228 ~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~--Ds~~~~~~~l~~~l---~~~~ 301 (537)
.| +|.++| .++..++. ..+++.+++++|++.++.. ..+++.+.- +.+.++..++.+.. +.+.
T Consensus 386 ~G----~I~i~g-~~i~~~~~-------~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~ 453 (571)
T TIGR02203 386 SG----QILLDG-HDLADYTL-------ASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVD 453 (571)
T ss_pred CC----eEEECC-EeHHhcCH-------HHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHH
Confidence 99 999987 65544433 2234789999999998765 333332211 11111111110000 0011
Q ss_pred cCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHHH--HHHHHHh
Q psy16304 302 HLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRT--IWKQYLG 377 (537)
Q Consensus 302 ~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~--l~~~~~~ 377 (537)
+++...+ ..+|.. -..|||||+||+ +++|+++. + |++++|| |++++.... +.+.+.+
T Consensus 454 ~lp~gld-----t~i~~~-------g~~LSgGqrQRi----aLARall~-~--~~illLDEpts~LD~~~~~~i~~~L~~ 514 (571)
T TIGR02203 454 KLPLGLD-----TPIGEN-------GVLLSGGQRQRL----AIARALLK-D--APILILDEATSALDNESERLVQAALER 514 (571)
T ss_pred hCcCccc-----ceecCC-------CCcCCHHHHHHH----HHHHHHhc-C--CCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 1110000 022222 234999999999 99999996 5 8999999 999943332 3333333
Q ss_pred c-CCEEEEEEeCCCcchhhhhh-hhhhcCCcEEEEecccchh
Q psy16304 378 T-VSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLISAKNLS 417 (537)
Q Consensus 378 ~-~~~vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g~nkdl~ 417 (537)
. .+.+++++ +|+......++ ++.+++|++...|+..++.
T Consensus 515 ~~~~~tiIii-tH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~ 555 (571)
T TIGR02203 515 LMQGRTTLVI-AHRLSTIEKADRIVVMDDGRIVERGTHNELL 555 (571)
T ss_pred HhCCCEEEEE-ehhhHHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 2 23466666 78877766665 8889999999888887763
No 155
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.79 E-value=8.9e-21 Score=186.59 Aligned_cols=197 Identities=17% Similarity=0.157 Sum_probs=122.6
Q ss_pred hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304 152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN 231 (537)
Q Consensus 152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t 231 (537)
++.++++.+.|+...+. .++++.+.+|++++|+|+||||||||+++|+|. ..|++|
T Consensus 7 ~i~~~~l~~~~~~~~il------------------~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~----~~~~~G-- 62 (225)
T PRK10247 7 LLQLQNVGYLAGDAKIL------------------NNISFSLRAGEFKLITGPSGCGKSTLLKIVASL----ISPTSG-- 62 (225)
T ss_pred eEEEeccEEeeCCceee------------------eccEEEEcCCCEEEEECCCCCCHHHHHHHHhcc----cCCCCC--
Confidence 46677888876533222 335677889999999999999999999999999 899999
Q ss_pred eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCc
Q psy16304 232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSV 311 (537)
Q Consensus 232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~ 311 (537)
++.++| ..+...+. . ..+..+++++|++.++.. +. .+ ++..................
T Consensus 63 --~i~~~g-~~~~~~~~---~----~~~~~i~~~~q~~~l~~~-tv-----~e-------nl~~~~~~~~~~~~~~~~~~ 119 (225)
T PRK10247 63 --TLLFEG-EDISTLKP---E----IYRQQVSYCAQTPTLFGD-TV-----YD-------NLIFPWQIRNQQPDPAIFLD 119 (225)
T ss_pred --eEEECC-EEcCcCCH---H----HHHhccEEEecccccccc-cH-----HH-------HHHhHHhhcCCChHHHHHHH
Confidence 888887 43321111 1 123678999999775432 11 01 00000000000000011123
Q ss_pred cEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEE
Q psy16304 312 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLL 384 (537)
Q Consensus 312 ~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIl 384 (537)
.+..+|+........+.+||+|++||+ +++++++. + |+++++| |+|++.. ...+..+.++.+.+++
T Consensus 120 ~l~~~~l~~~~~~~~~~~LS~G~~qrv----~laral~~-~--p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi 192 (225)
T PRK10247 120 DLERFALPDTILTKNIAELSGGEKQRI----SLIRNLQF-M--PKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVL 192 (225)
T ss_pred HHHHcCCChHHhcCCcccCCHHHHHHH----HHHHHHhc-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 344566643222445889999999999 99999997 5 8999999 9999332 2223344333345666
Q ss_pred EEeCCCcchhhhhh-hhhhc
Q psy16304 385 VSHSLSGRPDDRCQ-VYLMS 403 (537)
Q Consensus 385 Vvdshd~~~~~~~~-i~ll~ 403 (537)
++ +|+......++ +++++
T Consensus 193 i~-sh~~~~~~~~d~i~~l~ 211 (225)
T PRK10247 193 WV-THDKDEINHADKVITLQ 211 (225)
T ss_pred EE-ECChHHHHhCCEEEEEe
Confidence 66 78877665444 55553
No 156
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=1.1e-20 Score=192.60 Aligned_cols=195 Identities=13% Similarity=0.115 Sum_probs=125.6
Q ss_pred ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304 187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS 266 (537)
Q Consensus 187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~ 266 (537)
.++++.+.+|++++|+|+||||||||+++|+|. ..|++| +|.++| ..+..... ... ....+..+++++
T Consensus 24 ~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl----~~p~~G----~i~~~g-~~~~~~~~--~~~-~~~~~~~ig~v~ 91 (287)
T PRK13641 24 DNISFELEEGSFVALVGHTGSGKSTLMQHFNAL----LKPSSG----TITIAG-YHITPETG--NKN-LKKLRKKVSLVF 91 (287)
T ss_pred eeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC----CCCCCc----EEEECC-EECccccc--cch-HHHHHhceEEEE
Confidence 445677889999999999999999999999999 999999 999987 44321110 001 112335789999
Q ss_pred cCCC--CCCCccceeeEEeecCcccccCCcccc--cccCcCCccccCCccEEEeccC-ccCccchhhhhcCCCceeeecc
Q psy16304 267 QTPL--GRPDSRTCQVYLIMCGVHQVSGIPDEL--TSATHLPLVDFRSVPILVLGLD-NAGKSSIIKRILGEPIISLVPT 341 (537)
Q Consensus 267 Q~~~--l~~~~~~~il~v~Ds~~~~~~~l~~~l--~~~~~l~~~~~~~~~L~llGl~-~~gKs~li~~LSgG~rqrvs~t 341 (537)
|++. ++ ..+. .+ ++.... .....-....+....+..+|+. ... ...+..|||||+||+
T Consensus 92 q~~~~~~~-~~tv-----~e-------~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-~~~~~~LSgGq~qrl--- 154 (287)
T PRK13641 92 QFPEAQLF-ENTV-----LK-------DVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLI-SKSPFELSGGQMRRV--- 154 (287)
T ss_pred eChhhhhc-cchH-----HH-------HHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHh-hCCcccCCHHHHHHH---
Confidence 9863 22 1111 01 000000 0000000011122334466775 333 444889999999999
Q ss_pred cccccceeccCCceEEEEEe--cCchhhHH-----HHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEec
Q psy16304 342 VGFNRARVEYGNKYEVFLYD--LGGSEDFR-----TIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLIS 412 (537)
Q Consensus 342 i~la~all~~~e~p~lllLD--T~Gl~~~~-----~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~ 412 (537)
+++++++. + |++++|| |+|++... .++..+.+ .+.+++++ +|+.......+ ++++++|+++..++
T Consensus 155 -~laral~~-~--p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~-~g~tvliv-sH~~~~~~~~~d~v~~l~~G~i~~~g~ 228 (287)
T PRK13641 155 -AIAGVMAY-E--PEILCLDEPAAGLDPEGRKEMMQLFKDYQK-AGHTVILV-THNMDDVAEYADDVLVLEHGKLIKHAS 228 (287)
T ss_pred -HHHHHHHc-C--CCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEE-eCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999997 5 8999999 99993332 22233322 24566666 89988776543 89999999998887
Q ss_pred ccch
Q psy16304 413 AKNL 416 (537)
Q Consensus 413 nkdl 416 (537)
+.++
T Consensus 229 ~~~~ 232 (287)
T PRK13641 229 PKEI 232 (287)
T ss_pred HHHH
Confidence 7665
No 157
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.79 E-value=1.6e-20 Score=187.25 Aligned_cols=191 Identities=14% Similarity=0.077 Sum_probs=123.5
Q ss_pred cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCc-----eeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhh
Q psy16304 188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPT-----VGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYL 262 (537)
Q Consensus 188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt-----~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i 262 (537)
++++.+.+|++++|+|+||||||||+++|+|. ..|+ +| +|.++| .++.... .....++..+
T Consensus 19 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~----~~p~~~~~~~G----~i~~~g-~~~~~~~-----~~~~~~~~~i 84 (247)
T TIGR00972 19 NINLDIPKNQVTALIGPSGCGKSTLLRSLNRM----NDLVPGVRIEG----KVLFDG-QDIYDKK-----IDVVELRRRV 84 (247)
T ss_pred ceeEEECCCCEEEEECCCCCCHHHHHHHHhcc----CCCCcCCCCce----EEEECC-EEccccc-----cchHHHHhhe
Confidence 45677889999999999999999999999999 8888 99 999887 4432110 0012234679
Q ss_pred hccccCCCCCCCccceeeEEeecCcccccCCcccccccCcC---CccccCCccEEEeccC----ccCccchhhhhcCCCc
Q psy16304 263 GTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHL---PLVDFRSVPILVLGLD----NAGKSSIIKRILGEPI 335 (537)
Q Consensus 263 ~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l---~~~~~~~~~L~llGl~----~~gKs~li~~LSgG~r 335 (537)
++++|++.++. .+. .+ ++.......... .........+..+|+. .. ....+.+|||||+
T Consensus 85 ~~v~q~~~~~~-~tv-----~e-------~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LSgG~~ 150 (247)
T TIGR00972 85 GMVFQKPNPFP-MSI-----YD-------NIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDR-LHDSALGLSGGQQ 150 (247)
T ss_pred EEEecCcccCC-CCH-----HH-------HHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhH-hhCCcccCCHHHH
Confidence 99999977554 221 01 000000000000 0001112223345554 22 2344789999999
Q ss_pred eeeecccccccceeccCCceEEEEEe--cCchhhH--H---HHHHHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCc
Q psy16304 336 ISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--R---TIWKQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNC 406 (537)
Q Consensus 336 qrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~---~l~~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ 406 (537)
||+ +++++++. + |+++++| |+|++.. . .++..+.+ ..+++++ +|+....... + ++++++|+
T Consensus 151 qrv----~laral~~-~--p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiiv-sH~~~~~~~~~d~i~~l~~G~ 220 (247)
T TIGR00972 151 QRL----CIARALAV-E--PEVLLLDEPTSALDPIATGKIEELIQELKK--KYTIVIV-THNMQQAARISDRTAFFYDGE 220 (247)
T ss_pred HHH----HHHHHHhc-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCeEEEE-ecCHHHHHHhCCEEEEEECCE
Confidence 999 99999996 5 8999999 9999433 2 22333333 2566666 8888876543 3 88999999
Q ss_pred EEEEecccch
Q psy16304 407 QVYLISAKNL 416 (537)
Q Consensus 407 ii~~g~nkdl 416 (537)
++..+.+.++
T Consensus 221 i~~~~~~~~~ 230 (247)
T TIGR00972 221 LVEYGPTEQI 230 (247)
T ss_pred EEEeCCHHHH
Confidence 9888776655
No 158
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=1.2e-20 Score=190.85 Aligned_cols=213 Identities=15% Similarity=0.115 Sum_probs=132.7
Q ss_pred hhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceee
Q psy16304 151 ILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF 230 (537)
Q Consensus 151 ~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~ 230 (537)
.++.++++.+.|+... . .+-.++++.+.+|++++|+|+||||||||+++|+|. ..|+.|
T Consensus 6 ~~l~~~nl~~~~~~~~---~-------------~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl----~~p~~G- 64 (271)
T PRK13632 6 VMIKVENVSFSYPNSE---N-------------NALKNVSFEINEGEYVAILGHNGSGKSTISKILTGL----LKPQSG- 64 (271)
T ss_pred eEEEEEeEEEEcCCCC---c-------------cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC----CCCCCc-
Confidence 3567788888764210 0 012345677889999999999999999999999999 999999
Q ss_pred eeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCC-CCCCccceeeEEeecCcccccCCccccc--ccCcCCccc
Q psy16304 231 NRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL-GRPDSRTCQVYLIMCGVHQVSGIPDELT--SATHLPLVD 307 (537)
Q Consensus 231 t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~-l~~~~~~~il~v~Ds~~~~~~~l~~~l~--~~~~l~~~~ 307 (537)
+|.++| ..+...+ ...++..+++++|++. .+...+. .+ ++..... .........
T Consensus 65 ---~I~~~g-~~i~~~~-------~~~~~~~i~~v~q~~~~~~~~~tv-----~e-------nl~~~~~~~~~~~~~~~~ 121 (271)
T PRK13632 65 ---EIKIDG-ITISKEN-------LKEIRKKIGIIFQNPDNQFIGATV-----ED-------DIAFGLENKKVPPKKMKD 121 (271)
T ss_pred ---eEEECC-EecCcCC-------HHHHhcceEEEEeCHHHhcCcccH-----HH-------HHHhHHHHcCCCHHHHHH
Confidence 899887 4432111 1123367899999863 2222111 00 0000000 000000000
Q ss_pred cCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH--HHHH---HHHHhcCC
Q psy16304 308 FRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIW---KQYLGTVS 380 (537)
Q Consensus 308 ~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l~---~~~~~~~~ 380 (537)
.....+..+|+.... ...+.+|||||+||+ +++++++. + |++++|| |+|++.. ..++ ..+.++.+
T Consensus 122 ~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrl----~laral~~-~--p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~ 193 (271)
T PRK13632 122 IIDDLAKKVGMEDYL-DKEPQNLSGGQKQRV----AIASVLAL-N--PEIIIFDESTSMLDPKGKREIKKIMVDLRKTRK 193 (271)
T ss_pred HHHHHHHHcCCHHHh-hCCcccCCHHHHHHH----HHHHHHHc-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 112233456665443 344789999999999 99999996 5 8999999 9999332 2233 34333333
Q ss_pred EEEEEEeCCCcchhhhhh-hhhhcCCcEEEEecccch
Q psy16304 381 QTLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 381 ~vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g~nkdl 416 (537)
.+++++ +|+......++ ++++++|++...+...++
T Consensus 194 ~tiii~-sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 229 (271)
T PRK13632 194 KTLISI-THDMDEAILADKVIVFSEGKLIAQGKPKEI 229 (271)
T ss_pred cEEEEE-EechhHHhhCCEEEEEECCEEEEecCHHHH
Confidence 566666 67776665444 889999999877766554
No 159
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.79 E-value=1.9e-20 Score=187.79 Aligned_cols=197 Identities=11% Similarity=0.074 Sum_probs=124.6
Q ss_pred ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304 187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS 266 (537)
Q Consensus 187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~ 266 (537)
.++++.+.+|++++|+|+||||||||+++|+|. +.|+.| ++.++| .++..++. ..+...+++++
T Consensus 18 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~----~~~~~G----~i~~~g-~~~~~~~~-------~~~~~~i~~~~ 81 (256)
T TIGR03873 18 DGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGA----LRPDAG----TVDLAG-VDLHGLSR-------RARARRVALVE 81 (256)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCC----CCCCCC----EEEECC-EEcccCCH-------HHHhhheEEec
Confidence 345677889999999999999999999999999 999999 899887 44432211 11235689999
Q ss_pred cCCCCCCCccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccc
Q psy16304 267 QTPLGRPDSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN 345 (537)
Q Consensus 267 Q~~~l~~~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la 345 (537)
|++..+...+. .+ ...... ....... ...-....+....+..+|+.... ...+.+||+||+||+ +++
T Consensus 82 q~~~~~~~~tv-----~e~l~~~~~-~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrl----~la 149 (256)
T TIGR03873 82 QDSDTAVPLTV-----RDVVALGRI-PHRSLWA-GDSPHDAAVVDRALARTELSHLA-DRDMSTLSGGERQRV----HVA 149 (256)
T ss_pred ccCccCCCCCH-----HHHHHhcch-hhhhhcc-CCCHHHHHHHHHHHHHcCcHhhh-cCCcccCCHHHHHHH----HHH
Confidence 98753332221 01 000000 0000000 00000001122234456665443 344889999999999 999
Q ss_pred cceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEecccch
Q psy16304 346 RARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 346 ~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~nkdl 416 (537)
++++. + |+++++| |+|++.. ...+..+.+. ..+++++ +|+....... + ++++++|+++..+..+++
T Consensus 150 ~al~~-~--p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiii~-sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 224 (256)
T TIGR03873 150 RALAQ-E--PKLLLLDEPTNHLDVRAQLETLALVRELAAT-GVTVVAA-LHDLNLAASYCDHVVVLDGGRVVAAGPPREV 224 (256)
T ss_pred HHHhc-C--CCEEEEcCccccCCHHHHHHHHHHHHHHHhc-CCEEEEE-eCCHHHHHHhCCEEEEEeCCCEEEecCHHHh
Confidence 99996 5 8999999 9999322 2233343332 3566666 8998887543 3 899999999887765554
No 160
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=1.1e-20 Score=191.40 Aligned_cols=194 Identities=13% Similarity=0.101 Sum_probs=125.9
Q ss_pred ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304 187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS 266 (537)
Q Consensus 187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~ 266 (537)
..+++.+.+|++++|+|+||||||||+++|+|. ..|+.| +|.++| ..+..++ . ...+...+++++
T Consensus 19 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~p~~G----~i~~~g-~~~~~~~-----~-~~~~~~~i~~v~ 83 (274)
T PRK13644 19 ENINLVIKKGEYIGIIGKNGSGKSTLALHLNGL----LRPQKG----KVLVSG-IDTGDFS-----K-LQGIRKLVGIVF 83 (274)
T ss_pred eeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC----CCCCCc----eEEECC-EECCccc-----c-HHHHHhheEEEE
Confidence 345677889999999999999999999999999 999999 899887 4432211 1 112346799999
Q ss_pred cCCCC-CCCccceeeEEeecCcccccCCcccccc--cCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccc
Q psy16304 267 QTPLG-RPDSRTCQVYLIMCGVHQVSGIPDELTS--ATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG 343 (537)
Q Consensus 267 Q~~~l-~~~~~~~il~v~Ds~~~~~~~l~~~l~~--~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~ 343 (537)
|++.. +...+. .+ ++...... .............+..+|+.... ...+..||+||+||+ +
T Consensus 84 q~~~~~~~~~tv-----~e-------nl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~LS~G~~qrv----~ 146 (274)
T PRK13644 84 QNPETQFVGRTV-----EE-------DLAFGPENLCLPPIEIRKRVDRALAEIGLEKYR-HRSPKTLSGGQGQCV----A 146 (274)
T ss_pred EChhhhcccchH-----HH-------HHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHh-cCCcccCCHHHHHHH----H
Confidence 98642 211111 00 00000000 00000011122234456766543 445899999999999 9
Q ss_pred cccceeccCCceEEEEEe--cCchhhH--HHHHHHHH--hcCCEEEEEEeCCCcchhhhhh-hhhhcCCcEEEEecccch
Q psy16304 344 FNRARVEYGNKYEVFLYD--LGGSEDF--RTIWKQYL--GTVSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 344 la~all~~~e~p~lllLD--T~Gl~~~--~~l~~~~~--~~~~~vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g~nkdl 416 (537)
++++++. + |+++++| |+|++.. ..+++.+. ...+.+++++ +|+......++ ++++++|+++..+..+++
T Consensus 147 laral~~-~--p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~-tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 222 (274)
T PRK13644 147 LAGILTM-E--PECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYI-THNLEELHDADRIIVMDRGKIVLEGEPENV 222 (274)
T ss_pred HHHHHHc-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEE-ecCHHHHhhCCEEEEEECCEEEEECCHHHH
Confidence 9999996 5 8999999 9999432 33333332 2234566666 88888776544 888999999888876665
No 161
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.79 E-value=2e-20 Score=208.72 Aligned_cols=264 Identities=14% Similarity=0.059 Sum_probs=165.0
Q ss_pred hhhHHHHHhhhcccccccccccccccCccccccccCCCCCCchhHHHHHHHHHHHHhhhcccccCCCcccCCCCCCCCCc
Q psy16304 94 AEIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAPTFEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDDPAP 173 (537)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~~~~~~ 173 (537)
.-..|+..++..+..++.+..+++++.++++.+....++..+... . -....+.++++...|++.. +
T Consensus 284 ~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~-------~-~~~~~i~~~~v~~~y~~~~----~-- 349 (585)
T TIGR01192 284 LLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPADAPEL-------P-NVKGAVEFRHITFEFANSS----Q-- 349 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCccCCCC-------C-CCCCeEEEEEEEEECCCCC----c--
Confidence 456799999999999999988999888877644322211111000 0 0012356677777665321 0
Q ss_pred chhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCch
Q psy16304 174 TFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSED 253 (537)
Q Consensus 174 ~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~ 253 (537)
+-.++++.+++|++++|+|+||||||||+++|+|. +.|++| ++.++| .++..++.
T Consensus 350 -----------~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~----~~~~~G----~i~~~g-~~~~~~~~----- 404 (585)
T TIGR01192 350 -----------GVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRV----YDPTVG----QILIDG-IDINTVTR----- 404 (585)
T ss_pred -----------cccceeEEEcCCCEEEEECCCCCCHHHHHHHHccC----CCCCCC----EEEECC-EEhhhCCH-----
Confidence 12345677889999999999999999999999999 999999 999987 55543332
Q ss_pred hhHHHHhhhhccccCCCCCCC-ccceeeEEe-ecCcccccCCcccccccCcCCccccCCccEE--EeccCccCccchhhh
Q psy16304 254 FRTIWKQYLGTVSQTPLGRPD-SRTCQVYLI-MCGVHQVSGIPDELTSATHLPLVDFRSVPIL--VLGLDNAGKSSIIKR 329 (537)
Q Consensus 254 ~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~-Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~--llGl~~~gKs~li~~ 329 (537)
..+++.+++++|++.++.. ..+++.+.. +.+.++ +.+.+... ++ ...+. .-|+...- ......
T Consensus 405 --~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~---~~~a~~~~-~~------~~~i~~l~~g~~t~~-~~~~~~ 471 (585)
T TIGR01192 405 --ESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEE---VYEAAKAA-AA------HDFILKRSNGYDTLV-GERGNR 471 (585)
T ss_pred --HHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHH---HHHHHHHh-Cc------HHHHHhccccccchh-cCCCCC
Confidence 2344789999999987654 222221110 000000 00000000 00 00000 11221111 111456
Q ss_pred hcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH--HHHHHHHHhc-CCEEEEEEeCCCcchhhhhh-hhhhc
Q psy16304 330 ILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIWKQYLGT-VSQTLLVSHSLSGRPDDRCQ-VYLMS 403 (537)
Q Consensus 330 LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l~~~~~~~-~~~vIlVvdshd~~~~~~~~-i~ll~ 403 (537)
|||||+||+ ++|++++. + |+++++| |++++.. ..+++.+.+. .+.+++++ +|+.+....++ +++++
T Consensus 472 LSgGq~qrl----~lARall~-~--p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~i-sH~~~~~~~~d~i~~l~ 543 (585)
T TIGR01192 472 LSGGERQRL----AIARAILK-N--APILVLDEATSALDVETEARVKNAIDALRKNRTTFII-AHRLSTVRNADLVLFLD 543 (585)
T ss_pred CCHHHHHHH----HHHHHHhc-C--CCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEE-EcChHHHHcCCEEEEEE
Confidence 999999999 99999996 5 8999999 9999433 3333433322 24566666 78887776666 89999
Q ss_pred CCcEEEEecccchh
Q psy16304 404 CNCQVYLISAKNLS 417 (537)
Q Consensus 404 ~G~ii~~g~nkdl~ 417 (537)
+|+++..|+.+++.
T Consensus 544 ~G~i~~~g~~~~l~ 557 (585)
T TIGR01192 544 QGRLIEKGSFQELI 557 (585)
T ss_pred CCEEEEECCHHHHH
Confidence 99999888877764
No 162
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=2.3e-20 Score=186.36 Aligned_cols=211 Identities=15% Similarity=0.087 Sum_probs=131.5
Q ss_pred hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCcccc-----C
Q psy16304 152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLV-----P 226 (537)
Q Consensus 152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~-----P 226 (537)
++.++++.+.|+.... -.++++.+.+|++++|+|+||||||||+++|+|. .. |
T Consensus 3 ~l~~~~l~~~~~~~~~------------------l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~----~~~~~~~~ 60 (250)
T PRK14247 3 KIEIRDLKVSFGQVEV------------------LDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRL----IELYPEAR 60 (250)
T ss_pred eEEEEeeEEEECCeee------------------eecceeEEcCCCEEEEECCCCCCHHHHHHHHhcc----CCCCCCCC
Confidence 3566777776653221 2345677889999999999999999999999998 76 4
Q ss_pred ceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccc--c-Cc-
Q psy16304 227 TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTS--A-TH- 302 (537)
Q Consensus 227 t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~--~-~~- 302 (537)
++| +|.++| .++..++ . ..++..+++++|++.++...+. .+ ++...... . ..
T Consensus 61 ~~G----~i~~~g-~~i~~~~---~----~~~~~~i~~v~q~~~~~~~~tv-----~e-------nl~~~~~~~~~~~~~ 116 (250)
T PRK14247 61 VSG----EVYLDG-QDIFKMD---V----IELRRRVQMVFQIPNPIPNLSI-----FE-------NVALGLKLNRLVKSK 116 (250)
T ss_pred Cce----EEEECC-EECCcCC---H----HHHhccEEEEeccCccCCCCcH-----HH-------HHHHHHHhccccCCH
Confidence 799 899887 4432111 1 1233678999999765443222 00 00000000 0 00
Q ss_pred CCccccCCccEEEeccCc---cCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH--HHHHHH
Q psy16304 303 LPLVDFRSVPILVLGLDN---AGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR--TIWKQY 375 (537)
Q Consensus 303 l~~~~~~~~~L~llGl~~---~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~--~l~~~~ 375 (537)
-.........+..+|+.. ......+.+|||||+||+ +++++++. + |+++++| |+|++... .+++.+
T Consensus 117 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv----~laral~~-~--p~lllLDEP~~~LD~~~~~~l~~~l 189 (250)
T PRK14247 117 KELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRL----CIARALAF-Q--PEVLLADEPTANLDPENTAKIESLF 189 (250)
T ss_pred HHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHH----HHHHHHhc-C--CCEEEEcCCCccCCHHHHHHHHHHH
Confidence 000001112233445432 112444789999999999 99999996 5 8999999 99994332 222322
Q ss_pred Hh-cCCEEEEEEeCCCcchhhh-hh-hhhhcCCcEEEEecccch
Q psy16304 376 LG-TVSQTLLVSHSLSGRPDDR-CQ-VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 376 ~~-~~~~vIlVvdshd~~~~~~-~~-i~ll~~G~ii~~g~nkdl 416 (537)
.+ ..+.+++++ +|+...... ++ ++++++|++...+..+++
T Consensus 190 ~~~~~~~tiii~-sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14247 190 LELKKDMTIVLV-THFPQQAARISDYVAFLYKGQIVEWGPTREV 232 (250)
T ss_pred HHHhcCCEEEEE-eCCHHHHHHhcCEEEEEECCeEEEECCHHHH
Confidence 22 113566666 899887654 33 889999999888777665
No 163
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.79 E-value=3.9e-20 Score=170.83 Aligned_cols=216 Identities=14% Similarity=0.106 Sum_probs=154.5
Q ss_pred hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304 152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN 231 (537)
Q Consensus 152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t 231 (537)
.+.++++.|.||...+... +|+.-.+|+.|.|+|.+|+||||+|+||.-+ ..|+.|
T Consensus 6 ~l~v~dlHK~~G~~eVLKG------------------vSL~A~~GdVisIIGsSGSGKSTfLRCiN~L----E~P~~G-- 61 (256)
T COG4598 6 ALEVEDLHKRYGEHEVLKG------------------VSLQANAGDVISIIGSSGSGKSTFLRCINFL----EKPSAG-- 61 (256)
T ss_pred ceehhHHHhhcccchhhcc------------------eeeecCCCCEEEEecCCCCchhHHHHHHHhh----cCCCCc--
Confidence 4567888888887655544 3466779999999999999999999999999 899999
Q ss_pred eEEEEECCcEEEEEe-ecCCCc---hhh--HHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccc-cccCcC-
Q psy16304 232 RARVEYGNKYEVFLY-DLGGSE---DFR--TIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDEL-TSATHL- 303 (537)
Q Consensus 232 ~~~i~i~g~~~i~~~-D~~G~~---~~r--~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l-~~~~~l- 303 (537)
.|.++| ..+... |..|.- +.+ ...+..+++|||++.++..++. .+++.+.- ..++.-
T Consensus 62 --~I~v~g-eei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtv------------LeNViEaPvhVLg~~k 126 (256)
T COG4598 62 --SIRVNG-EEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTV------------LENVIEAPVHVLGVSK 126 (256)
T ss_pred --eEEECC-eEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHH------------HHHHHhcchHhhcCCH
Confidence 999987 555543 333332 111 3455789999999998877665 22222211 111111
Q ss_pred -CccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCch--h---hHHHHHHHH
Q psy16304 304 -PLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGS--E---DFRTIWKQY 375 (537)
Q Consensus 304 -~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl--~---~~~~l~~~~ 375 (537)
+...+++..+..+|+.+.. ..++..|||||+||+ ++|+++.. . |+++++| |+.+ + +...+.+++
T Consensus 127 ~ea~e~Ae~~L~kVGi~ek~-~~YP~~LSGGQQQR~----aIARaLam-e--P~vmLFDEPTSALDPElVgEVLkv~~~L 198 (256)
T COG4598 127 AEAIERAEKYLAKVGIAEKA-DAYPAHLSGGQQQRV----AIARALAM-E--PEVMLFDEPTSALDPELVGEVLKVMQDL 198 (256)
T ss_pred HHHHHHHHHHHHHhCchhhh-hcCccccCchHHHHH----HHHHHHhc-C--CceEeecCCcccCCHHHHHHHHHHHHHH
Confidence 1112334455578887765 578999999999999 99999986 4 8999999 8888 2 333344677
Q ss_pred HhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccch
Q psy16304 376 LGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 376 ~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl 416 (537)
.+++.+. +++ +|.+.++.++. ++++++|.+-..|.|+.+
T Consensus 199 AeEgrTM-v~V-THEM~FAR~Vss~v~fLh~G~iEE~G~P~qv 239 (256)
T COG4598 199 AEEGRTM-VVV-THEMGFARDVSSHVIFLHQGKIEEEGPPEQV 239 (256)
T ss_pred HHhCCeE-EEE-eeehhHHHhhhhheEEeecceecccCChHHH
Confidence 6666554 444 68888888776 888999999999998876
No 164
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.79 E-value=2.5e-20 Score=207.30 Aligned_cols=262 Identities=13% Similarity=0.106 Sum_probs=163.5
Q ss_pred hhhHHHHHhhhcccccccccccccccCccccccccCCCCCCchhHHHHHHHHHHHHhhhcccccCCCcccCCCCCCCCCc
Q psy16304 94 AEIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAPTFEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDDPAP 173 (537)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~~~~~~ 173 (537)
.-+.|+..++..+..++....+.+++.++++.+........+... ....+.++++...|+...
T Consensus 265 ~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~~~~~~----------~~~~I~~~~v~~~y~~~~------- 327 (569)
T PRK10789 265 LMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGSEPVPE----------GRGELDVNIRQFTYPQTD------- 327 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCCCCC----------CCCcEEEEEEEEECCCCC-------
Confidence 456899999999999999999999998888744221111000000 011244555555543210
Q ss_pred chhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCch
Q psy16304 174 TFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSED 253 (537)
Q Consensus 174 ~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~ 253 (537)
..+-.++++.+++|++++|+|+||||||||+++|+|. +.|++| ++.++| .++..++.
T Consensus 328 ---------~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~----~~p~~G----~i~~~g-~~~~~~~~----- 384 (569)
T PRK10789 328 ---------HPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRH----FDVSEG----DIRFHD-IPLTKLQL----- 384 (569)
T ss_pred ---------CccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcc----cCCCCC----EEEECC-EEHhhCCH-----
Confidence 0123456688889999999999999999999999999 999999 999987 55433322
Q ss_pred hhHHHHhhhhccccCCCCCCC-ccceeeEEe-ecCcccccCCccccc---ccCcCCccccCCccEEEeccCccCccchhh
Q psy16304 254 FRTIWKQYLGTVSQTPLGRPD-SRTCQVYLI-MCGVHQVSGIPDELT---SATHLPLVDFRSVPILVLGLDNAGKSSIIK 328 (537)
Q Consensus 254 ~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~-Ds~~~~~~~l~~~l~---~~~~l~~~~~~~~~L~llGl~~~gKs~li~ 328 (537)
..+++.+++++|++.++.. ..+++.+.. +.+.++.....+... .+..++.. .-..+|.. ..
T Consensus 385 --~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~g-----l~t~~~~~-------g~ 450 (569)
T PRK10789 385 --DSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQG-----YDTEVGER-------GV 450 (569)
T ss_pred --HHHHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCc-----ccceecCC-------CC
Confidence 2345789999999987754 222222110 111111110000000 00000000 00012211 34
Q ss_pred hhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH--HHHHHHHHhc-CCEEEEEEeCCCcchhhhhh-hhhh
Q psy16304 329 RILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIWKQYLGT-VSQTLLVSHSLSGRPDDRCQ-VYLM 402 (537)
Q Consensus 329 ~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l~~~~~~~-~~~vIlVvdshd~~~~~~~~-i~ll 402 (537)
.|||||+||+ ++||+++. + |+++++| |++++.. ..+++.+.+. .+.+++++ +|+......++ ++++
T Consensus 451 ~LSgGq~qRi----~lARall~-~--~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~i-tH~~~~~~~~d~i~~l 522 (569)
T PRK10789 451 MLSGGQKQRI----SIARALLL-N--AEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIIS-AHRLSALTEASEILVM 522 (569)
T ss_pred cCCHHHHHHH----HHHHHHhc-C--CCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEE-ecchhHHHcCCEEEEE
Confidence 5999999999 99999997 5 8999999 9999433 2333433322 23466666 78877776666 8899
Q ss_pred cCCcEEEEecccchh
Q psy16304 403 SCNCQVYLISAKNLS 417 (537)
Q Consensus 403 ~~G~ii~~g~nkdl~ 417 (537)
++|+++..|+.+++.
T Consensus 523 ~~G~i~~~g~~~~l~ 537 (569)
T PRK10789 523 QHGHIAQRGNHDQLA 537 (569)
T ss_pred eCCEEEEecCHHHHH
Confidence 999999999887774
No 165
>PLN03232 ABC transporter C family member; Provisional
Probab=99.79 E-value=2.1e-20 Score=227.11 Aligned_cols=265 Identities=15% Similarity=0.109 Sum_probs=169.3
Q ss_pred hhHHHHHhhhcccccccccccccccCccccccccCCC----CCCchhHHHHHHHHHHHHhhhcccccCCCcccCCCCCCC
Q psy16304 95 EIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDD----PAPTFEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDD 170 (537)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~p~~~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~~~ 170 (537)
...|+..+...+.+++....+++|+.++++.+..... ..||-.. -....+.+++++..|+...
T Consensus 1182 ~~~~l~~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~---------p~~g~I~f~nVsf~Y~~~~---- 1248 (1495)
T PLN03232 1182 ITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGW---------PSRGSIKFEDVHLRYRPGL---- 1248 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCC---------CCCCcEEEEEEEEEECCCC----
Confidence 4457778888888899999999999988875433211 0011000 0012356677777663221
Q ss_pred CCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCC
Q psy16304 171 PAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGG 250 (537)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G 250 (537)
+ .+-+++++.+++|+++||||++|||||||+++|.|. ++|+.| +|.++| +++.-++.
T Consensus 1249 ~------------~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl----~~p~~G----~I~IdG-~di~~i~~-- 1305 (1495)
T PLN03232 1249 P------------PVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRI----VELEKG----RIMIDD-CDVAKFGL-- 1305 (1495)
T ss_pred C------------cccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CcCCCc----eEEECC-EEhhhCCH--
Confidence 0 123456788889999999999999999999999999 999999 999997 66654443
Q ss_pred CchhhHHHHhhhhccccCCCCCCC-ccceeeEEeecCcccccCCcccccccCcCCccccCCccE-EEeccCccCccchhh
Q psy16304 251 SEDFRTIWKQYLGTVSQTPLGRPD-SRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPI-LVLGLDNAGKSSIIK 328 (537)
Q Consensus 251 ~~~~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L-~llGl~~~gKs~li~ 328 (537)
.. +++.+++|+|++.+|.. ..+++-..-+.+.+ ++.+.++..+-.+....-..-+ ..+|.. -.
T Consensus 1306 -~~----lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sde---ei~~al~~a~l~~~I~~lp~GLdt~v~e~-------G~ 1370 (1495)
T PLN03232 1306 -TD----LRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDA---DLWEALERAHIKDVIDRNPFGLDAEVSEG-------GE 1370 (1495)
T ss_pred -HH----HHhhcEEECCCCeeeCccHHHHcCCCCCCCHH---HHHHHHHHcCCHHHHHhCcCCCCceecCC-------CC
Confidence 33 44889999999998764 22222110010111 1111111000000000000000 022222 23
Q ss_pred hhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHHH--HHHHHHhc-CCEEEEEEeCCCcchhhhhh-hhhh
Q psy16304 329 RILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRT--IWKQYLGT-VSQTLLVSHSLSGRPDDRCQ-VYLM 402 (537)
Q Consensus 329 ~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~--l~~~~~~~-~~~vIlVvdshd~~~~~~~~-i~ll 402 (537)
.||||||||+ ++||+++. + |++++|| |++++...+ +.+.+.+. .+.+++++ +|...+...++ ++++
T Consensus 1371 ~LSgGQrQrl----aLARALLr-~--~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~I-AHRl~ti~~~DrIlVL 1442 (1495)
T PLN03232 1371 NFSVGQRQLL----SLARALLR-R--SKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVI-AHRLNTIIDCDKILVL 1442 (1495)
T ss_pred CCCHHHHHHH----HHHHHHHh-C--CCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEE-eCCHHHHHhCCEEEEE
Confidence 5999999999 99999996 5 8999999 999954433 22333333 34577777 89998888777 9999
Q ss_pred cCCcEEEEecccchhh
Q psy16304 403 SCNCQVYLISAKNLSN 418 (537)
Q Consensus 403 ~~G~ii~~g~nkdl~~ 418 (537)
++|+++..|+++++.+
T Consensus 1443 ~~G~ivE~Gt~~eLl~ 1458 (1495)
T PLN03232 1443 SSGQVLEYDSPQELLS 1458 (1495)
T ss_pred ECCEEEEECCHHHHHh
Confidence 9999999999998853
No 166
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.79 E-value=2.4e-20 Score=181.56 Aligned_cols=184 Identities=15% Similarity=0.109 Sum_probs=117.6
Q ss_pred cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304 188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ 267 (537)
Q Consensus 188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q 267 (537)
++++.+.+|++++|+|+||||||||+++|+|. ..|+.| ++.++| ..+.. . ......++..+++++|
T Consensus 18 ~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~----~~~~~G----~i~~~g-~~~~~-~----~~~~~~~~~~i~~~~q 83 (213)
T cd03262 18 GIDLTVKKGEVVVIIGPSGSGKSTLLRCINLL----EEPDSG----TIIIDG-LKLTD-D----KKNINELRQKVGMVFQ 83 (213)
T ss_pred CceEEECCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCc----eEEECC-EECCc-c----chhHHHHHhcceEEec
Confidence 45677889999999999999999999999999 899999 899887 43321 0 0011223467999999
Q ss_pred CCCCCCCccceeeEEeecCcccccCCcccccccCcCC---ccccCCccEEEeccCccCccchhhhhcCCCceeeeccccc
Q psy16304 268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF 344 (537)
Q Consensus 268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~l 344 (537)
++.+++..+.. + ++.........+. ........+..+|+.... ...+.+|||||+|++ ++
T Consensus 84 ~~~~~~~~t~~-----e-------~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv----~l 146 (213)
T cd03262 84 QFNLFPHLTVL-----E-------NITLAPIKVKGMSKAEAEERALELLEKVGLADKA-DAYPAQLSGGQQQRV----AI 146 (213)
T ss_pred ccccCCCCcHH-----H-------HHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHh-hhCccccCHHHHHHH----HH
Confidence 98765432220 0 0000000000000 001112233355665433 455889999999999 99
Q ss_pred ccceeccCCceEEEEEe--cCchhhHH-----HHHHHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcE
Q psy16304 345 NRARVEYGNKYEVFLYD--LGGSEDFR-----TIWKQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQ 407 (537)
Q Consensus 345 a~all~~~e~p~lllLD--T~Gl~~~~-----~l~~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~i 407 (537)
+++++. + |+++++| |+|++... ..+.++.+ .+.+++++ +|+....... + ++++++|++
T Consensus 147 a~al~~-~--p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tvi~~-sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 147 ARALAM-N--PKVMLFDEPTSALDPELVGEVLDVMKDLAE-EGMTMVVV-THEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHhc-C--CCEEEEeCCccCCCHHHHHHHHHHHHHHHH-cCCEEEEE-eCCHHHHHHhCCEEEEEeCCcC
Confidence 999997 5 8999999 99994332 23333333 23566666 8998877653 3 777877763
No 167
>PLN03073 ABC transporter F family; Provisional
Probab=99.79 E-value=1.3e-20 Score=213.21 Aligned_cols=232 Identities=13% Similarity=0.033 Sum_probs=144.4
Q ss_pred hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304 152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN 231 (537)
Q Consensus 152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t 231 (537)
++.++++++.|++..+. .+++|.+.+|+++||||+|||||||||++|+|..... .|+.|
T Consensus 177 ~I~i~nls~~y~~~~ll------------------~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g-~p~~g-- 235 (718)
T PLN03073 177 DIHMENFSISVGGRDLI------------------VDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDG-IPKNC-- 235 (718)
T ss_pred eEEEceEEEEeCCCEEE------------------ECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC-CCCCC--
Confidence 56777788777543333 3456778899999999999999999999999962111 47777
Q ss_pred eEEEEECCcEEEEEeecC-------CCchhhHHHHhhhhccccCCCCCCC-ccceeeEEe----e--cCcccccCCcccc
Q psy16304 232 RARVEYGNKYEVFLYDLG-------GSEDFRTIWKQYLGTVSQTPLGRPD-SRTCQVYLI----M--CGVHQVSGIPDEL 297 (537)
Q Consensus 232 ~~~i~i~g~~~i~~~D~~-------G~~~~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~----D--s~~~~~~~l~~~l 297 (537)
+|.+.+ ..+...++. ............+++++|.+.+... ......... + ....++..+.+.+
T Consensus 236 --~I~~~~-Q~~~g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 312 (718)
T PLN03073 236 --QILHVE-QEVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRL 312 (718)
T ss_pred --EEEEEe-ccCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHH
Confidence 555432 111111110 0011112234456777776442211 000000000 0 0001222223333
Q ss_pred cccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHHHHH-HH
Q psy16304 298 TSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRTIW-KQ 374 (537)
Q Consensus 298 ~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~l~-~~ 374 (537)
...+.+....++...+..+|+........+.+|||||++|+ +++++++. + |++++|| |+|++.....| ..
T Consensus 313 ~~~~~~~~~~r~~~~L~~lgl~~~~~~~~~~~LSgG~k~rv----~LA~aL~~-~--p~lLlLDEPt~~LD~~~~~~l~~ 385 (718)
T PLN03073 313 ELIDAYTAEARAASILAGLSFTPEMQVKATKTFSGGWRMRI----ALARALFI-E--PDLLLLDEPTNHLDLHAVLWLET 385 (718)
T ss_pred HhcCcchHHHHHHHHHHHCCCChHHHhCchhhCCHHHHHHH----HHHHHHhc-C--CCEEEEECCCCCCCHHHHHHHHH
Confidence 33344444455556677888864334555899999999999 99999996 5 8999999 99996665555 66
Q ss_pred HHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccc
Q psy16304 375 YLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKN 415 (537)
Q Consensus 375 ~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkd 415 (537)
+++...++++++ +||+.+...++ ++++++|++..+.++.+
T Consensus 386 ~L~~~~~tviiv-sHd~~~l~~~~d~i~~l~~g~i~~~~g~~~ 427 (718)
T PLN03073 386 YLLKWPKTFIVV-SHAREFLNTVVTDILHLHGQKLVTYKGDYD 427 (718)
T ss_pred HHHHcCCEEEEE-ECCHHHHHHhCCEEEEEECCEEEEeCCCHH
Confidence 666666778888 89999887654 89999999987777764
No 168
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.78 E-value=2.3e-20 Score=187.76 Aligned_cols=224 Identities=12% Similarity=0.043 Sum_probs=136.8
Q ss_pred hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCc---e
Q psy16304 152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPT---V 228 (537)
Q Consensus 152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt---~ 228 (537)
++.++++.+.|++... ..++++.+.+|++++|+|+||||||||+++|+|. +.|+ .
T Consensus 4 ~l~~~nl~~~~~~~~i------------------l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~----~~p~~~~~ 61 (262)
T PRK09984 4 IIRVEKLAKTFNQHQA------------------LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGL----ITGDKSAG 61 (262)
T ss_pred EEEEeeEEEEeCCeEE------------------EecceEEEcCCcEEEEECCCCCCHHHHHHHHhcc----CCCCCCCc
Confidence 5677888887653222 2345677889999999999999999999999999 8776 4
Q ss_pred eeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcc-cccccCcCCccc
Q psy16304 229 GFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPD-ELTSATHLPLVD 307 (537)
Q Consensus 229 G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~-~l~~~~~l~~~~ 307 (537)
| +|.++| ..+...+... .. ...++..+++++|++.+++..+..-.+.+.. ... ..... ....... ....
T Consensus 62 G----~i~~~g-~~~~~~~~~~-~~-~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~-~~~-~~~~~~~~~~~~~-~~~~ 131 (262)
T PRK09984 62 S----HIELLG-RTVQREGRLA-RD-IRKSRANTGYIFQQFNLVNRLSVLENVLIGA-LGS-TPFWRTCFSWFTR-EQKQ 131 (262)
T ss_pred e----EEEECC-Eecccccccc-hh-HHHHHhheEEEccccccccCCcHHHHHHhhh-ccc-ccchhhhcccccH-HHHH
Confidence 8 888887 4442211000 01 1223467899999987655432210000000 000 00000 0000000 0011
Q ss_pred cCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCC
Q psy16304 308 FRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVS 380 (537)
Q Consensus 308 ~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~ 380 (537)
+....+..+|+... ....+.+||+||+||+ +++++++. + |+++++| |+|++.. ...+..+.++.+
T Consensus 132 ~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrv----~laral~~-~--p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g 203 (262)
T PRK09984 132 RALQALTRVGMVHF-AHQRVSTLSGGQQQRV----AIARALMQ-Q--AKVILADEPIASLDPESARIVMDTLRDINQNDG 203 (262)
T ss_pred HHHHHHHHcCCHHH-HhCCccccCHHHHHHH----HHHHHHhc-C--CCEEEecCccccCCHHHHHHHHHHHHHHHHhcC
Confidence 22334445677543 3455889999999999 99999996 5 8999999 9999332 223334333334
Q ss_pred EEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccch
Q psy16304 381 QTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 381 ~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl 416 (537)
.+++++ +|+.......+ ++++++|+++..+...++
T Consensus 204 ~tvii~-tH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 204 ITVVVT-LHQVDYALRYCERIVALRQGHVFYDGSSQQF 240 (262)
T ss_pred CEEEEE-eCCHHHHHHhCCEEEEEECCEEEEeCCHHHh
Confidence 567777 89988765433 889999999887766554
No 169
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.78 E-value=1.5e-20 Score=189.79 Aligned_cols=198 Identities=16% Similarity=0.148 Sum_probs=128.6
Q ss_pred cccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcc
Q psy16304 186 PTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTV 265 (537)
Q Consensus 186 ~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v 265 (537)
..++++.+.+|++++|+|+||||||||+++|+|. ..|++| ++.++| ..+..++. .....++..++++
T Consensus 28 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~p~sG----~i~~~g-~~~~~~~~----~~~~~~~~~i~~v 94 (268)
T PRK10419 28 LNNVSLSLKSGETVALLGRSGCGKSTLARLLVGL----ESPSQG----NVSWRG-EPLAKLNR----AQRKAFRRDIQMV 94 (268)
T ss_pred EeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCc----EEEECC-EeccccCh----hHHHHHHhcEEEE
Confidence 3456788889999999999999999999999999 899999 899887 44322211 1111234679999
Q ss_pred ccCCC--CCCCccceeeEEeecCcccccCCcccccccCcCC---ccccCCccEEEeccCccCccchhhhhcCCCceeeec
Q psy16304 266 SQTPL--GRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVP 340 (537)
Q Consensus 266 ~Q~~~--l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ 340 (537)
+|++. +....+. .+ .+...+....... ........+..+|+........+..||+||+||+
T Consensus 95 ~q~~~~~~~~~~t~-----~~-------~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl-- 160 (268)
T PRK10419 95 FQDSISAVNPRKTV-----RE-------IIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRV-- 160 (268)
T ss_pred EcChhhccCCCCCH-----HH-------HHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHH--
Confidence 99863 2111111 00 0000000000000 0011223344556642222445789999999999
Q ss_pred ccccccceeccCCceEEEEEe--cCchhh-----HHHHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEe
Q psy16304 341 TVGFNRARVEYGNKYEVFLYD--LGGSED-----FRTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLI 411 (537)
Q Consensus 341 ti~la~all~~~e~p~lllLD--T~Gl~~-----~~~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g 411 (537)
+++++++. + |+++++| |+|++. ....++.+.+..+.+++++ +|+......++ ++++++|+++..+
T Consensus 161 --~laral~~-~--p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiiv-sH~~~~i~~~~d~i~~l~~G~i~~~g 234 (268)
T PRK10419 161 --CLARALAV-E--PKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFI-THDLRLVERFCQRVMVMDNGQIVETQ 234 (268)
T ss_pred --HHHHHHhc-C--CCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEE-ECCHHHHHHhCCEEEEEECCEEeeeC
Confidence 99999997 5 8999999 999943 3334455544445677777 89988876533 8889999998888
Q ss_pred cccch
Q psy16304 412 SAKNL 416 (537)
Q Consensus 412 ~nkdl 416 (537)
.+.++
T Consensus 235 ~~~~~ 239 (268)
T PRK10419 235 PVGDK 239 (268)
T ss_pred Chhhc
Confidence 77665
No 170
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.78 E-value=2.7e-20 Score=204.42 Aligned_cols=208 Identities=15% Similarity=0.100 Sum_probs=137.0
Q ss_pred hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304 152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN 231 (537)
Q Consensus 152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t 231 (537)
++.++++.+.|+...+. .+++|.+.+|++++|+|+||||||||+++|+|. +.|++|
T Consensus 11 ~l~~~~l~~~~~~~~il------------------~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl----~~p~~G-- 66 (510)
T PRK15439 11 LLCARSISKQYSGVEVL------------------KGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGI----VPPDSG-- 66 (510)
T ss_pred eEEEEeEEEEeCCceee------------------eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCce--
Confidence 56788888877643222 335677889999999999999999999999999 999999
Q ss_pred eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCc
Q psy16304 232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSV 311 (537)
Q Consensus 232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~ 311 (537)
+|.++| ..+... . .....+..+++++|++.++...+.. +++...+. .......+...
T Consensus 67 --~i~~~g-~~~~~~-----~-~~~~~~~~i~~v~q~~~~~~~~tv~------------e~l~~~~~--~~~~~~~~~~~ 123 (510)
T PRK15439 67 --TLEIGG-NPCARL-----T-PAKAHQLGIYLVPQEPLLFPNLSVK------------ENILFGLP--KRQASMQKMKQ 123 (510)
T ss_pred --EEEECC-EECCCC-----C-HHHHHhCCEEEEeccCccCCCCcHH------------HHhhcccc--cchHHHHHHHH
Confidence 888887 433211 1 1111224589999997755443321 00000000 00000011223
Q ss_pred cEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHHH--HH---HHHHhcCCEEEE
Q psy16304 312 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRT--IW---KQYLGTVSQTLL 384 (537)
Q Consensus 312 ~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~--l~---~~~~~~~~~vIl 384 (537)
.+..+|+.... ...+.+|||||+||+ +++++++. + |++++|| |+|++.... ++ ..+.+. +.+++
T Consensus 124 ~l~~~~l~~~~-~~~~~~LSgG~~qrv----~la~aL~~-~--p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii 194 (510)
T PRK15439 124 LLAALGCQLDL-DSSAGSLEVADRQIV----EILRGLMR-D--SRILILDEPTASLTPAETERLFSRIRELLAQ-GVGIV 194 (510)
T ss_pred HHHHcCCCccc-cCChhhCCHHHHHHH----HHHHHHHc-C--CCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEE
Confidence 34456776443 455899999999999 99999996 5 8999999 999943322 22 333333 45666
Q ss_pred EEeCCCcchhhhhh--hhhhcCCcEEEEecccch
Q psy16304 385 VSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 385 Vvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl 416 (537)
++ +||.......+ ++++++|+++..+...++
T Consensus 195 iv-tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (510)
T PRK15439 195 FI-SHKLPEIRQLADRISVMRDGTIALSGKTADL 227 (510)
T ss_pred EE-eCCHHHHHHhCCEEEEEECCEEEEecChHHc
Confidence 66 89988776543 899999999887766554
No 171
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=2.5e-20 Score=181.76 Aligned_cols=189 Identities=15% Similarity=0.109 Sum_probs=120.1
Q ss_pred cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304 188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ 267 (537)
Q Consensus 188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q 267 (537)
++++.+.+ ++++|+|+||||||||+++|+|. +.|++| ++.++| ..+..... .... ...+..+++++|
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~----~~~~~G----~i~~~g-~~~~~~~~--~~~~-~~~~~~i~~~~q 82 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGL----EKPDGG----TIVLNG-TVLFDSRK--KINL-PPQQRKIGLVFQ 82 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCC----CCCCCc----eEEECC-Eecccccc--hhhh-hhHhhcEEEEec
Confidence 45677889 99999999999999999999999 999999 888887 44321110 0011 122367899999
Q ss_pred CCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccc
Q psy16304 268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA 347 (537)
Q Consensus 268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~a 347 (537)
++.++...+.. + ++..............+....+..+|+.... ...+.+|||||+||+ +++++
T Consensus 83 ~~~~~~~~t~~-----~-------~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv----~la~a 145 (214)
T cd03297 83 QYALFPHLNVR-----E-------NLAFGLKRKRNREDRISVDELLDLLGLDHLL-NRYPAQLSGGEKQRV----ALARA 145 (214)
T ss_pred CCccCCCCCHH-----H-------HHHHHHhhCCHHHHHHHHHHHHHHcCCHhHh-hcCcccCCHHHHHHH----HHHHH
Confidence 98765432220 0 0000000000000001122234456665433 344789999999999 99999
Q ss_pred eeccCCceEEEEEe--cCchhhH--HHH---HHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEE
Q psy16304 348 RVEYGNKYEVFLYD--LGGSEDF--RTI---WKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYL 410 (537)
Q Consensus 348 ll~~~e~p~lllLD--T~Gl~~~--~~l---~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~ 410 (537)
++. + |+++++| |+|++.. ..+ +.++.++.+.+++++ +|+.......+ ++++++|+++..
T Consensus 146 l~~-~--p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~-sH~~~~~~~~~d~i~~l~~G~i~~~ 213 (214)
T cd03297 146 LAA-Q--PELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFV-THDLSEAEYLADRIVVMEDGRLQYI 213 (214)
T ss_pred Hhc-C--CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEE-ecCHHHHHHhcCEEEEEECCEEEec
Confidence 996 5 8999999 9999333 222 233333334566777 89988776433 888999998654
No 172
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.78 E-value=1.3e-20 Score=183.60 Aligned_cols=186 Identities=17% Similarity=0.172 Sum_probs=118.4
Q ss_pred ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304 187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS 266 (537)
Q Consensus 187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~ 266 (537)
.++++.+.+|++++|+|+||||||||+++|+|. ..|+.| ++.++| .++...+. .....++..+++++
T Consensus 18 ~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~----~~~~~G----~i~~~g-~~i~~~~~----~~~~~~~~~i~~v~ 84 (214)
T cd03292 18 DGINISISAGEFVFLVGPSGAGKSTLLKLIYKE----ELPTSG----TIRVNG-QDVSDLRG----RAIPYLRRKIGVVF 84 (214)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC----CCCCce----EEEECC-EEcccCCH----HHHHHHHHheEEEe
Confidence 345677889999999999999999999999999 899999 898887 44322110 11122346799999
Q ss_pred cCCCCCCCccceeeEEeecCcccccCCcccccccC--cCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccccc
Q psy16304 267 QTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSAT--HLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF 344 (537)
Q Consensus 267 Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~--~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~l 344 (537)
|++.+++..+.. +++........ .-....+....+..+|+.... ...+.+|||||+||+ ++
T Consensus 85 q~~~~~~~~t~~------------~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv----~l 147 (214)
T cd03292 85 QDFRLLPDRNVY------------ENVAFALEVTGVPPREIRKRVPAALELVGLSHKH-RALPAELSGGEQQRV----AI 147 (214)
T ss_pred cCchhccCCcHH------------HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHh-hCChhhcCHHHHHHH----HH
Confidence 998765432220 00000000000 000001112233455665443 445889999999999 99
Q ss_pred ccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcE
Q psy16304 345 NRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQ 407 (537)
Q Consensus 345 a~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~i 407 (537)
+++++. + |+++++| |+|++.. ...++++.++ +.+++++ +|+....... + ++++++|++
T Consensus 148 aral~~-~--p~llllDEPt~~LD~~~~~~~~~~l~~~~~~-~~tiiiv-tH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 148 ARAIVN-S--PTILIADEPTGNLDPDTTWEIMNLLKKINKA-GTTVVVA-THAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHc-C--CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHc-CCEEEEE-eCCHHHHHHhCCEEEEEeCCcC
Confidence 999996 5 8999999 9999332 2223343333 4566666 8888877653 3 777777753
No 173
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.78 E-value=2.5e-20 Score=205.55 Aligned_cols=237 Identities=15% Similarity=0.097 Sum_probs=148.3
Q ss_pred hhhHHHHHhhhcccccccccccccccCccccccccCCCCCCchhHHHHHHHHHHHHhhhcccccCCCcccCCCCCCCCCc
Q psy16304 94 AEIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAPTFEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDDPAP 173 (537)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~~~~~~ 173 (537)
....|+..+...+++++....+.+++.++++.+....++..+... ... .....+.+++++..|++.. +
T Consensus 282 ~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~----~~~--~~~~~I~~~~vsf~Y~~~~----~-- 349 (529)
T TIGR02868 282 AAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGVVPAAG----ALG--LGKPTLELRDLSFGYPGSP----P-- 349 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCc----ccC--CCCceEEEEEEEEecCCCC----c--
Confidence 456788888888899999999999999888754332111111000 000 0012356677777665321 0
Q ss_pred chhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCch
Q psy16304 174 TFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSED 253 (537)
Q Consensus 174 ~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~ 253 (537)
.-.++++.+++|++++|+|++|||||||+++|+|. ++|++| +|.++| .++..+
T Consensus 350 -----------vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~----~~p~~G----~I~i~g-~~i~~~------- 402 (529)
T TIGR02868 350 -----------VLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGL----LDPLQG----EVTLDG-VSVSSL------- 402 (529)
T ss_pred -----------eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcC----CCCCCc----EEEECC-EEhhhH-------
Confidence 12345688889999999999999999999999999 999999 999987 555432
Q ss_pred hhHHHHhhhhccccCCCCCCC-ccceeeEEee-cCcccccCCcccc---cccCcCCccccCCccEEEeccCccCccchhh
Q psy16304 254 FRTIWKQYLGTVSQTPLGRPD-SRTCQVYLIM-CGVHQVSGIPDEL---TSATHLPLVDFRSVPILVLGLDNAGKSSIIK 328 (537)
Q Consensus 254 ~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~D-s~~~~~~~l~~~l---~~~~~l~~~~~~~~~L~llGl~~~gKs~li~ 328 (537)
...+++.+++|+|++.++.. ..+++.+.-+ .+.++..++.+.. +.+..++... -..+|..+ .
T Consensus 403 -~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~Gl-----dT~ige~G-------~ 469 (529)
T TIGR02868 403 -QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGL-----DTVLGEGG-------A 469 (529)
T ss_pred -HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccc-----cchhcccc-------C
Confidence 24445889999999998876 4444443211 2222211111110 0111111100 01233222 3
Q ss_pred hhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHHH--HHHHHHhc-CCEEEEEEeCCC
Q psy16304 329 RILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRT--IWKQYLGT-VSQTLLVSHSLS 390 (537)
Q Consensus 329 ~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~--l~~~~~~~-~~~vIlVvdshd 390 (537)
.|||||+||+ ++||+++. + |++++|| |++++...+ +.+.+.+. .+.+++++ +|+
T Consensus 470 ~LSGGQrQRi----aiARall~-~--~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiI-tHr 528 (529)
T TIGR02868 470 RLSGGERQRL----ALARALLA-D--APILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVI-THH 528 (529)
T ss_pred cCCHHHHHHH----HHHHHHhc-C--CCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEE-ecC
Confidence 4999999999 99999996 4 8999999 999944433 33444443 23466666 664
No 174
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.78 E-value=1.8e-20 Score=185.99 Aligned_cols=199 Identities=13% Similarity=0.049 Sum_probs=120.8
Q ss_pred ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccc--cCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhc
Q psy16304 187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISL--VPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGT 264 (537)
Q Consensus 187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~--~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~ 264 (537)
.++++.+.+|++++|+|+||||||||+++|+|. . .|++| +|.++| ..+...+ .....+..+++
T Consensus 17 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~~~~~~G----~i~~~g-~~~~~~~------~~~~~~~~i~~ 81 (243)
T TIGR01978 17 KGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGH----PSYEVTSG----TILFKG-QDLLELE------PDERARAGLFL 81 (243)
T ss_pred eccceEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCCcc----eEEECC-EecCCCC------HHHhhccceEe
Confidence 345677889999999999999999999999998 6 58999 898887 4332111 11111234788
Q ss_pred cccCCCCCCCccce--eeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhh-hhcCCCceeeecc
Q psy16304 265 VSQTPLGRPDSRTC--QVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIK-RILGEPIISLVPT 341 (537)
Q Consensus 265 v~Q~~~l~~~~~~~--il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~-~LSgG~rqrvs~t 341 (537)
++|++.+++..+.. +.+.... ...... ...........+....+..+|+........+. .|||||+||+
T Consensus 82 v~q~~~~~~~~t~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl--- 153 (243)
T TIGR01978 82 AFQYPEEIPGVSNLEFLRSALNA----RRSARG-EEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRN--- 153 (243)
T ss_pred eeccccccCCcCHHHHHHHHHHH----hhcccc-cccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHH---
Confidence 99998765433220 0000000 000000 00000000001122334456665322233355 5999999999
Q ss_pred cccccceeccCCceEEEEEe--cCchhhHH-----HHHHHHHhcCCEEEEEEeCCCcchhhhh--h-hhhhcCCcEEEEe
Q psy16304 342 VGFNRARVEYGNKYEVFLYD--LGGSEDFR-----TIWKQYLGTVSQTLLVSHSLSGRPDDRC--Q-VYLMSCNCQVYLI 411 (537)
Q Consensus 342 i~la~all~~~e~p~lllLD--T~Gl~~~~-----~l~~~~~~~~~~vIlVvdshd~~~~~~~--~-i~ll~~G~ii~~g 411 (537)
+++++++. + |++++|| |+|++... ..+..+.+ .+.+++++ +|+....... + ++++++|+++..+
T Consensus 154 -~la~al~~-~--p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~v-sH~~~~~~~~~~d~i~~l~~G~i~~~g 227 (243)
T TIGR01978 154 -EILQMALL-E--PKLAILDEIDSGLDIDALKIVAEGINRLRE-PDRSFLII-THYQRLLNYIKPDYVHVLLDGRIVKSG 227 (243)
T ss_pred -HHHHHHhc-C--CCEEEecCCcccCCHHHHHHHHHHHHHHHH-CCcEEEEE-EecHHHHHhhcCCeEEEEeCCEEEEec
Confidence 99999996 5 8999999 99994332 22233332 23566666 8888877653 3 8889999998776
Q ss_pred ccc
Q psy16304 412 SAK 414 (537)
Q Consensus 412 ~nk 414 (537)
...
T Consensus 228 ~~~ 230 (243)
T TIGR01978 228 DVE 230 (243)
T ss_pred CHH
Confidence 554
No 175
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=3.1e-20 Score=188.81 Aligned_cols=218 Identities=15% Similarity=0.111 Sum_probs=137.2
Q ss_pred hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304 152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN 231 (537)
Q Consensus 152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t 231 (537)
++.++++.+.|+...-... ..+-.++++.+.+|++++|+|+||||||||+++|+|. +.|+.|
T Consensus 4 ~l~~~~l~~~~~~~~~~~~------------~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl----~~~~~G-- 65 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTE------------KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNAL----LIPSEG-- 65 (280)
T ss_pred eEEEeeeEEEcCCCCCCCC------------cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCc--
Confidence 5678888888753210000 0123345677889999999999999999999999999 999999
Q ss_pred eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC---cccc
Q psy16304 232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDF 308 (537)
Q Consensus 232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~ 308 (537)
+|.++| ..+. ... . ....+..+++++|++........ +.+ ++....... ... ....
T Consensus 66 --~i~i~g-~~i~---~~~--~-~~~~~~~i~~v~q~~~~~~~~~~----v~~-------~l~~~~~~~-~~~~~~~~~~ 124 (280)
T PRK13633 66 --KVYVDG-LDTS---DEE--N-LWDIRNKAGMVFQNPDNQIVATI----VEE-------DVAFGPENL-GIPPEEIRER 124 (280)
T ss_pred --eEEECC-Eecc---ccc--c-HHHHhhheEEEecChhhhhcccc----HHH-------HHHhhHhhc-CCCHHHHHHH
Confidence 999987 4432 111 0 11223678999998641110000 000 000000000 000 0111
Q ss_pred CCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH--H---HHHHHHHhcCCE
Q psy16304 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--R---TIWKQYLGTVSQ 381 (537)
Q Consensus 309 ~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~---~l~~~~~~~~~~ 381 (537)
....+..+|+.... ...+.+|||||+||+ +++++++. + |+++++| |+|++.. . ..+..+.++.+.
T Consensus 125 ~~~~l~~~gL~~~~-~~~~~~LS~G~~qrv----~laral~~-~--p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~ 196 (280)
T PRK13633 125 VDESLKKVGMYEYR-RHAPHLLSGGQKQRV----AIAGILAM-R--PECIIFDEPTAMLDPSGRREVVNTIKELNKKYGI 196 (280)
T ss_pred HHHHHHHCCCHhHh-hCCcccCCHHHHHHH----HHHHHHHc-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 22334466776543 455899999999999 99999996 5 8999999 9999322 2 233343333345
Q ss_pred EEEEEeCCCcchhhhhh-hhhhcCCcEEEEecccchh
Q psy16304 382 TLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLISAKNLS 417 (537)
Q Consensus 382 vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g~nkdl~ 417 (537)
+++++ +|+......++ ++++++|+++..+.+.++.
T Consensus 197 tillv-tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 197 TIILI-THYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred EEEEE-ecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 66666 78877766544 8889999999888877663
No 176
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=2.4e-20 Score=187.29 Aligned_cols=210 Identities=12% Similarity=0.088 Sum_probs=132.1
Q ss_pred hhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccC----
Q psy16304 151 ILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVP---- 226 (537)
Q Consensus 151 ~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~P---- 226 (537)
.++.++++.+.|++... -.++++.+.+|++++|+|+||||||||+++|+|. ..|
T Consensus 11 ~~l~~~~l~~~~~~~~i------------------l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl----~~~~~~~ 68 (258)
T PRK14268 11 PQIKVENLNLWYGEKQA------------------LKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRM----NDLIKNC 68 (258)
T ss_pred eeEEEeeeEEEeCCeee------------------eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC----CCcccCC
Confidence 45677788776653222 2345677889999999999999999999999998 664
Q ss_pred -ceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCc
Q psy16304 227 -TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPL 305 (537)
Q Consensus 227 -t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~ 305 (537)
++| +|.++| ..+..++. . ...++..+++++|++.++. .+. .+ ++..... ......
T Consensus 69 ~~~G----~i~~~g-~~i~~~~~---~--~~~~~~~i~~v~q~~~~~~-~tv-----~e-------nl~~~~~-~~~~~~ 124 (258)
T PRK14268 69 RIEG----KVSIEG-EDIYEPDV---D--VVELRKNVGMVFQKPNPFP-MSI-----YD-------NVAYGPR-IHGANK 124 (258)
T ss_pred Ccce----EEEECC-EEcccccc---h--HHHHhhhEEEEecCCccCc-ccH-----HH-------HHHHHHH-HcCCCH
Confidence 899 899887 44432111 0 1122367999999977553 221 01 0000000 000000
Q ss_pred ---cccCCccEEEeccCc---cCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHHH--H---H
Q psy16304 306 ---VDFRSVPILVLGLDN---AGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRT--I---W 372 (537)
Q Consensus 306 ---~~~~~~~L~llGl~~---~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~--l---~ 372 (537)
.......+..+|+.+ ......+..|||||+||+ +++++++. + |+++++| |+|++.... + +
T Consensus 125 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv----~laral~~-~--p~llllDEPt~~LD~~~~~~l~~~l 197 (258)
T PRK14268 125 KDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRL----CIARTLAV-K--PKIILFDEPTSALDPISTARIEDLI 197 (258)
T ss_pred HHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHH----HHHHHHHc-C--CCEEEEeCCCcccCHHHHHHHHHHH
Confidence 001112223344321 112344789999999999 99999997 5 8999999 999933322 2 2
Q ss_pred HHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEecccch
Q psy16304 373 KQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 373 ~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~nkdl 416 (537)
..+. + +.+++++ +|+....... + ++++++|+++..+.++++
T Consensus 198 ~~l~-~-~~tiiiv-sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 240 (258)
T PRK14268 198 MNLK-K-DYTIVIV-THNMQQAARISDYTGFFLMGELIEFGQTRQI 240 (258)
T ss_pred HHHh-h-CCEEEEE-ECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 3332 2 3566666 8998877553 3 889999999988877766
No 177
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.78 E-value=3.5e-20 Score=205.55 Aligned_cols=212 Identities=16% Similarity=0.159 Sum_probs=136.5
Q ss_pred HHhhhcccccCCCccc-CCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccC
Q psy16304 148 MRGILMGIQNVPNFQT-SSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVP 226 (537)
Q Consensus 148 m~~~li~~~~l~k~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~P 226 (537)
|...++.++++++.|+ ...+. .+++|.+.+|++++|+|+||||||||+++|+|. +.|
T Consensus 2 ~~~~~l~i~~l~~~y~~~~~il------------------~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~----~~p 59 (556)
T PRK11819 2 MAQYIYTMNRVSKVVPPKKQIL------------------KDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGV----DKE 59 (556)
T ss_pred cccEEEEEeeEEEEeCCCCeee------------------eCceEEECCCCEEEEECCCCCCHHHHHHHHhCC----CCC
Confidence 5566889999999886 33222 235677889999999999999999999999999 999
Q ss_pred ceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccc--eeeEEeec-C-------------ccc-
Q psy16304 227 TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRT--CQVYLIMC-G-------------VHQ- 289 (537)
Q Consensus 227 t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~--~il~v~Ds-~-------------~~~- 289 (537)
+.| +|.++++ ..+++++|++.+++..+. .+.+.... . ...
T Consensus 60 ~~G----~i~~~~~-------------------~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (556)
T PRK11819 60 FEG----EARPAPG-------------------IKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPD 116 (556)
T ss_pred CCc----eEEecCC-------------------CEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCc
Confidence 999 7776531 236677776654432211 11000000 0 000
Q ss_pred ---------ccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEE
Q psy16304 290 ---------VSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLY 360 (537)
Q Consensus 290 ---------~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllL 360 (537)
...+.+.+...+.+....+....+..+|+.. ....+.+|||||+||+ +++++++. + |++++|
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~--~~~~~~~LSgGqkqrv----~la~al~~-~--p~vlLL 187 (556)
T PRK11819 117 ADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP--WDAKVTKLSGGERRRV----ALCRLLLE-K--PDMLLL 187 (556)
T ss_pred hhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCc--ccCchhhcCHHHHHHH----HHHHHHhC-C--CCEEEE
Confidence 0000000001111111122233455677743 2455899999999999 99999996 5 899999
Q ss_pred e--cCchhhHHHHH-HHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEeccc
Q psy16304 361 D--LGGSEDFRTIW-KQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAK 414 (537)
Q Consensus 361 D--T~Gl~~~~~l~-~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nk 414 (537)
| |+|++.....| .++++...++++++ +|+......++ ++++++|+++.+.++.
T Consensus 188 DEPt~~LD~~~~~~l~~~L~~~~~tviii-sHd~~~~~~~~d~i~~l~~g~i~~~~g~~ 245 (556)
T PRK11819 188 DEPTNHLDAESVAWLEQFLHDYPGTVVAV-THDRYFLDNVAGWILELDRGRGIPWEGNY 245 (556)
T ss_pred cCCCCcCChHHHHHHHHHHHhCCCeEEEE-eCCHHHHHhhcCeEEEEeCCEEEEecCCH
Confidence 9 99996554444 55555545677777 89998887654 8999999987554544
No 178
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.78 E-value=1e-19 Score=178.48 Aligned_cols=185 Identities=18% Similarity=0.143 Sum_probs=133.0
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCC
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPD 274 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~ 274 (537)
..-+.+|.|++|||||||+|+|+|. ..|+.| .|.++| .. +.|.... -+-...++.+|||||+..+|++
T Consensus 23 ~~GvTAlFG~SGsGKTslin~IaGL----~rPdeG----~I~lng-r~--L~Ds~k~-i~lp~~~RriGYVFQDARLFpH 90 (352)
T COG4148 23 ARGITALFGPSGSGKTSLINMIAGL----TRPDEG----RIELNG-RV--LVDAEKG-IFLPPEKRRIGYVFQDARLFPH 90 (352)
T ss_pred CCceEEEecCCCCChhhHHHHHhcc----CCcccc----EEEECC-EE--eecccCC-cccChhhheeeeEeeccccccc
Confidence 3367899999999999999999999 999999 999998 32 3344221 1223344789999999999988
Q ss_pred ccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCc
Q psy16304 275 SRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNK 354 (537)
Q Consensus 275 ~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~ 354 (537)
++. ..++....... ....-+..+.++|+.+.. ..++.+||||++||| ++.+|++. +
T Consensus 91 ~tV------------rgNL~YG~~~~----~~~~fd~iv~lLGI~hLL-~R~P~~LSGGEkQRV----AIGRALLt-~-- 146 (352)
T COG4148 91 YTV------------RGNLRYGMWKS----MRAQFDQLVALLGIEHLL-DRYPGTLSGGEKQRV----AIGRALLT-A-- 146 (352)
T ss_pred eEE------------ecchhhhhccc----chHhHHHHHHHhCcHHHH-hhCCCccCcchhhHH----HHHHHHhc-C--
Confidence 766 12222111111 011112345578888776 455999999999999 99999997 5
Q ss_pred eEEEEEe--cCch-----hhHHHHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccch
Q psy16304 355 YEVFLYD--LGGS-----EDFRTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 355 p~lllLD--T~Gl-----~~~~~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl 416 (537)
|+++++| .+.+ .+....++.+.++.+.-|+-+ +|..++..... +++|++|++.+.|...+.
T Consensus 147 P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYV-SHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v 216 (352)
T COG4148 147 PELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYV-SHSLDEVLRLADRVVVLENGKVKASGPLEEV 216 (352)
T ss_pred CCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEE-ecCHHHHHhhhheEEEecCCeEEecCcHHHH
Confidence 8999999 6666 334445577777777755555 67777776554 999999999999887765
No 179
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.78 E-value=4e-20 Score=180.11 Aligned_cols=181 Identities=19% Similarity=0.141 Sum_probs=113.4
Q ss_pred ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304 187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS 266 (537)
Q Consensus 187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~ 266 (537)
.++++.+.+|++++|+|+||||||||+++|+|. ..|+.| +|.++| ..+. .++..+++++
T Consensus 16 ~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~----~~p~~G----~i~~~g-~~~~------------~~~~~i~~v~ 74 (213)
T cd03235 16 EDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGL----LKPTSG----SIRVFG-KPLE------------KERKRIGYVP 74 (213)
T ss_pred ecceeEEcCCCEEEEECCCCCCHHHHHHHHcCC----CCCCCC----EEEECC-ccHH------------HHHhheEEec
Confidence 345677889999999999999999999999999 899999 888876 2221 1235789999
Q ss_pred cCCCCCCCccceeeEEeecCcccccC-CcccccccCcCC--ccccCCccEEEeccCccCccchhhhhcCCCceeeecccc
Q psy16304 267 QTPLGRPDSRTCQVYLIMCGVHQVSG-IPDELTSATHLP--LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG 343 (537)
Q Consensus 267 Q~~~l~~~~~~~il~v~Ds~~~~~~~-l~~~l~~~~~l~--~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~ 343 (537)
|++.+...... .+.+ .... ............ ...+....+..+|+.... ...+.+|||||+||+ +
T Consensus 75 q~~~~~~~~~~---tv~e----~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgG~~qrv----~ 142 (213)
T cd03235 75 QRRSIDRDFPI---SVRD----VVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELA-DRQIGELSGGQQQRV----L 142 (213)
T ss_pred cccccccCCCC---cHHH----HHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHH-hCCcccCCHHHHHHH----H
Confidence 98764211000 0111 0000 000000000000 001122334456665433 344889999999999 9
Q ss_pred cccceeccCCceEEEEEe--cCchhhH--H---HHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCC
Q psy16304 344 FNRARVEYGNKYEVFLYD--LGGSEDF--R---TIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCN 405 (537)
Q Consensus 344 la~all~~~e~p~lllLD--T~Gl~~~--~---~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G 405 (537)
++++++. + |+++++| |+|++.. . ..+.++.+ .+.+++++ +|+..+....+ ++++++|
T Consensus 143 la~al~~-~--p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~~-sH~~~~~~~~~d~i~~l~~~ 208 (213)
T cd03235 143 LARALVQ-D--PDLLLLDEPFAGVDPKTQEDIYELLRELRR-EGMTILVV-THDLGLVLEYFDRVLLLNRT 208 (213)
T ss_pred HHHHHHc-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEE-eCCHHHHHHhcCEEEEEcCc
Confidence 9999996 5 8999999 9999333 2 22334333 34566666 89988776543 7777765
No 180
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.78 E-value=3.3e-20 Score=183.23 Aligned_cols=186 Identities=17% Similarity=0.089 Sum_probs=121.3
Q ss_pred cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304 188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ 267 (537)
Q Consensus 188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q 267 (537)
++++.+.+|++++|+|+||||||||+++|+|. ..|++| ++.++| .++... . ...++++|
T Consensus 3 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~p~~G----~i~~~g-~~~~~~--------~----~~~~~v~q 61 (230)
T TIGR01184 3 GVNLTIQQGEFISLIGHSGCGKSTLLNLISGL----AQPTSG----GVILEG-KQITEP--------G----PDRMVVFQ 61 (230)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCc----eEEECC-EECCCC--------C----hhheEEec
Confidence 35677889999999999999999999999999 999999 888887 433110 0 11378899
Q ss_pred CCCCCCCccceeeEEeecCcccccCCccccc-ccCcCCc---cccCCccEEEeccCccCccchhhhhcCCCceeeecccc
Q psy16304 268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELT-SATHLPL---VDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG 343 (537)
Q Consensus 268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~-~~~~l~~---~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~ 343 (537)
++.++...+.. +++...+. ....... .......+..+|+.... ...+.+|||||+||+ +
T Consensus 62 ~~~l~~~~tv~------------e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgG~~qrv----~ 124 (230)
T TIGR01184 62 NYSLLPWLTVR------------ENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAA-DKRPGQLSGGMKQRV----A 124 (230)
T ss_pred CcccCCCCCHH------------HHHHHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHH-cCChhhCCHHHHHHH----H
Confidence 87755433220 00000000 0000100 01112234456766433 445889999999999 9
Q ss_pred cccceeccCCceEEEEEe--cCchhhH--HHHH---HHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEeccc
Q psy16304 344 FNRARVEYGNKYEVFLYD--LGGSEDF--RTIW---KQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAK 414 (537)
Q Consensus 344 la~all~~~e~p~lllLD--T~Gl~~~--~~l~---~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nk 414 (537)
++++++. + |+++++| |+|++.. ..++ ..+.++.+.+++++ +|+.......+ ++++++|+++..+...
T Consensus 125 la~al~~-~--p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~-sH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 200 (230)
T TIGR01184 125 IARALSI-R--PKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMV-THDVDEALLLSDRVVMLTNGPAANIGQIL 200 (230)
T ss_pred HHHHHHc-C--CCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhcCEEEEEeCCcEecccCce
Confidence 9999996 5 8999999 9999332 2233 33333334567777 89988765533 8899999998766543
Q ss_pred c
Q psy16304 415 N 415 (537)
Q Consensus 415 d 415 (537)
.
T Consensus 201 ~ 201 (230)
T TIGR01184 201 E 201 (230)
T ss_pred e
Confidence 3
No 181
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=2.6e-20 Score=190.19 Aligned_cols=197 Identities=13% Similarity=0.085 Sum_probs=123.5
Q ss_pred ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEE-eecCCCchhhHHHHhhhhcc
Q psy16304 187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFL-YDLGGSEDFRTIWKQYLGTV 265 (537)
Q Consensus 187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~-~D~~G~~~~r~~~~~~i~~v 265 (537)
.++++.+.+|++++|+|+||||||||+++|+|. +.|++| ++.++| ..+.. .... .. ...++..++++
T Consensus 28 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl----~~p~~G----~i~~~g-~~i~~~~~~~--~~-~~~~~~~i~~v 95 (289)
T PRK13645 28 NNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGL----IISETG----QTIVGD-YAIPANLKKI--KE-VKRLRKEIGLV 95 (289)
T ss_pred eeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC----CCCCCc----eEEECC-EEcccccccc--cc-HHHHhccEEEE
Confidence 345677889999999999999999999999999 999999 888886 44321 0000 00 11233578999
Q ss_pred ccCCC--CCCCccceeeEEeecCcccccCCccccc--ccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecc
Q psy16304 266 SQTPL--GRPDSRTCQVYLIMCGVHQVSGIPDELT--SATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPT 341 (537)
Q Consensus 266 ~Q~~~--l~~~~~~~il~v~Ds~~~~~~~l~~~l~--~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~t 341 (537)
+|++. ++. .+. .+ ++..... ..............+..+|+........+.+|||||+||+
T Consensus 96 ~q~~~~~~~~-~tv-----~e-------nl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv--- 159 (289)
T PRK13645 96 FQFPEYQLFQ-ETI-----EK-------DIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRV--- 159 (289)
T ss_pred EeCcchhhhh-hHH-----HH-------HHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHH---
Confidence 99863 111 010 00 0000000 0000000001112233556632222445889999999999
Q ss_pred cccccceeccCCceEEEEEe--cCchhhH--HHH---HHHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEec
Q psy16304 342 VGFNRARVEYGNKYEVFLYD--LGGSEDF--RTI---WKQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLIS 412 (537)
Q Consensus 342 i~la~all~~~e~p~lllLD--T~Gl~~~--~~l---~~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~ 412 (537)
+++++++. + |++++|| |+|++.. ..+ +..+.+..+.+++++ +|+....... + ++++++|+++..++
T Consensus 160 -~laral~~-~--p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiii-sH~~~~~~~~~d~i~~l~~G~i~~~g~ 234 (289)
T PRK13645 160 -ALAGIIAM-D--GNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMV-THNMDQVLRIADEVIVMHEGKVISIGS 234 (289)
T ss_pred -HHHHHHHh-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE-ecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999996 5 8999999 9999333 222 234433334567777 8998876543 3 89999999988877
Q ss_pred ccch
Q psy16304 413 AKNL 416 (537)
Q Consensus 413 nkdl 416 (537)
++++
T Consensus 235 ~~~~ 238 (289)
T PRK13645 235 PFEI 238 (289)
T ss_pred HHHH
Confidence 6665
No 182
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.78 E-value=5.8e-20 Score=182.15 Aligned_cols=187 Identities=18% Similarity=0.146 Sum_probs=118.9
Q ss_pred ccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhc
Q psy16304 185 LPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGT 264 (537)
Q Consensus 185 ~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~ 264 (537)
+-.++++.+.+|++++|+|+||||||||+++|+|. ..|++| ++.++| ..+. +. .......+++
T Consensus 36 il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl----~~p~~G----~i~~~g-~~~~--~~------~~~~~~~i~~ 98 (236)
T cd03267 36 ALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGL----LQPTSG----EVRVAG-LVPW--KR------RKKFLRRIGV 98 (236)
T ss_pred eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC----cCCCce----EEEECC-EEcc--cc------chhhcccEEE
Confidence 45567888999999999999999999999999999 999999 999887 3321 11 0112256888
Q ss_pred cc-cCCCCCCCccceeeEEeecCcccccCCcccccccCcCC---ccccCCccEEEeccCccCccchhhhhcCCCceeeec
Q psy16304 265 VS-QTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVP 340 (537)
Q Consensus 265 v~-Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ 340 (537)
++ |...++...+. .+ ++... ..+.... ........+..+|+.... ...+..||+||+||+
T Consensus 99 ~~~~~~~~~~~~tv-----~e-------~l~~~-~~~~~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~LS~G~~qrl-- 162 (236)
T cd03267 99 VFGQKTQLWWDLPV-----ID-------SFYLL-AAIYDLPPARFKKRLDELSELLDLEELL-DTPVRQLSLGQRMRA-- 162 (236)
T ss_pred EcCCccccCCCCcH-----HH-------HHHHH-HHHcCCCHHHHHHHHHHHHHHcCChhHh-cCChhhCCHHHHHHH--
Confidence 87 44443322211 00 00000 0000000 001112223345665433 344889999999999
Q ss_pred ccccccceeccCCceEEEEEe--cCchhhHH-----HHHHHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEE
Q psy16304 341 TVGFNRARVEYGNKYEVFLYD--LGGSEDFR-----TIWKQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYL 410 (537)
Q Consensus 341 ti~la~all~~~e~p~lllLD--T~Gl~~~~-----~l~~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~ 410 (537)
+++++++. + |+++++| |+|++... .++.++.++.+.+++++ +|+....... + ++++++|+++..
T Consensus 163 --~la~al~~-~--p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiv-sH~~~~~~~~~d~i~~l~~G~i~~~ 235 (236)
T cd03267 163 --EIAAALLH-E--PEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLT-SHYMKDIEALARRVLVIDKGRLLYD 235 (236)
T ss_pred --HHHHHHhc-C--CCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEE-ecCHHHHHHhCCEEEEEeCCEEEec
Confidence 99999997 5 8999999 99993332 22233333334567777 8998876653 3 888889987643
No 183
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.78 E-value=3.2e-20 Score=224.02 Aligned_cols=265 Identities=13% Similarity=0.038 Sum_probs=170.5
Q ss_pred HHHHHhhhcccccccccccccccCccccccccCCCCCCc-hhHHHHHHHHHHHHhhhcccccCCCcccCCCCCCCCCcch
Q psy16304 97 WAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAPT-FEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDDPAPTF 175 (537)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~~~~~~~~ 175 (537)
.++..+...+..++.+..+.++++++++.+..++...++ ... ... . -...-+.++++...|+++. .
T Consensus 1114 ~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~---~~~-~-~~~g~I~f~nVsF~Y~~~~-----~--- 1180 (1466)
T PTZ00265 1114 SYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRI---KNK-N-DIKGKIEIMDVNFRYISRP-----N--- 1180 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCccccc---ccC-C-CCCceEEEEEEEEECCCCC-----C---
Confidence 467788888999999999999999998754432111100 000 000 0 0012356777777775421 1
Q ss_pred hhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccC-----------------------------
Q psy16304 176 ENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVP----------------------------- 226 (537)
Q Consensus 176 ~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~P----------------------------- 226 (537)
..+-.+++|.+++|+++||||++|||||||+++|.|. +.|
T Consensus 1181 -------~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~----ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1249 (1466)
T PTZ00265 1181 -------VPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRF----YDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQN 1249 (1466)
T ss_pred -------CccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHh----CCCccccccccccccccccccccccccccccc
Confidence 0123456788899999999999999999999999999 777
Q ss_pred -------------------------ceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCC-ccceee
Q psy16304 227 -------------------------TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPD-SRTCQV 280 (537)
Q Consensus 227 -------------------------t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~-~~~~il 280 (537)
+.| +|.++| .++..++. ..+++.+++|+|++.+|.. ..+++.
T Consensus 1250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G----~I~idG-~di~~~~~-------~~lR~~i~~V~Qep~LF~gTIreNI~ 1317 (1466)
T PTZ00265 1250 VGMKNVNEFSLTKEGGSGEDSTVFKNSG----KILLDG-VDICDYNL-------KDLRNLFSIVSQEPMLFNMSIYENIK 1317 (1466)
T ss_pred cccccccccccccccccccccccCCCCC----eEEECC-EEHHhCCH-------HHHHhhccEeCCCCccccccHHHHHh
Confidence 577 888887 66655554 3344889999999998865 444444
Q ss_pred EEee-cCcccccCCccc---ccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceE
Q psy16304 281 YLIM-CGVHQVSGIPDE---LTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYE 356 (537)
Q Consensus 281 ~v~D-s~~~~~~~l~~~---l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~ 356 (537)
+.-+ .+.+....+.+. .+++..++..... .+|..+ ..|||||+||+ ++|||++. + |+
T Consensus 1318 ~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT-----~VGe~G-------~~LSGGQkQRI----aIARALlr-~--p~ 1378 (1466)
T PTZ00265 1318 FGKEDATREDVKRACKFAAIDEFIESLPNKYDT-----NVGPYG-------KSLSGGQKQRI----AIARALLR-E--PK 1378 (1466)
T ss_pred cCCCCCCHHHHHHHHHHcCCHHHHHhCccccCC-----ccCCCC-------CcCCHHHHHHH----HHHHHHhc-C--CC
Confidence 4322 222111111110 0111222111111 344322 34999999999 99999996 4 89
Q ss_pred EEEEe--cCchhhHHH--HHHHHHhc---CCEEEEEEeCCCcchhhhhh-hhhhcC----CcEE-EEecccchh
Q psy16304 357 VFLYD--LGGSEDFRT--IWKQYLGT---VSQTLLVSHSLSGRPDDRCQ-VYLMSC----NCQV-YLISAKNLS 417 (537)
Q Consensus 357 lllLD--T~Gl~~~~~--l~~~~~~~---~~~vIlVvdshd~~~~~~~~-i~ll~~----G~ii-~~g~nkdl~ 417 (537)
+++|| |++++...+ +.+.+.+. .+.++|++ +|.......++ ++++++ |+++ ..|+.++|.
T Consensus 1379 ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiI-aHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl 1451 (1466)
T PTZ00265 1379 ILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITI-AHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELL 1451 (1466)
T ss_pred EEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEE-echHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHH
Confidence 99999 999944433 33444332 24577777 89988888777 888998 8865 688888874
No 184
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.78 E-value=1.3e-19 Score=169.74 Aligned_cols=215 Identities=15% Similarity=0.123 Sum_probs=136.6
Q ss_pred hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304 152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN 231 (537)
Q Consensus 152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t 231 (537)
++.+++++|.|+...+..+ +++.+.+|.+.+++|||||||||||.+++++ ...++|
T Consensus 1 MI~i~nv~K~y~~~~vl~~------------------isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL----~~~d~G-- 56 (252)
T COG4604 1 MITIENVSKSYGTKVVLDD------------------VSLDIPKGGITSIIGPNGAGKSTLLSMMSRL----LKKDSG-- 56 (252)
T ss_pred CeeehhhhHhhCCEEeecc------------------ceeeecCCceeEEECCCCccHHHHHHHHHHh----ccccCc--
Confidence 4678899999888776655 3455779999999999999999999999999 999999
Q ss_pred eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEee-cCcccccCCcccccccCcCCccccCC
Q psy16304 232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRS 310 (537)
Q Consensus 232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~ 310 (537)
++.++| .++..|+. ..+. +.++.+-|+.......+ |-| ....++-..+..++. +......
T Consensus 57 --~i~i~g-~~~~~~~s---~~LA----k~lSILkQ~N~i~~rlT-----V~dLv~FGRfPYSqGRlt~----eD~~~I~ 117 (252)
T COG4604 57 --EITIDG-LELTSTPS---KELA----KKLSILKQENHINSRLT-----VRDLVGFGRFPYSQGRLTK----EDRRIIN 117 (252)
T ss_pred --eEEEee-eecccCCh---HHHH----HHHHHHHhhchhhheeE-----HHHHhhcCCCcccCCCCch----HHHHHHH
Confidence 999987 77766655 2222 45566556544221111 111 111111111110000 0001122
Q ss_pred ccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCch-----hhHHHHHHHHHhcCC-EE
Q psy16304 311 VPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGS-----EDFRTIWKQYLGTVS-QT 382 (537)
Q Consensus 311 ~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl-----~~~~~l~~~~~~~~~-~v 382 (537)
..+..+++.+. +.+++.+|||||+||. -+|..+.+ + .+..+|| .+.+ ......++...++-+ ++
T Consensus 118 ~aieyl~L~~l-~dryLd~LSGGQrQRA----fIAMVlaQ-d--TdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~Kti 189 (252)
T COG4604 118 EAIEYLHLEDL-SDRYLDELSGGQRQRA----FIAMVLAQ-D--TDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTI 189 (252)
T ss_pred HHHHHhcccch-HHHhHHhcccchhhhh----hhheeeec-c--CcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeE
Confidence 34556666665 4777999999999998 66655554 3 5666666 4444 555666666666544 55
Q ss_pred EEEEeCCCcchhhhhhhhhhcCCcEEEEecccchh
Q psy16304 383 LLVSHSLSGRPDDRCQVYLMSCNCQVYLISAKNLS 417 (537)
Q Consensus 383 IlVvdshd~~~~~~~~i~ll~~G~ii~~g~nkdl~ 417 (537)
++|.|.-+..+.....++.+++|+++..|+++++.
T Consensus 190 viVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii 224 (252)
T COG4604 190 VVVLHDINFASCYSDHIVALKNGKVVKQGSPDEII 224 (252)
T ss_pred EEEEecccHHHhhhhheeeecCCEEEecCCHHHhc
Confidence 55554444444444448899999999999998873
No 185
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.78 E-value=4.8e-20 Score=186.57 Aligned_cols=198 Identities=14% Similarity=0.085 Sum_probs=122.8
Q ss_pred cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCc--------eeeeeEEEEECCcEEEEEeecCCCchhhHHHH
Q psy16304 188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPT--------VGFNRARVEYGNKYEVFLYDLGGSEDFRTIWK 259 (537)
Q Consensus 188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt--------~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~ 259 (537)
++++.+.+|++++|+|+||||||||+++|+|. +.|+ .| +|.++| ..+...+. ....
T Consensus 19 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~----~~p~~~~~~~~~~G----~i~~~g-~~~~~~~~-------~~~~ 82 (272)
T PRK13547 19 DLSLRIEPGRVTALLGRNGAGKSTLLKALAGD----LTGGGAPRGARVTG----DVTLNG-EPLAAIDA-------PRLA 82 (272)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCcccccccCCce----EEEECC-EEcccCCH-------HHHH
Confidence 45677889999999999999999999999999 8887 88 888887 44321111 1122
Q ss_pred hhhhccccCCCCCCCccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceee
Q psy16304 260 QYLGTVSQTPLGRPDSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISL 338 (537)
Q Consensus 260 ~~i~~v~Q~~~l~~~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrv 338 (537)
..+++++|++..+...+. .+ -....... ......... .........+..+|+.... ...+.+|||||+||+
T Consensus 83 ~~~~~v~q~~~~~~~~tv-----~e~l~~~~~~~-~~~~~~~~~-~~~~~~~~~l~~~~l~~~~-~~~~~~LSgG~~qrv 154 (272)
T PRK13547 83 RLRAVLPQAAQPAFAFSA-----REIVLLGRYPH-ARRAGALTH-RDGEIAWQALALAGATALV-GRDVTTLSGGELARV 154 (272)
T ss_pred hhcEEecccCCCCCCCcH-----HHHHhhccccc-ccccccCCH-HHHHHHHHHHHHcCcHhhh-cCCcccCCHHHHHHH
Confidence 457899998653322221 11 00000000 000000000 0001112233355665443 344789999999999
Q ss_pred ecccccccceec--------cCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhh-hh-hhh
Q psy16304 339 VPTVGFNRARVE--------YGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDR-CQ-VYL 401 (537)
Q Consensus 339 s~ti~la~all~--------~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~-~~-i~l 401 (537)
+++++++. .+ |++++|| |+|++.. ...+..+.+....+++++ +|+...... ++ +++
T Consensus 155 ----~laral~~~~~~~~~~~~--p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviii-sH~~~~~~~~~d~i~~ 227 (272)
T PRK13547 155 ----QFARVLAQLWPPHDAAQP--PRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAI-VHDPNLAARHADRIAM 227 (272)
T ss_pred ----HHHHHHhccccccccCCC--CCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEE-ECCHHHHHHhCCEEEE
Confidence 99999994 24 8999999 9999332 223344434334566666 788887754 33 889
Q ss_pred hcCCcEEEEecccch
Q psy16304 402 MSCNCQVYLISAKNL 416 (537)
Q Consensus 402 l~~G~ii~~g~nkdl 416 (537)
+++|+++..+...++
T Consensus 228 l~~G~i~~~g~~~~~ 242 (272)
T PRK13547 228 LADGAIVAHGAPADV 242 (272)
T ss_pred EECCeEEEecCHHHH
Confidence 999999887766555
No 186
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.78 E-value=2.2e-20 Score=209.59 Aligned_cols=199 Identities=14% Similarity=0.081 Sum_probs=133.1
Q ss_pred ccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhc
Q psy16304 185 LPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGT 264 (537)
Q Consensus 185 ~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~ 264 (537)
+..+++|.+.+|++++|+|+||||||||+++|+|. ..|++| +|.++| .++..++. ... ..++..+++
T Consensus 339 ~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl----~~p~~G----~I~~~g-~~i~~~~~---~~~-~~~~~~i~~ 405 (623)
T PRK10261 339 AVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRL----VESQGG----EIIFNG-QRIDTLSP---GKL-QALRRDIQF 405 (623)
T ss_pred EEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcC----CCCCCc----EEEECC-EECCcCCH---HHH-HHhcCCeEE
Confidence 44577889999999999999999999999999999 899999 999887 44322110 111 123457999
Q ss_pred cccCCC--CCCCccceeeEEeecCcccccCCcccccccCcCC---ccccCCccEEEeccCccCccchhhhhcCCCceeee
Q psy16304 265 VSQTPL--GRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLV 339 (537)
Q Consensus 265 v~Q~~~--l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs 339 (537)
+||++. +++.++. .+++...+....... ...+....+..+|+........+.+|||||+||+
T Consensus 406 v~Q~~~~~l~~~~tv------------~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv- 472 (623)
T PRK10261 406 IFQDPYASLDPRQTV------------GDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRI- 472 (623)
T ss_pred EecCchhhcCCCCCH------------HHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHH-
Confidence 999863 3333222 011111010000000 0112233455678753223556899999999999
Q ss_pred cccccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEE
Q psy16304 340 PTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYL 410 (537)
Q Consensus 340 ~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~ 410 (537)
++|++++. + |+++++| |++++.. ..++..+.++.+.++|++ +||.......+ +++|++|+++..
T Consensus 473 ---~iAraL~~-~--p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~i-sHdl~~v~~~~dri~vl~~G~iv~~ 545 (623)
T PRK10261 473 ---CIARALAL-N--PKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFI-SHDMAVVERISHRVAVMYLGQIVEI 545 (623)
T ss_pred ---HHHHHHhc-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhCCEEEEEECCEEEEe
Confidence 99999996 5 8999999 9999322 233344444445677777 89988876544 899999999988
Q ss_pred ecccch
Q psy16304 411 ISAKNL 416 (537)
Q Consensus 411 g~nkdl 416 (537)
|...++
T Consensus 546 g~~~~i 551 (623)
T PRK10261 546 GPRRAV 551 (623)
T ss_pred cCHHHH
Confidence 877766
No 187
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=2.1e-19 Score=174.03 Aligned_cols=186 Identities=16% Similarity=0.165 Sum_probs=121.6
Q ss_pred cccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCcccc---Ccee
Q psy16304 153 MGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLV---PTVG 229 (537)
Q Consensus 153 i~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~---Pt~G 229 (537)
.+++++.+.|+... .+ ..+-.++++.+.+|++++|+|+||||||||+++|+|. +. |++|
T Consensus 4 ~~~~~~~~~~~~~~--~~------------~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~----~~~~~~~~G 65 (202)
T cd03233 4 LSWRNISFTTGKGR--SK------------IPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANR----TEGNVSVEG 65 (202)
T ss_pred EEEEccEEEeccCC--CC------------ceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhccc----CCCCCCcce
Confidence 46788888876542 11 1123455677889999999999999999999999999 87 8999
Q ss_pred eeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccC
Q psy16304 230 FNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFR 309 (537)
Q Consensus 230 ~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~ 309 (537)
++.++| ..+... ....+..+++++|+..+++..+. .+.+......
T Consensus 66 ----~i~i~g-~~~~~~--------~~~~~~~i~~~~q~~~~~~~~tv----------------~~~l~~~~~~------ 110 (202)
T cd03233 66 ----DIHYNG-IPYKEF--------AEKYPGEIIYVSEEDVHFPTLTV----------------RETLDFALRC------ 110 (202)
T ss_pred ----EEEECC-EECccc--------hhhhcceEEEEecccccCCCCcH----------------HHHHhhhhhh------
Confidence 888887 433211 11123568898988664433221 1111110000
Q ss_pred CccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH--HHH---HHHHHhcCCEE
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTI---WKQYLGTVSQT 382 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l---~~~~~~~~~~v 382 (537)
. ....+..||+||+||+ +++++++. + |+++++| |+|++.. ..+ +..+.+..+.+
T Consensus 111 ~------------~~~~~~~LS~Ge~qrl----~laral~~-~--p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t 171 (202)
T cd03233 111 K------------GNEFVRGISGGERKRV----SIAEALVS-R--ASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTT 171 (202)
T ss_pred c------------cccchhhCCHHHHHHH----HHHHHHhh-C--CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCE
Confidence 0 1334778999999999 99999997 5 8999999 9998322 223 34443433445
Q ss_pred EEEEeCCCcchhhh-hh-hhhhcCCcEEEE
Q psy16304 383 LLVSHSLSGRPDDR-CQ-VYLMSCNCQVYL 410 (537)
Q Consensus 383 IlVvdshd~~~~~~-~~-i~ll~~G~ii~~ 410 (537)
++++++|+...... ++ ++++++|+++..
T Consensus 172 ~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~ 201 (202)
T cd03233 172 TFVSLYQASDEIYDLFDKVLVLYEGRQIYY 201 (202)
T ss_pred EEEEEcCCHHHHHHhCCeEEEEECCEEEec
Confidence 55554676555443 33 889999997653
No 188
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.78 E-value=2.5e-20 Score=205.54 Aligned_cols=220 Identities=14% Similarity=0.077 Sum_probs=138.2
Q ss_pred hhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccC----
Q psy16304 151 ILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVP---- 226 (537)
Q Consensus 151 ~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~P---- 226 (537)
.++.++++.+.|+... .. ..+-..++|.+.+|++++|+|+||||||||+++|+|. +.|
T Consensus 4 ~~l~~~~l~~~~~~~~--~~------------~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~----~~~~~~~ 65 (529)
T PRK15134 4 PLLAIENLSVAFRQQQ--TV------------RTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRL----LPSPPVV 65 (529)
T ss_pred ceEEEeceEEEecCCC--Cc------------eeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcC----CCCCcCC
Confidence 3567888888775310 00 0123345677889999999999999999999999999 765
Q ss_pred -ceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCC--CCCCccceeeEEeecCcccccCCcccccccCcC
Q psy16304 227 -TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL--GRPDSRTCQVYLIMCGVHQVSGIPDELTSATHL 303 (537)
Q Consensus 227 -t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~--l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l 303 (537)
++| +|.++| ..+..++. ..........+++++|++. +.+..+. . +++...+......
T Consensus 66 ~~~G----~i~~~g-~~i~~~~~---~~~~~~~~~~ig~v~Q~~~~~~~~~~~~-----~-------~~~~~~~~~~~~~ 125 (529)
T PRK15134 66 YPSG----DIRFHG-ESLLHASE---QTLRGVRGNKIAMIFQEPMVSLNPLHTL-----E-------KQLYEVLSLHRGM 125 (529)
T ss_pred ccce----EEEECC-EecccCCH---HHHHHHhcCceEEEecCchhhcCchhhH-----H-------HHHHHHHHHhcCC
Confidence 789 999887 54432221 1111112246899999864 2111110 0 0000000000001
Q ss_pred C---ccccCCccEEEeccCcc--CccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHHH-----H
Q psy16304 304 P---LVDFRSVPILVLGLDNA--GKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRT-----I 371 (537)
Q Consensus 304 ~---~~~~~~~~L~llGl~~~--gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~-----l 371 (537)
. ...+....+..+|+.+. ...+.+.+|||||+||+ ++|++++. + |++++|| |++++.... +
T Consensus 126 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv----~iAraL~~-~--p~llllDEPt~~LD~~~~~~l~~~ 198 (529)
T PRK15134 126 RREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRV----MIAMALLT-R--PELLIADEPTTALDVSVQAQILQL 198 (529)
T ss_pred CHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHH----HHHHHHhc-C--CCEEEEcCCCCccCHHHHHHHHHH
Confidence 0 11122334556777542 12445899999999999 99999996 5 8999999 999943322 2
Q ss_pred HHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccch
Q psy16304 372 WKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 372 ~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl 416 (537)
+.++.++.+.+++++ +|+.......+ ++++++|+++..+++.++
T Consensus 199 l~~l~~~~g~tvi~v-tHd~~~~~~~~dri~~l~~G~i~~~g~~~~~ 244 (529)
T PRK15134 199 LRELQQELNMGLLFI-THNLSIVRKLADRVAVMQNGRCVEQNRAATL 244 (529)
T ss_pred HHHHHHhcCCeEEEE-cCcHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 334333334567777 89988776543 899999999988887765
No 189
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.77 E-value=5.2e-20 Score=204.99 Aligned_cols=261 Identities=14% Similarity=0.057 Sum_probs=166.5
Q ss_pred hhhHHHHHhhhcccccccccccccccCccccccccCCCCCCc--hhHHHHHHHHHHHHhhhcccccCCCcccCCCCCCCC
Q psy16304 94 AEIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAPT--FEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDDP 171 (537)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~~~~ 171 (537)
....|+..+...+.+++....+++++.++++.+...+....+ .+. -....+.++++...|++.. ..
T Consensus 286 ~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~---------~~~~~i~~~~v~f~y~~~~--~~- 353 (576)
T TIGR02204 286 MVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHPKTLPV---------PLRGEIEFEQVNFAYPARP--DQ- 353 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCccCCc---------CCCceEEEEEEEEECCCCC--CC-
Confidence 456799999999999999999999998888754321111000 000 0012356677777664311 00
Q ss_pred CcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCC
Q psy16304 172 APTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGS 251 (537)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~ 251 (537)
..-+++++.+++|++++|+|+||+|||||+++|+|. +.|+.| ++.++| .++..++.
T Consensus 354 ------------~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl----~~p~~G----~I~i~g-~~i~~~~~--- 409 (576)
T TIGR02204 354 ------------PALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRF----YDPQSG----RILLDG-VDLRQLDP--- 409 (576)
T ss_pred ------------ccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhc----cCCCCC----EEEECC-EEHHhcCH---
Confidence 012346688899999999999999999999999999 999999 999987 65544332
Q ss_pred chhhHHHHhhhhccccCCCCCCC-ccceeeEEee-cCcccccCCcccccc------cCcCCccccCCccEEEeccCccCc
Q psy16304 252 EDFRTIWKQYLGTVSQTPLGRPD-SRTCQVYLIM-CGVHQVSGIPDELTS------ATHLPLVDFRSVPILVLGLDNAGK 323 (537)
Q Consensus 252 ~~~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~D-s~~~~~~~l~~~l~~------~~~l~~~~~~~~~L~llGl~~~gK 323 (537)
..+++.+++++|++.++.. ..+++.+.-+ .+.++ +.+.++. +..++... -..+|..
T Consensus 410 ----~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~---~~~~l~~~~l~~~i~~l~~gl-----~t~i~~~---- 473 (576)
T TIGR02204 410 ----AELRARMALVPQDPVLFAASVMENIRYGRPDATDEE---VEAAARAAHAHEFISALPEGY-----DTYLGER---- 473 (576)
T ss_pred ----HHHHHhceEEccCCccccccHHHHHhcCCCCCCHHH---HHHHHHHcCcHHHHHhCCCCC-----CceeCCC----
Confidence 2344789999999998865 3333322111 11111 1111111 11110000 0022221
Q ss_pred cchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH--HHHHHHHhc-CCEEEEEEeCCCcchhhhhh
Q psy16304 324 SSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR--TIWKQYLGT-VSQTLLVSHSLSGRPDDRCQ 398 (537)
Q Consensus 324 s~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~--~l~~~~~~~-~~~vIlVvdshd~~~~~~~~ 398 (537)
...|||||+||+ ++||+++. + |+++++| |++++... .+.+.+.+. .+.+++++ +|+......++
T Consensus 474 ---g~~LSgGq~Qrl----~laRal~~-~--~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~Iii-tH~~~~~~~~d 542 (576)
T TIGR02204 474 ---GVTLSGGQRQRI----AIARAILK-D--APILLLDEATSALDAESEQLVQQALETLMKGRTTLII-AHRLATVLKAD 542 (576)
T ss_pred ---CCcCCHHHHHHH----HHHHHHHh-C--CCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEE-ecchHHHHhCC
Confidence 235999999999 99999996 4 8999999 99994332 222333222 23566666 78777776665
Q ss_pred -hhhhcCCcEEEEecccchh
Q psy16304 399 -VYLMSCNCQVYLISAKNLS 417 (537)
Q Consensus 399 -i~ll~~G~ii~~g~nkdl~ 417 (537)
+..+++|+++..|+..++.
T Consensus 543 ~vi~l~~g~~~~~g~~~~l~ 562 (576)
T TIGR02204 543 RIVVMDQGRIVAQGTHAELI 562 (576)
T ss_pred EEEEEECCEEEeeecHHHHH
Confidence 8899999999998877663
No 190
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.77 E-value=6.2e-20 Score=223.29 Aligned_cols=266 Identities=12% Similarity=0.019 Sum_probs=172.9
Q ss_pred hhhHHHHHhhhcccccccccccccccCccccccccCC----CCCCchhHHHHHHHHHHHHhhhcccccCCCcccCCCCCC
Q psy16304 94 AEIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSD----DPAPTFEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSD 169 (537)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~p~~~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~~ 169 (537)
....|+..+...+++++....+++|+.++++.+.... .+.+|-.. -....+.+++++..|+...
T Consensus 1231 ~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~w---------p~~g~I~f~nVsf~Y~~~~--- 1298 (1522)
T TIGR00957 1231 QVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGW---------PPRGRVEFRNYCLRYREDL--- 1298 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCCCC---------CCCCcEEEEEEEEEeCCCC---
Confidence 3457888999999999999999999999886543221 11111000 0022456677777664321
Q ss_pred CCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecC
Q psy16304 170 DPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLG 249 (537)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~ 249 (537)
+ .+-+++++.+++|+++||||++|||||||++.|.|. ++|+.| +|.++| +++.-++.
T Consensus 1299 ~-------------~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl----~~~~~G----~I~IdG-~dI~~i~~- 1355 (1522)
T TIGR00957 1299 D-------------LVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRI----NESAEG----EIIIDG-LNIAKIGL- 1355 (1522)
T ss_pred c-------------ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcC----ccCCCC----eEEECC-EEccccCH-
Confidence 0 123456788899999999999999999999999999 999999 999997 77765554
Q ss_pred CCchhhHHHHhhhhccccCCCCCCC-ccceeeEEeecCcccccCCcccccccCcCCccccC-CccEEEeccCccCccchh
Q psy16304 250 GSEDFRTIWKQYLGTVSQTPLGRPD-SRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFR-SVPILVLGLDNAGKSSII 327 (537)
Q Consensus 250 G~~~~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~-~~~L~llGl~~~gKs~li 327 (537)
.. ++..+++++|++.+|.. ..+++-..-+.+.++ +.+.++..+-.+....- .-.=..+|.. -
T Consensus 1356 --~~----LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdee---i~~al~~a~l~~~I~~lp~GLdt~v~e~-------G 1419 (1522)
T TIGR00957 1356 --HD----LRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEE---VWWALELAHLKTFVSALPDKLDHECAEG-------G 1419 (1522)
T ss_pred --HH----HHhcCeEECCCCcccCccHHHHcCcccCCCHHH---HHHHHHHcCcHHHHhhCccCCCceecCC-------C
Confidence 33 44889999999998865 222221000011111 11111110000000000 0000022222 2
Q ss_pred hhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHHH--HHHHHHhc-CCEEEEEEeCCCcchhhhhh-hhh
Q psy16304 328 KRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRT--IWKQYLGT-VSQTLLVSHSLSGRPDDRCQ-VYL 401 (537)
Q Consensus 328 ~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~--l~~~~~~~-~~~vIlVvdshd~~~~~~~~-i~l 401 (537)
..|||||||++ ++||+++. + |++++|| |++++...+ +.+.+.+. .+.+++++ +|.......++ +++
T Consensus 1420 ~~LSgGQrQrl----~LARALLr-~--~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~I-AHRl~ti~~~DrIlV 1491 (1522)
T TIGR00957 1420 ENLSVGQRQLV----CLARALLR-K--TKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTI-AHRLNTIMDYTRVIV 1491 (1522)
T ss_pred CcCCHHHHHHH----HHHHHHHc-C--CCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEE-ecCHHHHHhCCEEEE
Confidence 34999999999 99999996 4 8999999 999954433 22333332 34577788 89998888777 999
Q ss_pred hcCCcEEEEecccchhh
Q psy16304 402 MSCNCQVYLISAKNLSN 418 (537)
Q Consensus 402 l~~G~ii~~g~nkdl~~ 418 (537)
|++|+++..|++.++.+
T Consensus 1492 ld~G~IvE~G~~~eLl~ 1508 (1522)
T TIGR00957 1492 LDKGEVAEFGAPSNLLQ 1508 (1522)
T ss_pred EECCEEEEECCHHHHHh
Confidence 99999999999998854
No 191
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=6.1e-20 Score=181.37 Aligned_cols=189 Identities=16% Similarity=0.114 Sum_probs=126.2
Q ss_pred ccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccC
Q psy16304 189 LSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQT 268 (537)
Q Consensus 189 ~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~ 268 (537)
+++.+.+|++++|+|+||||||||+++|+|. +.|++| ++.++| .++... ... ...+++++|+
T Consensus 18 is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl----~~~~~G----~i~~~g-~~~~~~-----~~~----~~~i~~~~q~ 79 (232)
T PRK10771 18 FDLTVERGERVAILGPSGAGKSTLLNLIAGF----LTPASG----SLTLNG-QDHTTT-----PPS----RRPVSMLFQE 79 (232)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCc----eEEECC-eecCcC-----Chh----hccEEEEecc
Confidence 4677889999999999999999999999999 999999 899887 433211 111 2468999999
Q ss_pred CCCCCCccc--eeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccccccc
Q psy16304 269 PLGRPDSRT--CQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNR 346 (537)
Q Consensus 269 ~~l~~~~~~--~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~ 346 (537)
+.+++..+. .+.+... .... ... ....+....+..+|+... ....+.+|||||+||+ ++++
T Consensus 80 ~~~~~~~tv~e~l~~~~~----------~~~~-~~~-~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrv----~lar 142 (232)
T PRK10771 80 NNLFSHLTVAQNIGLGLN----------PGLK-LNA-AQREKLHAIARQMGIEDL-LARLPGQLSGGQRQRV----ALAR 142 (232)
T ss_pred cccccCCcHHHHHhcccc----------cccC-CCH-HHHHHHHHHHHHcCcHHH-HhCCcccCCHHHHHHH----HHHH
Confidence 776543222 1100000 0000 000 001112233446677644 3555889999999999 9999
Q ss_pred ceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEecccch
Q psy16304 347 ARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 347 all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~nkdl 416 (537)
+++. + |+++++| |+|++.. ..++..+.++.+.+++++ +|+....... + ++++++|++...+...++
T Consensus 143 al~~-~--p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~-sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~ 217 (232)
T PRK10771 143 CLVR-E--QPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMV-SHSLEDAARIAPRSLVVADGRIAWDGPTDEL 217 (232)
T ss_pred HHhc-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE-ECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9996 5 8999999 9999332 233344444334567777 8998876553 3 899999999887766655
No 192
>PLN03130 ABC transporter C family member; Provisional
Probab=99.77 E-value=5.4e-20 Score=223.99 Aligned_cols=258 Identities=14% Similarity=0.057 Sum_probs=164.1
Q ss_pred HHHHHhhhcccccccccccccccCccccccccCCC----CCCchhHHHHHHHHHHHHhhhcccccCCCcccCCCCCCCCC
Q psy16304 97 WAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDD----PAPTFEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDDPA 172 (537)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~p~~~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~~~~~ 172 (537)
.++..+...+..++....+++|+.++++.+...+. ..||-.. -....+.++|++..|.... .
T Consensus 1187 ~~l~~l~~~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~w---------p~~g~I~f~nVsf~Y~~~~---~-- 1252 (1622)
T PLN03130 1187 SLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGW---------PSSGSIKFEDVVLRYRPEL---P-- 1252 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccCCCCCCCC---------CCCCcEEEEEEEEEeCCCC---C--
Confidence 34444455556667778888888888764432110 0011000 0012456677777664211 0
Q ss_pred cchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCc
Q psy16304 173 PTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSE 252 (537)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~ 252 (537)
.+-.++++++++|+++||||++|||||||+++|.|. +.|++| +|.++| +++.-++. .
T Consensus 1253 -----------~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl----~~p~~G----~I~IDG-~dI~~i~l---~ 1309 (1622)
T PLN03130 1253 -----------PVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRI----VELERG----RILIDG-CDISKFGL---M 1309 (1622)
T ss_pred -----------ceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCc----CCCCCc----eEEECC-EecccCCH---H
Confidence 123456788999999999999999999999999999 999999 999997 66655443 3
Q ss_pred hhhHHHHhhhhccccCCCCCCC-ccceeeEEeecCcccccCCcccccc------cCcCCccccCCccEEEeccCccCccc
Q psy16304 253 DFRTIWKQYLGTVSQTPLGRPD-SRTCQVYLIMCGVHQVSGIPDELTS------ATHLPLVDFRSVPILVLGLDNAGKSS 325 (537)
Q Consensus 253 ~~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~Ds~~~~~~~l~~~l~~------~~~l~~~~~~~~~L~llGl~~~gKs~ 325 (537)
.+ ++.+++|+|++.+|.. ..+++-..-+.+.+ ++.+.++. +..++.... ..+|..
T Consensus 1310 ~L----R~~IsiVpQdp~LF~GTIreNLd~~~~~tde---ei~~Al~~a~l~~~I~~lp~GLd-----t~Vge~------ 1371 (1622)
T PLN03130 1310 DL----RKVLGIIPQAPVLFSGTVRFNLDPFNEHNDA---DLWESLERAHLKDVIRRNSLGLD-----AEVSEA------ 1371 (1622)
T ss_pred HH----HhccEEECCCCccccccHHHHhCcCCCCCHH---HHHHHHHHcCcHHHHHhCccccC-----ccccCC------
Confidence 33 4889999999998865 22222111011111 11111111 111100000 012221
Q ss_pred hhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHHH--HHHHHHhc-CCEEEEEEeCCCcchhhhhh-h
Q psy16304 326 IIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRT--IWKQYLGT-VSQTLLVSHSLSGRPDDRCQ-V 399 (537)
Q Consensus 326 li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~--l~~~~~~~-~~~vIlVvdshd~~~~~~~~-i 399 (537)
-..||||||||+ ++||+++. + |++++|| |++++...+ +.+.+.+. .+.+++++ +|...+..+++ +
T Consensus 1372 -G~nLSgGQrQrl----aLARALLr-~--p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~I-AHRL~tI~~~DrI 1442 (1622)
T PLN03130 1372 -GENFSVGQRQLL----SLARALLR-R--SKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLII-AHRLNTIIDCDRI 1442 (1622)
T ss_pred -CCCCCHHHHHHH----HHHHHHHc-C--CCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEE-eCChHHHHhCCEE
Confidence 235999999999 99999996 5 8999999 999954433 22333332 34677788 89999888777 9
Q ss_pred hhhcCCcEEEEecccchhh
Q psy16304 400 YLMSCNCQVYLISAKNLSN 418 (537)
Q Consensus 400 ~ll~~G~ii~~g~nkdl~~ 418 (537)
++|++|+++..|++.+|.+
T Consensus 1443 lVLd~G~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130 1443 LVLDAGRVVEFDTPENLLS 1461 (1622)
T ss_pred EEEECCEEEEeCCHHHHHh
Confidence 9999999999999998854
No 193
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.77 E-value=6.4e-20 Score=178.87 Aligned_cols=185 Identities=14% Similarity=0.121 Sum_probs=122.8
Q ss_pred cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304 188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ 267 (537)
Q Consensus 188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q 267 (537)
++++.+.+|++++|+|+||||||||+++|+|. ..|++| +|.++| .++. + ... .+..+++++|
T Consensus 16 ~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~----~~~~~G----~i~~~g-~~~~--~---~~~----~~~~i~~v~q 77 (213)
T TIGR01277 16 EFDLNVADGEIVAIMGPSGAGKSTLLNLIAGF----IEPASG----SIKVND-QSHT--G---LAP----YQRPVSMLFQ 77 (213)
T ss_pred eeEEEEeCCcEEEEECCCCCCHHHHHHHHhcC----CCCCCc----EEEECC-EEcc--c---CCh----hccceEEEec
Confidence 35677889999999999999999999999999 999999 999887 4332 1 111 2256999999
Q ss_pred CCCCCCCccceeeEEeecCcccccCCccccc-ccC-cCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccc
Q psy16304 268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELT-SAT-HLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN 345 (537)
Q Consensus 268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~-~~~-~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la 345 (537)
++.++...+.. +++...+. ... ......+....+..+|+.... ...+..||+||+||+ +++
T Consensus 78 ~~~~~~~~t~~------------en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrl----~la 140 (213)
T TIGR01277 78 ENNLFAHLTVR------------QNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYL-DRLPEQLSGGQRQRV----ALA 140 (213)
T ss_pred cCccCCCCcHH------------HHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHh-hCCcccCCHHHHHHH----HHH
Confidence 98766543321 00100000 000 000011122334466775543 455889999999999 999
Q ss_pred cceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhh-hh-hhhhcCCcEEEEe
Q psy16304 346 RARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDR-CQ-VYLMSCNCQVYLI 411 (537)
Q Consensus 346 ~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~-~~-i~ll~~G~ii~~g 411 (537)
++++. + |+++++| |+|++.. ...+..+.++.+.+++++ +|+...... ++ ++++++|++...+
T Consensus 141 ral~~-~--p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~v-sh~~~~~~~~~d~v~~l~~g~i~~~~ 211 (213)
T TIGR01277 141 RCLVR-P--NPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMV-THHLSDARAIASQIAVVSQGKIKVVS 211 (213)
T ss_pred HHHhc-C--CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHhhcCeEEEEECCeEEEec
Confidence 99996 5 8999999 9999332 223344443334567777 888877654 33 8889999987654
No 194
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=3.9e-20 Score=185.05 Aligned_cols=210 Identities=14% Similarity=0.101 Sum_probs=132.2
Q ss_pred hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccC-----
Q psy16304 152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVP----- 226 (537)
Q Consensus 152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~P----- 226 (537)
++.++++.+.|+.... -.++++.+.+|++++|+|+||||||||+++|+|. +.|
T Consensus 4 ~l~~~~l~~~~~~~~~------------------l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~----~~~~~~~~ 61 (253)
T PRK14267 4 AIETVNLRVYYGSNHV------------------IKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRL----LELNEEAR 61 (253)
T ss_pred eEEEEeEEEEeCCeee------------------eecceEEEcCCCEEEEECCCCCCHHHHHHHHhcc----CCcccCCC
Confidence 5667888887654322 2345677889999999999999999999999999 776
Q ss_pred ceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcC--C
Q psy16304 227 TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHL--P 304 (537)
Q Consensus 227 t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l--~ 304 (537)
++| +|.++| .++...+. .. ..++..+++++|++.+++..+.. + ++..... .... .
T Consensus 62 ~~G----~i~~~g-~~i~~~~~----~~-~~~~~~i~~~~q~~~~~~~~tv~-----e-------nl~~~~~-~~~~~~~ 118 (253)
T PRK14267 62 VEG----EVRLFG-RNIYSPDV----DP-IEVRREVGMVFQYPNPFPHLTIY-----D-------NVAIGVK-LNGLVKS 118 (253)
T ss_pred Cce----EEEECC-EEcccccc----Ch-HHHhhceeEEecCCccCCCCcHH-----H-------HHHHHHH-hcCccCC
Confidence 499 899887 44321011 00 12336799999998765432220 0 0000000 0000 0
Q ss_pred ---ccccCCccEEEeccCc---cCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH-----HH
Q psy16304 305 ---LVDFRSVPILVLGLDN---AGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR-----TI 371 (537)
Q Consensus 305 ---~~~~~~~~L~llGl~~---~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~-----~l 371 (537)
........+..+|+.. ......+.+|||||+||+ +++++++. + |+++++| |+|++... ..
T Consensus 119 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv----~laral~~-~--p~llllDEP~~~LD~~~~~~l~~~ 191 (253)
T PRK14267 119 KKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRL----VIARALAM-K--PKILLMDEPTANIDPVGTAKIEEL 191 (253)
T ss_pred HHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHH----HHHHHHhc-C--CCEEEEcCCCccCCHHHHHHHHHH
Confidence 0001112222344321 112445789999999999 99999996 5 8999999 99983332 22
Q ss_pred HHHHHhcCCEEEEEEeCCCcchhhh-hh-hhhhcCCcEEEEecccch
Q psy16304 372 WKQYLGTVSQTLLVSHSLSGRPDDR-CQ-VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 372 ~~~~~~~~~~vIlVvdshd~~~~~~-~~-i~ll~~G~ii~~g~nkdl 416 (537)
+..+. . +.+++++ +|+...... ++ ++++++|+++..+.++++
T Consensus 192 l~~~~-~-~~tiii~-sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (253)
T PRK14267 192 LFELK-K-EYTIVLV-THSPAQAARVSDYVAFLYLGKLIEVGPTRKV 235 (253)
T ss_pred HHHHh-h-CCEEEEE-ECCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 33332 2 3566676 899887654 33 889999999988777665
No 195
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=4.4e-20 Score=184.02 Aligned_cols=193 Identities=13% Similarity=0.057 Sum_probs=122.5
Q ss_pred cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCcccc---CceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhc
Q psy16304 188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLV---PTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGT 264 (537)
Q Consensus 188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~---Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~ 264 (537)
++++.+.+|++++|+|+||||||||+++|+|. .. |+.| +|.++| .++...+ . ...+..+++
T Consensus 20 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~~~~~~~G----~i~~~g-~~i~~~~---~----~~~~~~i~~ 83 (246)
T PRK14269 20 DINMQIEQNKITALIGASGCGKSTFLRCFNRM----NDKIAKIDG----LVEIEG-KDVKNQD---V----VALRKNVGM 83 (246)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc----cCCCCCCce----EEEECC-EecccCC---H----HHHhhhEEE
Confidence 45677889999999999999999999999998 63 7899 899887 4442211 1 122367999
Q ss_pred cccCCCCCCCccceeeEEeecCcccccCCccc--c-cccCc-CCccccCCccEEEeccCc---cCccchhhhhcCCCcee
Q psy16304 265 VSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDE--L-TSATH-LPLVDFRSVPILVLGLDN---AGKSSIIKRILGEPIIS 337 (537)
Q Consensus 265 v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~--l-~~~~~-l~~~~~~~~~L~llGl~~---~gKs~li~~LSgG~rqr 337 (537)
++|++.++.. +. .+ ++... + ..... .....+....+..+|+.. ......+..||+||+||
T Consensus 84 ~~q~~~l~~~-tv-----~e-------ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 150 (246)
T PRK14269 84 VFQQPNVFVK-SI-----YE-------NISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQR 150 (246)
T ss_pred EecCCccccc-cH-----HH-------HhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHH
Confidence 9999876542 11 01 00000 0 00000 000001122233455531 01233467899999999
Q ss_pred eecccccccceeccCCceEEEEEe--cCchhhHH--HHHHHHHh-cCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEE
Q psy16304 338 LVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR--TIWKQYLG-TVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYL 410 (537)
Q Consensus 338 vs~ti~la~all~~~e~p~lllLD--T~Gl~~~~--~l~~~~~~-~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~ 410 (537)
+ +++++++. + |+++++| |+|++... .+.+.+.+ ..+.+++++ +|+....... + ++++++|+++..
T Consensus 151 v----~laral~~-~--p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~-tH~~~~~~~~~d~i~~l~~G~i~~~ 222 (246)
T PRK14269 151 L----CIARALAI-K--PKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMV-THNMQQGKRVADYTAFFHLGELIEF 222 (246)
T ss_pred H----HHHHHHhc-C--CCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEE-ecCHHHHHhhCcEEEEEECCEEEEE
Confidence 9 99999997 5 8999999 99983332 22232222 124566776 8898877643 3 889999999988
Q ss_pred ecccchh
Q psy16304 411 ISAKNLS 417 (537)
Q Consensus 411 g~nkdl~ 417 (537)
+++.++.
T Consensus 223 g~~~~~~ 229 (246)
T PRK14269 223 GESKEFF 229 (246)
T ss_pred CCHHHHH
Confidence 8877663
No 196
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=4.1e-20 Score=187.42 Aligned_cols=194 Identities=15% Similarity=0.122 Sum_probs=125.8
Q ss_pred ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304 187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS 266 (537)
Q Consensus 187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~ 266 (537)
.++++.+.+|++++|+|+||||||||+++|+|. ..|+.| +|.++| ..+.. .. .. ...+...+++++
T Consensus 19 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl----~~~~~G----~i~~~g-~~~~~-~~---~~-~~~~~~~i~~v~ 84 (275)
T PRK13639 19 KGINFKAEKGEMVALLGPNGAGKSTLFLHFNGI----LKPTSG----EVLIKG-EPIKY-DK---KS-LLEVRKTVGIVF 84 (275)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCcc----EEEECC-EECcc-cc---ch-HHHHHhheEEEe
Confidence 345677889999999999999999999999999 999999 999887 44321 00 11 112346799999
Q ss_pred cCCC-CCCCccceeeEEeecCcccccCCcccc-c-ccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccc
Q psy16304 267 QTPL-GRPDSRTCQVYLIMCGVHQVSGIPDEL-T-SATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG 343 (537)
Q Consensus 267 Q~~~-l~~~~~~~il~v~Ds~~~~~~~l~~~l-~-~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~ 343 (537)
|++. .+...+. .+ ++.... . ..............+..+|+.+.. +..+.+|||||+||+ +
T Consensus 85 q~~~~~~~~~tv-----~e-------~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-~~~~~~LS~Gq~qrv----~ 147 (275)
T PRK13639 85 QNPDDQLFAPTV-----EE-------DVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFE-NKPPHHLSGGQKKRV----A 147 (275)
T ss_pred eChhhhhccccH-----HH-------HHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhh-cCChhhCCHHHHHHH----H
Confidence 9863 1111111 11 000000 0 000000001122234456766544 455899999999999 9
Q ss_pred cccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhh-hh-hhhhcCCcEEEEeccc
Q psy16304 344 FNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDR-CQ-VYLMSCNCQVYLISAK 414 (537)
Q Consensus 344 la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~-~~-i~ll~~G~ii~~g~nk 414 (537)
++++++. + |+++++| |+|++.. ...+..+.+. +.+++++ +|+...... ++ ++++++|+++..+.+.
T Consensus 148 laral~~-~--p~llllDEPt~gLD~~~~~~l~~~l~~l~~~-~~til~v-tH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 222 (275)
T PRK13639 148 IAGILAM-K--PEIIVLDEPTSGLDPMGASQIMKLLYDLNKE-GITIIIS-THDVDLVPVYADKVYVMSDGKIIKEGTPK 222 (275)
T ss_pred HHHHHhc-C--CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEE-ecCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 9999996 5 8999999 9999333 2233343333 4566666 888887664 33 8999999999888777
Q ss_pred ch
Q psy16304 415 NL 416 (537)
Q Consensus 415 dl 416 (537)
++
T Consensus 223 ~~ 224 (275)
T PRK13639 223 EV 224 (275)
T ss_pred HH
Confidence 65
No 197
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.77 E-value=3.3e-20 Score=199.20 Aligned_cols=227 Identities=12% Similarity=0.069 Sum_probs=159.9
Q ss_pred hhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccC----
Q psy16304 151 ILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVP---- 226 (537)
Q Consensus 151 ~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~P---- 226 (537)
.++.++|+...|... ..+ +.+..++||.+.+||++||||.+||||||+.+.|.|. ..+
T Consensus 4 ~lL~V~nL~v~~~~~---~~~-----------~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gl----l~~~~~~ 65 (539)
T COG1123 4 PLLEVENLTVEFATD---GGR-----------VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGL----LPEGGRI 65 (539)
T ss_pred ceEEEeceEEEEecC---Ccc-----------eeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhcc----CCCCCcc
Confidence 467888999876654 110 3356778899999999999999999999999999998 554
Q ss_pred ceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcC---
Q psy16304 227 TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHL--- 303 (537)
Q Consensus 227 t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l--- 303 (537)
+.| +|.++| .++..++. ...+......++++||++.-..+-...+ ..++.+.+......
T Consensus 66 ~~G----~I~~~g-~dl~~l~~---~~~r~~rg~~Ia~i~Q~p~~slnP~~tI----------g~Qi~E~~~~h~~~~~~ 127 (539)
T COG1123 66 TSG----EVILDG-RDLLGLSE---REMRKLRGKRIAMIFQDPMTSLNPVMTI----------GDQIREALRLHGKGSRA 127 (539)
T ss_pred cce----EEEECC-cchhcCCH---HHHHHhccccEEEEecCchhhcCchhhH----------HHHHHHHHHHhccccHH
Confidence 478 999987 44433333 2345666788999999976221100000 01111111111111
Q ss_pred CccccCCccEEEeccCccCcc-chhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCch-----hhHHHHHHHH
Q psy16304 304 PLVDFRSVPILVLGLDNAGKS-SIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGS-----EDFRTIWKQY 375 (537)
Q Consensus 304 ~~~~~~~~~L~llGl~~~gKs-~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl-----~~~~~l~~~~ 375 (537)
+...++...+..+|+++.... .++++|||||+||+ .+|.+++. + |+++++| |.++ ..+..+++.+
T Consensus 128 ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv----~iAmALa~-~--P~LLIaDEPTTaLDvt~q~qIL~llk~l 200 (539)
T COG1123 128 EARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRV----MIAMALAL-K--PKLLIADEPTTALDVTTQAQILDLLKDL 200 (539)
T ss_pred HHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHH----HHHHHHhC-C--CCEEEECCCccccCHHHHHHHHHHHHHH
Confidence 112233455668898887653 68999999999999 99999986 4 8999999 8888 3444555677
Q ss_pred HhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchhhhhc
Q psy16304 376 LGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLSNGFK 421 (537)
Q Consensus 376 ~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~~~~~ 421 (537)
.++.+.+++++ +||+.-....+ +.+|++|+++..|...++.+...
T Consensus 201 ~~e~g~a~l~I-THDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~~~p~ 247 (539)
T COG1123 201 QRELGMAVLFI-THDLGVVAELADRVVVMYKGEIVETGPTEEILSNPQ 247 (539)
T ss_pred HHHcCcEEEEE-cCCHHHHHHhcCeEEEEECCEEEEecCHHHHHhccC
Confidence 77777788888 99998877655 99999999999999998755433
No 198
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.77 E-value=6.2e-20 Score=185.74 Aligned_cols=216 Identities=12% Similarity=0.050 Sum_probs=132.9
Q ss_pred HHhhhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCc
Q psy16304 148 MRGILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPT 227 (537)
Q Consensus 148 m~~~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt 227 (537)
|++.++.++++.+.|+.... +-.++++.+.+|++++|+|+||||||||+++|+|. +.|+
T Consensus 2 ~~~~~l~~~~l~~~~~~~~~-----------------il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl----~~p~ 60 (272)
T PRK15056 2 MQQAGIVVNDVTVTWRNGHT-----------------ALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGF----VRLA 60 (272)
T ss_pred chhceEEEEeEEEEecCCcE-----------------EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCC
Confidence 56667888999987752110 12345677889999999999999999999999999 9999
Q ss_pred eeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcC--Cc
Q psy16304 228 VGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHL--PL 305 (537)
Q Consensus 228 ~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l--~~ 305 (537)
+| ++.++| ..+. . ......+++++|++.+....... +.+.-. .. ........... ..
T Consensus 61 ~G----~i~~~g-~~i~-------~---~~~~~~i~~v~q~~~~~~~~~~~---~~~~i~--~~-~~~~~~~~~~~~~~~ 119 (272)
T PRK15056 61 SG----KISILG-QPTR-------Q---ALQKNLVAYVPQSEEVDWSFPVL---VEDVVM--MG-RYGHMGWLRRAKKRD 119 (272)
T ss_pred ce----EEEECC-EEhH-------H---hhccceEEEeccccccccCCCcc---hhhhee--cc-cccccccccCCCHHH
Confidence 99 888887 3321 0 11113589999986532110000 000000 00 00000000000 00
Q ss_pred cccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhc
Q psy16304 306 VDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGT 378 (537)
Q Consensus 306 ~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~ 378 (537)
.......+..+|+.... ...+.+|||||+||+ +++++++. + |+++++| |+|++.. ..++..+.+.
T Consensus 120 ~~~~~~~l~~~gl~~~~-~~~~~~LSgG~~qrv----~laraL~~-~--p~llllDEPt~~LD~~~~~~l~~~L~~~~~~ 191 (272)
T PRK15056 120 RQIVTAALARVDMVEFR-HRQIGELSGGQKKRV----FLARAIAQ-Q--GQVILLDEPFTGVDVKTEARIISLLRELRDE 191 (272)
T ss_pred HHHHHHHHHHcCChhHh-cCCcccCCHHHHHHH----HHHHHHhc-C--CCEEEEeCCCccCCHHHHHHHHHHHHHHHhC
Confidence 01112233456665443 445889999999999 99999996 5 8999999 9999332 2233344333
Q ss_pred CCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccch
Q psy16304 379 VSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 379 ~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl 416 (537)
+.+++++ +|+.......+ ++++ +|+++..+..+++
T Consensus 192 -g~tviiv-sH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~ 228 (272)
T PRK15056 192 -GKTMLVS-THNLGSVTEFCDYTVMV-KGTVLASGPTETT 228 (272)
T ss_pred -CCEEEEE-eCCHHHHHHhCCEEEEE-CCEEEeecCHHhc
Confidence 3466666 88887765544 5444 8998887776665
No 199
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.77 E-value=1.1e-19 Score=172.81 Aligned_cols=154 Identities=19% Similarity=0.190 Sum_probs=106.4
Q ss_pred ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304 187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS 266 (537)
Q Consensus 187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~ 266 (537)
.++++.+.+|++++|+|+||+|||||+++|+|. ..|+.| +|.++| .++..++. ..+...+++++
T Consensus 16 ~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~----~~~~~G----~v~~~g-~~~~~~~~-------~~~~~~i~~~~ 79 (180)
T cd03214 16 DDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGL----LKPSSG----EILLDG-KDLASLSP-------KELARKIAYVP 79 (180)
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCc----EEEECC-EECCcCCH-------HHHHHHHhHHH
Confidence 345677889999999999999999999999999 999999 888887 44322211 12235677766
Q ss_pred cCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccccccc
Q psy16304 267 QTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNR 346 (537)
Q Consensus 267 Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~ 346 (537)
| . +..+|+.... ...+..||+||+||+ ++++
T Consensus 80 q--~------------------------------------------l~~~gl~~~~-~~~~~~LS~G~~qrl----~lar 110 (180)
T cd03214 80 Q--A------------------------------------------LELLGLAHLA-DRPFNELSGGERQRV----LLAR 110 (180)
T ss_pred H--H------------------------------------------HHHcCCHhHh-cCCcccCCHHHHHHH----HHHH
Confidence 6 0 0011222111 123678999999999 9999
Q ss_pred ceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEE
Q psy16304 347 ARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVY 409 (537)
Q Consensus 347 all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~ 409 (537)
+++. + |+++++| |+|++.. ...+..+.++.+.+++++ +|+....... + ++++++|++..
T Consensus 111 al~~-~--p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~-sh~~~~~~~~~d~~~~l~~g~i~~ 178 (180)
T cd03214 111 ALAQ-E--PPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMV-LHDLNLAARYADRVILLKDGRIVA 178 (180)
T ss_pred HHhc-C--CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhCCEEEEEECCEEEe
Confidence 9996 5 8999999 9898322 223334433324566666 7888876543 3 88888888764
No 200
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.77 E-value=6.1e-20 Score=201.15 Aligned_cols=193 Identities=12% Similarity=0.025 Sum_probs=126.0
Q ss_pred cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccC--ceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcc
Q psy16304 188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVP--TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTV 265 (537)
Q Consensus 188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~P--t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v 265 (537)
++++.+.+|++++|+|+||||||||+++|+|. ..| ++| +|.++| ..+... ..+..++..++++
T Consensus 19 ~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~----~~~~~~~G----~i~~~g-~~~~~~------~~~~~~~~~i~~v 83 (500)
T TIGR02633 19 GIDLEVRPGECVGLCGENGAGKSTLMKILSGV----YPHGTWDG----EIYWSG-SPLKAS------NIRDTERAGIVII 83 (500)
T ss_pred ceEEEEeCCcEEEEECCCCCCHHHHHHHHhCC----CCCCCCCe----EEEECC-EECCCC------CHHHHHhCCEEEE
Confidence 45677889999999999999999999999999 775 799 888887 433211 1112233568999
Q ss_pred ccCCCCCCCccceeeEEeecCcccccCCccccccc--C-cCC---ccccCCccEEEeccCccCccchhhhhcCCCceeee
Q psy16304 266 SQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSA--T-HLP---LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLV 339 (537)
Q Consensus 266 ~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~--~-~l~---~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs 339 (537)
+|++.++...+.. + ++....... . .+. ...+....+..+|+........+.+|||||+||+
T Consensus 84 ~q~~~~~~~~tv~-----~-------~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv- 150 (500)
T TIGR02633 84 HQELTLVPELSVA-----E-------NIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLV- 150 (500)
T ss_pred eeccccCCCCcHH-----H-------HHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHH-
Confidence 9997655432220 0 000000000 0 000 0011223344667765433445899999999999
Q ss_pred cccccccceeccCCceEEEEEe--cCchhhHHH-----HHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEE
Q psy16304 340 PTVGFNRARVEYGNKYEVFLYD--LGGSEDFRT-----IWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYL 410 (537)
Q Consensus 340 ~ti~la~all~~~e~p~lllLD--T~Gl~~~~~-----l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~ 410 (537)
++|++++. + |+++++| |+|++.... .+..+. ..+.+++++ +||.......+ ++++++|+++..
T Consensus 151 ---~iA~al~~-~--p~lllLDEPt~~LD~~~~~~l~~~l~~l~-~~g~tviii-tHd~~~~~~~~d~i~~l~~G~i~~~ 222 (500)
T TIGR02633 151 ---EIAKALNK-Q--ARLLILDEPSSSLTEKETEILLDIIRDLK-AHGVACVYI-SHKLNEVKAVCDTICVIRDGQHVAT 222 (500)
T ss_pred ---HHHHHHhh-C--CCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEE-eCcHHHHHHhCCEEEEEeCCeEeee
Confidence 99999996 5 8999999 999943322 223333 234567777 89988877544 899999999887
Q ss_pred ecccch
Q psy16304 411 ISAKNL 416 (537)
Q Consensus 411 g~nkdl 416 (537)
+...+.
T Consensus 223 ~~~~~~ 228 (500)
T TIGR02633 223 KDMSTM 228 (500)
T ss_pred cCcccC
Confidence 766543
No 201
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.77 E-value=9e-20 Score=199.39 Aligned_cols=193 Identities=9% Similarity=0.018 Sum_probs=127.4
Q ss_pred ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304 187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS 266 (537)
Q Consensus 187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~ 266 (537)
.++++.+.+|++++|+|+||||||||+++|+|. ..|++| +|.++| ..+..++ ....++..+++++
T Consensus 15 ~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl----~~p~~G----~i~~~g-~~~~~~~------~~~~~~~~i~~v~ 79 (491)
T PRK10982 15 DNVNLKVRPHSIHALMGENGAGKSTLLKCLFGI----YQKDSG----SILFQG-KEIDFKS------SKEALENGISMVH 79 (491)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCC----CCCCce----EEEECC-EECCCCC------HHHHHhCCEEEEe
Confidence 345677889999999999999999999999999 899999 888887 4332111 1122346789999
Q ss_pred cCCCCCCCccceeeEEeecCcccccCCcccccccCcC--C---ccccCCccEEEeccCccCccchhhhhcCCCceeeecc
Q psy16304 267 QTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHL--P---LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPT 341 (537)
Q Consensus 267 Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l--~---~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~t 341 (537)
|++.++...+.. +++.......... . ...+....+..+|+.... ...+.+|||||+||+
T Consensus 80 q~~~~~~~~tv~------------~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgGq~qrv--- 143 (491)
T PRK10982 80 QELNLVLQRSVM------------DNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDP-RAKVATLSVSQMQMI--- 143 (491)
T ss_pred cccccccCCCHH------------HHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCc-cCchhhCCHHHHHHH---
Confidence 987654432221 0000000000000 0 001122334456766443 445899999999999
Q ss_pred cccccceeccCCceEEEEEe--cCchhhH--HHH---HHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEec
Q psy16304 342 VGFNRARVEYGNKYEVFLYD--LGGSEDF--RTI---WKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLIS 412 (537)
Q Consensus 342 i~la~all~~~e~p~lllLD--T~Gl~~~--~~l---~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~ 412 (537)
+++++++. + |++++|| |+|++.. ..+ +..+.+ .+.+++++ +|+.......+ ++++++|+++..+.
T Consensus 144 -~lA~al~~-~--p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvii~-tH~~~~~~~~~d~i~~l~~G~i~~~~~ 217 (491)
T PRK10982 144 -EIAKAFSY-N--AKIVIMDEPTSSLTEKEVNHLFTIIRKLKE-RGCGIVYI-SHKMEEIFQLCDEITILRDGQWIATQP 217 (491)
T ss_pred -HHHHHHHh-C--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEE-ecCHHHHHHhCCEEEEEECCEEEeecC
Confidence 99999996 5 8999999 9999433 222 233322 34566666 89988776543 89999999998887
Q ss_pred ccch
Q psy16304 413 AKNL 416 (537)
Q Consensus 413 nkdl 416 (537)
++++
T Consensus 218 ~~~~ 221 (491)
T PRK10982 218 LAGL 221 (491)
T ss_pred hhhC
Confidence 6654
No 202
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.77 E-value=4.1e-20 Score=207.44 Aligned_cols=224 Identities=13% Similarity=0.047 Sum_probs=141.4
Q ss_pred hhhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304 150 GILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG 229 (537)
Q Consensus 150 ~~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G 229 (537)
+.++.++++.+.|+... .. ..+...++|.+.+|+++||||+||||||||+++|+|. +.|+.|
T Consensus 10 ~~~l~v~~l~~~y~~~~--~~------------~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gl----l~p~~G 71 (623)
T PRK10261 10 RDVLAVENLNIAFMQEQ--QK------------IAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRL----LEQAGG 71 (623)
T ss_pred CceEEEeceEEEecCCC--Cc------------eeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcC----CCCCCe
Confidence 34678889998875321 00 1123456788889999999999999999999999999 999999
Q ss_pred eeeEEEEECCcEEEE-----EeecCCCc--hhhHHHHhhhhccccCC--CCCCCccceeeEEeecCcccccCCccccccc
Q psy16304 230 FNRARVEYGNKYEVF-----LYDLGGSE--DFRTIWKQYLGTVSQTP--LGRPDSRTCQVYLIMCGVHQVSGIPDELTSA 300 (537)
Q Consensus 230 ~t~~~i~i~g~~~i~-----~~D~~G~~--~~r~~~~~~i~~v~Q~~--~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~ 300 (537)
.|.++| ..+. ..+..... ..+......+++++|++ .+++..+. .+++...+...
T Consensus 72 ----~i~~~g-~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv------------~e~l~~~~~~~ 134 (623)
T PRK10261 72 ----LVQCDK-MLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTV------------GEQIAESIRLH 134 (623)
T ss_pred ----EEEECC-EEeccccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCH------------HHHHHHHHHHh
Confidence 888876 4331 01111111 11111224689999987 33332221 01111100000
Q ss_pred CcCC---ccccCCccEEEeccCcc--CccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhh-----H
Q psy16304 301 THLP---LVDFRSVPILVLGLDNA--GKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSED-----F 368 (537)
Q Consensus 301 ~~l~---~~~~~~~~L~llGl~~~--gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~-----~ 368 (537)
..+. ...+....+..+|+... .....+.+|||||+||+ ++|++++. + |+++++| |++++. +
T Consensus 135 ~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv----~iA~AL~~-~--P~lLllDEPt~~LD~~~~~~l 207 (623)
T PRK10261 135 QGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRV----MIAMALSC-R--PAVLIADEPTTALDVTIQAQI 207 (623)
T ss_pred cCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHH----HHHHHHhC-C--CCEEEEeCCCCccCHHHHHHH
Confidence 0110 01122334556787531 12455899999999999 99999996 5 8999999 999933 2
Q ss_pred HHHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccch
Q psy16304 369 RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 369 ~~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl 416 (537)
..+++.+.++.+.++|++ +||...+...+ +++|++|+++..+..+++
T Consensus 208 ~~ll~~l~~~~g~tvi~i-tHdl~~~~~~adri~vl~~G~i~~~g~~~~~ 256 (623)
T PRK10261 208 LQLIKVLQKEMSMGVIFI-THDMGVVAEIADRVLVMYQGEAVETGSVEQI 256 (623)
T ss_pred HHHHHHHHHhcCCEEEEE-cCCHHHHHHhCCEEEEeeCCeecccCCHHHh
Confidence 233345444435567777 89998876544 999999999887766655
No 203
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=4.2e-20 Score=185.52 Aligned_cols=214 Identities=14% Similarity=0.120 Sum_probs=134.7
Q ss_pred HHhhhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCcccc--
Q psy16304 148 MRGILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLV-- 225 (537)
Q Consensus 148 m~~~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~-- 225 (537)
|...++.++++.+.|+.... ..++++.+.+|++++|+|+||||||||+++|+|. ..
T Consensus 8 ~~~~~l~i~~l~~~~~~~~~------------------l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~----~~~~ 65 (259)
T PRK14274 8 MKQEVYQINGMNLWYGQHHA------------------LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLM----IQMV 65 (259)
T ss_pred cCCceEEEeeEEEEECCeee------------------EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh----ccCC
Confidence 45667888999987764222 2234577889999999999999999999999998 65
Q ss_pred C---ceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCc
Q psy16304 226 P---TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATH 302 (537)
Q Consensus 226 P---t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~ 302 (537)
| +.| ++.++| ..+..++. . ...++..+++++|++.++.. +. .+ ++.........
T Consensus 66 p~~~~~G----~i~~~g-~~~~~~~~----~-~~~~~~~i~~v~q~~~~~~~-tv-----~e-------nl~~~~~~~~~ 122 (259)
T PRK14274 66 PNVKLTG----EMNYNG-SNILKGKV----D-LVELRKNIGMVFQKGNPFPQ-SI-----FD-------NVAYGPRIHGT 122 (259)
T ss_pred CCCCCce----EEEECC-EEcccccc----C-HHHHhhceEEEecCCccccc-CH-----HH-------HHHhHHHhcCC
Confidence 3 689 999887 54432111 1 11233679999999775542 11 01 00000000000
Q ss_pred CC-c--cccCCccEEEeccCc---cCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH--HHH-
Q psy16304 303 LP-L--VDFRSVPILVLGLDN---AGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTI- 371 (537)
Q Consensus 303 l~-~--~~~~~~~L~llGl~~---~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l- 371 (537)
.. . ..+....+..+|+.. ......+.+|||||+||+ +++++++. + |+++++| |+|++.. ..+
T Consensus 123 ~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv----~laral~~-~--p~llllDEPt~~LD~~~~~~l~ 195 (259)
T PRK14274 123 KNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRL----CIARALAT-N--PDVLLMDEPTSALDPVSTRKIE 195 (259)
T ss_pred CCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHH----HHHHHHhc-C--CCEEEEcCCcccCCHHHHHHHH
Confidence 00 0 001111222334321 112344788999999999 99999996 5 8999999 9999332 222
Q ss_pred --HHHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEecccch
Q psy16304 372 --WKQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 372 --~~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~nkdl 416 (537)
+..+. + +.+++++ +|+.+..... + ++++++|+++..+.+.++
T Consensus 196 ~~l~~~~-~-~~tiiiv-tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 241 (259)
T PRK14274 196 ELILKLK-E-KYTIVIV-THNMQQAARVSDQTAFFYMGELVECNDTNKM 241 (259)
T ss_pred HHHHHHh-c-CCEEEEE-EcCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 23332 2 3566666 8888876543 3 889999999988887766
No 204
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.77 E-value=7.3e-20 Score=179.65 Aligned_cols=183 Identities=19% Similarity=0.201 Sum_probs=121.1
Q ss_pred cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304 188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ 267 (537)
Q Consensus 188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q 267 (537)
++++.+.+|++++|+|+||+|||||+++|+|. +.|+.| ++.++| ..+.. .. . +.+++++|
T Consensus 18 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~----~~~~~G----~i~~~~-~~~~~------~~-~----~~~~~~~q 77 (223)
T TIGR03740 18 NISLTVPKNSVYGLLGPNGAGKSTLLKMITGI----LRPTSG----EIIFDG-HPWTR------KD-L----HKIGSLIE 77 (223)
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC----CCCCce----EEEECC-Eeccc------cc-c----ccEEEEcC
Confidence 45677889999999999999999999999999 999999 888887 33311 01 1 35888999
Q ss_pred CCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccc
Q psy16304 268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA 347 (537)
Q Consensus 268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~a 347 (537)
++.++...+. .+ ++..... ..... ..+....+..+|+.... ...+.+||+||++|+ +++++
T Consensus 78 ~~~~~~~~t~-----~~-------~~~~~~~-~~~~~-~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~~rv----~lara 138 (223)
T TIGR03740 78 SPPLYENLTA-----RE-------NLKVHTT-LLGLP-DSRIDEVLNIVDLTNTG-KKKAKQFSLGMKQRL----GIAIA 138 (223)
T ss_pred CCCccccCCH-----HH-------HHHHHHH-HcCCC-HHHHHHHHHHcCCcHHH-hhhHhhCCHHHHHHH----HHHHH
Confidence 8765443222 00 0000000 00000 11122334456766543 445889999999999 99999
Q ss_pred eeccCCceEEEEEe--cCchhhH--HHHH---HHHHhcCCEEEEEEeCCCcchhhh-hh-hhhhcCCcEEEEeccc
Q psy16304 348 RVEYGNKYEVFLYD--LGGSEDF--RTIW---KQYLGTVSQTLLVSHSLSGRPDDR-CQ-VYLMSCNCQVYLISAK 414 (537)
Q Consensus 348 ll~~~e~p~lllLD--T~Gl~~~--~~l~---~~~~~~~~~vIlVvdshd~~~~~~-~~-i~ll~~G~ii~~g~nk 414 (537)
++. + |+++++| |+|++.. ..++ ..+.+ .+.+++++ +|+...... ++ ++++++|++...+.+.
T Consensus 139 l~~-~--p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~~tiii~-sH~~~~~~~~~d~i~~l~~g~i~~~~~~~ 209 (223)
T TIGR03740 139 LLN-H--PKLLILDEPTNGLDPIGIQELRELIRSFPE-QGITVILS-SHILSEVQQLADHIGIISEGVLGYQGKIN 209 (223)
T ss_pred Hhc-C--CCEEEECCCccCCCHHHHHHHHHHHHHHHH-CCCEEEEE-cCCHHHHHHhcCEEEEEeCCEEEEecChh
Confidence 996 5 8999999 9999332 2233 33322 23466666 888887754 33 8889999988776653
No 205
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.77 E-value=6.1e-20 Score=183.59 Aligned_cols=210 Identities=14% Similarity=0.094 Sum_probs=129.9
Q ss_pred hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCcccc-----C
Q psy16304 152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLV-----P 226 (537)
Q Consensus 152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~-----P 226 (537)
.+.++++.+.|++... -.++++.+.+|++++|+|+||||||||+++|+|. .. |
T Consensus 6 ~l~~~~l~~~~~~~~i------------------l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~~~~~~~ 63 (253)
T PRK14242 6 KMEARGLSFFYGDFQA------------------LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRM----NDLIPGAR 63 (253)
T ss_pred EEEEeeeEEEECCeee------------------ecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhh----cccCCCCC
Confidence 4567777777653221 2345677889999999999999999999999997 53 5
Q ss_pred ceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC--
Q psy16304 227 TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP-- 304 (537)
Q Consensus 227 t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~-- 304 (537)
+.| +|.++| .++...+ . . ...++..+++++|++.++.. +. .+ ++...+.......
T Consensus 64 ~~G----~i~~~g-~~i~~~~---~-~-~~~~~~~i~~v~q~~~~~~~-tv-----~e-------nl~~~~~~~~~~~~~ 120 (253)
T PRK14242 64 VEG----EILLDG-ENIYDPH---V-D-VVELRRRVGMVFQKPNPFPK-SI-----FE-------NVAYGLRVNGVKDKA 120 (253)
T ss_pred Cce----EEEECC-EEccccc---c-C-HHHHhhcEEEEecCCCCCcC-cH-----HH-------HHHHHHHHcCCCCHH
Confidence 899 899887 4432111 0 1 11234679999999775542 11 01 0000000000000
Q ss_pred -ccccCCccEEEeccCc---cCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHHH-----HHH
Q psy16304 305 -LVDFRSVPILVLGLDN---AGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRT-----IWK 373 (537)
Q Consensus 305 -~~~~~~~~L~llGl~~---~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~-----l~~ 373 (537)
...+....+..+|+.. ......+.+|||||+||+ +++++++. + |+++++| |+|++.... ++.
T Consensus 121 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv----~laral~~-~--p~llllDEPt~~LD~~~~~~l~~~l~ 193 (253)
T PRK14242 121 YLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRL----CIARALAV-E--PEVLLMDEPASALDPIATQKIEELIH 193 (253)
T ss_pred HHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHH----HHHHHHhc-C--CCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 0001111222344421 012334788999999999 99999996 5 8999999 999943322 223
Q ss_pred HHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEecccch
Q psy16304 374 QYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 374 ~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~nkdl 416 (537)
.+ +. +.+++++ +|+....... + ++++++|+++..+...++
T Consensus 194 ~~-~~-~~tvii~-tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14242 194 EL-KA-RYTIIIV-THNMQQAARVSDVTAFFYMGKLIEVGPTEQI 235 (253)
T ss_pred HH-hc-CCeEEEE-EecHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 33 22 3466666 8888877543 3 889999999888776655
No 206
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=7.1e-20 Score=183.86 Aligned_cols=217 Identities=15% Similarity=0.095 Sum_probs=136.5
Q ss_pred hhhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304 150 GILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG 229 (537)
Q Consensus 150 ~~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G 229 (537)
..++.++++.+.|+..... .++++.+.+|++++|+|+||||||||+++|+|. ..|++|
T Consensus 8 ~~~i~~~~~~~~~~~~~~l------------------~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~----~~~~~G 65 (257)
T PRK14246 8 EDVFNISRLYLYINDKAIL------------------KDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRL----IEIYDS 65 (257)
T ss_pred hhheeeeeEEEecCCceeE------------------eceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCcC
Confidence 4567888888877654333 234577889999999999999999999999999 999999
Q ss_pred eeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC---cc
Q psy16304 230 FNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LV 306 (537)
Q Consensus 230 ~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~ 306 (537)
++.++|.+.+...+..... ...++..+++++|++.+++..+. .+ ++........... ..
T Consensus 66 ----~v~~~G~~~~~g~~~~~~~--~~~~~~~i~~~~q~~~~~~~~tv-----~~-------nl~~~~~~~~~~~~~~~~ 127 (257)
T PRK14246 66 ----KIKVDGKVLYFGKDIFQID--AIKLRKEVGMVFQQPNPFPHLSI-----YD-------NIAYPLKSHGIKEKREIK 127 (257)
T ss_pred ----ceeEcCEEEECCcccccCC--HHHHhcceEEEccCCccCCCCcH-----HH-------HHHHHHHhcCCCCHHHHH
Confidence 7777763333222221111 11234678999999876543222 00 0000000000000 00
Q ss_pred ccCCccEEEeccCc---cCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH-----HHHHHHH
Q psy16304 307 DFRSVPILVLGLDN---AGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR-----TIWKQYL 376 (537)
Q Consensus 307 ~~~~~~L~llGl~~---~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~-----~l~~~~~ 376 (537)
......+..+|+.. ......+..||+||+||+ +++++++. + |+++++| |+|++... ..+..+.
T Consensus 128 ~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl----~laral~~-~--P~llllDEPt~~LD~~~~~~l~~~l~~~~ 200 (257)
T PRK14246 128 KIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRL----TIARALAL-K--PKVLLMDEPTSMIDIVNSQAIEKLITELK 200 (257)
T ss_pred HHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHH----HHHHHHHc-C--CCEEEEcCCCccCCHHHHHHHHHHHHHHh
Confidence 01111222344421 112345788999999999 99999996 5 8999999 99983332 2223332
Q ss_pred hcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEecccch
Q psy16304 377 GTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 377 ~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~nkdl 416 (537)
+ ..+++++ +|+....... + ++++++|++...++..++
T Consensus 201 -~-~~tiilv-sh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~ 239 (257)
T PRK14246 201 -N-EIAIVIV-SHNPQQVARVADYVAFLYNGELVEWGSSNEI 239 (257)
T ss_pred -c-CcEEEEE-ECCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 2 3567777 8998887543 3 899999999988877665
No 207
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=7.1e-20 Score=186.03 Aligned_cols=196 Identities=14% Similarity=0.125 Sum_probs=123.6
Q ss_pred ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304 187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS 266 (537)
Q Consensus 187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~ 266 (537)
.++++.+.+|++++|+|+||||||||+++|+|. +.|++| +|.++| ..+....... . ...++..+++++
T Consensus 24 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl----~~p~~G----~i~~~g-~~i~~~~~~~--~-~~~~~~~i~~~~ 91 (280)
T PRK13649 24 FDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGL----HVPTQG----SVRVDD-TLITSTSKNK--D-IKQIRKKVGLVF 91 (280)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC----CCCCce----EEEECC-EEcccccccc--C-HHHHHhheEEEe
Confidence 345677889999999999999999999999999 999999 999887 4442211000 0 112336789999
Q ss_pred cCCC--CCCCccceeeEEeecCcccccCCcccccc--cCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccc
Q psy16304 267 QTPL--GRPDSRTCQVYLIMCGVHQVSGIPDELTS--ATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTV 342 (537)
Q Consensus 267 Q~~~--l~~~~~~~il~v~Ds~~~~~~~l~~~l~~--~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti 342 (537)
|++. ++. .+. .+ ++...... .............+..+|+........+.+|||||+||+
T Consensus 92 q~~~~~~~~-~tv-----~e-------~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv---- 154 (280)
T PRK13649 92 QFPESQLFE-ETV-----LK-------DVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRV---- 154 (280)
T ss_pred eChhhhhcc-ccH-----HH-------HHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHH----
Confidence 9862 221 111 01 00000000 000000001122233456653222445889999999999
Q ss_pred ccccceeccCCceEEEEEe--cCchhhH--HHH---HHHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEecc
Q psy16304 343 GFNRARVEYGNKYEVFLYD--LGGSEDF--RTI---WKQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLISA 413 (537)
Q Consensus 343 ~la~all~~~e~p~lllLD--T~Gl~~~--~~l---~~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~n 413 (537)
+++++++. + |++++|| |+|++.. ..+ +..+.+. +.+++++ +|+....... + ++++++|+++..+..
T Consensus 155 ~la~al~~-~--p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiiiv-sH~~~~~~~~~d~i~~l~~G~i~~~g~~ 229 (280)
T PRK13649 155 AIAGILAM-E--PKILVLDEPTAGLDPKGRKELMTLFKKLHQS-GMTIVLV-THLMDDVANYADFVYVLEKGKLVLSGKP 229 (280)
T ss_pred HHHHHHHc-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEE-eccHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999996 5 8999999 9999333 222 2333332 4566666 8888877553 3 889999999888776
Q ss_pred cch
Q psy16304 414 KNL 416 (537)
Q Consensus 414 kdl 416 (537)
.++
T Consensus 230 ~~~ 232 (280)
T PRK13649 230 KDI 232 (280)
T ss_pred HHH
Confidence 655
No 208
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.76 E-value=7.2e-20 Score=179.14 Aligned_cols=181 Identities=16% Similarity=0.124 Sum_probs=111.4
Q ss_pred cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304 188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ 267 (537)
Q Consensus 188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q 267 (537)
++++.+.+|++++|+|+||||||||+++|+|. ..|+.| ++.++| ..+...+ . ...+..+++++|
T Consensus 22 ~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~----~~~~~G----~i~~~g-~~~~~~~---~----~~~~~~i~~~~q 85 (220)
T cd03245 22 NVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGL----YKPTSG----SVLLDG-TDIRQLD---P----ADLRRNIGYVPQ 85 (220)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC----cCCCCC----eEEECC-EEhHHCC---H----HHHHhhEEEeCC
Confidence 45677889999999999999999999999999 899999 888887 3332111 0 112357899999
Q ss_pred CCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCc----------cchhhhhcCCCcee
Q psy16304 268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGK----------SSIIKRILGEPIIS 337 (537)
Q Consensus 268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gK----------s~li~~LSgG~rqr 337 (537)
++.++.. +. .+ .+...............+..+|+.+..+ ...+.+|||||+||
T Consensus 86 ~~~~~~~-tv-----~e-----------~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qr 148 (220)
T cd03245 86 DVTLFYG-TL-----RD-----------NITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQA 148 (220)
T ss_pred CCccccc-hH-----HH-----------HhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHH
Confidence 9875431 11 01 0000000000000001111222221110 12256899999999
Q ss_pred eecccccccceeccCCceEEEEEe--cCchhhH--HHHHHHHHhc-CCEEEEEEeCCCcchhhhhh-hhhhcCCcEEE
Q psy16304 338 LVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIWKQYLGT-VSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQVY 409 (537)
Q Consensus 338 vs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l~~~~~~~-~~~vIlVvdshd~~~~~~~~-i~ll~~G~ii~ 409 (537)
+ .++++++. + |+++++| |+|++.. ..+++.+.+. .+.+++++ +|+.+..+.++ ++++++|+++.
T Consensus 149 l----~la~al~~-~--p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~-sH~~~~~~~~d~v~~l~~g~i~~ 218 (220)
T cd03245 149 V----ALARALLN-D--PPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIII-THRPSLLDLVDRIIVMDSGRIVA 218 (220)
T ss_pred H----HHHHHHhc-C--CCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEE-eCCHHHHHhCCEEEEEeCCeEee
Confidence 9 99999996 5 8999999 9999433 2233322221 12566666 78877665444 88888998764
No 209
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.76 E-value=1.3e-19 Score=197.97 Aligned_cols=211 Identities=9% Similarity=-0.037 Sum_probs=134.0
Q ss_pred hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304 152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN 231 (537)
Q Consensus 152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t 231 (537)
++.++++.+.|+...+. .++++.+.+|++++|+|+||||||||+++|+|. ..|++|
T Consensus 3 ~l~~~~l~~~~~~~~il------------------~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~----~~p~~G-- 58 (490)
T PRK10938 3 SLQISQGTFRLSDTKTL------------------QLPSLTLNAGDSWAFVGANGSGKSALARALAGE----LPLLSG-- 58 (490)
T ss_pred eEEEEeEEEEcCCeeec------------------ccceEEEcCCCEEEEECCCCCCHHHHHHHHhcc----CCCCCc--
Confidence 46788888887643322 234577889999999999999999999999999 899999
Q ss_pred eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCc
Q psy16304 232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSV 311 (537)
Q Consensus 232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~ 311 (537)
++.++| ..+..++ . ......+++++|++.... .... ..... ..+.+.+.. ......+...
T Consensus 59 --~i~~~~-~~~~~~~------~-~~~~~~i~~~~q~~~~~~-~~~~-~~~~~------~~~~~~~~~--~~~~~~~~~~ 118 (490)
T PRK10938 59 --ERQSQF-SHITRLS------F-EQLQKLVSDEWQRNNTDM-LSPG-EDDTG------RTTAEIIQD--EVKDPARCEQ 118 (490)
T ss_pred --eEEECC-cccccCC------H-HHHHHHhceeccCcchhh-cccc-hhhcc------ccHHHhccc--chhHHHHHHH
Confidence 887765 2221111 1 112356899999764210 0000 00000 001111100 0001112233
Q ss_pred cEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHHH-----HHHHHHhcCCEEEE
Q psy16304 312 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRT-----IWKQYLGTVSQTLL 384 (537)
Q Consensus 312 ~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~-----l~~~~~~~~~~vIl 384 (537)
.+..+|+.... ...+.+|||||+||+ +++++++. + |++++|| |+|++.... ++..+.++ +.+++
T Consensus 119 ~l~~~~l~~~~-~~~~~~LSgG~~qrv----~la~al~~-~--p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-g~tvi 189 (490)
T PRK10938 119 LAQQFGITALL-DRRFKYLSTGETRKT----LLCQALMS-E--PDLLILDEPFDGLDVASRQQLAELLASLHQS-GITLV 189 (490)
T ss_pred HHHHcCCHhhh-hCCcccCCHHHHHHH----HHHHHHHc-C--CCEEEEcCCcccCCHHHHHHHHHHHHHHHhc-CCeEE
Confidence 44567776543 455899999999999 99999996 5 8999999 999933322 33344333 45666
Q ss_pred EEeCCCcchhhhhh--hhhhcCCcEEEEecccch
Q psy16304 385 VSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 385 Vvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl 416 (537)
++ +|+.......+ ++++++|+++..+...++
T Consensus 190 i~-tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 222 (490)
T PRK10938 190 LV-LNRFDEIPDFVQFAGVLADCTLAETGEREEI 222 (490)
T ss_pred EE-eCCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 66 89988776544 899999999887765544
No 210
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=6.9e-20 Score=181.05 Aligned_cols=191 Identities=16% Similarity=0.130 Sum_probs=125.6
Q ss_pred ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304 187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS 266 (537)
Q Consensus 187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~ 266 (537)
.++++.+.+|++++|+|+||+|||||+++|+|. +.|+.| ++.++| .++... ... +..+++++
T Consensus 17 ~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~----~~~~~G----~i~~~g-~~~~~~-----~~~----~~~i~~~~ 78 (232)
T cd03300 17 DGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGF----ETPTSG----EILLDG-KDITNL-----PPH----KRPVNTVF 78 (232)
T ss_pred ccceEEECCCCEEEEECCCCCCHHHHHHHHhcC----CCCCce----EEEECC-EEcCcC-----Chh----hcceEEEe
Confidence 345677889999999999999999999999999 999999 888887 433211 111 25689999
Q ss_pred cCCCCCCCccceeeEEeecCcccccCCcccccc--cCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccccc
Q psy16304 267 QTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTS--ATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF 344 (537)
Q Consensus 267 Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~--~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~l 344 (537)
|++.++...+. .+ ++...... .............+..+|+.... ...+..||+||+||+ ++
T Consensus 79 q~~~~~~~~t~-----~~-------nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~lS~G~~qrl----~l 141 (232)
T cd03300 79 QNYALFPHLTV-----FE-------NIAFGLRLKKLPKAEIKERVAEALDLVQLEGYA-NRKPSQLSGGQQQRV----AI 141 (232)
T ss_pred cccccCCCCcH-----HH-------HHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhh-cCChhhCCHHHHHHH----HH
Confidence 98775543222 00 00000000 00000011122334456776443 455899999999999 99
Q ss_pred ccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEecccc
Q psy16304 345 NRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLISAKN 415 (537)
Q Consensus 345 a~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~nkd 415 (537)
+++++. + |+++++| |+|++.. ...+..+.++...+++++ +|+..+.... + ++++++|++...+++.+
T Consensus 142 aral~~-~--p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~-sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~ 217 (232)
T cd03300 142 ARALVN-E--PKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFV-THDQEEALTMSDRIAVMNKGKIQQIGTPEE 217 (232)
T ss_pred HHHHhc-C--CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEE-eCCHHHHHHhcCEEEEEECCEEEecCCHHH
Confidence 999996 5 8999999 9999322 223344433334567777 8888876543 3 88999999988776555
Q ss_pred h
Q psy16304 416 L 416 (537)
Q Consensus 416 l 416 (537)
+
T Consensus 218 ~ 218 (232)
T cd03300 218 I 218 (232)
T ss_pred H
Confidence 4
No 211
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=1.2e-19 Score=179.31 Aligned_cols=196 Identities=16% Similarity=0.111 Sum_probs=119.0
Q ss_pred ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304 187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS 266 (537)
Q Consensus 187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~ 266 (537)
.++++.+.+|++++|+|+||||||||+++|+|. ..|+.| ++.++| ..+..++ ....++.+++++
T Consensus 19 ~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~p~~G----~i~~~g-~~~~~~~-------~~~~~~~i~~~~ 82 (234)
T cd03251 19 RDISLDIPAGETVALVGPSGSGKSTLVNLIPRF----YDVDSG----RILIDG-HDVRDYT-------LASLRRQIGLVS 82 (234)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcc----ccCCCC----EEEECC-EEhhhCC-------HHHHHhhEEEeC
Confidence 345677889999999999999999999999999 999999 898887 4332111 112346789999
Q ss_pred cCCCCCCCccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEEe--ccCccCccchhhhhcCCCceeeecccc
Q psy16304 267 QTPLGRPDSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVL--GLDNAGKSSIIKRILGEPIISLVPTVG 343 (537)
Q Consensus 267 Q~~~l~~~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~ll--Gl~~~gKs~li~~LSgG~rqrvs~ti~ 343 (537)
|++.++.. +. .| -...........+... .. .......+..+ |+.... ...+..||+||+||+ +
T Consensus 83 q~~~~~~~-tv-----~enl~~~~~~~~~~~~~~~--~~-~~~~~~~~~~l~~~l~~~~-~~~~~~LS~G~~qrv----~ 148 (234)
T cd03251 83 QDVFLFND-TV-----AENIAYGRPGATREEVEEA--AR-AANAHEFIMELPEGYDTVI-GERGVKLSGGQRQRI----A 148 (234)
T ss_pred CCCeeccc-cH-----HHHhhccCCCCCHHHHHHH--HH-HcCcHHHHHhcccCcceee-ccCCCcCCHHHHHHH----H
Confidence 99765432 11 11 0000000000000000 00 00000111111 332222 233778999999999 9
Q ss_pred cccceeccCCceEEEEEe--cCchhhH--HHHHHHHHhc-CCEEEEEEeCCCcchhhhhh-hhhhcCCcEEEEecccch
Q psy16304 344 FNRARVEYGNKYEVFLYD--LGGSEDF--RTIWKQYLGT-VSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 344 la~all~~~e~p~lllLD--T~Gl~~~--~~l~~~~~~~-~~~vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g~nkdl 416 (537)
++++++. + |+++++| |+|++.. ..+++.+.+. .+.+++++ +|+......++ ++++++|+++..+..+++
T Consensus 149 la~al~~-~--p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~-sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 223 (234)
T cd03251 149 IARALLK-D--PPILILDEATSALDTESERLVQAALERLMKNRTTFVI-AHRLSTIENADRIVVLEDGKIVERGTHEEL 223 (234)
T ss_pred HHHHHhc-C--CCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEE-ecCHHHHhhCCEEEEecCCeEeeeCCHHHH
Confidence 9999996 5 8999999 9999322 2222322211 13456666 78887776655 899999999877665554
No 212
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=7.8e-20 Score=183.01 Aligned_cols=210 Identities=15% Similarity=0.111 Sum_probs=130.6
Q ss_pred hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccC-----
Q psy16304 152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVP----- 226 (537)
Q Consensus 152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~P----- 226 (537)
++.++++.+.|+...+ -.++++.+.+|++++|+|+||||||||+++|+|. +.|
T Consensus 7 ~l~~~~l~~~~~~~~i------------------l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~~~~~~~ 64 (254)
T PRK14273 7 IIETENLNLFYTDFKA------------------LNNINIKILKNSITALIGPSGCGKSTFLRTLNRM----NDLVEGIK 64 (254)
T ss_pred eEEEeeeEEEeCCcee------------------ecceeeEEcCCCEEEEECCCCCCHHHHHHHHhcc----ccCCcCCC
Confidence 4667888887653222 2335677889999999999999999999999999 776
Q ss_pred ceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC--
Q psy16304 227 TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP-- 304 (537)
Q Consensus 227 t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~-- 304 (537)
+.| +|.++| ..+...+ .. ...++..+++++|++.++. .+. .+ ++...........
T Consensus 65 ~~G----~i~~~g-~~i~~~~----~~-~~~~~~~i~~v~q~~~~~~-~tv-----~e-------ni~~~~~~~~~~~~~ 121 (254)
T PRK14273 65 IEG----NVIYEG-KNIYSNN----FD-ILELRRKIGMVFQTPNPFL-MSI-----YD-------NISYGPKIHGTKDKK 121 (254)
T ss_pred Cce----EEEECC-Eeccccc----cc-HHHHhhceEEEeecccccc-CcH-----HH-------HHHHHHHhcCCCCHH
Confidence 589 898887 4332111 01 1223467999999976542 111 11 0000000000000
Q ss_pred -ccccCCccEEEeccCc---cCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-----HHHHH
Q psy16304 305 -LVDFRSVPILVLGLDN---AGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWK 373 (537)
Q Consensus 305 -~~~~~~~~L~llGl~~---~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~ 373 (537)
........+..+|+.. ......+..|||||+||+ +++++++. + |+++++| |+|++.. ...+.
T Consensus 122 ~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv----~laral~~-~--p~lllLDEPt~~LD~~~~~~l~~~l~ 194 (254)
T PRK14273 122 KLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRL----CIARTLAI-E--PNVILMDEPTSALDPISTGKIEELII 194 (254)
T ss_pred HHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHH----HHHHHHHc-C--CCEEEEeCCCcccCHHHHHHHHHHHH
Confidence 0001111122233310 112344789999999999 99999996 5 8999999 9999332 22334
Q ss_pred HHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEecccch
Q psy16304 374 QYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 374 ~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~nkdl 416 (537)
.+. . +.+++++ +|+....... + ++++++|+++..+.++++
T Consensus 195 ~~~-~-~~tvii~-sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 236 (254)
T PRK14273 195 NLK-E-SYTIIIV-THNMQQAGRISDRTAFFLNGCIEEESSTDEL 236 (254)
T ss_pred HHh-c-CCEEEEE-eCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 442 2 3566666 8888876543 3 889999999988877766
No 213
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.76 E-value=9.5e-20 Score=182.52 Aligned_cols=192 Identities=17% Similarity=0.091 Sum_probs=122.6
Q ss_pred cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccC----ceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhh
Q psy16304 188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVP----TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLG 263 (537)
Q Consensus 188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~P----t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~ 263 (537)
++++.+.+|++++|+|+||||||||+++|+|. ..| +.| +|.++| .++.. . ......++
T Consensus 21 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl----~~~~~~~~~G----~i~~~g-~~i~~------~---~~~~~~i~ 82 (254)
T PRK10418 21 GVSLTLQRGRVLALVGGSGSGKSLTCAAALGI----LPAGVRQTAG----RVLLDG-KPVAP------C---ALRGRKIA 82 (254)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCCCcCC----EEEECC-eeccc------c---ccccceEE
Confidence 45677889999999999999999999999999 888 999 899887 44421 1 11225689
Q ss_pred ccccCCC-CCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccC--ccchhhhhcCCCceeeec
Q psy16304 264 TVSQTPL-GRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAG--KSSIIKRILGEPIISLVP 340 (537)
Q Consensus 264 ~v~Q~~~-l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~g--Ks~li~~LSgG~rqrvs~ 340 (537)
+++|++. .+..... +.+ .+...+...............+..+|+.... ....+.+|||||+||+
T Consensus 83 ~v~q~~~~~~~~~~~----~~~-------~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv-- 149 (254)
T PRK10418 83 TIMQNPRSAFNPLHT----MHT-------HARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRM-- 149 (254)
T ss_pred EEecCCccccCcccc----HHH-------HHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHH--
Confidence 9999864 1211100 000 0000000000000001112233355655421 2344789999999999
Q ss_pred ccccccceeccCCceEEEEEe--cCchhhH--H---HHHHHHHhcCCEEEEEEeCCCcchhhh-hh-hhhhcCCcEEEEe
Q psy16304 341 TVGFNRARVEYGNKYEVFLYD--LGGSEDF--R---TIWKQYLGTVSQTLLVSHSLSGRPDDR-CQ-VYLMSCNCQVYLI 411 (537)
Q Consensus 341 ti~la~all~~~e~p~lllLD--T~Gl~~~--~---~l~~~~~~~~~~vIlVvdshd~~~~~~-~~-i~ll~~G~ii~~g 411 (537)
+++++++. + |++++|| |+|++.. . ..++.+.++.+.+++++ +|+...... ++ ++++++|+++..+
T Consensus 150 --~laral~~-~--p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~-sH~~~~~~~~~d~v~~l~~G~i~~~~ 223 (254)
T PRK10418 150 --MIALALLC-E--APFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLV-THDMGVVARLADDVAVMSHGRIVEQG 223 (254)
T ss_pred --HHHHHHhc-C--CCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEE-ecCHHHHHHhCCEEEEEECCEEEEec
Confidence 99999996 5 8999999 9999433 2 23344434334567777 888887754 33 8999999998877
Q ss_pred cccch
Q psy16304 412 SAKNL 416 (537)
Q Consensus 412 ~nkdl 416 (537)
...++
T Consensus 224 ~~~~~ 228 (254)
T PRK10418 224 DVETL 228 (254)
T ss_pred CHHHH
Confidence 76665
No 214
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=3e-19 Score=196.03 Aligned_cols=201 Identities=13% Similarity=0.052 Sum_probs=128.2
Q ss_pred ccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCcccc-CceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhh
Q psy16304 185 LPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLV-PTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLG 263 (537)
Q Consensus 185 ~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~-Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~ 263 (537)
+-.+++|.+.+|++++|+|+||||||||+++|+|. .. |++| +|.++| .++.. ... ....+..++
T Consensus 277 vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl----~~~~~~G----~i~~~g-~~~~~-----~~~-~~~~~~~i~ 341 (506)
T PRK13549 277 RVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGA----YPGRWEG----EIFIDG-KPVKI-----RNP-QQAIAQGIA 341 (506)
T ss_pred cccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCC----CCCCCCc----EEEECC-EECCC-----CCH-HHHHHCCCE
Confidence 34567888999999999999999999999999999 88 5999 898887 43321 111 112235689
Q ss_pred ccccCCC---CCCCccc--eeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceee
Q psy16304 264 TVSQTPL---GRPDSRT--CQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISL 338 (537)
Q Consensus 264 ~v~Q~~~---l~~~~~~--~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrv 338 (537)
+++|++. ++...+. .+.+.. ...... ......-.........+..+|+........+.+|||||+||+
T Consensus 342 ~v~q~~~~~~~~~~~tv~e~l~~~~------~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv 414 (506)
T PRK13549 342 MVPEDRKRDGIVPVMGVGKNITLAA------LDRFTG-GSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKA 414 (506)
T ss_pred EeCcchhhCCCcCCCCHHHHhhhhh------hhhhcc-CcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHH
Confidence 9999852 3322221 000000 000000 000000000012233455677753223555899999999999
Q ss_pred ecccccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEE
Q psy16304 339 VPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVY 409 (537)
Q Consensus 339 s~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~ 409 (537)
+++++++. + |++++|| |+|++.. ..++..+.+. +.+++++ +||.......+ ++++++|+++.
T Consensus 415 ----~lA~al~~-~--p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tvi~~-sHd~~~~~~~~d~v~~l~~G~i~~ 485 (506)
T PRK13549 415 ----VLAKCLLL-N--PKILILDEPTRGIDVGAKYEIYKLINQLVQQ-GVAIIVI-SSELPEVLGLSDRVLVMHEGKLKG 485 (506)
T ss_pred ----HHHHHHhh-C--CCEEEEcCCCCCcCHhHHHHHHHHHHHHHHC-CCEEEEE-CCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999996 5 8999999 9999322 2233444443 4567777 99998876544 88999999988
Q ss_pred Eecccch
Q psy16304 410 LISAKNL 416 (537)
Q Consensus 410 ~g~nkdl 416 (537)
.+...++
T Consensus 486 ~~~~~~~ 492 (506)
T PRK13549 486 DLINHNL 492 (506)
T ss_pred EeccccC
Confidence 7776654
No 215
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.76 E-value=8e-20 Score=201.18 Aligned_cols=202 Identities=16% Similarity=0.119 Sum_probs=128.6
Q ss_pred ccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEEC-CcEEEEEeecCCCchhhHHHHhhhh
Q psy16304 185 LPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYG-NKYEVFLYDLGGSEDFRTIWKQYLG 263 (537)
Q Consensus 185 ~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~-g~~~i~~~D~~G~~~~r~~~~~~i~ 263 (537)
+-.+++|.+.+|++++|+|+||||||||+++|+|. ..|++| +|.++ |+....+.+.. .......+..++
T Consensus 299 il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl----~~p~~G----~i~~~~g~~~~~~~~~~--~~~~~~~~~~i~ 368 (520)
T TIGR03269 299 AVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGV----LEPTSG----EVNVRVGDEWVDMTKPG--PDGRGRAKRYIG 368 (520)
T ss_pred EEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCe----EEEEecCCccccccccc--hhhHHHHhhhEE
Confidence 34567888999999999999999999999999999 899999 88884 42100111110 000111235689
Q ss_pred ccccCCCCCCCccceeeEEeecCcccccCCcccccc-cCcCCccccCCccEEEeccCcc----CccchhhhhcCCCceee
Q psy16304 264 TVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTS-ATHLPLVDFRSVPILVLGLDNA----GKSSIIKRILGEPIISL 338 (537)
Q Consensus 264 ~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~-~~~l~~~~~~~~~L~llGl~~~----gKs~li~~LSgG~rqrv 338 (537)
+++|++.+++..+. . +++...+.. ...-....+....+..+|+.+. .....+.+|||||+||+
T Consensus 369 ~v~q~~~l~~~~tv-----~-------e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv 436 (520)
T TIGR03269 369 ILHQEYDLYPHRTV-----L-------DNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRV 436 (520)
T ss_pred EEccCcccCCCCcH-----H-------HHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHH
Confidence 99998765543222 0 111100000 0000000112233445677541 12455899999999999
Q ss_pred ecccccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEE
Q psy16304 339 VPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVY 409 (537)
Q Consensus 339 s~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~ 409 (537)
+++++++. + |+++++| |+|++.. ...+..+.++.+.+++++ +||.......+ ++++++|+++.
T Consensus 437 ----~laral~~-~--p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~v-sHd~~~~~~~~d~i~~l~~G~i~~ 508 (520)
T TIGR03269 437 ----ALAQVLIK-E--PRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIV-SHDMDFVLDVCDRAALMRDGKIVK 508 (520)
T ss_pred ----HHHHHHhc-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEE-eCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999996 5 8999999 9999322 223334334445677777 89988876544 88999999988
Q ss_pred Eecccch
Q psy16304 410 LISAKNL 416 (537)
Q Consensus 410 ~g~nkdl 416 (537)
.+.++++
T Consensus 509 ~g~~~~~ 515 (520)
T TIGR03269 509 IGDPEEI 515 (520)
T ss_pred ECCHHHH
Confidence 7766554
No 216
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=3.4e-19 Score=169.09 Aligned_cols=153 Identities=18% Similarity=0.181 Sum_probs=104.1
Q ss_pred ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304 187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS 266 (537)
Q Consensus 187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~ 266 (537)
.++++.+.+|++++|+|+||||||||+++|+|. +.|+.| ++.++| .++..++. ....++..+++++
T Consensus 17 ~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~----~~~~~G----~i~~~g-~~~~~~~~-----~~~~~~~~i~~~~ 82 (178)
T cd03229 17 NDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGL----EEPDSG----SILIDG-EDLTDLED-----ELPPLRRRIGMVF 82 (178)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCce----EEEECC-EEccccch-----hHHHHhhcEEEEe
Confidence 345677889999999999999999999999999 999999 999887 44432210 0112335688888
Q ss_pred cCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccccccc
Q psy16304 267 QTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNR 346 (537)
Q Consensus 267 Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~ 346 (537)
|++.++...+ ..+.+. +. ||+||+||+ .+++
T Consensus 83 q~~~~~~~~t----------------------~~~~l~-----------~~------------lS~G~~qr~----~la~ 113 (178)
T cd03229 83 QDFALFPHLT----------------------VLENIA-----------LG------------LSGGQQQRV----ALAR 113 (178)
T ss_pred cCCccCCCCC----------------------HHHhee-----------ec------------CCHHHHHHH----HHHH
Confidence 8755221111 111000 00 999999999 9999
Q ss_pred ceeccCCceEEEEEe--cCchhhHH-----HHHHHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCc
Q psy16304 347 ARVEYGNKYEVFLYD--LGGSEDFR-----TIWKQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNC 406 (537)
Q Consensus 347 all~~~e~p~lllLD--T~Gl~~~~-----~l~~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ 406 (537)
+++. + |+++++| |+|++... ..+..+.++.+.+++++ +|+....... + ++++++|+
T Consensus 114 al~~-~--p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~-sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 114 ALAM-D--PDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLV-THDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred HHHC-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhcCEEEEEeCCC
Confidence 9996 5 8999999 99994332 23334433324567777 8888877643 3 66676653
No 217
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.76 E-value=2.3e-19 Score=173.50 Aligned_cols=168 Identities=12% Similarity=0.091 Sum_probs=108.1
Q ss_pred cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304 188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ 267 (537)
Q Consensus 188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q 267 (537)
.+++.+.+|+++||+|+||||||||+++|+|. ..|++| ++.++| ..+... ....+..+++++|
T Consensus 18 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~----~~~~~G----~i~~~g-~~~~~~--------~~~~~~~i~~~~q 80 (201)
T cd03231 18 GLSFTLAAGEALQVTGPNGSGKTTLLRILAGL----SPPLAG----RVLLNG-GPLDFQ--------RDSIARGLLYLGH 80 (201)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCc----EEEECC-Eecccc--------cHHhhhheEEecc
Confidence 45677889999999999999999999999999 999999 888886 433211 1123367899999
Q ss_pred CCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccc
Q psy16304 268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA 347 (537)
Q Consensus 268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~a 347 (537)
++.++...+. .+.+..........+....+..+|+.... ...+.+|||||+||+ +++++
T Consensus 81 ~~~~~~~~tv----------------~e~l~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrl----~lara 139 (201)
T cd03231 81 APGIKTTLSV----------------LENLRFWHADHSDEQVEEALARVGLNGFE-DRPVAQLSAGQQRRV----ALARL 139 (201)
T ss_pred ccccCCCcCH----------------HHHHHhhcccccHHHHHHHHHHcCChhhh-cCchhhCCHHHHHHH----HHHHH
Confidence 8764433221 01000000000011122233455665443 445889999999999 99999
Q ss_pred eeccCCceEEEEEe--cCchhhHH-----HHHHHHHhcCCEEEEEEeCCCcchhhhhh
Q psy16304 348 RVEYGNKYEVFLYD--LGGSEDFR-----TIWKQYLGTVSQTLLVSHSLSGRPDDRCQ 398 (537)
Q Consensus 348 ll~~~e~p~lllLD--T~Gl~~~~-----~l~~~~~~~~~~vIlVvdshd~~~~~~~~ 398 (537)
++. + |+++++| |+|++... ..+..+.+. +.+++++ +|+.......+
T Consensus 140 l~~-~--p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-g~tiii~-sH~~~~~~~~~ 192 (201)
T cd03231 140 LLS-G--RPLWILDEPTTALDKAGVARFAEAMAGHCAR-GGMVVLT-THQDLGLSEAG 192 (201)
T ss_pred Hhc-C--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEE-ecCchhhhhcc
Confidence 997 5 8999999 99993322 222333333 4466666 77766555443
No 218
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.76 E-value=9.8e-20 Score=179.70 Aligned_cols=191 Identities=17% Similarity=0.105 Sum_probs=122.5
Q ss_pred cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccC----ceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhh
Q psy16304 188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVP----TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLG 263 (537)
Q Consensus 188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~P----t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~ 263 (537)
++++.+.+|++++|+|+||||||||+++|+|. ..| ++| +|.++| .++..+ ......++
T Consensus 4 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~p~~~~~~G----~i~~~g-~~~~~~---------~~~~~~i~ 65 (230)
T TIGR02770 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGL----LPPGLTQTSG----EILLDG-RPLLPL---------SIRGRHIA 65 (230)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhcC----CCCccCcccc----EEEECC-Eechhh---------hhhhheeE
Confidence 45677889999999999999999999999999 888 899 888887 443211 11124689
Q ss_pred ccccCCC-CCC-CccceeeEEeecCcccccCCcccccccCcCC--ccccCCccEEEeccCc--cCccchhhhhcCCCcee
Q psy16304 264 TVSQTPL-GRP-DSRTCQVYLIMCGVHQVSGIPDELTSATHLP--LVDFRSVPILVLGLDN--AGKSSIIKRILGEPIIS 337 (537)
Q Consensus 264 ~v~Q~~~-l~~-~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~--~~~~~~~~L~llGl~~--~gKs~li~~LSgG~rqr 337 (537)
+++|++. .+. ..+. . +++........... ...+....+..+|+.. ......+..|||||+||
T Consensus 66 ~~~q~~~~~~~~~~t~-----~-------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qr 133 (230)
T TIGR02770 66 TIMQNPRTAFNPLFTM-----G-------NHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQR 133 (230)
T ss_pred EEecCchhhcCcccCH-----H-------HHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHH
Confidence 9999874 121 1111 0 00000000000000 0011122334556652 11234478999999999
Q ss_pred eecccccccceeccCCceEEEEEe--cCchhhHH-----HHHHHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEE
Q psy16304 338 LVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR-----TIWKQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQV 408 (537)
Q Consensus 338 vs~ti~la~all~~~e~p~lllLD--T~Gl~~~~-----~l~~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii 408 (537)
+ +++++++. + |++++|| |+|++... ..+..+.++.+.+++++ +|+....... + ++++++|+++
T Consensus 134 v----~laral~~-~--p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~-sH~~~~~~~~~d~i~~l~~G~i~ 205 (230)
T TIGR02770 134 V----MIALALLL-E--PPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLI-THDLGVVARIADEVAVMDDGRIV 205 (230)
T ss_pred H----HHHHHHhc-C--CCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhCCEEEEEECCEEE
Confidence 9 99999996 5 8999999 99994332 23334433334567777 8988877643 3 8899999999
Q ss_pred EEecccch
Q psy16304 409 YLISAKNL 416 (537)
Q Consensus 409 ~~g~nkdl 416 (537)
..+.+.++
T Consensus 206 ~~~~~~~~ 213 (230)
T TIGR02770 206 ERGTVKEI 213 (230)
T ss_pred EeCCHHHH
Confidence 88776665
No 219
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.76 E-value=7.4e-20 Score=184.29 Aligned_cols=205 Identities=14% Similarity=0.099 Sum_probs=142.2
Q ss_pred ccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCcccc-C----ceeeeeEEEEECCcEEEEEeecCCCchhhHH
Q psy16304 183 VLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLV-P----TVGFNRARVEYGNKYEVFLYDLGGSEDFRTI 257 (537)
Q Consensus 183 ~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~-P----t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~ 257 (537)
+.+..+++|.+++|+++||||.+||||||+.+.|.|. .. | +.| ++.++| .++.-.+. .+.+.+
T Consensus 18 v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~l----lp~~~~~i~~G----~i~f~g-~~l~~l~~---~~~~~i 85 (316)
T COG0444 18 VKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGL----LPKPNARIVGG----EILFDG-KDLLSLSE---KELRKI 85 (316)
T ss_pred EEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhc----cCCCCCeEeee----EEEECC-cccccCCH---HHHHhh
Confidence 4567788999999999999999999999999999998 65 2 445 888886 43322221 133355
Q ss_pred HHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcC----CccccCCccEEEeccCcc--Cccchhhhhc
Q psy16304 258 WKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHL----PLVDFRSVPILVLGLDNA--GKSSIIKRIL 331 (537)
Q Consensus 258 ~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l----~~~~~~~~~L~llGl~~~--gKs~li~~LS 331 (537)
..+.++++||++.-..+-.. .-..++.+.+...... +...++...+..+|+++. --.+++++||
T Consensus 86 RG~~I~mIfQ~p~~sLnPv~----------~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelS 155 (316)
T COG0444 86 RGKEIAMIFQDPMTSLNPVM----------TIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELS 155 (316)
T ss_pred cCceEEEEEcCchhhcCChh----------hHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccC
Confidence 56789999999762111000 0011112222111111 112234455668888875 3467799999
Q ss_pred CCCceeeecccccccceeccCCceEEEEEe--cCch-----hhHHHHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhh
Q psy16304 332 GEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGS-----EDFRTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLM 402 (537)
Q Consensus 332 gG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl-----~~~~~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll 402 (537)
|||+||+ .+|.+++. + |+++|.| |.++ ..+..+++++.++.+.+++++ |||.......+ +.+|
T Consensus 156 GGMrQRV----~IAmala~-~--P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilI-THDl~vva~~aDri~VM 227 (316)
T COG0444 156 GGMRQRV----MIAMALAL-N--PKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILI-THDLGVVAEIADRVAVM 227 (316)
T ss_pred CcHHHHH----HHHHHHhC-C--CCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhcceEEEE
Confidence 9999999 88888885 4 8999999 8888 344445567767677788888 89998776544 9999
Q ss_pred cCCcEEEEecccchh
Q psy16304 403 SCNCQVYLISAKNLS 417 (537)
Q Consensus 403 ~~G~ii~~g~nkdl~ 417 (537)
..|+++..|...++.
T Consensus 228 YaG~iVE~g~~~~i~ 242 (316)
T COG0444 228 YAGRIVEEGPVEEIF 242 (316)
T ss_pred ECcEEEEeCCHHHHh
Confidence 999999999988763
No 220
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=9.9e-20 Score=182.06 Aligned_cols=211 Identities=12% Similarity=0.115 Sum_probs=131.1
Q ss_pred hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCcccc--C---
Q psy16304 152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLV--P--- 226 (537)
Q Consensus 152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~--P--- 226 (537)
.+.++++.+.|++... -.++++.+.+|++++|+|+||||||||+++|+|. .. |
T Consensus 4 ~l~~~nl~~~~~~~~~------------------l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~~~~~~~ 61 (252)
T PRK14256 4 KVKLEQLNVHFGKNHA------------------VKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRM----HDLVPSAR 61 (252)
T ss_pred EEEEEEEEEEeCCeeE------------------EecceEEEcCCCEEEEECCCCCCHHHHHHHHHhc----ccCCCCCC
Confidence 4566777776653222 2345677889999999999999999999999998 65 3
Q ss_pred ceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC--
Q psy16304 227 TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP-- 304 (537)
Q Consensus 227 t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~-- 304 (537)
+.| +|.++| ..+...+. . . ...+..+++++|++.++...+.. +++...+.......
T Consensus 62 ~~G----~v~~~g-~~i~~~~~---~-~-~~~~~~i~~~~q~~~~~~~~tv~------------enl~~~~~~~~~~~~~ 119 (252)
T PRK14256 62 VTG----KILLDD-TDIYDRGV---D-P-VSIRRRVGMVFQKPNPFPAMSIY------------DNVIAGYKLNGRVNRS 119 (252)
T ss_pred Cce----EEEECC-EEcccccC---C-h-HHhhccEEEEecCCCCCCcCcHH------------HHHHhHHHhcCCCCHH
Confidence 689 888887 44321111 0 1 12236799999997765432220 00000000000000
Q ss_pred -ccccCCccEEEeccCcc---CccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-----HHHHH
Q psy16304 305 -LVDFRSVPILVLGLDNA---GKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWK 373 (537)
Q Consensus 305 -~~~~~~~~L~llGl~~~---gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~ 373 (537)
........+..+|+... .....+.+||+||+||+ +++++++. + |+++++| |+|++.. ..+++
T Consensus 120 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl----~laral~~-~--p~llllDEP~~gLD~~~~~~l~~~l~ 192 (252)
T PRK14256 120 EADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRL----CIARTIAV-K--PEVILMDEPASALDPISTLKIEELIE 192 (252)
T ss_pred HHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHH----HHHHHHhc-C--CCEEEEcCCcccCCHHHHHHHHHHHH
Confidence 00011122223444220 11234788999999999 99999996 5 8999999 9998332 23334
Q ss_pred HHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEecccch
Q psy16304 374 QYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 374 ~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~nkdl 416 (537)
.+.+ +.+++++ +|+....... + ++++++|++...+..+++
T Consensus 193 ~~~~--~~tiiiv-sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14256 193 ELKE--KYTIIIV-THNMQQAARVSDYTAFFYMGDLVECGETKKI 234 (252)
T ss_pred HHHh--CCcEEEE-ECCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 4432 3566666 8998877543 3 888999999988877665
No 221
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.76 E-value=1.1e-19 Score=176.04 Aligned_cols=175 Identities=14% Similarity=0.080 Sum_probs=109.1
Q ss_pred ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304 187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS 266 (537)
Q Consensus 187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~ 266 (537)
.++++.+.+|++++|+|+||||||||+++|+|. +.|+.| ++.++| ..+..+.. .......++.+++++
T Consensus 15 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~----~~~~~G----~i~~~g-~~~~~~~~---~~~~~~~~~~i~~~~ 82 (206)
T TIGR03608 15 DDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLL----EKFDSG----QVYLNG-KETPPLNS---KKASKFRREKLGYLF 82 (206)
T ss_pred eceEEEEeCCcEEEEECCCCCCHHHHHHHHhcC----CCCCCe----EEEECC-EEccccch---hhHHHHHHhCeeEEe
Confidence 345677889999999999999999999999999 999999 899887 44321111 011112346799999
Q ss_pred cCCCCCCCccceeeEEeecCcccccCCcccccc--cCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccccc
Q psy16304 267 QTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTS--ATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF 344 (537)
Q Consensus 267 Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~--~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~l 344 (537)
|++.+++..+.. + ++...... ........+....+..+|+.... ...+.+||+||+||+ ++
T Consensus 83 q~~~~~~~~t~~-----e-------~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~lS~G~~qr~----~l 145 (206)
T TIGR03608 83 QNFALIENETVE-----E-------NLDLGLKYKKLSKKEKREKKKEALEKVGLNLKL-KQKIYELSGGEQQRV----AL 145 (206)
T ss_pred cchhhccCCcHH-----H-------HHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhh-cCChhhCCHHHHHHH----HH
Confidence 997765432220 0 00000000 00000001112234456665443 445889999999999 99
Q ss_pred ccceeccCCceEEEEEe--cCchhhH--HHH---HHHHHhcCCEEEEEEeCCCcchhh
Q psy16304 345 NRARVEYGNKYEVFLYD--LGGSEDF--RTI---WKQYLGTVSQTLLVSHSLSGRPDD 395 (537)
Q Consensus 345 a~all~~~e~p~lllLD--T~Gl~~~--~~l---~~~~~~~~~~vIlVvdshd~~~~~ 395 (537)
+++++. + |+++++| |+|++.. ..+ ++.+.+. +.+++++ +|+.....
T Consensus 146 aral~~-~--p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~~-sh~~~~~~ 198 (206)
T TIGR03608 146 ARAILK-D--PPLILADEPTGSLDPKNRDEVLDLLLELNDE-GKTIIIV-THDPEVAK 198 (206)
T ss_pred HHHHHc-C--CCEEEEeCCcCCCCHHHHHHHHHHHHHHHhc-CCEEEEE-eCCHHHHh
Confidence 999996 5 8999999 9999322 222 2333333 4456666 78776443
No 222
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.76 E-value=7.9e-20 Score=201.24 Aligned_cols=201 Identities=15% Similarity=0.099 Sum_probs=126.9
Q ss_pred ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccc--cCceeeeeEEEEECC----------------------cEE
Q psy16304 187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISL--VPTVGFNRARVEYGN----------------------KYE 242 (537)
Q Consensus 187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~--~Pt~G~t~~~i~i~g----------------------~~~ 242 (537)
.++++.+.+|++++|+|+||||||||+++|+|. . .|+.| +|.+++ +.+
T Consensus 17 ~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl----~~~~p~~G----~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~ 88 (520)
T TIGR03269 17 KNISFTIEEGEVLGILGRSGAGKSVLMHVLRGM----DQYEPTSG----RIIYHVALCEKCGYVERPSKVGEPCPVCGGT 88 (520)
T ss_pred eceeEEEcCCCEEEEECCCCCCHHHHHHHHhhc----ccCCCCce----EEEEecccccccccccccccccccccccccc
Confidence 345677889999999999999999999999998 6 69999 877752 011
Q ss_pred EEE--eecCC-CchhhHHHHhhhhccccC-CCCCCCccceeeEEeecCcccccCCcccccccCcCC---ccccCCccEEE
Q psy16304 243 VFL--YDLGG-SEDFRTIWKQYLGTVSQT-PLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDFRSVPILV 315 (537)
Q Consensus 243 i~~--~D~~G-~~~~r~~~~~~i~~v~Q~-~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~~~~~L~l 315 (537)
+.. .+... .......++..+++++|+ ..++...+. .+++...+... .+. ...+....+..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv------------~~~l~~~~~~~-~~~~~~~~~~~~~~l~~ 155 (520)
T TIGR03269 89 LEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTV------------LDNVLEALEEI-GYEGKEAVGRAVDLIEM 155 (520)
T ss_pred ccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCH------------HHHHHHHHHHc-CCCHHHHHHHHHHHHHH
Confidence 100 01100 001112234668999997 444433221 01111000000 010 01122334556
Q ss_pred eccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHHHH-----HHHHHhcCCEEEEEEeC
Q psy16304 316 LGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRTI-----WKQYLGTVSQTLLVSHS 388 (537)
Q Consensus 316 lGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~l-----~~~~~~~~~~vIlVvds 388 (537)
+|+.... ...+.+|||||+||+ ++|++++. + |++++|| |++++..... ++++.++.+.+++++ +
T Consensus 156 ~gl~~~~-~~~~~~LSgGq~qrv----~iA~al~~-~--p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviiv-t 226 (520)
T TIGR03269 156 VQLSHRI-THIARDLSGGEKQRV----VLARQLAK-E--PFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLT-S 226 (520)
T ss_pred cCChhhh-hcCcccCCHHHHHHH----HHHHHHhc-C--CCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEE-e
Confidence 7776543 445899999999999 99999996 5 8999999 9999443332 345544445567777 8
Q ss_pred CCcchhhhhh--hhhhcCCcEEEEecccchh
Q psy16304 389 LSGRPDDRCQ--VYLMSCNCQVYLISAKNLS 417 (537)
Q Consensus 389 hd~~~~~~~~--i~ll~~G~ii~~g~nkdl~ 417 (537)
||.......+ ++++++|+++..+...++.
T Consensus 227 Hd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 257 (520)
T TIGR03269 227 HWPEVIEDLSDKAIWLENGEIKEEGTPDEVV 257 (520)
T ss_pred CCHHHHHHhcCEEEEEeCCEEeeecCHHHHH
Confidence 9998876543 8899999988776655553
No 223
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.76 E-value=1.1e-19 Score=199.32 Aligned_cols=209 Identities=12% Similarity=0.053 Sum_probs=133.7
Q ss_pred hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304 152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN 231 (537)
Q Consensus 152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t 231 (537)
++.++++.+.|++..+ -.++++.+.+|++++|+|+||||||||+++|+|. +.|++|
T Consensus 4 ~l~~~~l~~~~~~~~i------------------l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl----~~p~~G-- 59 (501)
T PRK11288 4 YLSFDGIGKTFPGVKA------------------LDDISFDCRAGQVHALMGENGAGKSTLLKILSGN----YQPDAG-- 59 (501)
T ss_pred eEEEeeeEEEECCEEE------------------EeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCC----CCCCCC--
Confidence 4567778777654222 2345677889999999999999999999999999 899999
Q ss_pred eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccc--eeeEEeecCcccccCCcccccccCcCCccccC
Q psy16304 232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRT--CQVYLIMCGVHQVSGIPDELTSATHLPLVDFR 309 (537)
Q Consensus 232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~--~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~ 309 (537)
+|.++| .++... . ....++..+++++|++.+++..+. .+.+.. ...............+.
T Consensus 60 --~I~~~g-~~i~~~-----~-~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~---------~~~~~~~~~~~~~~~~~ 121 (501)
T PRK11288 60 --SILIDG-QEMRFA-----S-TTAALAAGVAIIYQELHLVPEMTVAENLYLGQ---------LPHKGGIVNRRLLNYEA 121 (501)
T ss_pred --EEEECC-EECCCC-----C-HHHHHhCCEEEEEechhccCCCCHHHHHHhcc---------cccccCCCCHHHHHHHH
Confidence 888886 433211 1 112334679999998775544322 100000 00000000000001112
Q ss_pred CccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH--HHH---HHHHhcCCEE
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR--TIW---KQYLGTVSQT 382 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~--~l~---~~~~~~~~~v 382 (537)
...+..+|+.... ...+.+|||||+||+ +++++++. + |++++|| |+|++... .++ ..+.+ .+.+
T Consensus 122 ~~~l~~~~l~~~~-~~~~~~LSgGq~qrv----~laral~~-~--p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~t 192 (501)
T PRK11288 122 REQLEHLGVDIDP-DTPLKYLSIGQRQMV----EIAKALAR-N--ARVIAFDEPTSSLSAREIEQLFRVIRELRA-EGRV 192 (501)
T ss_pred HHHHHHcCCCCCc-CCchhhCCHHHHHHH----HHHHHHHh-C--CCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-CCCE
Confidence 2334466776443 455899999999999 99999996 5 8999999 99994332 222 33322 3456
Q ss_pred EEEEeCCCcchhhhhh--hhhhcCCcEEEEec
Q psy16304 383 LLVSHSLSGRPDDRCQ--VYLMSCNCQVYLIS 412 (537)
Q Consensus 383 IlVvdshd~~~~~~~~--i~ll~~G~ii~~g~ 412 (537)
++++ +|+.......+ ++++++|+++..+.
T Consensus 193 iiii-tHd~~~~~~~~d~i~~l~~G~i~~~~~ 223 (501)
T PRK11288 193 ILYV-SHRMEEIFALCDAITVFKDGRYVATFD 223 (501)
T ss_pred EEEE-eCCHHHHHHhCCEEEEEECCEEEeecC
Confidence 7777 89988776543 89999999876543
No 224
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=1.2e-19 Score=183.17 Aligned_cols=210 Identities=13% Similarity=0.122 Sum_probs=129.8
Q ss_pred hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCcccc-----C
Q psy16304 152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLV-----P 226 (537)
Q Consensus 152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~-----P 226 (537)
++.++++.+.|++.... .++++.+.+|++++|+|+||||||||+++|+|. .. |
T Consensus 21 ~l~~~~l~~~~~~~~il------------------~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~~~~~~~ 78 (268)
T PRK14248 21 ILEVKDLSIYYGEKRAV------------------NDISMDIEKHAVTALIGPSGCGKSTFLRSINRM----NDLIPSAR 78 (268)
T ss_pred eEEEEEEEEEeCCceee------------------eceEEEEcCCCEEEEECCCCCCHHHHHHHHHhc----ccccCCCC
Confidence 46778888877543222 234577889999999999999999999999997 43 7
Q ss_pred ceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC--
Q psy16304 227 TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP-- 304 (537)
Q Consensus 227 t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~-- 304 (537)
+.| ++.++| .++...+ .. ...++..+++++|++.++.. +. .+ ++...+.......
T Consensus 79 ~~G----~i~~~g-~~i~~~~----~~-~~~~~~~i~~v~q~~~~~~~-tv-----~e-------nl~~~~~~~~~~~~~ 135 (268)
T PRK14248 79 SEG----EILYEG-LNILDSN----IN-VVNLRREIGMVFQKPNPFPK-SI-----YN-------NITHALKYAGERRKS 135 (268)
T ss_pred Cce----EEEECC-EEccccc----cc-HHHHhccEEEEecCCccCcc-cH-----HH-------HHHHHHHhcCCCcHH
Confidence 899 888887 4432111 00 11233679999999875542 11 11 0000000000000
Q ss_pred -ccccCCccEEEeccCc---cCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH-----HHHH
Q psy16304 305 -LVDFRSVPILVLGLDN---AGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR-----TIWK 373 (537)
Q Consensus 305 -~~~~~~~~L~llGl~~---~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~-----~l~~ 373 (537)
........+..+|+.. ......+.+|||||+||+ +++++++. + |++++|| |+|++... .++.
T Consensus 136 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl----~laral~~-~--p~lllLDEPt~~LD~~~~~~l~~~l~ 208 (268)
T PRK14248 136 VLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRL----CIARTLAM-K--PAVLLLDEPASALDPISNAKIEELIT 208 (268)
T ss_pred HHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHH----HHHHHHhC-C--CCEEEEcCCCcccCHHHHHHHHHHHH
Confidence 0000011111223211 112344788999999999 99999996 5 8999999 99993322 2333
Q ss_pred HHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEecccch
Q psy16304 374 QYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 374 ~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~nkdl 416 (537)
.+. . ..+++++ +|+....... + ++++++|+++..+..+++
T Consensus 209 ~~~-~-~~tiii~-tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 250 (268)
T PRK14248 209 ELK-E-EYSIIIV-THNMQQALRVSDRTAFFLNGDLVEYDQTEQI 250 (268)
T ss_pred HHh-c-CCEEEEE-EeCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 432 2 3566666 8888876543 3 899999999888776665
No 225
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.76 E-value=7.8e-20 Score=201.66 Aligned_cols=198 Identities=13% Similarity=0.079 Sum_probs=128.3
Q ss_pred ccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhc
Q psy16304 185 LPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGT 264 (537)
Q Consensus 185 ~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~ 264 (537)
+-.++++.+.+|++++|+|+||||||||+++|+|. . |++| +|.++| .++..++. ... ..++..+++
T Consensus 301 il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl----~-~~~G----~i~~~g-~~i~~~~~---~~~-~~~~~~i~~ 366 (529)
T PRK15134 301 VVKNISFTLRPGETLGLVGESGSGKSTTGLALLRL----I-NSQG----EIWFDG-QPLHNLNR---RQL-LPVRHRIQV 366 (529)
T ss_pred eeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCc----C-CCCc----EEEECC-EEccccch---hhH-HHhhhceEE
Confidence 34567888999999999999999999999999998 6 5899 999887 54432211 111 112356899
Q ss_pred cccCCC--CCCCccceeeEEeecCcccccCCcccccccC-cCC---ccccCCccEEEeccCccCccchhhhhcCCCceee
Q psy16304 265 VSQTPL--GRPDSRTCQVYLIMCGVHQVSGIPDELTSAT-HLP---LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISL 338 (537)
Q Consensus 265 v~Q~~~--l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~-~l~---~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrv 338 (537)
++|++. +++..+. . +++...+.... .+. ...+....+..+|+........+.+|||||+||+
T Consensus 367 v~q~~~~~l~~~~tv-----~-------e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv 434 (529)
T PRK15134 367 VFQDPNSSLNPRLNV-----L-------QIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRI 434 (529)
T ss_pred EEeCchhhcCCcccH-----H-------HHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHH
Confidence 999863 3332221 0 00100000000 000 0111223344677753223455899999999999
Q ss_pred ecccccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEE
Q psy16304 339 VPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVY 409 (537)
Q Consensus 339 s~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~ 409 (537)
+++++++. + |++++|| |+|++.. ..++.++.++.+.+++++ +||.......+ ++++++|+++.
T Consensus 435 ----~la~al~~-~--p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~v-sHd~~~~~~~~d~i~~l~~G~i~~ 506 (529)
T PRK15134 435 ----AIARALIL-K--PSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFI-SHDLHVVRALCHQVIVLRQGEVVE 506 (529)
T ss_pred ----HHHHHHhC-C--CCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEE-eCCHHHHHHhcCeEEEEECCEEEE
Confidence 99999996 5 8999999 9999333 223344433434567777 89988776543 89999999988
Q ss_pred Eecccch
Q psy16304 410 LISAKNL 416 (537)
Q Consensus 410 ~g~nkdl 416 (537)
.+...++
T Consensus 507 ~~~~~~~ 513 (529)
T PRK15134 507 QGDCERV 513 (529)
T ss_pred EcCHHHH
Confidence 8776665
No 226
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.76 E-value=1.1e-19 Score=181.47 Aligned_cols=211 Identities=12% Similarity=0.105 Sum_probs=129.7
Q ss_pred hhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCcccc--C--
Q psy16304 151 ILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLV--P-- 226 (537)
Q Consensus 151 ~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~--P-- 226 (537)
.++.++++.+.|++... -.++++.+.+|++++|+|+||||||||+++|+|. .. |
T Consensus 4 ~~l~~~~l~~~~~~~~~------------------l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~~~p~~ 61 (252)
T PRK14239 4 PILQVSDLSVYYNKKKA------------------LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRM----NDLNPEV 61 (252)
T ss_pred ceEEEEeeEEEECCeee------------------eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcc----cccCCCC
Confidence 35677888887654222 2334577889999999999999999999999997 53 5
Q ss_pred -ceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCc
Q psy16304 227 -TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPL 305 (537)
Q Consensus 227 -t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~ 305 (537)
++| +|.++| ..+...+ . . ...++..+++++|++.++. .+. .+ ++............
T Consensus 62 ~~~G----~i~~~g-~~~~~~~---~-~-~~~~~~~i~~v~q~~~~~~-~tv-----~e-------nl~~~~~~~~~~~~ 118 (252)
T PRK14239 62 TITG----SIVYNG-HNIYSPR---T-D-TVDLRKEIGMVFQQPNPFP-MSI-----YE-------NVVYGLRLKGIKDK 118 (252)
T ss_pred Cccc----eEEECC-EECcCcc---c-c-hHhhhhcEEEEecCCccCc-CcH-----HH-------HHHHHHHHcCCCcH
Confidence 589 888887 4332100 0 0 1123367999999977553 111 01 00000000000000
Q ss_pred ---cccCCccEEEeccCc---cCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-----HHHH
Q psy16304 306 ---VDFRSVPILVLGLDN---AGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIW 372 (537)
Q Consensus 306 ---~~~~~~~L~llGl~~---~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~ 372 (537)
.......+..+|+.. ......+.+||+||+||+ +++++++. + |+++++| |+|++.. ..++
T Consensus 119 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv----~laral~~-~--p~llllDEPt~~LD~~~~~~l~~~l 191 (252)
T PRK14239 119 QVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRV----CIARVLAT-S--PKIILLDEPTSALDPISAGKIEETL 191 (252)
T ss_pred HHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHH----HHHHHHhc-C--CCEEEEcCCccccCHHHHHHHHHHH
Confidence 000111122333321 112344788999999999 99999996 5 8999999 9999332 2222
Q ss_pred HHHHhcCCEEEEEEeCCCcchhhh-hh-hhhhcCCcEEEEecccch
Q psy16304 373 KQYLGTVSQTLLVSHSLSGRPDDR-CQ-VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 373 ~~~~~~~~~vIlVvdshd~~~~~~-~~-i~ll~~G~ii~~g~nkdl 416 (537)
..+. . +.+++++ +|+...... ++ ++++++|+++..+.+.++
T Consensus 192 ~~~~-~-~~tii~~-sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 234 (252)
T PRK14239 192 LGLK-D-DYTMLLV-TRSMQQASRISDRTGFFLDGDLIEYNDTKQM 234 (252)
T ss_pred HHHh-h-CCeEEEE-ECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 3332 2 3566666 888877654 33 899999999988877766
No 227
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=8.4e-20 Score=185.30 Aligned_cols=213 Identities=12% Similarity=0.075 Sum_probs=135.4
Q ss_pred hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304 152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN 231 (537)
Q Consensus 152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t 231 (537)
++.++++.+.|+... . ..+-.++++.+.+|++++|+|+||||||||+++|+|. +.|++|
T Consensus 4 ~l~~~~l~~~~~~~~---~------------~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl----~~~~~G-- 62 (277)
T PRK13642 4 ILEVENLVFKYEKES---D------------VNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGL----FEEFEG-- 62 (277)
T ss_pred eEEEEEEEEEcCCCC---c------------CeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC----CCCCCC--
Confidence 456788888765311 0 0122345677889999999999999999999999999 999999
Q ss_pred eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCC-CCCCccceeeEEeecCcccccCCccccc--ccCcCCcccc
Q psy16304 232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL-GRPDSRTCQVYLIMCGVHQVSGIPDELT--SATHLPLVDF 308 (537)
Q Consensus 232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~-l~~~~~~~il~v~Ds~~~~~~~l~~~l~--~~~~l~~~~~ 308 (537)
+|.++| ..+.. . .. ...+..+++++|++. .+...+. .+ ++..... ..........
T Consensus 63 --~i~~~g-~~i~~---~---~~-~~~~~~i~~v~q~~~~~~~~~tv-----~e-------ni~~~~~~~~~~~~~~~~~ 120 (277)
T PRK13642 63 --KVKIDG-ELLTA---E---NV-WNLRRKIGMVFQNPDNQFVGATV-----ED-------DVAFGMENQGIPREEMIKR 120 (277)
T ss_pred --EEEECC-EECCc---C---CH-HHHhcceEEEEECHHHhhccCCH-----HH-------HHHhhHHHcCCCHHHHHHH
Confidence 999887 43321 1 11 123367999999863 2221111 00 0000000 0000000011
Q ss_pred CCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCE
Q psy16304 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQ 381 (537)
Q Consensus 309 ~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~ 381 (537)
....+..+|+.... ...+.+|||||+||+ +++++++. + |+++++| |+|++.. ...+..+.++.+.
T Consensus 121 ~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv----~lAraL~~-~--p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~ 192 (277)
T PRK13642 121 VDEALLAVNMLDFK-TREPARLSGGQKQRV----AVAGIIAL-R--PEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQL 192 (277)
T ss_pred HHHHHHHCCCHhHh-hCCcccCCHHHHHHH----HHHHHHHc-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 12233456665543 445889999999999 99999996 5 8999999 9998322 2233444443345
Q ss_pred EEEEEeCCCcchhhhhh-hhhhcCCcEEEEecccch
Q psy16304 382 TLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 382 vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g~nkdl 416 (537)
+++++ +|+......++ ++++++|+++..+...++
T Consensus 193 tiil~-sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (277)
T PRK13642 193 TVLSI-THDLDEAASSDRILVMKAGEIIKEAAPSEL 227 (277)
T ss_pred EEEEE-eCCHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 66666 78887766544 899999999888877665
No 228
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.76 E-value=1.5e-19 Score=200.51 Aligned_cols=263 Identities=13% Similarity=0.095 Sum_probs=157.9
Q ss_pred hhhHHHHHhhhcccccccccccccccCccccccccC-CCCCCch-hHHHHHHHHHHHHhhhcccccCCCcccCCCCCCCC
Q psy16304 94 AEIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLS-DDPAPTF-EVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDDP 171 (537)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~-~~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~~~~ 171 (537)
.-..|+..+...++.++.+..+++|+.++++..... ..++.+- ... ......-....+.++++...|++......
T Consensus 279 ~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~v~f~y~~~~~~~~- 355 (555)
T TIGR01194 279 YIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNV--LLLAHDKSVDSIELKDVHMNPKAPEGSEG- 355 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccc--cccccCCCCceEEEEEEEEEeCCCCCCcC-
Confidence 347899999999999999999999999887521110 0000000 000 00000000123566777777653210000
Q ss_pred CcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCC
Q psy16304 172 APTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGS 251 (537)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~ 251 (537)
.+-.++++.+++|++++|+||||+|||||+++|+|. +.|++| +|.++| .++..++.
T Consensus 356 ------------~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~----~~p~~G----~i~~~g-~~i~~~~~--- 411 (555)
T TIGR01194 356 ------------FALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGL----YIPQEG----EILLDG-AAVSADSR--- 411 (555)
T ss_pred ------------ceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCC----CCCCCc----EEEECC-EECCCCCH---
Confidence 112456788889999999999999999999999999 999999 999987 54433222
Q ss_pred chhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhc
Q psy16304 252 EDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRIL 331 (537)
Q Consensus 252 ~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LS 331 (537)
..++..+++++|++.++......-. ..+.+.++ +.+.++..+ + ...+..+ ++ |-+. ...||
T Consensus 412 ----~~~~~~i~~v~q~~~lf~~ti~~n~-~~~~~~~~---~~~~~~~~~-l------~~~~~~l--p~-g~~t-~~~LS 472 (555)
T TIGR01194 412 ----DDYRDLFSAIFADFHLFDDLIGPDE-GEHASLDN---AQQYLQRLE-I------ADKVKIE--DG-GFST-TTALS 472 (555)
T ss_pred ----HHHHhhCcEEccChhhhhhhhhccc-ccchhHHH---HHHHHHHcC-C------chhhccc--cc-ccCC-cccCC
Confidence 2334789999999887754221000 00000000 111111100 0 0000000 11 1111 36799
Q ss_pred CCCceeeecccccccceeccCCceEEEEEe--cCchhhHHH--HHHHHH---hcCCEEEEEEeCCCcchhhhhh-hhhhc
Q psy16304 332 GEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRT--IWKQYL---GTVSQTLLVSHSLSGRPDDRCQ-VYLMS 403 (537)
Q Consensus 332 gG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~--l~~~~~---~~~~~vIlVvdshd~~~~~~~~-i~ll~ 403 (537)
|||+||+ +++|+++. + |+++++| |++++...+ +.+.+. +..+.+++++ +|+......++ +++++
T Consensus 473 gGq~qRl----alaRall~-~--~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiii-sH~~~~~~~~d~i~~l~ 544 (555)
T TIGR01194 473 TGQQKRL----ALICAWLE-D--RPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIII-SHDDQYFELADQIIKLA 544 (555)
T ss_pred HHHHHHH----HHHHHHHc-C--CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEE-eccHHHHHhCCEEEEEE
Confidence 9999999 99999996 5 8999999 999944332 334332 2234566666 78877776666 88999
Q ss_pred CCcEEEE
Q psy16304 404 CNCQVYL 410 (537)
Q Consensus 404 ~G~ii~~ 410 (537)
+|+++..
T Consensus 545 ~G~i~~~ 551 (555)
T TIGR01194 545 AGCIVKD 551 (555)
T ss_pred CCEEEEe
Confidence 9998653
No 229
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.76 E-value=9.7e-20 Score=183.08 Aligned_cols=211 Identities=14% Similarity=0.107 Sum_probs=131.3
Q ss_pred hhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCcccc-----
Q psy16304 151 ILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLV----- 225 (537)
Q Consensus 151 ~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~----- 225 (537)
.++.++++.+.|++..+ -.++++.+.+|++++|+|+||||||||+++|+|. ..
T Consensus 12 ~~l~~~~l~~~~~~~~i------------------l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~~~p~~ 69 (260)
T PRK10744 12 SKIQVRNLNFYYGKFHA------------------LKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRM----YELYPEQ 69 (260)
T ss_pred ceEEEEEEEEEeCCeEE------------------eeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcc----cccCCCC
Confidence 35667888887654221 2335677889999999999999999999999998 65
Q ss_pred CceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCc
Q psy16304 226 PTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPL 305 (537)
Q Consensus 226 Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~ 305 (537)
|+.| +|.++| ..+...+. . ...++..+++++|++.++. .+. .+ ++.........+..
T Consensus 70 p~~G----~i~~~g-~~~~~~~~----~-~~~~~~~i~~~~q~~~~~~-~tv-----~~-------nl~~~~~~~~~~~~ 126 (260)
T PRK10744 70 RAEG----EILLDG-ENILTPKQ----D-IALLRAKVGMVFQKPTPFP-MSI-----YD-------NIAFGVRLFEKLSR 126 (260)
T ss_pred Ccce----EEEECC-EEcccccc----c-hHHHhcceEEEecCCccCc-CcH-----HH-------HHhhhHhhcCCCCH
Confidence 5899 899887 44321110 1 1123367999999977543 111 01 00000000000000
Q ss_pred ---cccCCccEEEeccCc---cCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHHH-----HH
Q psy16304 306 ---VDFRSVPILVLGLDN---AGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRT-----IW 372 (537)
Q Consensus 306 ---~~~~~~~L~llGl~~---~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~-----l~ 372 (537)
..+....+..+|+.. ......+.+|||||+||+ +++++++. + |+++++| |+|++.... .+
T Consensus 127 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv----~laral~~-~--p~lllLDEPt~~LD~~~~~~l~~~L 199 (260)
T PRK10744 127 AEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRL----CIARGIAI-R--PEVLLLDEPCSALDPISTGRIEELI 199 (260)
T ss_pred HHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHH----HHHHHHHC-C--CCEEEEcCCCccCCHHHHHHHHHHH
Confidence 011112233444321 112334788999999999 99999996 5 8999999 999943322 22
Q ss_pred HHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEecccch
Q psy16304 373 KQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 373 ~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~nkdl 416 (537)
.++. . +.+++++ +|+....... + ++++++|+++..+...++
T Consensus 200 ~~~~-~-~~tiii~-sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 242 (260)
T PRK10744 200 TELK-Q-DYTVVIV-THNMQQAARCSDYTAFMYLGELIEFGNTDTI 242 (260)
T ss_pred HHHh-c-CCeEEEE-eCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 3332 2 3466666 8888877543 3 889999999988776665
No 230
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.76 E-value=1.5e-19 Score=175.07 Aligned_cols=172 Identities=12% Similarity=0.109 Sum_probs=110.4
Q ss_pred ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304 187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS 266 (537)
Q Consensus 187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~ 266 (537)
.++++.+.+|++++|+|+||||||||+++|+|. ..|+.| +|.++| ..+... .......+++++
T Consensus 18 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~----~~p~~G----~v~~~g-~~~~~~--------~~~~~~~~~~~~ 80 (204)
T PRK13538 18 SGLSFTLNAGELVQIEGPNGAGKTSLLRILAGL----ARPDAG----EVLWQG-EPIRRQ--------RDEYHQDLLYLG 80 (204)
T ss_pred ecceEEECCCcEEEEECCCCCCHHHHHHHHhCC----CCCCCc----EEEECC-EEcccc--------hHHhhhheEEeC
Confidence 345677889999999999999999999999999 999999 898887 443211 112235688888
Q ss_pred cCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccccccc
Q psy16304 267 QTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNR 346 (537)
Q Consensus 267 Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~ 346 (537)
|.+.+++..+. .+++........ ..........+..+|+.... ...+..|||||+||+ ++++
T Consensus 81 ~~~~~~~~~tv------------~e~l~~~~~~~~-~~~~~~~~~~l~~~gl~~~~-~~~~~~LS~G~~qrl----~la~ 142 (204)
T PRK13538 81 HQPGIKTELTA------------LENLRFYQRLHG-PGDDEALWEALAQVGLAGFE-DVPVRQLSAGQQRRV----ALAR 142 (204)
T ss_pred CccccCcCCcH------------HHHHHHHHHhcC-ccHHHHHHHHHHHcCCHHHh-hCChhhcCHHHHHHH----HHHH
Confidence 88665433222 000000000000 00111122334456665443 445889999999999 9999
Q ss_pred ceeccCCceEEEEEe--cCchhhHH--H---HHHHHHhcCCEEEEEEeCCCcchhhhhh
Q psy16304 347 ARVEYGNKYEVFLYD--LGGSEDFR--T---IWKQYLGTVSQTLLVSHSLSGRPDDRCQ 398 (537)
Q Consensus 347 all~~~e~p~lllLD--T~Gl~~~~--~---l~~~~~~~~~~vIlVvdshd~~~~~~~~ 398 (537)
+++. + |+++++| |+|++... . ++..+.+. ..+++++ +|+..+.+.+.
T Consensus 143 al~~-~--p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiii~-sh~~~~i~~~~ 196 (204)
T PRK13538 143 LWLT-R--APLWILDEPFTAIDKQGVARLEALLAQHAEQ-GGMVILT-THQDLPVASDK 196 (204)
T ss_pred HHhc-C--CCEEEEeCCCccCCHHHHHHHHHHHHHHHHC-CCEEEEE-ecChhhhccCC
Confidence 9997 5 8999999 99993332 2 22333332 4566666 88888776543
No 231
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.75 E-value=1.5e-19 Score=200.29 Aligned_cols=250 Identities=12% Similarity=0.067 Sum_probs=155.9
Q ss_pred hHHHHHhhhcccccccccccccccCccccccccCCCCCC-chhHHHHHHHHHHHHhhhcccccCCCcccCCCCCCCCCcc
Q psy16304 96 IWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAP-TFEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDDPAPT 174 (537)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~~~~~~~ 174 (537)
..|+..++..+..++....+++|+.+++..+...+.+.+ +... ...+.++++...|++.. +
T Consensus 276 ~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~~~~~~~~~~-----------~~~i~~~~v~f~y~~~~----~--- 337 (547)
T PRK10522 276 RTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAEFPRPQAFPD-----------WQTLELRNVTFAYQDNG----F--- 337 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccCc-----------CceEEEEEEEEEeCCCC----e---
Confidence 479999999999999999999999888653221110111 1000 11356777777664321 0
Q ss_pred hhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchh
Q psy16304 175 FENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 254 (537)
Q Consensus 175 ~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~ 254 (537)
+-.++++.+++|++++|+|+||+|||||+++|+|. ++|+.| +|.++| .++..++.
T Consensus 338 ----------~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~----~~~~~G----~i~~~g-~~~~~~~~------ 392 (547)
T PRK10522 338 ----------SVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGL----YQPQSG----EILLDG-KPVTAEQP------ 392 (547)
T ss_pred ----------EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCe----EEEECC-EECCCCCH------
Confidence 12345677889999999999999999999999999 999999 999987 54432222
Q ss_pred hHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCC
Q psy16304 255 RTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEP 334 (537)
Q Consensus 255 r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~ 334 (537)
..+++.+++++|++.++......- ..+.+.+. +.+.++. ...... +. .+....+ -..|||||
T Consensus 393 -~~~~~~i~~v~q~~~lf~~ti~~n--~~~~~~~~---~~~~~~~---~~l~~~----~~-~~~~~~~----G~~LSgGq 454 (547)
T PRK10522 393 -EDYRKLFSAVFTDFHLFDQLLGPE--GKPANPAL---VEKWLER---LKMAHK----LE-LEDGRIS----NLKLSKGQ 454 (547)
T ss_pred -HHHhhheEEEecChhHHHHhhccc--cCchHHHH---HHHHHHH---cCCchh----hh-ccccCCC----CCCCCHHH
Confidence 234478999999988765421100 00000000 1111111 100000 00 0100000 23699999
Q ss_pred ceeeecccccccceeccCCceEEEEEe--cCchhhHHH--HHHHHH---hcCCEEEEEEeCCCcchhhhhh-hhhhcCCc
Q psy16304 335 IISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRT--IWKQYL---GTVSQTLLVSHSLSGRPDDRCQ-VYLMSCNC 406 (537)
Q Consensus 335 rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~--l~~~~~---~~~~~vIlVvdshd~~~~~~~~-i~ll~~G~ 406 (537)
+||+ ++||+++. + |+++++| |++++...+ +++.+. +..+.+++++ +|+.+....++ ++++++|+
T Consensus 455 ~qRl----~lARal~~-~--~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~i-tH~~~~~~~~d~i~~l~~G~ 526 (547)
T PRK10522 455 KKRL----ALLLALAE-E--RDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAI-SHDDHYFIHADRLLEMRNGQ 526 (547)
T ss_pred HHHH----HHHHHHhc-C--CCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEE-EechHHHHhCCEEEEEECCE
Confidence 9999 99999996 5 8999999 999944333 333332 2234566666 67777666665 88999999
Q ss_pred EEEEeccc
Q psy16304 407 QVYLISAK 414 (537)
Q Consensus 407 ii~~g~nk 414 (537)
+....+.+
T Consensus 527 i~e~~~~~ 534 (547)
T PRK10522 527 LSELTGEE 534 (547)
T ss_pred EEEecCCc
Confidence 88765544
No 232
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.75 E-value=9.2e-20 Score=184.01 Aligned_cols=211 Identities=15% Similarity=0.125 Sum_probs=132.9
Q ss_pred hhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccC----
Q psy16304 151 ILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVP---- 226 (537)
Q Consensus 151 ~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~P---- 226 (537)
..+.++++.+.|+... +-.++++.+.+|++++|+|+||||||||+++|+|. ..|
T Consensus 18 ~~l~~~nl~~~~~~~~------------------il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~~~~~~ 75 (267)
T PRK14235 18 IKMRARDVSVFYGEKQ------------------ALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRM----NDTIDGC 75 (267)
T ss_pred ceEEEEeEEEEECCEE------------------EEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhh----cccccCC
Confidence 4567788888765321 12345677889999999999999999999999998 764
Q ss_pred -ceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCccccc--cc--C
Q psy16304 227 -TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELT--SA--T 301 (537)
Q Consensus 227 -t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~--~~--~ 301 (537)
+.| +|.++| ..+...+. . ...++..+++++|++.++.. +. .+ ++..... .. .
T Consensus 76 ~~~G----~I~~~g-~~i~~~~~----~-~~~~~~~i~~v~q~~~~~~~-tv-----~e-------nl~~~~~~~~~~~~ 132 (267)
T PRK14235 76 RVTG----KITLDG-EDIYDPRL----D-VVELRARVGMVFQKPNPFPK-SI-----YE-------NVAYGPRIHGLARS 132 (267)
T ss_pred CCce----EEEECC-EECccccc----c-hHHHhhceEEEecCCCCCCC-cH-----HH-------HHHHHHHhcccccc
Confidence 899 899887 44321110 0 11234678999999775542 11 11 0000000 00 0
Q ss_pred cCCccccCCccEEEeccCcc---CccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH-----HH
Q psy16304 302 HLPLVDFRSVPILVLGLDNA---GKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR-----TI 371 (537)
Q Consensus 302 ~l~~~~~~~~~L~llGl~~~---gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~-----~l 371 (537)
...........+..+|+... .....+.+|||||+||+ +++++++. + |++++|| |+|++... ..
T Consensus 133 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv----~laral~~-~--p~lllLDEPt~~LD~~~~~~l~~~ 205 (267)
T PRK14235 133 KAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRL----CIARAIAV-S--PEVILMDEPCSALDPIATAKVEEL 205 (267)
T ss_pred hHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHH----HHHHHHHc-C--CCEEEEeCCCcCCCHHHHHHHHHH
Confidence 00000111222334555321 12334788999999999 99999997 5 8999999 99994332 23
Q ss_pred HHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccch
Q psy16304 372 WKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 372 ~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl 416 (537)
++.+. . +.+++++ +|+.......+ ++++++|+++..+..+++
T Consensus 206 L~~l~-~-~~tiiiv-tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 249 (267)
T PRK14235 206 IDELR-Q-NYTIVIV-THSMQQAARVSQRTAFFHLGNLVEVGDTEKM 249 (267)
T ss_pred HHHHh-c-CCeEEEE-EcCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 33332 2 3466666 88888776543 888999999888776665
No 233
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=2.1e-19 Score=198.29 Aligned_cols=211 Identities=13% Similarity=0.124 Sum_probs=129.1
Q ss_pred cccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeee
Q psy16304 153 MGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNR 232 (537)
Q Consensus 153 i~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~ 232 (537)
+.++++++.|+...+. .+++|.+.+|++++|+|+||||||||+++|+|. ..|+.|
T Consensus 2 l~i~~ls~~~~~~~il------------------~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl----~~p~~G--- 56 (530)
T PRK15064 2 LSTANITMQFGAKPLF------------------ENISVKFGGGNRYGLIGANGCGKSTFMKILGGD----LEPSAG--- 56 (530)
T ss_pred EEEEEEEEEeCCcEeE------------------eCCEEEECCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCc---
Confidence 4567777766543222 345677889999999999999999999999999 899999
Q ss_pred EEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccc--eeeEEe--------------e-c--Ccc---cc
Q psy16304 233 ARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRT--CQVYLI--------------M-C--GVH---QV 290 (537)
Q Consensus 233 ~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~--~il~v~--------------D-s--~~~---~~ 290 (537)
++.+++... +++++|++.++...+. .+.+.. . . ... .+
T Consensus 57 -~i~~~~~~~-------------------i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (530)
T PRK15064 57 -NVSLDPNER-------------------LGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKV 116 (530)
T ss_pred -eEEecCCCE-------------------EEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHH
Confidence 887765222 4445554433221110 000000 0 0 000 00
Q ss_pred cCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH
Q psy16304 291 SGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF 368 (537)
Q Consensus 291 ~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~ 368 (537)
......+.....+....+....+..+|+........+.+|||||+||+ +++++++. + |++++|| |+|++..
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~qrv----~lA~aL~~-~--p~lLlLDEPt~~LD~~ 189 (530)
T PRK15064 117 ADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRV----LLAQALFS-N--PDILLLDEPTNNLDIN 189 (530)
T ss_pred HHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHHHHH----HHHHHHhc-C--CCEEEEcCCCcccCHH
Confidence 000000000111111112233455677764333345889999999999 99999996 5 8999999 9999554
Q ss_pred HHHH-HHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEE-EEecccch
Q psy16304 369 RTIW-KQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQV-YLISAKNL 416 (537)
Q Consensus 369 ~~l~-~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii-~~g~nkdl 416 (537)
...| .+++++.+.+|+++ +||.......+ ++++++|+++ ..|...++
T Consensus 190 ~~~~l~~~l~~~~~tiiiv-sHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~ 240 (530)
T PRK15064 190 TIRWLEDVLNERNSTMIII-SHDRHFLNSVCTHMADLDYGELRVYPGNYDEY 240 (530)
T ss_pred HHHHHHHHHHhCCCeEEEE-eCCHHHHHhhcceEEEEeCCEEEEecCCHHHH
Confidence 4434 45555545677777 89998877644 8999999985 44444444
No 234
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=1.6e-19 Score=180.48 Aligned_cols=211 Identities=12% Similarity=0.083 Sum_probs=131.1
Q ss_pred hhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccC----
Q psy16304 151 ILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVP---- 226 (537)
Q Consensus 151 ~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~P---- 226 (537)
+++.++++.+.|+.... -.++++.+.+|++++|+|+||||||||+++|+|. ..|
T Consensus 3 ~~l~~~~l~~~~~~~~~------------------l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~----~~~~~~~ 60 (251)
T PRK14270 3 IKMESKNLNLWYGEKQA------------------LNDINLPIYENKITALIGPSGCGKSTFLRCLNRM----NDLISNV 60 (251)
T ss_pred cEEEEEEeEEEECCeee------------------eeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhc----cCcccCC
Confidence 45667788877653221 2335677889999999999999999999999998 664
Q ss_pred -ceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCc--C
Q psy16304 227 -TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATH--L 303 (537)
Q Consensus 227 -t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~--l 303 (537)
++| +|.++| .++...+ .. ....+..+++++|++.++. .+.. + ++......... .
T Consensus 61 ~~~G----~i~~~g-~~i~~~~---~~--~~~~~~~i~~~~q~~~~~~-~tv~-----e-------nl~~~~~~~~~~~~ 117 (251)
T PRK14270 61 KIEG----EVLLDG-KNIYDKD---VD--VVELRKRVGMVFQKPNPFP-MSIY-----D-------NVAYGPRIHGIKDK 117 (251)
T ss_pred CCcc----EEEECC-Eeccccc---cc--HHHHHhheEEEecCCCcCC-CcHH-----H-------HHHhHHHhcCCCcH
Confidence 789 899887 4442110 00 1122367999999987553 2210 0 00000000000 0
Q ss_pred -CccccCCccEEEeccCc---cCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH--H---HHH
Q psy16304 304 -PLVDFRSVPILVLGLDN---AGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--R---TIW 372 (537)
Q Consensus 304 -~~~~~~~~~L~llGl~~---~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~---~l~ 372 (537)
....+....+..+|+.. ......+..||+||+||+ +++++++. + |+++++| |+|++.. . .++
T Consensus 118 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv----~laral~~-~--p~llllDEP~~~LD~~~~~~l~~~L 190 (251)
T PRK14270 118 KELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRL----CIARTIAV-K--PDVILMDEPTSALDPISTLKIEDLM 190 (251)
T ss_pred HHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHH----HHHHHHhc-C--CCEEEEeCCcccCCHHHHHHHHHHH
Confidence 00001111222344321 112334788999999999 99999996 5 8999999 9999332 2 233
Q ss_pred HHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccch
Q psy16304 373 KQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 373 ~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl 416 (537)
+.+.+ ..+++++ +|+.......+ ++++++|+++..+.+.++
T Consensus 191 ~~~~~--~~tiiiv-sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14270 191 VELKK--EYTIVIV-THNMQQASRVSDYTAFFLMGDLIEFNKTEKI 233 (251)
T ss_pred HHHHh--CCeEEEE-EcCHHHHHHhcCEEEEEECCeEEEeCCHHHH
Confidence 34433 2566666 78888765533 899999999988877665
No 235
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.75 E-value=4e-19 Score=161.55 Aligned_cols=213 Identities=15% Similarity=0.112 Sum_probs=141.5
Q ss_pred cccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeee
Q psy16304 153 MGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNR 232 (537)
Q Consensus 153 i~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~ 232 (537)
+.+.++..+||+.+...|- .+.-..|+.+.|+||+|||||||++.|.-. ..|.+|
T Consensus 3 irv~~in~~yg~~q~lfdi------------------~l~~~~getlvllgpsgagkssllr~lnll----e~p~sg--- 57 (242)
T COG4161 3 IQLNGINCFYGAHQALFDI------------------TLDCPEGETLVLLGPSGAGKSSLLRVLNLL----EMPRSG--- 57 (242)
T ss_pred eEEcccccccccchheeee------------------eecCCCCCEEEEECCCCCchHHHHHHHHHH----hCCCCC---
Confidence 5677888899988766652 244568999999999999999999999988 789999
Q ss_pred EEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC---ccccC
Q psy16304 233 ARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDFR 309 (537)
Q Consensus 233 ~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~~ 309 (537)
+..+.+ -.+.+-.+++.... ...++..|+|||...+++.++. .+++-+.-....++. ...++
T Consensus 58 -~l~ia~-~~fd~s~~~~~k~i-~~lr~~vgmvfqqy~lwphltv------------~enlieap~kv~gl~~~qa~~~a 122 (242)
T COG4161 58 -TLNIAG-NHFDFSKTPSDKAI-RDLRRNVGMVFQQYNLWPHLTV------------QENLIEAPCRVLGLSKDQALARA 122 (242)
T ss_pred -eEEecc-cccccccCccHHHH-HHHHHhhhhhhhhhccCchhHH------------HHHHHhhhHHHhCCCHHHHHHHH
Confidence 888876 34444344443222 3345789999999998887665 122211111111111 11222
Q ss_pred CccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchh-hHH----HHHHHHHhcCCEE
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSE-DFR----TIWKQYLGTVSQT 382 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~-~~~----~l~~~~~~~~~~v 382 (537)
...+..+.+.... +.++-.||||++||+ +++++++. . |+++++| |+.++ ++. .+++++...+-+-
T Consensus 123 ~ellkrlrl~~~a-dr~plhlsggqqqrv----aiaralmm-k--pqvllfdeptaaldpeitaqvv~iikel~~tgitq 194 (242)
T COG4161 123 EKLLKRLRLKPYA-DRYPLHLSGGQQQRV----AIARALMM-E--PQVLLFDEPTAALDPEITAQIVSIIKELAETGITQ 194 (242)
T ss_pred HHHHHHhcccccc-ccCceecccchhhhH----HHHHHHhc-C--CcEEeecCcccccCHHHHHHHHHHHHHHHhcCceE
Confidence 2333344455444 566889999999999 99999996 5 8999999 88883 222 2334443333334
Q ss_pred EEEEeCCCcchhhhhh--hhhhcCCcEEEEecccc
Q psy16304 383 LLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKN 415 (537)
Q Consensus 383 IlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkd 415 (537)
++| +|......... ++.|++|+++..|...-
T Consensus 195 viv--thev~va~k~as~vvyme~g~ive~g~a~~ 227 (242)
T COG4161 195 VIV--THEVEVARKTASRVVYMENGHIVEQGDASC 227 (242)
T ss_pred EEE--EeehhHHHhhhhheEeeecCeeEeecchhh
Confidence 444 56655555444 88999999999887543
No 236
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.75 E-value=3.2e-19 Score=169.31 Aligned_cols=201 Identities=20% Similarity=0.188 Sum_probs=132.4
Q ss_pred cccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcc
Q psy16304 186 PTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTV 265 (537)
Q Consensus 186 ~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v 265 (537)
-..+++.+.+|+++.++|.||||||||++.|+|. ..||+| +|.++| .++.-+.. .. ...+++-|
T Consensus 22 l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~----l~~t~G----~I~Idg-~dVtk~~~---~~----RA~~larV 85 (263)
T COG1101 22 LNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGD----LKPTSG----QILIDG-VDVTKKSV---AK----RANLLARV 85 (263)
T ss_pred HhcCceeecCCceEEEEcCCCccHHHHHHHhhCc----cccCCc----eEEECc-eecccCCH---HH----HhhHHHHH
Confidence 3456788889999999999999999999999999 999999 999997 77665544 11 12678889
Q ss_pred ccCCCCC--CCccceee-EEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccc
Q psy16304 266 SQTPLGR--PDSRTCQV-YLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTV 342 (537)
Q Consensus 266 ~Q~~~l~--~~~~~~il-~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti 342 (537)
||+|..- +.++-.-- ...+ .+.....+...+ -.......+......-+|+.+...+. +.-|||||||.+
T Consensus 86 fQdp~~gt~~~lTieENl~la~-~Rg~~rgl~~~l--n~~~~~~f~~~l~~l~lgLenrL~~~-iglLSGGQRQal---- 157 (263)
T COG1101 86 FQDPLAGTAPELTIEENLALAE-SRGKKRGLSSAL--NERRRSSFRERLARLGLGLENRLSDR-IGLLSGGQRQAL---- 157 (263)
T ss_pred hcchhhCCcccccHHHHHHHHH-hcCcccccchhh--hHHHHHHHHHHHhhcccchhhhhcCh-hhhccchHHHHH----
Confidence 9998621 11111000 0000 000000000000 00000011122233467777776444 899999999999
Q ss_pred ccccceeccCCceEEEEEe--cCch-----hhHHHHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecc
Q psy16304 343 GFNRARVEYGNKYEVFLYD--LGGS-----EDFRTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISA 413 (537)
Q Consensus 343 ~la~all~~~e~p~lllLD--T~Gl-----~~~~~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~n 413 (537)
.+..+.++ + |++++|| |+.+ +...+..+++.++.+.+.+++ +|++..+...- .++++.|+|+.+..-
T Consensus 158 sL~MAtl~-~--pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMV-THnm~~Al~yG~RlImLh~G~IvlDv~g 233 (263)
T COG1101 158 SLLMATLH-P--PKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMV-THNMEDALDYGNRLIMLHSGKIVLDVTG 233 (263)
T ss_pred HHHHHhcC-C--CcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEE-eccHHHHHhhCCeEEEEeCCeEEEEccc
Confidence 77777776 5 8999999 9998 444555678888888777777 78877665544 888999999887654
Q ss_pred c
Q psy16304 414 K 414 (537)
Q Consensus 414 k 414 (537)
.
T Consensus 234 ~ 234 (263)
T COG1101 234 E 234 (263)
T ss_pred c
Confidence 3
No 237
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=1.3e-19 Score=181.09 Aligned_cols=211 Identities=15% Similarity=0.140 Sum_probs=130.1
Q ss_pred hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCc----
Q psy16304 152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPT---- 227 (537)
Q Consensus 152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt---- 227 (537)
++.++++.+.|+.... -.++++.+.+|++++|+|+||+|||||+++|+|. +.|+
T Consensus 4 ~l~~~~l~~~~~~~~~------------------l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~----~~~~~~~~ 61 (252)
T PRK14272 4 LLSAQDVNIYYGDKQA------------------VKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRM----HDLTPGAR 61 (252)
T ss_pred EEEEeeeEEEECCEEe------------------eccceEEEcCCCEEEEECCCCCCHHHHHHHHhcc----CCCCcCCC
Confidence 4567778777653222 2345677889999999999999999999999998 7764
Q ss_pred -eeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccC--cCC
Q psy16304 228 -VGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSAT--HLP 304 (537)
Q Consensus 228 -~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~--~l~ 304 (537)
+| +|.++| .++...+. . ...++..+++++|++.++...+. .+ ++........ ...
T Consensus 62 ~~G----~i~~~g-~~~~~~~~---~--~~~~~~~i~~~~q~~~~~~~~t~-----~e-------nl~~~~~~~~~~~~~ 119 (252)
T PRK14272 62 VTG----RILLDG-QDIYGPRV---D--PVAMRRRVGMVFQKPNPFPTMSV-----FD-------NVVAGLKLAGIRDRD 119 (252)
T ss_pred Cce----eEEECC-EEcccCcc---C--HHHhhceeEEEeccCccCcCCCH-----HH-------HHHHHHHhcCCCCHH
Confidence 79 888887 44321110 0 11233679999999775543222 00 0000000000 000
Q ss_pred -ccccCCccEEEeccCc---cCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH-----HHHH
Q psy16304 305 -LVDFRSVPILVLGLDN---AGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR-----TIWK 373 (537)
Q Consensus 305 -~~~~~~~~L~llGl~~---~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~-----~l~~ 373 (537)
........+..+++.. ......+..|||||+||+ +++++++. + |+++++| |+|++... ..++
T Consensus 120 ~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv----~laral~~-~--p~llllDEP~~~LD~~~~~~l~~~l~ 192 (252)
T PRK14272 120 HLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRL----CIARALAV-E--PEILLMDEPTSALDPASTARIEDLMT 192 (252)
T ss_pred HHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHH----HHHHHHhc-C--CCEEEEeCCCccCCHHHHHHHHHHHH
Confidence 0000001111122110 112344789999999999 99999996 5 8999999 99983332 2233
Q ss_pred HHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEecccch
Q psy16304 374 QYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 374 ~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~nkdl 416 (537)
.+. . +.+++++ +|+....... + ++++++|+++..+.+.++
T Consensus 193 ~~~-~-~~tiii~-sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14272 193 DLK-K-VTTIIIV-THNMHQAARVSDTTSFFLVGDLVEHGPTDQL 234 (252)
T ss_pred HHh-c-CCeEEEE-eCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 332 2 3566666 8888877653 3 899999999988777665
No 238
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.75 E-value=1.9e-19 Score=180.22 Aligned_cols=195 Identities=15% Similarity=0.106 Sum_probs=123.8
Q ss_pred hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304 152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN 231 (537)
Q Consensus 152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t 231 (537)
++.++++.+.|++..+ -..+++.+.+|++++|+|+||||||||+++|+|. ..|++|
T Consensus 4 ~l~~~~l~~~~~~~~v------------------l~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl----~~p~~G-- 59 (251)
T PRK09544 4 LVSLENVSVSFGQRRV------------------LSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGL----VAPDEG-- 59 (251)
T ss_pred EEEEeceEEEECCceE------------------EEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCC----CCCCce--
Confidence 4667888887653221 2234577889999999999999999999999999 999999
Q ss_pred eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCc
Q psy16304 232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSV 311 (537)
Q Consensus 232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~ 311 (537)
+|.+++. ..+++++|++.++......+ .+.+....... ..+...
T Consensus 60 --~i~~~~~-------------------~~i~~v~q~~~~~~~l~~~~--------------~~~~~~~~~~~-~~~~~~ 103 (251)
T PRK09544 60 --VIKRNGK-------------------LRIGYVPQKLYLDTTLPLTV--------------NRFLRLRPGTK-KEDILP 103 (251)
T ss_pred --EEEECCc-------------------cCEEEeccccccccccChhH--------------HHHHhcccccc-HHHHHH
Confidence 7776540 24777787765433211100 00000000000 011112
Q ss_pred cEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH--HHH---HHHHhcCCEEEE
Q psy16304 312 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR--TIW---KQYLGTVSQTLL 384 (537)
Q Consensus 312 ~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~--~l~---~~~~~~~~~vIl 384 (537)
.+..+|+.... ...+..|||||+||+ +++++++. + |+++++| |+|++... .++ ..+.+..+.+++
T Consensus 104 ~l~~~gl~~~~-~~~~~~LSgGq~qrv----~laral~~-~--p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tii 175 (251)
T PRK09544 104 ALKRVQAGHLI-DAPMQKLSGGETQRV----LLARALLN-R--PQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVL 175 (251)
T ss_pred HHHHcCChHHH-hCChhhCCHHHHHHH----HHHHHHhc-C--CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 23355655443 344889999999999 99999996 5 8999999 99994332 222 333333245666
Q ss_pred EEeCCCcchhhhhh--hhhhcCCcEEEEecccch
Q psy16304 385 VSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 385 Vvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl 416 (537)
++ +|+.......+ ++++++ +++..+...++
T Consensus 176 iv-sH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~ 207 (251)
T PRK09544 176 MV-SHDLHLVMAKTDEVLCLNH-HICCSGTPEVV 207 (251)
T ss_pred EE-ecCHHHHHHhCCEEEEECC-ceEeeCCHHHH
Confidence 66 89988775433 777754 67766665554
No 239
>PTZ00243 ABC transporter; Provisional
Probab=99.75 E-value=2.4e-19 Score=217.91 Aligned_cols=200 Identities=13% Similarity=0.055 Sum_probs=134.0
Q ss_pred cccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcc
Q psy16304 186 PTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTV 265 (537)
Q Consensus 186 ~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v 265 (537)
-++++|.+++|++|||||++|||||||+++|.|. +.|+.| +|.++| +++.-++. .. +++.++++
T Consensus 1326 L~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl----~~p~~G----~I~IDG-~di~~i~l---~~----LR~~I~iV 1389 (1560)
T PTZ00243 1326 LRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRM----VEVCGG----EIRVNG-REIGAYGL---RE----LRRQFSMI 1389 (1560)
T ss_pred eecceEEECCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCc----EEEECC-EEcccCCH---HH----HHhcceEE
Confidence 4567888999999999999999999999999999 999999 999997 77665544 33 34889999
Q ss_pred ccCCCCCCC-ccceeeEEeecCcccccCCcccccccCcCCccccCCccE-EEeccCccCccchhhhhcCCCceeeecccc
Q psy16304 266 SQTPLGRPD-SRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPI-LVLGLDNAGKSSIIKRILGEPIISLVPTVG 343 (537)
Q Consensus 266 ~Q~~~l~~~-~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L-~llGl~~~gKs~li~~LSgG~rqrvs~ti~ 343 (537)
+|++.+|.. ..+++-..-+.+.+ ++.+.++..+-.+....-..-+ ..+|.. -..|||||||++ +
T Consensus 1390 pQdp~LF~gTIreNIdp~~~~sde---eI~~Al~~a~l~~~I~~lp~Gldt~vge~-------G~nLSgGQrQrL----a 1455 (1560)
T PTZ00243 1390 PQDPVLFDGTVRQNVDPFLEASSA---EVWAALELVGLRERVASESEGIDSRVLEG-------GSNYSVGQRQLM----C 1455 (1560)
T ss_pred CCCCccccccHHHHhCcccCCCHH---HHHHHHHHCCChHHHhhCcccccccccCC-------cCcCCHHHHHHH----H
Confidence 999998865 22322110001111 1111111110000000000000 022221 235999999999 9
Q ss_pred cccceeccCCceEEEEEe--cCchhhHHH--HHHHHHhc-CCEEEEEEeCCCcchhhhhh-hhhhcCCcEEEEecccchh
Q psy16304 344 FNRARVEYGNKYEVFLYD--LGGSEDFRT--IWKQYLGT-VSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLISAKNLS 417 (537)
Q Consensus 344 la~all~~~e~p~lllLD--T~Gl~~~~~--l~~~~~~~-~~~vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g~nkdl~ 417 (537)
+||+++. ++ +++++|| |++++...+ +.+.+.+. .+.++|++ +|.......++ +++|++|+++..|++.++.
T Consensus 1456 LARALL~-~~-~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~I-AHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl 1532 (1560)
T PTZ00243 1456 MARALLK-KG-SGFILMDEATANIDPALDRQIQATVMSAFSAYTVITI-AHRLHTVAQYDKIIVMDHGAVAEMGSPRELV 1532 (1560)
T ss_pred HHHHHhc-CC-CCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEE-eccHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999997 33 7999999 999844332 22333332 34577777 89999888777 9999999999999999884
Q ss_pred h
Q psy16304 418 N 418 (537)
Q Consensus 418 ~ 418 (537)
.
T Consensus 1533 ~ 1533 (1560)
T PTZ00243 1533 M 1533 (1560)
T ss_pred h
Confidence 3
No 240
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.75 E-value=6.2e-19 Score=166.51 Aligned_cols=147 Identities=21% Similarity=0.259 Sum_probs=104.0
Q ss_pred ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304 187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS 266 (537)
Q Consensus 187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~ 266 (537)
.++++.+.+|++++|+|+||+|||||+++|+|. ..|+.| ++.++| ..+..+. ...+..+++++
T Consensus 17 ~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~----~~~~~G----~i~~~g-~~~~~~~--------~~~~~~i~~~~ 79 (173)
T cd03230 17 DDISLTVEKGEIYGLLGPNGAGKTTLIKIILGL----LKPDSG----EIKVLG-KDIKKEP--------EEVKRRIGYLP 79 (173)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC----CCCCCe----EEEECC-EEcccch--------HhhhccEEEEe
Confidence 345677889999999999999999999999999 899999 899887 4432111 11235688988
Q ss_pred cCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccccccc
Q psy16304 267 QTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNR 346 (537)
Q Consensus 267 Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~ 346 (537)
|++.++...+. .+ ++ .||+||+||+ ++++
T Consensus 80 q~~~~~~~~tv----------------~~------~~-------------------------~LS~G~~qrv----~lar 108 (173)
T cd03230 80 EEPSLYENLTV----------------RE------NL-------------------------KLSGGMKQRL----ALAQ 108 (173)
T ss_pred cCCccccCCcH----------------HH------Hh-------------------------hcCHHHHHHH----HHHH
Confidence 88663322111 00 00 0999999999 9999
Q ss_pred ceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCc
Q psy16304 347 ARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNC 406 (537)
Q Consensus 347 all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ 406 (537)
+++. + |+++++| |++++.. .+.++.+.++ +.+++++ +|+....... + ++++++|+
T Consensus 109 al~~-~--p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tiii~-th~~~~~~~~~d~i~~l~~g~ 172 (173)
T cd03230 109 ALLH-D--PELLILDEPTSGLDPESRREFWELLRELKKE-GKTILLS-SHILEEAERLCDRVAILNNGR 172 (173)
T ss_pred HHHc-C--CCEEEEeCCccCCCHHHHHHHHHHHHHHHHC-CCEEEEE-CCCHHHHHHhCCEEEEEeCCC
Confidence 9996 5 8999999 9999332 2233344333 3567777 8988877643 3 77777775
No 241
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=1.7e-19 Score=180.09 Aligned_cols=196 Identities=12% Similarity=0.082 Sum_probs=121.3
Q ss_pred cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccC--ceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcc
Q psy16304 188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVP--TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTV 265 (537)
Q Consensus 188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~P--t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v 265 (537)
++++.+.+|++++|+|+||||||||+++|+|..- ...| +.| ++.++| ..+..++. . ...++..++++
T Consensus 21 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~-~~~~~~~~G----~i~~~g-~~~~~~~~----~-~~~~~~~i~~v 89 (250)
T PRK14245 21 GISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMND-LIPATRLEG----EIRIDG-RNIYDKGV----Q-VDELRKNVGMV 89 (250)
T ss_pred eeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhc-ccCCCCCce----EEEECC-Eecccccc----c-HHHHhhheEEE
Confidence 4567788999999999999999999999998500 0233 589 999987 54432211 0 12233679999
Q ss_pred ccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC---ccccCCccEEEeccCc---cCccchhhhhcCCCceeee
Q psy16304 266 SQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDFRSVPILVLGLDN---AGKSSIIKRILGEPIISLV 339 (537)
Q Consensus 266 ~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~~~~~L~llGl~~---~gKs~li~~LSgG~rqrvs 339 (537)
+|++.++.. +. .+ ++...+....... ........+..+|+.. ......+..|||||+||+
T Consensus 90 ~q~~~~~~~-tv-----~~-------nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv- 155 (250)
T PRK14245 90 FQRPNPFPK-SI-----FE-------NVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRL- 155 (250)
T ss_pred ecCCccCcc-cH-----HH-------HHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHH-
Confidence 999775531 11 01 0000000000000 0011122233455432 112344789999999999
Q ss_pred cccccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhh-hh-hhhhcCCcEEEE
Q psy16304 340 PTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDR-CQ-VYLMSCNCQVYL 410 (537)
Q Consensus 340 ~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~-~~-i~ll~~G~ii~~ 410 (537)
+++++++. + |+++++| |+|++.. ...++.+ .+ +.+++++ +|+...... ++ ++++++|+++..
T Consensus 156 ---~laral~~-~--p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~-~~tiiiv-tH~~~~~~~~~d~v~~l~~G~~~~~ 226 (250)
T PRK14245 156 ---CIARAMAV-S--PSVLLMDEPASALDPISTAKVEELIHEL-KK-DYTIVIV-THNMQQAARVSDKTAFFYMGEMVEY 226 (250)
T ss_pred ---HHHHHHhc-C--CCEEEEeCCCccCCHHHHHHHHHHHHHH-hc-CCeEEEE-eCCHHHHHhhCCEEEEEECCEEEEE
Confidence 99999996 5 8999999 9999333 2233333 22 3566666 888887754 33 889999999988
Q ss_pred ecccchh
Q psy16304 411 ISAKNLS 417 (537)
Q Consensus 411 g~nkdl~ 417 (537)
+..+++.
T Consensus 227 ~~~~~~~ 233 (250)
T PRK14245 227 DDTKKIF 233 (250)
T ss_pred CCHHHHh
Confidence 8777763
No 242
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=2.4e-19 Score=179.13 Aligned_cols=210 Identities=11% Similarity=0.038 Sum_probs=130.2
Q ss_pred hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCcccc-----C
Q psy16304 152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLV-----P 226 (537)
Q Consensus 152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~-----P 226 (537)
++.++++.+.|+.... -.++++.+.+|++++|+|+||||||||+++|+|. +. |
T Consensus 4 ~l~~~~l~~~~~~~~~------------------l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~~~p~~~ 61 (251)
T PRK14251 4 IISAKDVHLSYGNYEA------------------LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRM----NDDIENIK 61 (251)
T ss_pred eEEEEeeEEEECCeee------------------eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhc----cccccCCC
Confidence 4567788887654222 2234577889999999999999999999999998 75 4
Q ss_pred ceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC--
Q psy16304 227 TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP-- 304 (537)
Q Consensus 227 t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~-- 304 (537)
+.| +|.++| ..+.. . ......++..+++++|++.++.. +. .+ ++...........
T Consensus 62 ~~G----~v~i~g-~~~~~--~---~~~~~~~~~~i~~~~q~~~~~~~-tv-----~e-------nl~~~~~~~~~~~~~ 118 (251)
T PRK14251 62 ITG----EIKFEG-QNIYG--S---KMDLVELRKEVGMVFQQPTPFPF-SV-----YD-------NVAYGLKIAGVKDKE 118 (251)
T ss_pred cce----EEEECC-EEccc--c---cchHHHhhccEEEEecCCccCCC-cH-----HH-------HHHHHHHHcCCCCHH
Confidence 799 898887 43321 1 11112234678999999775531 11 11 0000000000000
Q ss_pred -ccccCCccEEEeccCc---cCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-----HHHHH
Q psy16304 305 -LVDFRSVPILVLGLDN---AGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWK 373 (537)
Q Consensus 305 -~~~~~~~~L~llGl~~---~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~ 373 (537)
........+..+|+.. ......+.+|||||+||+ +++++++. + |+++++| |+|++.. ...++
T Consensus 119 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~----~laral~~-~--p~llllDEP~~~LD~~~~~~l~~~l~ 191 (251)
T PRK14251 119 LIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRI----CIARALAV-R--PKVVLLDEPTSALDPISSSEIEETLM 191 (251)
T ss_pred HHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHH----HHHHHHhc-C--CCEEEecCCCccCCHHHHHHHHHHHH
Confidence 0001111222344421 112344789999999999 99999996 5 8999999 8998332 22333
Q ss_pred HHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEecccch
Q psy16304 374 QYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 374 ~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~nkdl 416 (537)
.+. . ..+++++ +|+....... + ++++++|+++..+..+++
T Consensus 192 ~~~-~-~~tiiii-sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14251 192 ELK-H-QYTFIMV-THNLQQAGRISDQTAFLMNGDLIEAGPTEEM 233 (251)
T ss_pred HHH-c-CCeEEEE-ECCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 432 2 3567777 8998876543 3 889999999988777665
No 243
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.75 E-value=1.4e-19 Score=181.65 Aligned_cols=211 Identities=13% Similarity=0.093 Sum_probs=130.2
Q ss_pred hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccC-----
Q psy16304 152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVP----- 226 (537)
Q Consensus 152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~P----- 226 (537)
++.++++.+.|+.... -.++++.+.+|++++|+|+||||||||+++|+|. ..|
T Consensus 4 ~l~i~~v~~~~~~~~~------------------l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl----~~~~~~~~ 61 (258)
T PRK14241 4 RIDVKDLNIYYGSFHA------------------VEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRM----HEVIPGAR 61 (258)
T ss_pred cEEEeeEEEEECCEee------------------eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcc----CCcccCCC
Confidence 4567778877654322 2234577889999999999999999999999998 763
Q ss_pred ceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC--
Q psy16304 227 TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP-- 304 (537)
Q Consensus 227 t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~-- 304 (537)
++| +|.++| .++...+. . ...++..+++++|++.++...+. .+ ++...........
T Consensus 62 ~~G----~I~~~g-~~~~~~~~----~-~~~~~~~i~~~~q~~~~~~~~tv-----~~-------nl~~~~~~~~~~~~~ 119 (258)
T PRK14241 62 VEG----EVLLDG-EDLYGPGV----D-PVAVRRTIGMVFQRPNPFPTMSI-----RD-------NVVAGLKLNGVRNKK 119 (258)
T ss_pred cce----EEEECC-Eecccccc----C-hHHHhcceEEEccccccCCCCcH-----HH-------HHHHHHHhcCCCCHH
Confidence 799 999887 44321000 0 11234679999998775543222 00 0100000000000
Q ss_pred -ccccCCccEEEeccCc---cCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-----HHHHH
Q psy16304 305 -LVDFRSVPILVLGLDN---AGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWK 373 (537)
Q Consensus 305 -~~~~~~~~L~llGl~~---~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~ 373 (537)
........+..+|+.. ......+.+|||||+||+ +++++++. + |+++++| |+|++.. ..++.
T Consensus 120 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv----~laral~~-~--p~llllDEPt~~LD~~~~~~l~~~l~ 192 (258)
T PRK14241 120 DLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRL----CIARAIAV-E--PDVLLMDEPCSALDPISTLAIEDLIN 192 (258)
T ss_pred HHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHH----HHHHHHhc-C--CCEEEEcCCCccCCHHHHHHHHHHHH
Confidence 0001112223444421 112344789999999999 99999996 5 8999999 9999433 22333
Q ss_pred HHHhcCCEEEEEEeCCCcchhhhh-h-hhhhc------CCcEEEEecccch
Q psy16304 374 QYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMS------CNCQVYLISAKNL 416 (537)
Q Consensus 374 ~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~------~G~ii~~g~nkdl 416 (537)
.+. . +.+++++ +|+....... + +++++ +|+++..+.++++
T Consensus 193 ~~~-~-~~tviiv-sH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~~~~~~~ 240 (258)
T PRK14241 193 ELK-Q-DYTIVIV-THNMQQAARVSDQTAFFNLEATGKPGRLVEIDDTEKI 240 (258)
T ss_pred HHh-c-CCEEEEE-ecCHHHHHHhCCEEEEEecccCCCCceEEecCCHHHH
Confidence 432 2 3566666 8998877543 3 66675 7999888777665
No 244
>KOG0927|consensus
Probab=99.75 E-value=1.1e-19 Score=191.48 Aligned_cols=272 Identities=13% Similarity=0.169 Sum_probs=154.5
Q ss_pred cccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHH-------
Q psy16304 186 PTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIW------- 258 (537)
Q Consensus 186 ~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~------- 258 (537)
-....+.+.+|+++||+|+||+||||+|++|.|. ..|..- .+.+ ...+..-........
T Consensus 91 ~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~----e~P~p~----~~d~------y~ls~e~~ps~~~av~~v~~~~ 156 (614)
T KOG0927|consen 91 IKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGR----EVPIPE----HIDF------YLLSREIEPSEKQAVQAVVMET 156 (614)
T ss_pred eeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcC----CCCCCc----ccch------hhhcccCCCchHHHHHHHhhhh
Confidence 3455677889999999999999999999999998 555433 2111 111110000000000
Q ss_pred ---HhhhhccccCCCCCCCccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCC
Q psy16304 259 ---KQYLGTVSQTPLGRPDSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEP 334 (537)
Q Consensus 259 ---~~~i~~v~Q~~~l~~~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~ 334 (537)
+..+.+...+.. ...| .+.+....+++.+..++.-....+....+..+|.....-.+.+..|||||
T Consensus 157 ~~e~~rle~~~E~l~----------~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGw 226 (614)
T KOG0927|consen 157 DHERKRLEYLAEDLA----------QACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGW 226 (614)
T ss_pred HHHHHHHHHHHHHHH----------hhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchH
Confidence 001111000000 0000 01111222233233332222233344445567766666677789999999
Q ss_pred ceeeecccccccceeccCCceEEEEEe--cCchhhHHHHH-HHHHhcCCE-EEEEEeCCCcchhhhhh--hhhhcCCcEE
Q psy16304 335 IISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRTIW-KQYLGTVSQ-TLLVSHSLSGRPDDRCQ--VYLMSCNCQV 408 (537)
Q Consensus 335 rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~l~-~~~~~~~~~-vIlVvdshd~~~~~~~~--i~ll~~G~ii 408 (537)
++|+ ++|++++. + |++++|| |+|++.....| +.|+.+.+. +++++ +|+.+++..+| ++-++.++.+
T Consensus 227 rmR~----aLAr~Lf~-k--P~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~-sh~QDfln~vCT~Ii~l~~kkl~ 298 (614)
T KOG0927|consen 227 RMRA----ALARALFQ-K--PDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIV-SHSQDFLNGVCTNIIHLDNKKLI 298 (614)
T ss_pred HHHH----HHHHHHhc-C--CCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEE-ecchhhhhhHhhhhheeccccee
Confidence 9999 99999997 5 8999999 99998888888 899988877 45555 99999999888 6667788999
Q ss_pred EEecccchhhhhccchhhhhhhhhhHHhh----ccccccccCCCCCccccccchhhhhccccCcC---------CCCCce
Q psy16304 409 YLISAKNLSNGFKKSERDETNISNFQIKN----SSENLQDNNTSDNHDSKKKQPRKRKKKVAPLN---------TDDETE 475 (537)
Q Consensus 409 ~~g~nkdl~~~~~~~~~~~~~le~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~r~k~~~~l~---------~~~~~~ 475 (537)
.+++|+|.--.- ..+.++.+...+.-.. ..+.+....... .+...+++++.+|..+++. .+....
T Consensus 299 ~y~Gnydqy~~t-r~E~~~~q~K~~~kqqk~i~~~K~~ia~~g~g-~a~~~rka~s~~K~~~km~~~gL~ek~~~~k~l~ 376 (614)
T KOG0927|consen 299 YYEGNYDQYVKT-RSELEENQMKAYEKQQKQIAHMKDLIARFGHG-SAKLGRKAQSKEKTLDKMEADGLTEKVVGEKVLS 376 (614)
T ss_pred eecCCHHHHhhH-HHHHhHHHHHHHHHHHhHHHHhhHHHHhhccc-chhhhHHHhhhhhhHHHHhhccccccccCCceEE
Confidence 999999741100 0111111111110000 001111111111 1222345556555444432 233447
Q ss_pred eecCccccCCCceEEE
Q psy16304 476 LSLPPLRLLGRNVTHT 491 (537)
Q Consensus 476 l~fp~~~~~g~~v~~~ 491 (537)
+.||....+|..|+.+
T Consensus 377 ~~f~~vg~~p~pvi~~ 392 (614)
T KOG0927|consen 377 FRFPEVGKIPPPVIMV 392 (614)
T ss_pred EEcccccCCCCCeEEE
Confidence 8999998888888776
No 245
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.75 E-value=1.9e-19 Score=179.66 Aligned_cols=192 Identities=15% Similarity=0.126 Sum_probs=118.8
Q ss_pred cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCcccc--C---ceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhh
Q psy16304 188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLV--P---TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYL 262 (537)
Q Consensus 188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~--P---t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i 262 (537)
++++.+.+|++++|+|+||||||||+++|+|. .. | +.| +|.++| ..+...+. . ...++..+
T Consensus 21 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~----~~~~~~~~~~G----~i~~~g-~~~~~~~~---~--~~~~~~~i 86 (250)
T PRK14240 21 KINLDIEENQVTALIGPSGCGKSTFLRTLNRM----NDLIPSVKIEG----EVLLDG-QDIYKSDI---D--VNQLRKRV 86 (250)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhcc----ccccCCCCCce----EEEECC-EEcccccc---c--hHHHhccE
Confidence 45677889999999999999999999999997 54 2 689 999987 44421110 0 11233678
Q ss_pred hccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC---ccccCCccEEEeccCc---cCccchhhhhcCCCce
Q psy16304 263 GTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDFRSVPILVLGLDN---AGKSSIIKRILGEPII 336 (537)
Q Consensus 263 ~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~~~~~L~llGl~~---~gKs~li~~LSgG~rq 336 (537)
++++|++.++. .+. .+ ++........... ........+..+|+.. ......+.+|||||+|
T Consensus 87 ~~~~q~~~~~~-~t~-----~~-------ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~q 153 (250)
T PRK14240 87 GMVFQQPNPFP-MSI-----YD-------NVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQ 153 (250)
T ss_pred EEEecCCccCc-ccH-----HH-------HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHH
Confidence 99999976543 211 11 0000000000000 0000111111223211 1123447889999999
Q ss_pred eeecccccccceeccCCceEEEEEe--cCchhhHHH-----HHHHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcE
Q psy16304 337 SLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRT-----IWKQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQ 407 (537)
Q Consensus 337 rvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~-----l~~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~i 407 (537)
|+ +++++++. + |+++++| |+|++.... .+..+ .. +.+++++ +|+....... + ++++++|++
T Consensus 154 rv----~laral~~-~--p~llllDEP~~~LD~~~~~~l~~~l~~~-~~-~~tiii~-sH~~~~~~~~~d~v~~l~~G~i 223 (250)
T PRK14240 154 RL----CIARALAV-E--PEVLLMDEPTSALDPISTLKIEELIQEL-KK-DYTIVIV-THNMQQASRISDKTAFFLNGEI 223 (250)
T ss_pred HH----HHHHHHhc-C--CCEEEEeCCCccCCHHHHHHHHHHHHHH-hc-CCeEEEE-EeCHHHHHhhCCEEEEEECCEE
Confidence 99 99999997 5 8999999 999943322 22333 22 3566666 8888876553 3 889999999
Q ss_pred EEEecccch
Q psy16304 408 VYLISAKNL 416 (537)
Q Consensus 408 i~~g~nkdl 416 (537)
+..+..+++
T Consensus 224 ~~~~~~~~~ 232 (250)
T PRK14240 224 VEFGDTVDL 232 (250)
T ss_pred EEeCCHHHH
Confidence 988776665
No 246
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.75 E-value=3.9e-19 Score=181.83 Aligned_cols=200 Identities=16% Similarity=0.117 Sum_probs=146.9
Q ss_pred ccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhh
Q psy16304 183 VLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYL 262 (537)
Q Consensus 183 ~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i 262 (537)
+.+++.++++..+|+.+||||.+|||||||-..|.+. ..++ | .|.+.| .++...+...... .++.+
T Consensus 300 ~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL----~~s~-G----~I~F~G-~~i~~~~~~~mrp----lR~~m 365 (534)
T COG4172 300 LRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRL----IPSQ-G----EIRFDG-QDIDGLSRKEMRP----LRRRM 365 (534)
T ss_pred eEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhh----cCcC-c----eEEECC-ccccccChhhhhh----hhhhc
Confidence 4577889999999999999999999999999999998 5555 9 888887 5555444432223 34789
Q ss_pred hccccCCC--CCCCccceeeEEeecCcccccCCcccccccC-cC---CccccCCccEEEeccCccCccchhhhhcCCCce
Q psy16304 263 GTVSQTPL--GRPDSRTCQVYLIMCGVHQVSGIPDELTSAT-HL---PLVDFRSVPILVLGLDNAGKSSIIKRILGEPII 336 (537)
Q Consensus 263 ~~v~Q~~~--l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~-~l---~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rq 336 (537)
..|||+|+ +.+.++.+-+ +.+-+...+ .+ +...+....+.-+|++......++++|||||+|
T Consensus 366 QvVFQDPygSLsPRmtV~qI------------I~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQ 433 (534)
T COG4172 366 QVVFQDPYGSLSPRMTVGQI------------IEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQ 433 (534)
T ss_pred eEEEeCCCCCCCcccCHHHH------------hhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhh
Confidence 99999987 3333333111 122221111 11 111122334557899888889999999999999
Q ss_pred eeecccccccceeccCCceEEEEEe--cCchh-----hHHHHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcE
Q psy16304 337 SLVPTVGFNRARVEYGNKYEVFLYD--LGGSE-----DFRTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQ 407 (537)
Q Consensus 337 rvs~ti~la~all~~~e~p~lllLD--T~Gl~-----~~~~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~i 407 (537)
|+ ++|++++. + |.+++|| |+.++ ....+++.+-++.+...+++ +||..-....+ +++|++|++
T Consensus 434 RI----AIARAliL-k--P~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFI-SHDL~VvrAl~~~viVm~~Gki 505 (534)
T COG4172 434 RI----AIARALIL-K--PELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFI-SHDLAVVRALCHRVIVMRDGKI 505 (534)
T ss_pred HH----HHHHHHhc-C--CcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEE-eccHHHHHHhhceEEEEeCCEE
Confidence 99 99999997 5 8999999 88883 33445566666767777777 99999888766 999999999
Q ss_pred EEEecccch
Q psy16304 408 VYLISAKNL 416 (537)
Q Consensus 408 i~~g~nkdl 416 (537)
+..|...++
T Consensus 506 VE~G~~~~i 514 (534)
T COG4172 506 VEQGPTEAV 514 (534)
T ss_pred eeeCCHHHH
Confidence 999988876
No 247
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.75 E-value=1.8e-19 Score=179.49 Aligned_cols=198 Identities=13% Similarity=0.067 Sum_probs=119.0
Q ss_pred cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccc--cCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcc
Q psy16304 188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISL--VPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTV 265 (537)
Q Consensus 188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~--~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v 265 (537)
++++.+.+|++++|+|+||||||||+++|+|. . .|+.| ++.++| ..+..++ . ....+..++++
T Consensus 19 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~~~~~~G----~i~~~g-~~~~~~~-----~-~~~~~~~i~~~ 83 (248)
T PRK09580 19 GLNLEVRPGEVHAIMGPNGSGKSTLSATLAGR----EDYEVTGG----TVEFKG-KDLLELS-----P-EDRAGEGIFMA 83 (248)
T ss_pred cceeEEcCCCEEEEECCCCCCHHHHHHHHcCC----ccCCCCce----EEEECC-CccccCC-----H-HHHhhcceEEE
Confidence 45677889999999999999999999999998 6 48999 888887 3332111 1 11122458889
Q ss_pred ccCCCCCCCccceeeEEeecCcccccCCcc--cccccCcCCccccCCccEEEeccCccCccchhh-hhcCCCceeeeccc
Q psy16304 266 SQTPLGRPDSRTCQVYLIMCGVHQVSGIPD--ELTSATHLPLVDFRSVPILVLGLDNAGKSSIIK-RILGEPIISLVPTV 342 (537)
Q Consensus 266 ~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~--~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~-~LSgG~rqrvs~ti 342 (537)
+|++.+++..+.... .... ...+.. ....+............+..+|++....+..+. .|||||+||+
T Consensus 84 ~q~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv---- 154 (248)
T PRK09580 84 FQYPVEIPGVSNQFF--LQTA---LNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRN---- 154 (248)
T ss_pred ecCchhccchhHHHH--HHHh---hhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHH----
Confidence 998765443221000 0000 000000 000000000011112233345554222233343 7999999999
Q ss_pred ccccceeccCCceEEEEEe--cCchhhHHH--HHH---HHHhcCCEEEEEEeCCCcchhhhh--h-hhhhcCCcEEEEec
Q psy16304 343 GFNRARVEYGNKYEVFLYD--LGGSEDFRT--IWK---QYLGTVSQTLLVSHSLSGRPDDRC--Q-VYLMSCNCQVYLIS 412 (537)
Q Consensus 343 ~la~all~~~e~p~lllLD--T~Gl~~~~~--l~~---~~~~~~~~vIlVvdshd~~~~~~~--~-i~ll~~G~ii~~g~ 412 (537)
+++++++. + |+++++| |+|++.... +.+ .+. ..+.+++++ +|+....... + ++++++|+++..++
T Consensus 155 ~laral~~-~--p~illLDEPt~~LD~~~~~~l~~~l~~l~-~~~~tiii~-sH~~~~~~~~~~d~i~~l~~g~i~~~g~ 229 (248)
T PRK09580 155 DILQMAVL-E--PELCILDESDSGLDIDALKIVADGVNSLR-DGKRSFIIV-THYQRILDYIKPDYVHVLYQGRIVKSGD 229 (248)
T ss_pred HHHHHHHc-C--CCEEEEeCCCccCCHHHHHHHHHHHHHHH-hCCCEEEEE-eCCHHHHHhhhCCEEEEEECCeEEEeCC
Confidence 99999997 5 8999999 999943322 222 332 334566666 8888877653 4 78889999887765
Q ss_pred cc
Q psy16304 413 AK 414 (537)
Q Consensus 413 nk 414 (537)
.+
T Consensus 230 ~~ 231 (248)
T PRK09580 230 FT 231 (248)
T ss_pred HH
Confidence 44
No 248
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.75 E-value=1.8e-19 Score=178.72 Aligned_cols=193 Identities=15% Similarity=0.140 Sum_probs=124.1
Q ss_pred ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304 187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS 266 (537)
Q Consensus 187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~ 266 (537)
.++++.+.+|++++|+|+||||||||+++|+|. +.|+.| ++.++| ..+..++ . .+..+++++
T Consensus 17 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~----~~~~~G----~i~i~g-~~~~~~~-----~----~~~~i~~~~ 78 (237)
T TIGR00968 17 DDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGL----EQPDSG----RIRLNG-QDATRVH-----A----RDRKIGFVF 78 (237)
T ss_pred eeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcC----CCCCce----EEEECC-EEcCcCC-----h----hhcCEEEEe
Confidence 345677889999999999999999999999999 999999 888887 4432111 1 135689999
Q ss_pred cCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccccccc
Q psy16304 267 QTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNR 346 (537)
Q Consensus 267 Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~ 346 (537)
|++.++...+..-.+.+. .. ................+..+|+.... .+.+..||+||+|++ ++++
T Consensus 79 q~~~~~~~~t~~enl~~~---------~~-~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~lS~G~~qrl----~lar 143 (237)
T TIGR00968 79 QHYALFKHLTVRDNIAFG---------LE-IRKHPKAKIKARVEELLELVQLEGLG-DRYPNQLSGGQRQRV----ALAR 143 (237)
T ss_pred cChhhccCCcHHHHHHhH---------HH-hcCCCHHHHHHHHHHHHHHcCCHhHh-hCChhhCCHHHHHHH----HHHH
Confidence 987755432220000000 00 00000000000112223345555433 344789999999999 9999
Q ss_pred ceeccCCceEEEEEe--cCchhhH--HHH---HHHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEecccch
Q psy16304 347 ARVEYGNKYEVFLYD--LGGSEDF--RTI---WKQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 347 all~~~e~p~lllLD--T~Gl~~~--~~l---~~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~nkdl 416 (537)
+++. + |+++++| |+|++.. ..+ +..+.++.+.+++++ +|+......+ + ++++++|+++..+...++
T Consensus 144 al~~-~--p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~-sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 218 (237)
T TIGR00968 144 ALAV-E--PQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFV-THDQEEAMEVADRIVVMSNGKIEQIGSPDEV 218 (237)
T ss_pred HHhc-C--CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHhhcCEEEEEECCEEEEecCHHHH
Confidence 9996 5 8999999 9999322 223 333333324566666 8888876553 3 889999999887776655
No 249
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=3.3e-19 Score=178.00 Aligned_cols=212 Identities=14% Similarity=0.111 Sum_probs=129.7
Q ss_pred hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCcccc-----C
Q psy16304 152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLV-----P 226 (537)
Q Consensus 152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~-----P 226 (537)
++.++++.+.|++... -.++++.+.+|++++|+|+||+|||||+++|+|. .. |
T Consensus 3 ~l~~~~l~~~~~~~~~------------------l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl----~~~~~~~~ 60 (250)
T PRK14262 3 IIEIENFSAYYGEKKA------------------VKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRM----NDHIPGFR 60 (250)
T ss_pred eEEEEeeEEEeCCcee------------------EeeeeEeecCCCEEEEECCCCCCHHHHHHHHhcc----ccCCCCCC
Confidence 4567777776653221 2345677889999999999999999999999998 66 3
Q ss_pred ceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC--
Q psy16304 227 TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP-- 304 (537)
Q Consensus 227 t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~-- 304 (537)
++| ++.++| ..+...+ .....++..+++++|++.++. .+. .+ ++...........
T Consensus 61 ~~G----~i~i~g-~~~~~~~-----~~~~~~~~~i~~~~q~~~~~~-~tv-----~e-------~l~~~~~~~~~~~~~ 117 (250)
T PRK14262 61 VEG----KIYFKG-QDIYDPQ-----LDVTEYRKKVGMVFQKPTPFP-MSI-----YD-------NVAFGPRIHGVKSKH 117 (250)
T ss_pred cce----EEEECC-EEcccch-----hhHHHhhhhEEEEecCCccCc-ccH-----HH-------HHHHHHHHcCCCcHH
Confidence 889 899887 4332111 011123467999999977543 221 01 0000000000000
Q ss_pred -ccccCCccEEEeccCcc---CccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH--HHHHHHH
Q psy16304 305 -LVDFRSVPILVLGLDNA---GKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR--TIWKQYL 376 (537)
Q Consensus 305 -~~~~~~~~L~llGl~~~---gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~--~l~~~~~ 376 (537)
........+..+|+... .....+.+||+||+||+ +++++++. + |+++++| |+|++... .+++.+.
T Consensus 118 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~----~la~al~~-~--p~llllDEP~~~LD~~~~~~l~~~l~ 190 (250)
T PRK14262 118 KLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRL----CIARALAV-E--PEVILLDEPTSALDPIATQRIEKLLE 190 (250)
T ss_pred HHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHH----HHHHHHhC-C--CCEEEEeCCccccCHHHHHHHHHHHH
Confidence 00001111223343211 12344789999999999 99999996 5 8999999 99994332 2223222
Q ss_pred hc-CCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEecccch
Q psy16304 377 GT-VSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 377 ~~-~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~nkdl 416 (537)
+. .+.+++++ +|+.+..... + ++++++|+++..+...++
T Consensus 191 ~~~~~~tili~-sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14262 191 ELSENYTIVIV-THNIGQAIRIADYIAFMYRGELIEYGPTREI 232 (250)
T ss_pred HHhcCcEEEEE-eCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 11 13566666 8888866543 3 889999999988876665
No 250
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.74 E-value=2.2e-19 Score=198.00 Aligned_cols=244 Identities=13% Similarity=0.069 Sum_probs=150.5
Q ss_pred hhhhHHHHHhhhcccccccccccccccCccccccccCCCCCCchhHHHHHHHHHHHHhhhcccccCCCcccCCCCCCCCC
Q psy16304 93 KAEIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAPTFEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDDPA 172 (537)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~~~~~ 172 (537)
..-+.|+..+...+..++....+++++.++++.+.... +..+... .....+.+++++..|++.. .
T Consensus 271 ~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~-~~~~~~~---------~~~~~i~~~~v~f~y~~~~---~-- 335 (529)
T TIGR02857 271 PEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLA-GKAPVTA---------APAPSLEFSGLSVAYPGRR---A-- 335 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccC-CCcCCCC---------CCCCeEEEEEEEEECCCCC---c--
Confidence 34568999999999999999999999988887332111 1100000 0011356777777765321 0
Q ss_pred cchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCc
Q psy16304 173 PTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSE 252 (537)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~ 252 (537)
..-.++++.+++|++++|+|+||+|||||+++|+|. ++|+.| +|.++| .++..++.
T Consensus 336 -----------~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~----~~~~~G----~I~~~g-~~i~~~~~---- 391 (529)
T TIGR02857 336 -----------PALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGF----VDPTEG----SIAVNG-VPLADADA---- 391 (529)
T ss_pred -----------ccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcC----CCCCCc----EEEECC-EehhhCCH----
Confidence 012346688889999999999999999999999999 999999 999987 55544433
Q ss_pred hhhHHHHhhhhccccCCCCCCC-ccceeeEEee-cCcccccCCcccc---cccCcCCccccCCccEEEeccCccCccchh
Q psy16304 253 DFRTIWKQYLGTVSQTPLGRPD-SRTCQVYLIM-CGVHQVSGIPDEL---TSATHLPLVDFRSVPILVLGLDNAGKSSII 327 (537)
Q Consensus 253 ~~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~D-s~~~~~~~l~~~l---~~~~~l~~~~~~~~~L~llGl~~~gKs~li 327 (537)
..+++.+++++|++.++.. ..+++.+... .+.++.....+.. +++..++...+ ..+|.. .
T Consensus 392 ---~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gld-----t~v~e~-------g 456 (529)
T TIGR02857 392 ---DSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLD-----TLIGEG-------G 456 (529)
T ss_pred ---HHHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCccccc-----chhccc-------c
Confidence 2334789999999998765 3333322111 1111110000000 01111110000 012211 3
Q ss_pred hhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH--HHHHHHHHhc-CCEEEEEEeCCCcchhhhhh
Q psy16304 328 KRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIWKQYLGT-VSQTLLVSHSLSGRPDDRCQ 398 (537)
Q Consensus 328 ~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l~~~~~~~-~~~vIlVvdshd~~~~~~~~ 398 (537)
..|||||+||+ ++||+++. + |+++++| |++++.. ..+.+.+.+. .+.+++++ +|+......++
T Consensus 457 ~~LSgGq~qri----~laRal~~-~--~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i-tH~~~~~~~~d 524 (529)
T TIGR02857 457 AGLSGGQAQRL----ALARAFLR-D--APLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLV-THRLALAERAD 524 (529)
T ss_pred ccCCHHHHHHH----HHHHHHhc-C--CCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEE-ecCHHHHHhCC
Confidence 45999999999 99999996 5 8999999 9999433 3333444332 34566677 78876655443
No 251
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.74 E-value=2.2e-19 Score=181.91 Aligned_cols=187 Identities=16% Similarity=0.108 Sum_probs=122.0
Q ss_pred ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304 187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS 266 (537)
Q Consensus 187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~ 266 (537)
.++++.+.+|++++|+|+||+|||||+++|+|. +. +.| +|.++| .++...+ .. .++..+++++
T Consensus 21 ~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl----~~-~~G----~I~i~g-~~i~~~~---~~----~lr~~i~~v~ 83 (275)
T cd03289 21 ENISFSISPGQRVGLLGRTGSGKSTLLSAFLRL----LN-TEG----DIQIDG-VSWNSVP---LQ----KWRKAFGVIP 83 (275)
T ss_pred eceEEEEcCCCEEEEECCCCCCHHHHHHHHhhh----cC-CCc----EEEECC-EEhhhCC---HH----HHhhhEEEEC
Confidence 445678889999999999999999999999999 65 789 999887 4442211 11 2346799999
Q ss_pred cCCCCCCCc-cceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchh-----------hhhcCCC
Q psy16304 267 QTPLGRPDS-RTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSII-----------KRILGEP 334 (537)
Q Consensus 267 Q~~~l~~~~-~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li-----------~~LSgG~ 334 (537)
|++.+++.. .+.+ + ....+.. .+....+..+|+.... ..++ ..||+||
T Consensus 84 q~~~lf~~tv~~nl----~--------------~~~~~~~-~~~~~~l~~~gL~~~~-~~~p~~l~~~~~~~g~~LS~G~ 143 (275)
T cd03289 84 QKVFIFSGTFRKNL----D--------------PYGKWSD-EEIWKVAEEVGLKSVI-EQFPGQLDFVLVDGGCVLSHGH 143 (275)
T ss_pred CCcccchhhHHHHh----h--------------hccCCCH-HHHHHHHHHcCCHHHH-HhCcccccceecCCCCCCCHHH
Confidence 998876531 1111 0 0000000 0000111123333221 1122 2499999
Q ss_pred ceeeecccccccceeccCCceEEEEEe--cCchhhH--HHHHHHHHhc-CCEEEEEEeCCCcchhhhhh-hhhhcCCcEE
Q psy16304 335 IISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIWKQYLGT-VSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQV 408 (537)
Q Consensus 335 rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l~~~~~~~-~~~vIlVvdshd~~~~~~~~-i~ll~~G~ii 408 (537)
+|++ +++++++. + |+++++| |++++.. ..+.+.+.+. .+.+++++ +|+......++ +++|++|+++
T Consensus 144 ~qrl----~LaRall~-~--p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~i-sH~~~~i~~~dri~vl~~G~i~ 215 (275)
T cd03289 144 KQLM----CLARSVLS-K--AKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILS-EHRIEAMLECQRFLVIEENKVR 215 (275)
T ss_pred HHHH----HHHHHHhc-C--CCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEE-ECCHHHHHhCCEEEEecCCeEe
Confidence 9999 99999997 5 8999999 9999433 2222333222 23566666 78887766555 8999999999
Q ss_pred EEecccchhh
Q psy16304 409 YLISAKNLSN 418 (537)
Q Consensus 409 ~~g~nkdl~~ 418 (537)
..+++.++..
T Consensus 216 ~~g~~~~l~~ 225 (275)
T cd03289 216 QYDSIQKLLN 225 (275)
T ss_pred ecCCHHHHhh
Confidence 9999988754
No 252
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.74 E-value=2.5e-19 Score=201.55 Aligned_cols=182 Identities=15% Similarity=0.158 Sum_probs=118.9
Q ss_pred ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304 187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS 266 (537)
Q Consensus 187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~ 266 (537)
.++++.+.+|+++||+|+||||||||+++|+|. ..|+.| +|.++.... +++++
T Consensus 336 ~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~----~~p~~G----~i~~~~~~~-------------------i~y~~ 388 (635)
T PRK11147 336 KDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQ----LQADSG----RIHCGTKLE-------------------VAYFD 388 (635)
T ss_pred cCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCC----CCCCCc----EEEECCCcE-------------------EEEEe
Confidence 345677889999999999999999999999999 999999 777743222 45555
Q ss_pred cCCC-CCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccc
Q psy16304 267 QTPL-GRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN 345 (537)
Q Consensus 267 Q~~~-l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la 345 (537)
|+.. +++..+. .+ ++...................+..+|+........+..|||||++|+ +++
T Consensus 389 q~~~~l~~~~tv-----~e-------~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl----~la 452 (635)
T PRK11147 389 QHRAELDPEKTV-----MD-------NLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRL----LLA 452 (635)
T ss_pred CcccccCCCCCH-----HH-------HHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHH----HHH
Confidence 5432 2221111 00 00000000000000001112233455543223455899999999999 999
Q ss_pred cceeccCCceEEEEEe--cCchhhHH-HHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhc-CCcEEEEecccc
Q psy16304 346 RARVEYGNKYEVFLYD--LGGSEDFR-TIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMS-CNCQVYLISAKN 415 (537)
Q Consensus 346 ~all~~~e~p~lllLD--T~Gl~~~~-~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~-~G~ii~~g~nkd 415 (537)
++++. + |++++|| |+|++... ..+..+++...++|+++ +||+.+...++ +++++ +|++..+.++++
T Consensus 453 ~al~~-~--p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~v-SHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~ 524 (635)
T PRK11147 453 RLFLK-P--SNLLILDEPTNDLDVETLELLEELLDSYQGTVLLV-SHDRQFVDNTVTECWIFEGNGKIGRYVGGYH 524 (635)
T ss_pred HHHhc-C--CCEEEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEE-ECCHHHHHHhcCEEEEEeCCCeEEEccCCHH
Confidence 99996 5 8999999 99994433 33355566556778888 89999887655 88887 799988877774
No 253
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.74 E-value=1.1e-18 Score=159.67 Aligned_cols=184 Identities=16% Similarity=0.149 Sum_probs=129.5
Q ss_pred ccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhc
Q psy16304 185 LPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGT 264 (537)
Q Consensus 185 ~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~ 264 (537)
+..+.||.+.+|++++|.||+|||||||+++++.+ .+||+| ++.+.| .+++-.+ -+.+| ..++|
T Consensus 18 il~~isl~v~~Ge~iaitGPSG~GKStllk~va~L----isp~~G----~l~f~G-e~vs~~~---pea~R----q~VsY 81 (223)
T COG4619 18 ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASL----ISPTSG----TLLFEG-EDVSTLK---PEAYR----QQVSY 81 (223)
T ss_pred eecceeeeecCCceEEEeCCCCccHHHHHHHHHhc----cCCCCc----eEEEcC-ccccccC---hHHHH----HHHHH
Confidence 34566788999999999999999999999999999 999999 999987 5554433 35666 88999
Q ss_pred cccCCCCCCC-ccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccc
Q psy16304 265 VSQTPLGRPD-SRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG 343 (537)
Q Consensus 265 v~Q~~~l~~~-~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~ 343 (537)
+.|.+.+|.+ ..+++++=+- ....-.........+..++++..--++.+..||||++||+ +
T Consensus 82 ~~Q~paLfg~tVeDNlifP~~--------------~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~Qri----A 143 (223)
T COG4619 82 CAQTPALFGDTVEDNLIFPWQ--------------IRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRI----A 143 (223)
T ss_pred HHcCccccccchhhccccchH--------------HhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHH----H
Confidence 9999998866 3333322111 0000000011122344566666666777899999999999 9
Q ss_pred cccceeccCCceEEEEEe--cCch-----hhHHHHHHHHHhcCCEEEEEEeCCCcch-hhhhh-hhhhcCCc
Q psy16304 344 FNRARVEYGNKYEVFLYD--LGGS-----EDFRTIWKQYLGTVSQTLLVSHSLSGRP-DDRCQ-VYLMSCNC 406 (537)
Q Consensus 344 la~all~~~e~p~lllLD--T~Gl-----~~~~~l~~~~~~~~~~vIlVvdshd~~~-~~~~~-i~ll~~G~ 406 (537)
+.+.+.. - |++++|| |+.+ +.+..++-.|.+..+.+++-+ +||.+. ....+ +|-+..|.
T Consensus 144 liR~Lq~-~--P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~Wi-THd~dqa~rha~k~itl~~G~ 211 (223)
T COG4619 144 LIRNLQF-M--PKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWI-THDKDQAIRHADKVITLQPGH 211 (223)
T ss_pred HHHHhhc-C--CceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEE-ecChHHHhhhhheEEEeccCc
Confidence 9888876 4 7999999 8888 445556677777777888888 888765 33333 55554444
No 254
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=4e-19 Score=199.79 Aligned_cols=178 Identities=20% Similarity=0.161 Sum_probs=116.8
Q ss_pred cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304 188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ 267 (537)
Q Consensus 188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q 267 (537)
.+++.+.+|+++||+||||||||||+++|+|. ..|++| +|.++++.. ++|++|
T Consensus 330 ~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~----~~p~~G----~i~~~~~~~-------------------igy~~Q 382 (638)
T PRK10636 330 SIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGE----LAPVSG----EIGLAKGIK-------------------LGYFAQ 382 (638)
T ss_pred cceEEECCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCC----eEEECCCEE-------------------EEEecC
Confidence 45677889999999999999999999999999 899999 887764333 444444
Q ss_pred CCC--CCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccc
Q psy16304 268 TPL--GRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN 345 (537)
Q Consensus 268 ~~~--l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la 345 (537)
... +....+. .+.+...............+..+|+........+..|||||++|+ +++
T Consensus 383 ~~~~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl----~La 442 (638)
T PRK10636 383 HQLEFLRADESP----------------LQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARL----VLA 442 (638)
T ss_pred cchhhCCccchH----------------HHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHH----HHH
Confidence 321 0000000 000000000000011223344566643223455899999999999 999
Q ss_pred cceeccCCceEEEEEe--cCchhhHHH-HHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEE-ecccch
Q psy16304 346 RARVEYGNKYEVFLYD--LGGSEDFRT-IWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYL-ISAKNL 416 (537)
Q Consensus 346 ~all~~~e~p~lllLD--T~Gl~~~~~-l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~-g~nkdl 416 (537)
++++. + |++++|| |+|++.... .+..++....++||++ +||+.+...++ ++++++|+++.. |+..++
T Consensus 443 ~~l~~-~--p~lLlLDEPt~~LD~~~~~~l~~~L~~~~gtvi~v-SHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 515 (638)
T PRK10636 443 LIVWQ-R--PNLLLLDEPTNHLDLDMRQALTEALIDFEGALVVV-SHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDY 515 (638)
T ss_pred HHHhc-C--CCEEEEcCCCCCCCHHHHHHHHHHHHHcCCeEEEE-eCCHHHHHHhCCEEEEEECCEEEEcCCCHHHH
Confidence 99996 5 8999999 999954433 3345555555677777 89999887655 888999998744 443344
No 255
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.74 E-value=1.1e-18 Score=163.33 Aligned_cols=137 Identities=17% Similarity=0.126 Sum_probs=95.9
Q ss_pred ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304 187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS 266 (537)
Q Consensus 187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~ 266 (537)
.++++.+.+|++++|+|+||+|||||+++|+|. ..|+.| ++.++| .++...+ .....+..+++++
T Consensus 17 ~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~----~~~~~G----~v~~~g-~~~~~~~------~~~~~~~~i~~~~ 81 (163)
T cd03216 17 DGVSLSVRRGEVHALLGENGAGKSTLMKILSGL----YKPDSG----EILVDG-KEVSFAS------PRDARRAGIAMVY 81 (163)
T ss_pred eeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCe----EEEECC-EECCcCC------HHHHHhcCeEEEE
Confidence 345677889999999999999999999999999 999999 888876 3321110 0000011122211
Q ss_pred cCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccccccc
Q psy16304 267 QTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNR 346 (537)
Q Consensus 267 Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~ 346 (537)
+||+||+||+ ++++
T Consensus 82 --------------------------------------------------------------qLS~G~~qrl----~lar 95 (163)
T cd03216 82 --------------------------------------------------------------QLSVGERQMV----EIAR 95 (163)
T ss_pred --------------------------------------------------------------ecCHHHHHHH----HHHH
Confidence 1999999999 9999
Q ss_pred ceeccCCceEEEEEe--cCchhhH--HHHH---HHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEE
Q psy16304 347 ARVEYGNKYEVFLYD--LGGSEDF--RTIW---KQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVY 409 (537)
Q Consensus 347 all~~~e~p~lllLD--T~Gl~~~--~~l~---~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~ 409 (537)
+++. + |+++++| |+|++.. ..++ +++.++ +.+++++ +|+....... + ++++++|+++.
T Consensus 96 al~~-~--p~illlDEP~~~LD~~~~~~l~~~l~~~~~~-~~tiii~-sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 96 ALAR-N--ARLLILDEPTAALTPAEVERLFKVIRRLRAQ-GVAVIFI-SHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred HHhc-C--CCEEEEECCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEE-eCCHHHHHHhCCEEEEEECCEEEe
Confidence 9997 5 8999999 8999322 2222 333322 4566666 8988876543 3 88889998753
No 256
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=3.7e-19 Score=177.59 Aligned_cols=210 Identities=15% Similarity=0.102 Sum_probs=128.8
Q ss_pred hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccC-----
Q psy16304 152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVP----- 226 (537)
Q Consensus 152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~P----- 226 (537)
++.++++.+.|+.... -.++++.+.+|++++|+|+||||||||+++|+|. ..|
T Consensus 3 ~l~~~~l~~~~~~~~~------------------l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~~~~~~~ 60 (249)
T PRK14253 3 KFNIENLDLFYGENQA------------------LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRM----NDLIEGVK 60 (249)
T ss_pred eEEEeccEEEECCeee------------------eecceEEecCCCEEEEECCCCCCHHHHHHHHHhh----cccccCCC
Confidence 4567777777653222 2345677889999999999999999999999998 665
Q ss_pred ceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccc--eeeEEeecCcccccCCcccccccCcCC
Q psy16304 227 TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRT--CQVYLIMCGVHQVSGIPDELTSATHLP 304 (537)
Q Consensus 227 t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~--~il~v~Ds~~~~~~~l~~~l~~~~~l~ 304 (537)
++| ++.++| .++.. . ... ..++..+++++|++.++. .+. .+.+... ..... ....
T Consensus 61 ~~G----~v~~~g-~~~~~--~---~~~-~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~-----~~~~~------~~~~ 117 (249)
T PRK14253 61 ITG----KLTMDG-EDIYG--N---IDV-ADLRIKVGMVFQKPNPFP-MSIYENVAYGLR-----AQGIK------DKKV 117 (249)
T ss_pred Cce----EEEECC-EEccc--c---cch-HHHHhheeEEecCCCcCc-ccHHHHHHhHHH-----hcCCC------chHH
Confidence 589 888887 43321 0 011 123467999999987554 221 0000000 00000 0000
Q ss_pred ccccCCccEEEeccCc---cCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH-----HHHHH
Q psy16304 305 LVDFRSVPILVLGLDN---AGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR-----TIWKQ 374 (537)
Q Consensus 305 ~~~~~~~~L~llGl~~---~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~-----~l~~~ 374 (537)
........+..+|+.. ......+.+|||||+||+ +++++++. + |+++++| |+|++... ..+..
T Consensus 118 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv----~laral~~-~--p~llllDEP~~~LD~~~~~~l~~~l~~ 190 (249)
T PRK14253 118 LDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRL----CIARTIAM-E--PDVILMDEPTSALDPIATHKIEELMEE 190 (249)
T ss_pred HHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHH----HHHHHHHc-C--CCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 0000011111233221 112334778999999999 99999996 5 8999999 99993332 23333
Q ss_pred HHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEecccch
Q psy16304 375 YLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 375 ~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~nkdl 416 (537)
+.+ ..+++++ +|+....... + ++++++|++...+.++++
T Consensus 191 ~~~--~~tii~~-sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (249)
T PRK14253 191 LKK--NYTIVIV-THSMQQARRISDRTAFFLMGELVEHDDTQVI 231 (249)
T ss_pred Hhc--CCeEEEE-ecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 322 3566666 8888876653 3 899999999987776655
No 257
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.74 E-value=3.2e-19 Score=190.40 Aligned_cols=214 Identities=14% Similarity=0.073 Sum_probs=147.9
Q ss_pred hhhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304 150 GILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG 229 (537)
Q Consensus 150 ~~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G 229 (537)
..++.+++++|.||.-....+ ++|.+.+|++.+|+|.||||||||+|+|+|. +.|++|
T Consensus 6 ~~ll~~~~i~K~FggV~AL~~------------------v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv----~~p~~G 63 (500)
T COG1129 6 PPLLELRGISKSFGGVKALDG------------------VSLTVRPGEVHALLGENGAGKSTLMKILSGV----YPPDSG 63 (500)
T ss_pred cceeeeecceEEcCCceeecc------------------ceeEEeCceEEEEecCCCCCHHHHHHHHhCc----ccCCCc
Confidence 346778999999887665554 4577889999999999999999999999999 999999
Q ss_pred eeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccC
Q psy16304 230 FNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFR 309 (537)
Q Consensus 230 ~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~ 309 (537)
+|.++| ..+...+. +......+..|+|+..+.++++.+--+... ......+..++.-....++
T Consensus 64 ----~I~~~G-~~~~~~sp------~~A~~~GI~~V~QEl~L~p~LsVaeNifLg------re~~~~~g~id~~~m~~~A 126 (500)
T COG1129 64 ----EILIDG-KPVAFSSP------RDALAAGIATVHQELSLVPNLSVAENIFLG------REPTRRFGLIDRKAMRRRA 126 (500)
T ss_pred ----eEEECC-EEccCCCH------HHHHhCCcEEEeechhccCCccHHHHhhcc------cccccCCCccCHHHHHHHH
Confidence 999997 55554332 334457899999999988876652111111 0000001111111112233
Q ss_pred CccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCch-----hhHHHHHHHHHhcCCEE
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGS-----EDFRTIWKQYLGTVSQT 382 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl-----~~~~~l~~~~~~~~~~v 382 (537)
...+..+|+... -+..+.+||.|++|.| ++|+++.. + +++++|| |+.+ +....+.+.+.+++ ..
T Consensus 127 ~~~l~~lg~~~~-~~~~v~~LsiaqrQ~V----eIArAl~~-~--arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~G-v~ 197 (500)
T COG1129 127 RELLARLGLDID-PDTLVGDLSIAQRQMV----EIARALSF-D--ARVLILDEPTAALTVKETERLFDLIRRLKAQG-VA 197 (500)
T ss_pred HHHHHHcCCCCC-hhhhhhhCCHHHHHHH----HHHHHHhc-C--CCEEEEcCCcccCCHHHHHHHHHHHHHHHhCC-CE
Confidence 444555666433 4666999999999999 99999997 5 7999999 8888 22233335554444 34
Q ss_pred EEEEeCCCcchhhhhh--hhhhcCCcEEEEec
Q psy16304 383 LLVSHSLSGRPDDRCQ--VYLMSCNCQVYLIS 412 (537)
Q Consensus 383 IlVvdshd~~~~~~~~--i~ll~~G~ii~~g~ 412 (537)
++.+ ||.+++...++ +.+|.+|+.+....
T Consensus 198 ii~I-SHrl~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 198 IIYI-SHRLDEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred EEEE-cCcHHHHHHhcCEEEEEeCCEEeeecc
Confidence 4444 67877776655 99999999888766
No 258
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.74 E-value=8.2e-19 Score=192.31 Aligned_cols=204 Identities=14% Similarity=0.050 Sum_probs=129.6
Q ss_pred ccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhc
Q psy16304 185 LPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGT 264 (537)
Q Consensus 185 ~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~ 264 (537)
+..++++.+.+|++++|+||||||||||+++|+|. ..|++| +|.++| .++... . .....+..+++
T Consensus 268 ~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~----~~p~~G----~i~~~g-~~~~~~-----~-~~~~~~~~i~~ 332 (501)
T PRK11288 268 LREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGA----TRRTAG----QVYLDG-KPIDIR-----S-PRDAIRAGIML 332 (501)
T ss_pred cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCC----CcCCCc----eEEECC-EECCCC-----C-HHHHHhCCCEE
Confidence 34677889999999999999999999999999999 899999 888876 333111 1 11223457899
Q ss_pred cccCCC---CCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecc
Q psy16304 265 VSQTPL---GRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPT 341 (537)
Q Consensus 265 v~Q~~~---l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~t 341 (537)
++|++. ++...+..-.+.+.. .... ....+ +.............+..+|+........+.+|||||+||+
T Consensus 333 ~~q~~~~~~~~~~~tv~e~l~~~~-~~~~--~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl--- 405 (501)
T PRK11288 333 CPEDRKAEGIIPVHSVADNINISA-RRHH--LRAGC-LINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKA--- 405 (501)
T ss_pred cCcCHhhCCCcCCCCHHHHhcccc-chhh--ccccc-ccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHH---
Confidence 999863 333222100000000 0000 00000 0000000011223444677742223555899999999999
Q ss_pred cccccceeccCCceEEEEEe--cCchhh--H---HHHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEec
Q psy16304 342 VGFNRARVEYGNKYEVFLYD--LGGSED--F---RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLIS 412 (537)
Q Consensus 342 i~la~all~~~e~p~lllLD--T~Gl~~--~---~~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~ 412 (537)
.++++++. + |++++|| |+|++. . ...+..+.+ .+.+++++ +||+.+....+ ++++++|+++..+.
T Consensus 406 -~la~al~~-~--p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviiv-sHd~~~~~~~~d~i~~l~~g~i~~~~~ 479 (501)
T PRK11288 406 -ILGRWLSE-D--MKVILLDEPTRGIDVGAKHEIYNVIYELAA-QGVAVLFV-SSDLPEVLGVADRIVVMREGRIAGELA 479 (501)
T ss_pred -HHHHHHcc-C--CCEEEEcCCCCCCCHhHHHHHHHHHHHHHh-CCCEEEEE-CCCHHHHHhhCCEEEEEECCEEEEEEc
Confidence 99999996 5 8999999 999932 2 223334433 35577777 99999887654 88999999998887
Q ss_pred ccch
Q psy16304 413 AKNL 416 (537)
Q Consensus 413 nkdl 416 (537)
.++.
T Consensus 480 ~~~~ 483 (501)
T PRK11288 480 REQA 483 (501)
T ss_pred cccC
Confidence 6644
No 259
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.74 E-value=1.2e-18 Score=190.92 Aligned_cols=197 Identities=13% Similarity=0.035 Sum_probs=125.8
Q ss_pred cccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccC-ceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhc
Q psy16304 186 PTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVP-TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGT 264 (537)
Q Consensus 186 ~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~P-t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~ 264 (537)
-.+++|.+.+|++++|+|+||||||||+++|+|. ..| ++| +|.++| .++. .... ....+..+++
T Consensus 276 l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~----~~p~~~G----~i~~~g-~~~~-----~~~~-~~~~~~~i~~ 340 (500)
T TIGR02633 276 VDDVSFSLRRGEILGVAGLVGAGRTELVQALFGA----YPGKFEG----NVFING-KPVD-----IRNP-AQAIRAGIAM 340 (500)
T ss_pred cccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCC----CCCCCCe----EEEECC-EECC-----CCCH-HHHHhCCCEE
Confidence 4467788999999999999999999999999999 885 899 888886 4331 1111 1123357899
Q ss_pred cccCC---CCCCCccceeeEEeecCcccccCCcccccccCcCC---ccccCCccEEEeccCccCccchhhhhcCCCceee
Q psy16304 265 VSQTP---LGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISL 338 (537)
Q Consensus 265 v~Q~~---~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrv 338 (537)
++|++ .+++..+..-.+.+. ....+....... ........+..+|+........+.+|||||+||+
T Consensus 341 v~q~~~~~~l~~~~tv~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv 412 (500)
T TIGR02633 341 VPEDRKRHGIVPILGVGKNITLS--------VLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKA 412 (500)
T ss_pred cCcchhhCCcCCCCCHHHHhcch--------hhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHH
Confidence 99995 344332210000000 000000000000 0011223344667753223455899999999999
Q ss_pred ecccccccceeccCCceEEEEEe--cCchhhHH-----HHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEE
Q psy16304 339 VPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR-----TIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVY 409 (537)
Q Consensus 339 s~ti~la~all~~~e~p~lllLD--T~Gl~~~~-----~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~ 409 (537)
+++++++. + |++++|| |+|++... .++..+.+. +.+++++ +||..+....+ ++++++|+++.
T Consensus 413 ----~la~al~~-~--p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiv-sHd~~~~~~~~d~v~~l~~G~i~~ 483 (500)
T TIGR02633 413 ----VLAKMLLT-N--PRVLILDEPTRGVDVGAKYEIYKLINQLAQE-GVAIIVV-SSELAEVLGLSDRVLVIGEGKLKG 483 (500)
T ss_pred ----HHHHHHhh-C--CCEEEEcCCCCCcCHhHHHHHHHHHHHHHhC-CCEEEEE-CCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999996 5 8999999 99993332 233444333 5677777 99998887644 88899999887
Q ss_pred Eeccc
Q psy16304 410 LISAK 414 (537)
Q Consensus 410 ~g~nk 414 (537)
.....
T Consensus 484 ~~~~~ 488 (500)
T TIGR02633 484 DFVNH 488 (500)
T ss_pred EEccc
Confidence 66443
No 260
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.74 E-value=6.3e-19 Score=170.26 Aligned_cols=169 Identities=14% Similarity=0.103 Sum_probs=108.7
Q ss_pred cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304 188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ 267 (537)
Q Consensus 188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q 267 (537)
++++.+.+|++++|+|+||+|||||+++|+|. ..|+.| ++.++| ..+.. .....+..+++++|
T Consensus 19 ~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~----~~~~~G----~v~~~g-~~~~~--------~~~~~~~~i~~~~q 81 (200)
T PRK13540 19 QISFHLPAGGLLHLKGSNGAGKTTLLKLIAGL----LNPEKG----EILFER-QSIKK--------DLCTYQKQLCFVGH 81 (200)
T ss_pred eeeEEECCCCEEEEECCCCCCHHHHHHHHhcC----CCCCCe----eEEECC-Ccccc--------CHHHHHhheEEecc
Confidence 45677889999999999999999999999999 999999 898887 33321 01223367899999
Q ss_pred CCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccc
Q psy16304 268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA 347 (537)
Q Consensus 268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~a 347 (537)
++.+++..+.. + ++..... .. .........+..+|+.... ...+..||+||+||+ +++++
T Consensus 82 ~~~~~~~~tv~-----~-------~~~~~~~-~~--~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~~rv----~lara 141 (200)
T PRK13540 82 RSGINPYLTLR-----E-------NCLYDIH-FS--PGAVGITELCRLFSLEHLI-DYPCGLLSSGQKRQV----ALLRL 141 (200)
T ss_pred ccccCcCCCHH-----H-------HHHHHHh-cC--cchHHHHHHHHHcCCchhh-hCChhhcCHHHHHHH----HHHHH
Confidence 87654332220 0 0000000 00 0001112233344554332 344788999999999 99999
Q ss_pred eeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhhh
Q psy16304 348 RVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ 398 (537)
Q Consensus 348 ll~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~~ 398 (537)
++. + |+++++| |+|++.. ...+..+.+ .+.+++++ +|+....+.++
T Consensus 142 l~~-~--p~~lilDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~-sh~~~~~~~~d 194 (200)
T PRK13540 142 WMS-K--AKLWLLDEPLVALDELSLLTIITKIQEHRA-KGGAVLLT-SHQDLPLNKAD 194 (200)
T ss_pred Hhc-C--CCEEEEeCCCcccCHHHHHHHHHHHHHHHH-cCCEEEEE-eCCchhccccc
Confidence 997 5 8999999 9998332 222233322 34566666 88888777654
No 261
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.74 E-value=7.3e-19 Score=164.52 Aligned_cols=184 Identities=18% Similarity=0.231 Sum_probs=122.6
Q ss_pred ccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhc
Q psy16304 185 LPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGT 264 (537)
Q Consensus 185 ~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~ 264 (537)
+...+++.+.+|+.++++||+|||||||+|+++|. ..|..| .+.+++ ..+ .-+|. .-|.
T Consensus 20 ~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf----~~P~~G----~i~l~~-r~i---~gPga---------ergv 78 (259)
T COG4525 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGF----VTPSRG----SIQLNG-RRI---EGPGA---------ERGV 78 (259)
T ss_pred hhhccceeecCCCEEEEEcCCCccHHHHHHHHhcC----cCcccc----eEEECC-Eec---cCCCc---------ccee
Confidence 34556788999999999999999999999999999 999999 888887 443 22333 2488
Q ss_pred cccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCcc---ccCCccEEEeccCccCccchhhhhcCCCceeeecc
Q psy16304 265 VSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLV---DFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPT 341 (537)
Q Consensus 265 v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~---~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~t 341 (537)
|||+..+++.++. .+++..-+.. .++... ..+...+..+|+.+.. .+++-+|||||+||+
T Consensus 79 VFQ~~~LlPWl~~------------~dNvafgL~l-~Gi~k~~R~~~a~q~l~~VgL~~~~-~~~i~qLSGGmrQRv--- 141 (259)
T COG4525 79 VFQNEALLPWLNV------------IDNVAFGLQL-RGIEKAQRREIAHQMLALVGLEGAE-HKYIWQLSGGMRQRV--- 141 (259)
T ss_pred EeccCccchhhHH------------HHHHHHHHHh-cCCCHHHHHHHHHHHHHHhCccccc-ccceEeecchHHHHH---
Confidence 9999998776554 2222222211 112111 1223456688999888 556999999999999
Q ss_pred cccccceeccCCceEEEEEe--cCchhhH-----HHHH-HHHHhcCCEEEEEEeCCCcchhh--hhhhhhhc--CCcEEE
Q psy16304 342 VGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIW-KQYLGTVSQTLLVSHSLSGRPDD--RCQVYLMS--CNCQVY 409 (537)
Q Consensus 342 i~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~-~~~~~~~~~vIlVvdshd~~~~~--~~~i~ll~--~G~ii~ 409 (537)
++|+++.. + |++++|| .+.++.. ..++ +.+...++.+++++ ||.+++. ..+.+++. .|+++.
T Consensus 142 -GiARALa~-e--P~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliT--H~ieEAlflatrLvvlsp~pgRvv~ 215 (259)
T COG4525 142 -GIARALAV-E--PQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLIT--HDIEEALFLATRLVVLSPGPGRVVE 215 (259)
T ss_pred -HHHHHhhc-C--cceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEe--ccHHHHHhhhheeEEecCCCceeeE
Confidence 99999996 5 8999999 4444222 2222 22223455566665 5554443 34466665 456655
Q ss_pred Eec
Q psy16304 410 LIS 412 (537)
Q Consensus 410 ~g~ 412 (537)
.-.
T Consensus 216 ~~~ 218 (259)
T COG4525 216 RLP 218 (259)
T ss_pred ecC
Confidence 433
No 262
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.74 E-value=8.1e-19 Score=192.38 Aligned_cols=203 Identities=14% Similarity=0.053 Sum_probs=128.7
Q ss_pred cccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcc
Q psy16304 186 PTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTV 265 (537)
Q Consensus 186 ~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v 265 (537)
-.+++|.+.+|++++|+|+||||||||+++|+|. ..|+.| +|.++| ..+... . .....+..++++
T Consensus 268 l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~----~~p~~G----~I~~~g-~~i~~~-----~-~~~~~~~~i~~v 332 (501)
T PRK10762 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGA----LPRTSG----YVTLDG-HEVVTR-----S-PQDGLANGIVYI 332 (501)
T ss_pred cccceEEEcCCcEEEEecCCCCCHHHHHHHHhCC----CCCCce----EEEECC-EECCCC-----C-HHHHHHCCCEEe
Confidence 4678889999999999999999999999999999 899999 998887 433211 1 111233569999
Q ss_pred ccCCC---CCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccc
Q psy16304 266 SQTPL---GRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTV 342 (537)
Q Consensus 266 ~Q~~~---l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti 342 (537)
+|++. ++...+..-.+.+. ..............-.........+..+|+........+.+|||||+||+
T Consensus 333 ~q~~~~~~~~~~~tv~e~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv---- 404 (501)
T PRK10762 333 SEDRKRDGLVLGMSVKENMSLT----ALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKV---- 404 (501)
T ss_pred cCccccCCCcCCCcHHHHhhhh----hhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHH----
Confidence 99862 33322210000000 00000000000000000111223445677742223556899999999999
Q ss_pred ccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecc
Q psy16304 343 GFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISA 413 (537)
Q Consensus 343 ~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~n 413 (537)
++|++++. + |++++|| |+|++.. ..++..+.++ +.+++++ +||.......+ ++++++|+++..+..
T Consensus 405 ~lA~al~~-~--p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-g~tviiv-tHd~~~~~~~~d~v~~l~~G~i~~~~~~ 479 (501)
T PRK10762 405 AIARGLMT-R--PKVLILDEPTRGVDVGAKKEIYQLINQFKAE-GLSIILV-SSEMPEVLGMSDRILVMHEGRISGEFTR 479 (501)
T ss_pred HHHHHHhh-C--CCEEEEcCCCCCCCHhHHHHHHHHHHHHHHC-CCEEEEE-cCCHHHHHhhCCEEEEEECCEEEEEecc
Confidence 99999996 5 8999999 9999322 2333444333 4566777 89988776544 889999999887776
Q ss_pred cch
Q psy16304 414 KNL 416 (537)
Q Consensus 414 kdl 416 (537)
+++
T Consensus 480 ~~~ 482 (501)
T PRK10762 480 EQA 482 (501)
T ss_pred ccC
Confidence 554
No 263
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.74 E-value=3.3e-19 Score=176.56 Aligned_cols=190 Identities=16% Similarity=0.128 Sum_probs=124.4
Q ss_pred cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304 188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ 267 (537)
Q Consensus 188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q 267 (537)
++++.+.+|++++|+|+||+|||||+++|+|. ..|+.| ++.++| .++..+ .. .+..+++++|
T Consensus 17 ~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~----~~p~~G----~v~i~g-~~~~~~-----~~----~~~~i~~~~q 78 (235)
T cd03299 17 NVSLEVERGDYFVILGPTGSGKSVLLETIAGF----IKPDSG----KILLNG-KDITNL-----PP----EKRDISYVPQ 78 (235)
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC----cCCCce----EEEECC-EEcCcC-----Ch----hHcCEEEEee
Confidence 45677889999999999999999999999999 999999 898887 433211 11 1357899999
Q ss_pred CCCCCCCccceeeEEeecCcccccCCcccccc--cCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccc
Q psy16304 268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTS--ATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN 345 (537)
Q Consensus 268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~--~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la 345 (537)
++.++...+.. +++...... .............+..+|+.+.. ...+.+||+||+||+ +++
T Consensus 79 ~~~~~~~~t~~------------e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrl----~la 141 (235)
T cd03299 79 NYALFPHMTVY------------KNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLL-NRKPETLSGGEQQRV----AIA 141 (235)
T ss_pred cCccCCCccHH------------HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHH-hcCcccCCHHHHHHH----HHH
Confidence 87655432220 000000000 00000001112233356665443 444889999999999 999
Q ss_pred cceeccCCceEEEEEe--cCchhhH--HHHHH---HHHhcCCEEEEEEeCCCcchhhh-hh-hhhhcCCcEEEEecccch
Q psy16304 346 RARVEYGNKYEVFLYD--LGGSEDF--RTIWK---QYLGTVSQTLLVSHSLSGRPDDR-CQ-VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 346 ~all~~~e~p~lllLD--T~Gl~~~--~~l~~---~~~~~~~~vIlVvdshd~~~~~~-~~-i~ll~~G~ii~~g~nkdl 416 (537)
++++. + |+++++| |+|++.. ..+|+ .+..+.+.+++++ +|+...... ++ ++++++|+++..++.+++
T Consensus 142 ral~~-~--p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~-tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 217 (235)
T cd03299 142 RALVV-N--PKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHV-THDFEEAWALADKVAIMLNGKLIQVGKPEEV 217 (235)
T ss_pred HHHHc-C--CCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE-ecCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 99997 5 8999999 9999332 22333 3333324566666 888887654 33 888899999887776555
No 264
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=2.6e-19 Score=181.69 Aligned_cols=210 Identities=16% Similarity=0.107 Sum_probs=131.8
Q ss_pred hhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccC----
Q psy16304 151 ILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVP---- 226 (537)
Q Consensus 151 ~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~P---- 226 (537)
.++.++++.+.|+...+ -.++++.+.+|++++|+|+||||||||+++|+|. ..|
T Consensus 20 ~~l~i~nl~~~~~~~~i------------------l~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl----~~p~~~~ 77 (276)
T PRK14271 20 PAMAAVNLTLGFAGKTV------------------LDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRM----NDKVSGY 77 (276)
T ss_pred cEEEEeeEEEEECCEEE------------------eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcc----CCcCCCC
Confidence 35677888887764322 2345677889999999999999999999999998 765
Q ss_pred -ceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCc
Q psy16304 227 -TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPL 305 (537)
Q Consensus 227 -t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~ 305 (537)
++| +|.++| ..+.-+. ....++..+++++|++.+++ .+. .+ ++............
T Consensus 78 ~~~G----~i~~~g-~~i~~~~------~~~~~~~~i~~v~q~~~l~~-~tv-----~e-------ni~~~~~~~~~~~~ 133 (276)
T PRK14271 78 RYSG----DVLLGG-RSIFNYR------DVLEFRRRVGMLFQRPNPFP-MSI-----MD-------NVLAGVRAHKLVPR 133 (276)
T ss_pred CCce----EEEECC-EEccccc------hhHHHhhheEEeccCCccCC-ccH-----HH-------HHHHHHHhccCCCH
Confidence 689 888887 4432110 01223467999999987554 221 00 00000000000000
Q ss_pred ---cccCCccEEEeccCccC---ccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH-----HHH
Q psy16304 306 ---VDFRSVPILVLGLDNAG---KSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR-----TIW 372 (537)
Q Consensus 306 ---~~~~~~~L~llGl~~~g---Ks~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~-----~l~ 372 (537)
.......+..+|+.... ....+.+|||||+||+ +++++++. + |+++++| |+|++... ..+
T Consensus 134 ~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl----~LAral~~-~--p~lllLDEPt~~LD~~~~~~l~~~L 206 (276)
T PRK14271 134 KEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLL----CLARTLAV-N--PEVLLLDEPTSALDPTTTEKIEEFI 206 (276)
T ss_pred HHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHH----HHHHHHhc-C--CCEEEEcCCcccCCHHHHHHHHHHH
Confidence 00011112233443210 1233788999999999 99999996 5 8999999 99994332 223
Q ss_pred HHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEecccch
Q psy16304 373 KQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 373 ~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~nkdl 416 (537)
..+.+ ..+++++ +|+....... + ++++++|+++..+...++
T Consensus 207 ~~~~~--~~tiiiv-sH~~~~~~~~~dri~~l~~G~i~~~g~~~~~ 249 (276)
T PRK14271 207 RSLAD--RLTVIIV-THNLAQAARISDRAALFFDGRLVEEGPTEQL 249 (276)
T ss_pred HHHhc--CCEEEEE-eCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 33322 3567777 8888876543 3 889999999888777666
No 265
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.74 E-value=4.1e-19 Score=173.44 Aligned_cols=187 Identities=13% Similarity=0.159 Sum_probs=118.9
Q ss_pred hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304 152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN 231 (537)
Q Consensus 152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t 231 (537)
++.+.++.+.|++... -.++++.+.+|++++|+|+||+|||||+++|+|. +.|+.|
T Consensus 11 ~l~~~~l~~~~~~~~i------------------l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~----~~~~~G-- 66 (214)
T PRK13543 11 LLAAHALAFSRNEEPV------------------FGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGL----LHVESG-- 66 (214)
T ss_pred eEEEeeEEEecCCcee------------------eecceEEECCCCEEEEEcCCCCCHHHHHHHHhCC----CCCCCe--
Confidence 4677888887654322 2345677889999999999999999999999999 999999
Q ss_pred eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCc
Q psy16304 232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSV 311 (537)
Q Consensus 232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~ 311 (537)
++.++| ..+.. ... ...+++++|.+.++...+. .+ ++.... .............
T Consensus 67 --~i~~~g-~~i~~------~~~----~~~i~~~~q~~~~~~~~t~-----~e-------~l~~~~-~~~~~~~~~~~~~ 120 (214)
T PRK13543 67 --QIQIDG-KTATR------GDR----SRFMAYLGHLPGLKADLST-----LE-------NLHFLC-GLHGRRAKQMPGS 120 (214)
T ss_pred --eEEECC-EEccc------hhh----hhceEEeecCcccccCCcH-----HH-------HHHHHH-HhcCCcHHHHHHH
Confidence 899887 44321 111 2468898888665433221 00 000000 0000000111122
Q ss_pred cEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH--HH---HHHHHhcCCEEEE
Q psy16304 312 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR--TI---WKQYLGTVSQTLL 384 (537)
Q Consensus 312 ~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~--~l---~~~~~~~~~~vIl 384 (537)
.+..+|+.... ...+..||+||+||+ +++++++. + |+++++| |++++... .+ +..+.+. +.+++
T Consensus 121 ~l~~~~l~~~~-~~~~~~LS~G~~qrv----~laral~~-~--p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii 191 (214)
T PRK13543 121 ALAIVGLAGYE-DTLVRQLSAGQKKRL----ALARLWLS-P--APLWLLDEPYANLDLEGITLVNRMISAHLRG-GGAAL 191 (214)
T ss_pred HHHHcCChhhc-cCChhhCCHHHHHHH----HHHHHHhc-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEE
Confidence 23345665443 445889999999999 99999996 5 8999999 99993332 22 2333333 45666
Q ss_pred EEeCCCcchhhhhh
Q psy16304 385 VSHSLSGRPDDRCQ 398 (537)
Q Consensus 385 Vvdshd~~~~~~~~ 398 (537)
++ +|+.......+
T Consensus 192 i~-sH~~~~~~~~~ 204 (214)
T PRK13543 192 VT-THGAYAAPPVR 204 (214)
T ss_pred EE-ecChhhhhhhc
Confidence 66 88888776554
No 266
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.74 E-value=4.3e-19 Score=175.73 Aligned_cols=194 Identities=18% Similarity=0.127 Sum_probs=119.5
Q ss_pred cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304 188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ 267 (537)
Q Consensus 188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q 267 (537)
++++.+.+|++++|+|+||||||||+++|+|. ..|++| ++.++| ..+...+. ..++..+++++|
T Consensus 20 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~~~~G----~i~~~g-~~~~~~~~-------~~~~~~i~~~~q 83 (237)
T cd03252 20 NISLRIKPGEVVGIVGRSGSGKSTLTKLIQRF----YVPENG----RVLVDG-HDLALADP-------AWLRRQVGVVLQ 83 (237)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC----cCCCCC----EEEECC-eehHhcCH-------HHHhhcEEEEcC
Confidence 45677889999999999999999999999999 999999 898887 43321111 123367899999
Q ss_pred CCCCCCC-ccceeeEEeecCcccccCCcccc-cccCcCCccccCCccEEEe--ccCccCccchhhhhcCCCceeeecccc
Q psy16304 268 TPLGRPD-SRTCQVYLIMCGVHQVSGIPDEL-TSATHLPLVDFRSVPILVL--GLDNAGKSSIIKRILGEPIISLVPTVG 343 (537)
Q Consensus 268 ~~~l~~~-~~~~il~v~Ds~~~~~~~l~~~l-~~~~~l~~~~~~~~~L~ll--Gl~~~gKs~li~~LSgG~rqrvs~ti~ 343 (537)
++.++.. ..+.+.+ .. .. . ....+ ..... ......+..+ |+.... ...+.+|||||+||+ +
T Consensus 84 ~~~~~~~tv~~nl~~-~~--~~-~--~~~~~~~~~~~----~~~~~~l~~l~~~~~~~~-~~~~~~LSgG~~qrv----~ 148 (237)
T cd03252 84 ENVLFNRSIRDNIAL-AD--PG-M--SMERVIEAAKL----AGAHDFISELPEGYDTIV-GEQGAGLSGGQRQRI----A 148 (237)
T ss_pred CchhccchHHHHhhc-cC--CC-C--CHHHHHHHHHH----cCcHHHHHhCcccccchh-hcCCCcCCHHHHHHH----H
Confidence 9764421 0010000 00 00 0 00000 00000 0000111111 332221 234788999999999 9
Q ss_pred cccceeccCCceEEEEEe--cCchhhH--HHHHHHHHhc-CCEEEEEEeCCCcchhhhhh-hhhhcCCcEEEEecccch
Q psy16304 344 FNRARVEYGNKYEVFLYD--LGGSEDF--RTIWKQYLGT-VSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 344 la~all~~~e~p~lllLD--T~Gl~~~--~~l~~~~~~~-~~~vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g~nkdl 416 (537)
++++++. + |+++++| |+|++.. ..+++.+.+- .+.+++++ +|+......++ ++++++|+++..+...++
T Consensus 149 laral~~-~--p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~-sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 223 (237)
T cd03252 149 IARALIH-N--PRILIFDEATSALDYESEHAIMRNMHDICAGRTVIII-AHRLSTVKNADRIIVMEKGRIVEQGSHDEL 223 (237)
T ss_pred HHHHHhh-C--CCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEE-eCCHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999996 5 8999999 9999332 2222322221 13456666 88888776544 899999999888776555
No 267
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.74 E-value=1.5e-18 Score=164.63 Aligned_cols=152 Identities=18% Similarity=0.263 Sum_probs=106.2
Q ss_pred cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304 188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ 267 (537)
Q Consensus 188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q 267 (537)
++++.+.+|++++|+|+||||||||+++|+|. ..|++| ++.++| ..+. .....++..+++++|
T Consensus 20 ~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~----~~~~~G----~i~~~g-~~~~--------~~~~~~~~~i~~~~q 82 (178)
T cd03247 20 NLSLELKQGEKIALLGRSGSGKSTLLQLLTGD----LKPQQG----EITLDG-VPVS--------DLEKALSSLISVLNQ 82 (178)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhcc----CCCCCC----EEEECC-EEHH--------HHHHHHHhhEEEEcc
Confidence 45677889999999999999999999999999 999999 888887 3221 111223466888888
Q ss_pred CCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccc
Q psy16304 268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA 347 (537)
Q Consensus 268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~a 347 (537)
++.++. .+ +.+ ++ +..||+||+||+ +++++
T Consensus 83 ~~~~~~-~t----------------v~~------~i-----------------------~~~LS~G~~qrv----~lara 112 (178)
T cd03247 83 RPYLFD-TT----------------LRN------NL-----------------------GRRFSGGERQRL----ALARI 112 (178)
T ss_pred CCeeec-cc----------------HHH------hh-----------------------cccCCHHHHHHH----HHHHH
Confidence 765221 00 010 00 456999999999 99999
Q ss_pred eeccCCceEEEEEe--cCchhhH--HHHHHHHHhc-CCEEEEEEeCCCcchhhhhh-hhhhcCCcEEEE
Q psy16304 348 RVEYGNKYEVFLYD--LGGSEDF--RTIWKQYLGT-VSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQVYL 410 (537)
Q Consensus 348 ll~~~e~p~lllLD--T~Gl~~~--~~l~~~~~~~-~~~vIlVvdshd~~~~~~~~-i~ll~~G~ii~~ 410 (537)
++. + |+++++| |+|++.. ..+++.+.+. .+.+++++ +|+......++ ++++++|+++..
T Consensus 113 l~~-~--p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~-sh~~~~~~~~d~~~~l~~g~i~~~ 177 (178)
T cd03247 113 LLQ-D--APIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWI-THHLTGIEHMDKILFLENGKIIMQ 177 (178)
T ss_pred Hhc-C--CCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEE-ecCHHHHHhCCEEEEEECCEEEec
Confidence 996 5 8999999 8898332 2233322221 23556666 78877766544 888889987653
No 268
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.74 E-value=1.9e-18 Score=163.12 Aligned_cols=146 Identities=18% Similarity=0.204 Sum_probs=102.2
Q ss_pred cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304 188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ 267 (537)
Q Consensus 188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q 267 (537)
.+++.+.+|++++|+|+||+|||||+++|+|. ..|+.| ++.++| ..+...+. ..++..+++++|
T Consensus 20 ~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~----~~~~~G----~i~~~g-~~~~~~~~-------~~~~~~i~~~~q 83 (173)
T cd03246 20 NVSFSIEPGESLAIIGPSGSGKSTLARLILGL----LRPTSG----RVRLDG-ADISQWDP-------NELGDHVGYLPQ 83 (173)
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHHhc----cCCCCC----eEEECC-EEcccCCH-------HHHHhheEEECC
Confidence 34577889999999999999999999999999 999999 898887 44322111 122356888888
Q ss_pred CCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccc
Q psy16304 268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA 347 (537)
Q Consensus 268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~a 347 (537)
++.+++. + +.+ ++ ||+||+||+ +++++
T Consensus 84 ~~~~~~~-t----------------v~~------~l--------------------------LS~G~~qrv----~la~a 110 (173)
T cd03246 84 DDELFSG-S----------------IAE------NI--------------------------LSGGQRQRL----GLARA 110 (173)
T ss_pred CCccccC-c----------------HHH------HC--------------------------cCHHHHHHH----HHHHH
Confidence 7653211 0 011 00 999999999 99999
Q ss_pred eeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhhh-hhhhcCCcE
Q psy16304 348 RVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQ 407 (537)
Q Consensus 348 ll~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~~-i~ll~~G~i 407 (537)
++. + |+++++| |+|++.. ...+..+.++ +.+++++ +|+......++ ++++++|++
T Consensus 111 l~~-~--p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~~-sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 111 LYG-N--PRILVLDEPNSHLDVEGERALNQAIAALKAA-GATRIVI-AHRPETLASADRILVLEDGRV 173 (173)
T ss_pred Hhc-C--CCEEEEECCccccCHHHHHHHHHHHHHHHhC-CCEEEEE-eCCHHHHHhCCEEEEEECCCC
Confidence 997 5 8999999 9999333 2233343332 3466666 78877665444 777877753
No 269
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.74 E-value=2.6e-19 Score=198.50 Aligned_cols=209 Identities=15% Similarity=0.127 Sum_probs=132.0
Q ss_pred hhcccccCCCccc-CCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304 151 ILMGIQNVPNFQT-SSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG 229 (537)
Q Consensus 151 ~li~~~~l~k~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G 229 (537)
.++.++++++.|+ ...+. .++++.+.+|++++|+|+||||||||+++|+|. ..|+.|
T Consensus 3 ~~i~~~nls~~~~~~~~il------------------~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~----~~p~~G 60 (552)
T TIGR03719 3 YIYTMNRVSKVVPPKKEIL------------------KDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGV----DKEFNG 60 (552)
T ss_pred EEEEEeeEEEecCCCCeee------------------cCceEEECCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCc
Confidence 3567888888775 32222 235677889999999999999999999999999 999999
Q ss_pred eeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccc--eeeEEeec-----------------Ccc--
Q psy16304 230 FNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRT--CQVYLIMC-----------------GVH-- 288 (537)
Q Consensus 230 ~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~--~il~v~Ds-----------------~~~-- 288 (537)
+|.+++. ..+++++|++.++...+. .+.+.... ...
T Consensus 61 ----~i~~~~~-------------------~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (552)
T TIGR03719 61 ----EARPAPG-------------------IKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADM 117 (552)
T ss_pred ----eEEecCC-------------------CEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhh
Confidence 7766431 236777777654433221 11000000 000
Q ss_pred -----cccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--
Q psy16304 289 -----QVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD-- 361 (537)
Q Consensus 289 -----~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD-- 361 (537)
....+.+.+...+.+....+....+..+|+.. ....+.+|||||++|+ +++++++. + |++++||
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkqrv----~la~al~~-~--p~lLLLDEP 188 (552)
T TIGR03719 118 DALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPP--WDADVTKLSGGERRRV----ALCRLLLS-K--PDMLLLDEP 188 (552)
T ss_pred HHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCc--ccCchhhcCHHHHHHH----HHHHHHhc-C--CCEEEEcCC
Confidence 00000011111111111111222344566643 2445899999999999 99999996 5 8999999
Q ss_pred cCchhhHHHHH-HHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEeccc
Q psy16304 362 LGGSEDFRTIW-KQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAK 414 (537)
Q Consensus 362 T~Gl~~~~~l~-~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nk 414 (537)
|++++.....| .++++...+++|++ +|+.......+ ++++++|+++...++.
T Consensus 189 t~~LD~~~~~~l~~~L~~~~~tvIii-sHd~~~~~~~~d~v~~l~~g~i~~~~g~~ 243 (552)
T TIGR03719 189 TNHLDAESVAWLEQHLQEYPGTVVAV-THDRYFLDNVAGWILELDRGRGIPWEGNY 243 (552)
T ss_pred CCCCChHHHHHHHHHHHhCCCeEEEE-eCCHHHHHhhcCeEEEEECCEEEEecCCH
Confidence 99996555544 55555545677777 89998887654 8889999987554444
No 270
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=4.3e-19 Score=179.36 Aligned_cols=209 Identities=14% Similarity=0.106 Sum_probs=127.8
Q ss_pred hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCcccc-----C
Q psy16304 152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLV-----P 226 (537)
Q Consensus 152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~-----P 226 (537)
++.++++.+.|+.... -.++++.+.+|++++|+|+||||||||+++|+|. +. |
T Consensus 13 ~l~i~nl~~~~~~~~i------------------l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl----~~~~~~~p 70 (269)
T PRK14259 13 IISLQNVTISYGTFEA------------------VKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRM----NDLIEGCS 70 (269)
T ss_pred eEEEEeEEEEECCEEE------------------EcceEEEEcCCCEEEEECCCCCCHHHHHHHHhcc----ccccCCCC
Confidence 5677788777654222 2345677889999999999999999999999998 65 6
Q ss_pred ceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccc--eeeEEeecCcccccCCcccccccCcCC
Q psy16304 227 TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRT--CQVYLIMCGVHQVSGIPDELTSATHLP 304 (537)
Q Consensus 227 t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~--~il~v~Ds~~~~~~~l~~~l~~~~~l~ 304 (537)
+.| ++.++| .++...+. . ...++..+++++|++.++.. +. .+.+... ...... .
T Consensus 71 ~~G----~v~~~g-~~i~~~~~---~--~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~------------~~~~~~-~ 126 (269)
T PRK14259 71 LKG----RVLFDG-TDLYDPRV---D--PVEVRRRIGMVFQQPNPFPK-SIYENIAFGAR------------INGYTG-D 126 (269)
T ss_pred Cce----EEEECC-EEcccccC---C--HHHHhhceEEEccCCccchh-hHHHHHhhhhh------------hcCCcH-H
Confidence 899 888887 44321111 1 11233579999999875542 11 0000000 000000 0
Q ss_pred ccccCCccEEEeccC----ccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH--HHHHHHH
Q psy16304 305 LVDFRSVPILVLGLD----NAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR--TIWKQYL 376 (537)
Q Consensus 305 ~~~~~~~~L~llGl~----~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~--~l~~~~~ 376 (537)
........+..+|+. .. ....+.+||+||+||+ +++++++. + |+++++| |+|++... .+++.+.
T Consensus 127 ~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LS~G~~qrl----~laral~~-~--p~lllLDEPt~gLD~~~~~~l~~~l~ 198 (269)
T PRK14259 127 MDELVERSLRKAAVWDECKDK-LNESGYSLSGGQQQRL----CIARTIAI-E--PEVILMDEPCSALDPISTLKIEETMH 198 (269)
T ss_pred HHHHHHHHHHHhCCcchhhhh-hCCCcccCCHHHHHHH----HHHHHHhc-C--CCEEEEcCCCccCCHHHHHHHHHHHH
Confidence 000011112223321 11 2334788999999999 99999996 5 8999999 99994332 2223222
Q ss_pred --hcCCEEEEEEeCCCcchhhhhh--hhhhcC-----------CcEEEEecccch
Q psy16304 377 --GTVSQTLLVSHSLSGRPDDRCQ--VYLMSC-----------NCQVYLISAKNL 416 (537)
Q Consensus 377 --~~~~~vIlVvdshd~~~~~~~~--i~ll~~-----------G~ii~~g~nkdl 416 (537)
+. +.+++++ +|+.......+ ++++++ |+++..+.++++
T Consensus 199 ~~~~-~~tiiiv-tH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~~~~~~~ 251 (269)
T PRK14259 199 ELKK-NFTIVIV-THNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYLVEFNETKKI 251 (269)
T ss_pred HHhc-CCEEEEE-eCCHHHHHHhcCEEEEEeccccccccccccceEEEeCCHHHH
Confidence 22 3566666 88888776544 777875 557777776665
No 271
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.74 E-value=6.3e-19 Score=174.06 Aligned_cols=186 Identities=16% Similarity=0.132 Sum_probs=136.8
Q ss_pred hhcccccCCCcccCCCC-CCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304 151 ILMGIQNVPNFQTSSVL-SDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG 229 (537)
Q Consensus 151 ~li~~~~l~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G 229 (537)
.++.++++.+.|..... .... .+.+.+.+||.+.+|+++||||.+|+|||||-++|.|+ +.||+|
T Consensus 3 ~ll~v~~l~k~f~~~~~~~~~~----------~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L----~~pt~G 68 (268)
T COG4608 3 PLLEVKNLKKYFPVGKGFGKKR----------YVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGL----EEPTSG 68 (268)
T ss_pred ceEEEeccEEEEecccccCccc----------ceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcC----cCCCCc
Confidence 46788899998865432 2111 15678889999999999999999999999999999999 999999
Q ss_pred eeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccC
Q psy16304 230 FNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFR 309 (537)
Q Consensus 230 ~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~ 309 (537)
+|.+.| .++...+. .... +. +.+
T Consensus 69 ----~i~f~g-~~i~~~~~---~~~~----~~-------------------------------v~e-------------- 91 (268)
T COG4608 69 ----EILFEG-KDITKLSK---EERR----ER-------------------------------VLE-------------- 91 (268)
T ss_pred ----eEEEcC-cchhhcch---hHHH----HH-------------------------------HHH--------------
Confidence 999887 33211110 0000 00 111
Q ss_pred CccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCch-----hhHHHHHHHHHhcCCEE
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGS-----EDFRTIWKQYLGTVSQT 382 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl-----~~~~~l~~~~~~~~~~v 382 (537)
.+..+|+...-..+++++|||||+||+ ++|++++. + |++++.| ++.+ .....++.++.++.+.+
T Consensus 92 --lL~~Vgl~~~~~~ryPhelSGGQrQRi----~IARALal-~--P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt 162 (268)
T COG4608 92 --LLEKVGLPEEFLYRYPHELSGGQRQRI----GIARALAL-N--PKLIVADEPVSALDVSVQAQILNLLKDLQEELGLT 162 (268)
T ss_pred --HHHHhCCCHHHhhcCCcccCchhhhhH----HHHHHHhh-C--CcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCe
Confidence 122445555455677999999999999 99999997 5 8999999 7776 34444556666666677
Q ss_pred EEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchh
Q psy16304 383 LLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLS 417 (537)
Q Consensus 383 IlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~ 417 (537)
.+.+ +||.......+ +.+|..|+++..+..+++.
T Consensus 163 ~lFI-sHDL~vv~~isdri~VMy~G~iVE~g~~~~~~ 198 (268)
T COG4608 163 YLFI-SHDLSVVRYISDRIAVMYLGKIVEIGPTEEVF 198 (268)
T ss_pred EEEE-EEEHHhhhhhcccEEEEecCceeEecCHHHHh
Confidence 7777 89998887765 9999999999999888774
No 272
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.74 E-value=1.4e-18 Score=167.89 Aligned_cols=159 Identities=15% Similarity=0.067 Sum_probs=109.0
Q ss_pred ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccc--cCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhc
Q psy16304 187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISL--VPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGT 264 (537)
Q Consensus 187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~--~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~ 264 (537)
.++++.+.+|++++|+|+||||||||+++|+|. . .|+.| ++.++| .++..++. ....+..+++
T Consensus 17 ~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~----~~~~p~~G----~i~~~g-~~~~~~~~------~~~~~~~i~~ 81 (200)
T cd03217 17 KGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGH----PKYEVTEG----EILFKG-EDITDLPP------EERARLGIFL 81 (200)
T ss_pred eccceEECCCcEEEEECCCCCCHHHHHHHHhCC----CcCCCCcc----EEEECC-EECCcCCH------HHHhhCcEEE
Confidence 345677889999999999999999999999998 5 68999 899887 43321111 1111245888
Q ss_pred cccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccccc
Q psy16304 265 VSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF 344 (537)
Q Consensus 265 v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~l 344 (537)
++|++.+++.... .+.+ ......||+||+||+ ++
T Consensus 82 v~q~~~~~~~~~~----------------~~~l--------------------------~~~~~~LS~G~~qrv----~l 115 (200)
T cd03217 82 AFQYPPEIPGVKN----------------ADFL--------------------------RYVNEGFSGGEKKRN----EI 115 (200)
T ss_pred eecChhhccCccH----------------HHHH--------------------------hhccccCCHHHHHHH----HH
Confidence 8888663321110 0000 111246999999999 99
Q ss_pred ccceeccCCceEEEEEe--cCchhhH--HHHH---HHHHhcCCEEEEEEeCCCcchhhh--hh-hhhhcCCcEEEEe
Q psy16304 345 NRARVEYGNKYEVFLYD--LGGSEDF--RTIW---KQYLGTVSQTLLVSHSLSGRPDDR--CQ-VYLMSCNCQVYLI 411 (537)
Q Consensus 345 a~all~~~e~p~lllLD--T~Gl~~~--~~l~---~~~~~~~~~vIlVvdshd~~~~~~--~~-i~ll~~G~ii~~g 411 (537)
+++++. + |+++++| |+|++.. ..++ ..+.+. ..+++++ +|+...... ++ ++++++|++...+
T Consensus 116 aral~~-~--p~illlDEPt~~LD~~~~~~l~~~L~~~~~~-~~tiii~-sh~~~~~~~~~~d~i~~l~~G~i~~~~ 187 (200)
T cd03217 116 LQLLLL-E--PDLAILDEPDSGLDIDALRLVAEVINKLREE-GKSVLII-THYQRLLDYIKPDRVHVLYDGRIVKSG 187 (200)
T ss_pred HHHHhc-C--CCEEEEeCCCccCCHHHHHHHHHHHHHHHHC-CCEEEEE-ecCHHHHHHhhCCEEEEEECCEEEEEc
Confidence 999996 5 8999999 9998322 2233 343332 3456666 788877763 34 8899999988776
No 273
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.74 E-value=6.8e-19 Score=175.82 Aligned_cols=193 Identities=13% Similarity=0.099 Sum_probs=121.2
Q ss_pred ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304 187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS 266 (537)
Q Consensus 187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~ 266 (537)
.+++|.+.+|++++|+|+||||||||+++|+|. .. ..| ++.++| ..+..++. ..+...+++++
T Consensus 13 ~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl----~~-~~G----~i~~~g-~~i~~~~~-------~~~~~~i~~v~ 75 (248)
T PRK03695 13 GPLSAEVRAGEILHLVGPNGAGKSTLLARMAGL----LP-GSG----SIQFAG-QPLEAWSA-------AELARHRAYLS 75 (248)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHcCC----CC-CCe----EEEECC-EecCcCCH-------HHHhhheEEec
Confidence 345677889999999999999999999999998 64 589 898887 43321111 11235589999
Q ss_pred cCCCCCCCccceeeEEeecCcccccCCcccccc-cCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccc
Q psy16304 267 QTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTS-ATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN 345 (537)
Q Consensus 267 Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~-~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la 345 (537)
|++..+...+. .+ ++...... ...-....+....+..+|+.... ...+..||+||+||+ +++
T Consensus 76 q~~~~~~~~tv-----~~-------nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv----~la 138 (248)
T PRK03695 76 QQQTPPFAMPV-----FQ-------YLTLHQPDKTRTEAVASALNEVAEALGLDDKL-GRSVNQLSGGEWQRV----RLA 138 (248)
T ss_pred ccCccCCCccH-----HH-------HHHhcCccCCCcHHHHHHHHHHHHHcCCHhHh-cCCcccCCHHHHHHH----HHH
Confidence 98754433221 00 00000000 00000001112233456665433 445889999999999 999
Q ss_pred cceecc-----CCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEe
Q psy16304 346 RARVEY-----GNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLI 411 (537)
Q Consensus 346 ~all~~-----~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g 411 (537)
++++.. ++ |+++++| |+|++.. ..++..+.++ +.+++++ +|+.......+ ++++++|+++..+
T Consensus 139 ~al~~~~~~~~p~-p~llllDEPt~~LD~~~~~~l~~~L~~~~~~-~~tvi~~-sH~~~~~~~~~d~i~~l~~G~i~~~g 215 (248)
T PRK03695 139 AVVLQVWPDINPA-GQLLLLDEPMNSLDVAQQAALDRLLSELCQQ-GIAVVMS-SHDLNHTLRHADRVWLLKQGKLLASG 215 (248)
T ss_pred HHHhccccccCCC-CCEEEEcCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEE-ecCHHHHHHhCCEEEEEECCEEEEEC
Confidence 999851 13 7999999 9999333 2233343333 4566666 88887665443 8999999998877
Q ss_pred cccch
Q psy16304 412 SAKNL 416 (537)
Q Consensus 412 ~nkdl 416 (537)
..+++
T Consensus 216 ~~~~~ 220 (248)
T PRK03695 216 RRDEV 220 (248)
T ss_pred CHHHH
Confidence 66554
No 274
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=3e-19 Score=178.48 Aligned_cols=193 Identities=14% Similarity=0.149 Sum_probs=121.9
Q ss_pred ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCcccc-----CceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhh
Q psy16304 187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLV-----PTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQY 261 (537)
Q Consensus 187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~-----Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~ 261 (537)
.+++|.+.+|++++|+|+||||||||+++|+|. .. |+.| +|.++| ..+..++. . ...++..
T Consensus 22 ~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~----~~~~~~~~~~G----~i~~~g-~~i~~~~~---~--~~~~~~~ 87 (251)
T PRK14244 22 FDINLDIYKREVTAFIGPSGCGKSTFLRCFNRM----NDFVPNCKVKG----ELDIDG-IDVYSVDT---N--VVLLRAK 87 (251)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh----cccCCCCCcce----EEEECC-EehHhccc---c--hHHHhhh
Confidence 345677889999999999999999999999998 65 4799 888887 44322111 0 1123467
Q ss_pred hhccccCCCCCCCccceeeEEeecCcccccCCcccccccC---cC-CccccCCccEEEeccCcc---CccchhhhhcCCC
Q psy16304 262 LGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSAT---HL-PLVDFRSVPILVLGLDNA---GKSSIIKRILGEP 334 (537)
Q Consensus 262 i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~---~l-~~~~~~~~~L~llGl~~~---gKs~li~~LSgG~ 334 (537)
+++++|++.+++. +. .+ ++........ .. .........+..+|+... .....+..|||||
T Consensus 88 i~~v~q~~~~~~~-tv-----~~-------ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq 154 (251)
T PRK14244 88 VGMVFQKPNPFPK-SI-----YD-------NVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQ 154 (251)
T ss_pred EEEEecCcccccC-CH-----HH-------HHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHH
Confidence 9999999775542 11 01 0000000000 00 000011122334454321 1133478899999
Q ss_pred ceeeecccccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhh-hh-hhhhcCC
Q psy16304 335 IISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDR-CQ-VYLMSCN 405 (537)
Q Consensus 335 rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~-~~-i~ll~~G 405 (537)
+||+ +++++++. + |+++++| |+|++.. ...+..+ .. +.+++++ +|+...... ++ ++++++|
T Consensus 155 ~qrv----~laral~~-~--p~llllDEPt~~LD~~~~~~l~~~l~~~-~~-~~tiiii-sH~~~~~~~~~d~i~~l~~G 224 (251)
T PRK14244 155 QQRL----CIARAIAV-K--PTMLLMDEPCSALDPVATNVIENLIQEL-KK-NFTIIVV-THSMKQAKKVSDRVAFFQSG 224 (251)
T ss_pred HHHH----HHHHHHhc-C--CCEEEEeCCCccCCHHHHHHHHHHHHHH-hc-CCeEEEE-eCCHHHHHhhcCEEEEEECC
Confidence 9999 99999996 5 8999999 9999332 2233333 22 4567777 899887764 33 8999999
Q ss_pred cEEEEecccch
Q psy16304 406 CQVYLISAKNL 416 (537)
Q Consensus 406 ~ii~~g~nkdl 416 (537)
+++..+...++
T Consensus 225 ~i~~~~~~~~~ 235 (251)
T PRK14244 225 RIVEYNTTQEI 235 (251)
T ss_pred EEEEeCCHHHH
Confidence 99887776655
No 275
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=3.2e-19 Score=179.50 Aligned_cols=212 Identities=15% Similarity=0.116 Sum_probs=129.2
Q ss_pred hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCc----
Q psy16304 152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPT---- 227 (537)
Q Consensus 152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt---- 227 (537)
++.++++.+.|+.... -.++++.+.+|++++|+|+||+|||||+++|+|. ..|+
T Consensus 7 ~l~~~nl~~~~~~~~i------------------l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl----~~~~g~i~ 64 (261)
T PRK14258 7 AIKVNNLSFYYDTQKI------------------LEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRM----NELESEVR 64 (261)
T ss_pred eEEEeeEEEEeCCeeE------------------eeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcc----cCCCCCcc
Confidence 4567777776653211 2335677889999999999999999999999999 7764
Q ss_pred -eeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccc--ccc-CcC
Q psy16304 228 -VGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDEL--TSA-THL 303 (537)
Q Consensus 228 -~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l--~~~-~~l 303 (537)
.| ++.++| .++..... . ...++..+++++|++.+++ .+. .+ ++.... ... ...
T Consensus 65 ~~G----~i~~~g-~~i~~~~~-~----~~~~~~~i~~~~q~~~l~~-~tv-----~e-------nl~~~~~~~~~~~~~ 121 (261)
T PRK14258 65 VEG----RVEFFN-QNIYERRV-N----LNRLRRQVSMVHPKPNLFP-MSV-----YD-------NVAYGVKIVGWRPKL 121 (261)
T ss_pred ccc----eEEECC-EEhhcccc-c----hHHhhccEEEEecCCccCc-ccH-----HH-------HHHHHHHhcCCCcHH
Confidence 66 677765 33321100 0 0122366899999876553 211 11 000000 000 000
Q ss_pred CccccCCccEEEeccCc---cCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH--HH---HH
Q psy16304 304 PLVDFRSVPILVLGLDN---AGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR--TI---WK 373 (537)
Q Consensus 304 ~~~~~~~~~L~llGl~~---~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~--~l---~~ 373 (537)
.........+..+|+.+ ......+..|||||+||+ +++++++. + |+++++| |+|++... .+ +.
T Consensus 122 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv----~laral~~-~--p~vllLDEP~~~LD~~~~~~l~~~l~ 194 (261)
T PRK14258 122 EIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRL----CIARALAV-K--PKVLLMDEPCFGLDPIASMKVESLIQ 194 (261)
T ss_pred HHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHH----HHHHHHhc-C--CCEEEEeCCCccCCHHHHHHHHHHHH
Confidence 00001111122333321 112344788999999999 99999996 5 8999999 99994332 22 23
Q ss_pred HHHhcCCEEEEEEeCCCcchhhhhh--hhhhcC-----CcEEEEecccch
Q psy16304 374 QYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSC-----NCQVYLISAKNL 416 (537)
Q Consensus 374 ~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~-----G~ii~~g~nkdl 416 (537)
.+.+..+.+++++ +|+.......+ ++++++ |+++..+.+.++
T Consensus 195 ~l~~~~~~tiiiv-sH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~ 243 (261)
T PRK14258 195 SLRLRSELTMVIV-SHNLHQVSRLSDFTAFFKGNENRIGQLVEFGLTKKI 243 (261)
T ss_pred HHHHhCCCEEEEE-ECCHHHHHHhcCEEEEEccCCCcCceEEEeCCHHHH
Confidence 3322234667777 89988876544 888998 999888777766
No 276
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=4.4e-19 Score=180.82 Aligned_cols=212 Identities=14% Similarity=0.112 Sum_probs=131.7
Q ss_pred HhhhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCcccc---
Q psy16304 149 RGILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLV--- 225 (537)
Q Consensus 149 ~~~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~--- 225 (537)
...++.++++.+.|+...+ -.++++.+.+|++++|+|+||||||||+++|+|. ..
T Consensus 36 ~~~~l~i~~l~~~~~~~~i------------------l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl----~~~~~ 93 (285)
T PRK14254 36 GETVIEARDLNVFYGDEQA------------------LDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRM----NDLID 93 (285)
T ss_pred CCceEEEEEEEEEECCEee------------------EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc----CCccc
Confidence 3456778888887654222 2335677889999999999999999999999998 65
Q ss_pred --CceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcC
Q psy16304 226 --PTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHL 303 (537)
Q Consensus 226 --Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l 303 (537)
|+.| +|.++| ..+...+. .. ..++..+++++|++.++.. +. .+ ++...+. ....
T Consensus 94 ~~p~~G----~I~i~G-~~i~~~~~-~~----~~~~~~i~~v~q~~~l~~~-tv-----~e-------nl~~~~~-~~~~ 149 (285)
T PRK14254 94 AARVEG----ELTFRG-KNVYDADV-DP----VALRRRIGMVFQKPNPFPK-SI-----YD-------NVAYGLK-IQGY 149 (285)
T ss_pred CCCCce----EEEECC-EEcccccc-ch----HhhhccEEEEecCCccCcC-CH-----HH-------HHHHHHH-HcCC
Confidence 6899 999887 44321111 01 1223678999999775542 11 00 0000000 0000
Q ss_pred C--ccccCCccEEEeccCc---cCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH--H---H
Q psy16304 304 P--LVDFRSVPILVLGLDN---AGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR--T---I 371 (537)
Q Consensus 304 ~--~~~~~~~~L~llGl~~---~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~--~---l 371 (537)
. ...+....+..+|+.. ......+.+|||||+||+ +++++++. + |++++|| |+|++... . .
T Consensus 150 ~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv----~LAraL~~-~--p~lLLLDEPts~LD~~~~~~l~~~ 222 (285)
T PRK14254 150 DGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRL----CIARAIAP-D--PEVILMDEPASALDPVATSKIEDL 222 (285)
T ss_pred cHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHH----HHHHHHHc-C--CCEEEEeCCCCCCCHHHHHHHHHH
Confidence 0 0001112222444421 012334789999999999 99999996 5 8999999 99993332 2 2
Q ss_pred HHHHHhcCCEEEEEEeCCCcchhhhhh--hh-hhcCCcEEEEecccch
Q psy16304 372 WKQYLGTVSQTLLVSHSLSGRPDDRCQ--VY-LMSCNCQVYLISAKNL 416 (537)
Q Consensus 372 ~~~~~~~~~~vIlVvdshd~~~~~~~~--i~-ll~~G~ii~~g~nkdl 416 (537)
+..+.+ +.+++++ +|+.......+ ++ ++++|+++..+...++
T Consensus 223 L~~~~~--~~tiii~-tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~ 267 (285)
T PRK14254 223 IEELAE--EYTVVIV-THNMQQAARISDKTAVFLTGGELVEFDDTDKI 267 (285)
T ss_pred HHHHhc--CCEEEEE-eCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHH
Confidence 233332 2566666 89988876543 44 5699999887766555
No 277
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=4e-19 Score=181.21 Aligned_cols=194 Identities=14% Similarity=0.100 Sum_probs=119.4
Q ss_pred cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCcccc-----CceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhh
Q psy16304 188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLV-----PTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYL 262 (537)
Q Consensus 188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~-----Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i 262 (537)
++++.+.+|++++|+|+||||||||+++|+|. .. |+.| +|.++| ..+..... . ...++..+
T Consensus 57 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl----~~~~p~~~~~G----~I~~~g-~~i~~~~~---~--~~~~~~~i 122 (286)
T PRK14275 57 KVNADILSKYVTAIIGPSGCGKSTFLRAINRM----NDLIPSCHTTG----ALMFDG-EDIYGKFT---D--EVLLRKKI 122 (286)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc----cccCCCCCCce----EEEECC-EEhhhccc---c--hHHhhhcE
Confidence 45677889999999999999999999999997 53 4899 899887 44321110 0 11234679
Q ss_pred hccccCCCCCCCccceeeEEeecCcccccCCccccc--ccCcCC-ccccCCccEEEeccCc---cCccchhhhhcCCCce
Q psy16304 263 GTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELT--SATHLP-LVDFRSVPILVLGLDN---AGKSSIIKRILGEPII 336 (537)
Q Consensus 263 ~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~--~~~~l~-~~~~~~~~L~llGl~~---~gKs~li~~LSgG~rq 336 (537)
++++|++.++.. +. .| ++..... ...... ........+..+|+.. ......+..|||||+|
T Consensus 123 ~~v~q~~~l~~~-tv-----~e-------nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~q 189 (286)
T PRK14275 123 GMVFQKPNPFPK-SI-----FD-------NIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQ 189 (286)
T ss_pred EEECCCCCCCcc-CH-----HH-------HHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHH
Confidence 999999875532 11 11 0000000 000000 0000011111233210 1123447899999999
Q ss_pred eeecccccccceeccCCceEEEEEe--cCchhhH--HHHHHHHHhc-CCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEE
Q psy16304 337 SLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIWKQYLGT-VSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVY 409 (537)
Q Consensus 337 rvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l~~~~~~~-~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~ 409 (537)
|+ +++++++. + |++++|| |+|++.. ..+++.+.+. ...+++++ +|+....... + ++++++|+++.
T Consensus 190 rv----~LAraL~~-~--p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIiv-sH~~~~~~~~~d~i~~L~~G~i~~ 261 (286)
T PRK14275 190 RL----CVARTLAV-E--PEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIV-THNMQQASRVSDYTMFFYEGVLVE 261 (286)
T ss_pred HH----HHHHHHhc-C--CCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEE-eCCHHHHHHhCCEEEEEECCEEEE
Confidence 99 99999996 5 8999999 9999433 2222322211 13466666 8988887653 3 88999999988
Q ss_pred Eecccch
Q psy16304 410 LISAKNL 416 (537)
Q Consensus 410 ~g~nkdl 416 (537)
.+...++
T Consensus 262 ~g~~~~~ 268 (286)
T PRK14275 262 HAPTAQL 268 (286)
T ss_pred eCCHHHH
Confidence 8776665
No 278
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.73 E-value=1.6e-18 Score=190.43 Aligned_cols=202 Identities=10% Similarity=0.038 Sum_probs=126.1
Q ss_pred ccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhc
Q psy16304 185 LPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGT 264 (537)
Q Consensus 185 ~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~ 264 (537)
+-.+++|.+.+|++++|+|+||||||||+++|+|. ..|+.| +|.++| ..+. .... ....+..+++
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl----~~p~~G----~I~~~g-~~~~-----~~~~-~~~~~~~i~~ 342 (510)
T PRK09700 278 KVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGV----DKRAGG----EIRLNG-KDIS-----PRSP-LDAVKKGMAY 342 (510)
T ss_pred cccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCC----CcCCCC----eEEECC-EECC-----CCCH-HHHHHCCcEE
Confidence 34577889999999999999999999999999999 899999 998887 3331 1111 1122356899
Q ss_pred cccCC---CCCCCccce--eeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeee
Q psy16304 265 VSQTP---LGRPDSRTC--QVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLV 339 (537)
Q Consensus 265 v~Q~~---~l~~~~~~~--il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs 339 (537)
++|++ .+++..+.. +.+...... ......+...............+..+|+........+.+|||||+||+
T Consensus 343 v~q~~~~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv- 418 (510)
T PRK09700 343 ITESRRDNGFFPNFSIAQNMAISRSLKD---GGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKV- 418 (510)
T ss_pred ccCccccCCCcCCCcHHHHhcccccccc---ccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHH-
Confidence 99973 333332221 100000000 000000000000000011223455677752223555899999999999
Q ss_pred cccccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEE
Q psy16304 340 PTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYL 410 (537)
Q Consensus 340 ~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~ 410 (537)
++|++++. + |++++|| |+|++.. ..++..+.+. +.+++++ +||.......+ ++++++|+++..
T Consensus 419 ---~lAral~~-~--p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tvi~v-sHd~~~~~~~~d~i~~l~~G~i~~~ 490 (510)
T PRK09700 419 ---LISKWLCC-C--PEVIIFDEPTRGIDVGAKAEIYKVMRQLADD-GKVILMV-SSELPEIITVCDRIAVFCEGRLTQI 490 (510)
T ss_pred ---HHHHHHhc-C--CCEEEECCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEE-cCCHHHHHhhCCEEEEEECCEEEEE
Confidence 99999996 5 8999999 9999332 2233344333 4567777 89988776544 888999998876
Q ss_pred ecc
Q psy16304 411 ISA 413 (537)
Q Consensus 411 g~n 413 (537)
+..
T Consensus 491 ~~~ 493 (510)
T PRK09700 491 LTN 493 (510)
T ss_pred ecC
Confidence 654
No 279
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.73 E-value=4.5e-19 Score=174.55 Aligned_cols=194 Identities=12% Similarity=0.069 Sum_probs=116.7
Q ss_pred cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304 188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ 267 (537)
Q Consensus 188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q 267 (537)
++++.+.+|++++|+|+||||||||+++|+|. ..|+.| ++.++| ..+...+ ...++..+++++|
T Consensus 21 ~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~----~~~~~G----~i~~~g-~~~~~~~-------~~~~~~~i~~~~q 84 (229)
T cd03254 21 DINFSIKPGETVAIVGPTGAGKTTLINLLMRF----YDPQKG----QILIDG-IDIRDIS-------RKSLRSMIGVVLQ 84 (229)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC----cCCCCC----EEEECC-EeHHHcC-------HHHHhhhEEEecC
Confidence 45677889999999999999999999999999 899999 888887 3332111 1123366899999
Q ss_pred CCCCCCCccc--eeeEEeecCcccccCCcccccccCcCCccccCCccEEEe--ccCccCccchhhhhcCCCceeeecccc
Q psy16304 268 TPLGRPDSRT--CQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVL--GLDNAGKSSIIKRILGEPIISLVPTVG 343 (537)
Q Consensus 268 ~~~l~~~~~~--~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~ll--Gl~~~gKs~li~~LSgG~rqrvs~ti~ 343 (537)
++.++.. +. .+.+.. ... ....+.+.+... .+ ...+..+ |+.... ...+.+||+||+||+ +
T Consensus 85 ~~~~~~~-tv~~~~~~~~-~~~-~~~~~~~~~~~~-~l------~~~~~~~~~~~~~~~-~~~~~~LS~G~~~rv----~ 149 (229)
T cd03254 85 DTFLFSG-TIMENIRLGR-PNA-TDEEVIEAAKEA-GA------HDFIMKLPNGYDTVL-GENGGNLSQGERQLL----A 149 (229)
T ss_pred Cchhhhh-HHHHHHhccC-CCC-CHHHHHHHHHHh-Ch------HHHHHhCcccccCHh-hcCCCcCCHHHHHHH----H
Confidence 9765432 11 000000 000 000000000000 00 0000011 222221 233688999999999 9
Q ss_pred cccceeccCCceEEEEEe--cCchhhHH--HHHHHHHhc-CCEEEEEEeCCCcchhhhhh-hhhhcCCcEEEEecccch
Q psy16304 344 FNRARVEYGNKYEVFLYD--LGGSEDFR--TIWKQYLGT-VSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 344 la~all~~~e~p~lllLD--T~Gl~~~~--~l~~~~~~~-~~~vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g~nkdl 416 (537)
++++++. + |+++++| |+|++... .+++.+.+. .+.+++++ +|+......++ ++++++|++...+...++
T Consensus 150 la~al~~-~--p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~-sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~ 224 (229)
T cd03254 150 IARAMLR-D--PKILILDEATSNIDTETEKLIQEALEKLMKGRTSIII-AHRLSTIKNADKILVLDDGKIIEEGTHDEL 224 (229)
T ss_pred HHHHHhc-C--CCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEE-ecCHHHHhhCCEEEEEeCCeEEEeCCHHHH
Confidence 9999996 5 8999999 99994322 222222221 23456666 78877666544 899999998876554443
No 280
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=5.5e-19 Score=194.97 Aligned_cols=178 Identities=15% Similarity=0.124 Sum_probs=117.3
Q ss_pred cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304 188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ 267 (537)
Q Consensus 188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q 267 (537)
++++.+.+|++++|+|+||||||||+++|+|. ..|+.| +|.+++. ..+++++|
T Consensus 337 ~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~----~~p~~G----~i~~~~~-------------------~~i~~~~q 389 (530)
T PRK15064 337 NLNLLLEAGERLAIIGENGVGKTTLLRTLVGE----LEPDSG----TVKWSEN-------------------ANIGYYAQ 389 (530)
T ss_pred CcEEEECCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCe----EEEECCc-------------------eEEEEEcc
Confidence 45678889999999999999999999999999 999999 7777651 23667777
Q ss_pred CCC--CCCCccceeeEEeecCcccccCCcccccccC-cCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccccc
Q psy16304 268 TPL--GRPDSRTCQVYLIMCGVHQVSGIPDELTSAT-HLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF 344 (537)
Q Consensus 268 ~~~--l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~-~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~l 344 (537)
++. +....+. .+.+.... ...........+..+|+........+.+|||||+||+ ++
T Consensus 390 ~~~~~~~~~~t~----------------~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv----~l 449 (530)
T PRK15064 390 DHAYDFENDLTL----------------FDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRM----LF 449 (530)
T ss_pred cccccCCCCCcH----------------HHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHH----HH
Confidence 643 1111111 00000000 0000111222344566632223455899999999999 99
Q ss_pred ccceeccCCceEEEEEe--cCchhhHHH-HHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEE-EEecccch
Q psy16304 345 NRARVEYGNKYEVFLYD--LGGSEDFRT-IWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQV-YLISAKNL 416 (537)
Q Consensus 345 a~all~~~e~p~lllLD--T~Gl~~~~~-l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii-~~g~nkdl 416 (537)
+++++. + |++++|| |+|++.... .+.++++...++++++ +||.......+ ++++++|+++ ..+...++
T Consensus 450 a~al~~-~--p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tvi~v-sHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~ 523 (530)
T PRK15064 450 GKLMMQ-K--PNVLVMDEPTNHMDMESIESLNMALEKYEGTLIFV-SHDREFVSSLATRIIEITPDGVVDFSGTYEEY 523 (530)
T ss_pred HHHHhc-C--CCEEEEcCCCCCCCHHHHHHHHHHHHHCCCEEEEE-eCCHHHHHHhCCEEEEEECCeEEEcCCCHHHH
Confidence 999996 5 8999999 999944433 2233444445677777 89998877644 8889999987 44444343
No 281
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.73 E-value=5.6e-19 Score=171.60 Aligned_cols=184 Identities=11% Similarity=0.103 Sum_probs=116.7
Q ss_pred hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304 152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN 231 (537)
Q Consensus 152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t 231 (537)
++.++++.+.|+.... ..++++.+.+|++++|+|+||||||||+++|+|. ..|++|
T Consensus 2 ~l~~~~l~~~~~~~~~------------------l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~----~~~~~G-- 57 (207)
T PRK13539 2 MLEGEDLACVRGGRVL------------------FSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGL----LPPAAG-- 57 (207)
T ss_pred EEEEEeEEEEECCeEE------------------EeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCc--
Confidence 4567777776653222 2345677889999999999999999999999999 899999
Q ss_pred eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCc
Q psy16304 232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSV 311 (537)
Q Consensus 232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~ 311 (537)
+|.++| ..+. . .. .+..+++++|...++...+.. +++....... .. .......
T Consensus 58 --~i~~~g-~~~~---~---~~----~~~~~~~~~~~~~~~~~~tv~------------~~l~~~~~~~-~~-~~~~~~~ 110 (207)
T PRK13539 58 --TIKLDG-GDID---D---PD----VAEACHYLGHRNAMKPALTVA------------ENLEFWAAFL-GG-EELDIAA 110 (207)
T ss_pred --eEEECC-EeCc---c---hh----hHhhcEEecCCCcCCCCCcHH------------HHHHHHHHhc-CC-cHHHHHH
Confidence 898887 3321 1 11 235688888776543322210 0000000000 00 0011223
Q ss_pred cEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhh-----HHHHHHHHHhcCCEEEE
Q psy16304 312 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSED-----FRTIWKQYLGTVSQTLL 384 (537)
Q Consensus 312 ~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~-----~~~l~~~~~~~~~~vIl 384 (537)
.+..+|+.... ...+.+||+||+||+ +++++++. + |+++++| |+|++. +...+..+.++ +.+++
T Consensus 111 ~l~~~~l~~~~-~~~~~~LS~G~~qrl----~la~al~~-~--p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii 181 (207)
T PRK13539 111 ALEAVGLAPLA-HLPFGYLSAGQKRRV----ALARLLVS-N--RPIWILDEPTAALDAAAVALFAELIRAHLAQ-GGIVI 181 (207)
T ss_pred HHHHcCCHHHH-cCChhhcCHHHHHHH----HHHHHHhc-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHHC-CCEEE
Confidence 34456665433 445789999999999 99999996 5 8999999 999932 22233343333 45666
Q ss_pred EEeCCCcchhhh
Q psy16304 385 VSHSLSGRPDDR 396 (537)
Q Consensus 385 Vvdshd~~~~~~ 396 (537)
++ +|+......
T Consensus 182 i~-sH~~~~~~~ 192 (207)
T PRK13539 182 AA-THIPLGLPG 192 (207)
T ss_pred EE-eCCchhhcc
Confidence 66 788776655
No 282
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=5.8e-19 Score=176.40 Aligned_cols=212 Identities=14% Similarity=0.095 Sum_probs=130.1
Q ss_pred hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCc----
Q psy16304 152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPT---- 227 (537)
Q Consensus 152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt---- 227 (537)
++.++++.+.|++..+ -.++++.+.+|++++|+|+||||||||+++|+|. ..|+
T Consensus 4 ~l~~~~l~~~~~~~~i------------------l~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl----~~~~~~~~ 61 (251)
T PRK14249 4 KIKIRGVNFFYHKHQV------------------LKNINMDFPERQITAIIGPSGCGKSTLLRALNRM----NDIVSGAR 61 (251)
T ss_pred eEEEEEEEEEECCeeE------------------ecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcc----cCccccCC
Confidence 4567777776654222 2334577889999999999999999999999999 7776
Q ss_pred -eeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCC-ccceeeEEeecCcccccCCcccccccCcCCc
Q psy16304 228 -VGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPD-SRTCQVYLIMCGVHQVSGIPDELTSATHLPL 305 (537)
Q Consensus 228 -~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~ 305 (537)
.| +|.++| ..+..++. . ...++..+++++|++.+++. ..+.+.+.. . ..... ... ..
T Consensus 62 ~~G----~v~~~g-~~~~~~~~---~--~~~~~~~i~~v~q~~~~~~~tv~enl~~~~-~----~~~~~-----~~~-~~ 120 (251)
T PRK14249 62 LEG----AVLLDN-ENIYSPNL---D--VVNLRKRVGMVFQQPNPFPKSIFDNVAFGP-R----MLGTT-----AQS-RL 120 (251)
T ss_pred ccc----EEEECC-EEcccccc---C--hHHhhceEEEEecCCccCcCcHHHHHhhHH-H----hcCCC-----hhh-HH
Confidence 68 888887 44321111 0 12234679999999876542 001010000 0 00000 000 00
Q ss_pred cccCCccEEEeccCc---cCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH-----HHHHHH
Q psy16304 306 VDFRSVPILVLGLDN---AGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR-----TIWKQY 375 (537)
Q Consensus 306 ~~~~~~~L~llGl~~---~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~-----~l~~~~ 375 (537)
.......+..+|+.. ......+..||+||+||+ +++++++. + |++++|| |+|++... .++..+
T Consensus 121 ~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv----~laral~~-~--p~lllLDEPt~~LD~~~~~~l~~~l~~~ 193 (251)
T PRK14249 121 DEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRL----CIARVLAI-E--PEVILMDEPCSALDPVSTMRIEELMQEL 193 (251)
T ss_pred HHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHH----HHHHHHhc-C--CCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 000011111223211 012344788999999999 99999996 5 8999999 99994332 233333
Q ss_pred HhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEecccch
Q psy16304 376 LGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 376 ~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~nkdl 416 (537)
.+ ..+++++ +|+....... + ++++++|++...+.+.++
T Consensus 194 -~~-~~tiliv-sh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14249 194 -KQ-NYTIAIV-THNMQQAARASDWTGFLLTGDLVEYGRTGEI 233 (251)
T ss_pred -hc-CCEEEEE-eCCHHHHHhhCCEEEEEeCCeEEEeCCHHHH
Confidence 22 3567777 8888877664 3 889999999888877665
No 283
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.73 E-value=3.8e-19 Score=177.70 Aligned_cols=202 Identities=15% Similarity=0.147 Sum_probs=118.6
Q ss_pred cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304 188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ 267 (537)
Q Consensus 188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q 267 (537)
++++.+.+|++++|+|+||||||||+++|+|.. .+.|+.| ++.++| .++..++. .. + ....+++++|
T Consensus 25 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~--~~~~~~G----~i~~~g-~~~~~~~~---~~-~--~~~~~~~~~q 91 (252)
T CHL00131 25 GLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHP--AYKILEG----DILFKG-ESILDLEP---EE-R--AHLGIFLAFQ 91 (252)
T ss_pred cceeEEcCCcEEEEECCCCCCHHHHHHHHcCCC--cCcCCCc----eEEECC-EEcccCCh---hh-h--heeeEEEEec
Confidence 456778899999999999999999999999961 0368999 899887 44432211 11 1 1123677888
Q ss_pred CCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhh-hhcCCCceeeeccccccc
Q psy16304 268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIK-RILGEPIISLVPTVGFNR 346 (537)
Q Consensus 268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~-~LSgG~rqrvs~ti~la~ 346 (537)
++.+++..+..-.+........ ... .................+..+|+........+. .|||||+||+ ++++
T Consensus 92 ~~~~~~~~~~~~~l~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv----~la~ 164 (252)
T CHL00131 92 YPIEIPGVSNADFLRLAYNSKR--KFQ-GLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRN----EILQ 164 (252)
T ss_pred cccccccccHHHHHHHhhhhhh--ccc-ccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHH----HHHH
Confidence 8765543221000000000000 000 000000000001112234456665321233355 5999999999 9999
Q ss_pred ceeccCCceEEEEEe--cCchhhH--HHHH---HHHHhcCCEEEEEEeCCCcchhhh--hh-hhhhcCCcEEEEeccc
Q psy16304 347 ARVEYGNKYEVFLYD--LGGSEDF--RTIW---KQYLGTVSQTLLVSHSLSGRPDDR--CQ-VYLMSCNCQVYLISAK 414 (537)
Q Consensus 347 all~~~e~p~lllLD--T~Gl~~~--~~l~---~~~~~~~~~vIlVvdshd~~~~~~--~~-i~ll~~G~ii~~g~nk 414 (537)
+++. + |+++++| |+|++.. ..++ ..+.+. +.+++++ +|+...... ++ ++++++|+++..+.++
T Consensus 165 al~~-~--p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~~-tH~~~~~~~~~~d~i~~l~~G~i~~~~~~~ 237 (252)
T CHL00131 165 MALL-D--SELAILDETDSGLDIDALKIIAEGINKLMTS-ENSIILI-THYQRLLDYIKPDYVHVMQNGKIIKTGDAE 237 (252)
T ss_pred HHHc-C--CCEEEEcCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEE-ecCHHHHHhhhCCEEEEEeCCEEEEecChh
Confidence 9996 5 8999999 9999333 2233 333332 4566666 788877664 34 8889999998877665
No 284
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.73 E-value=4.5e-19 Score=178.98 Aligned_cols=210 Identities=11% Similarity=0.095 Sum_probs=130.2
Q ss_pred hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCcccc-----C
Q psy16304 152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLV-----P 226 (537)
Q Consensus 152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~-----P 226 (537)
++.++++.+.|++... -.++++.+.+|++++|+|+||||||||+++|+|. +. |
T Consensus 20 ~l~~~nl~~~~~~~~i------------------l~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl----~~~~~~~~ 77 (267)
T PRK14237 20 ALSTKDLHVYYGKKEA------------------IKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRM----NDTIDIAR 77 (267)
T ss_pred EEEEeeEEEEECCeee------------------EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhc----cCccCCCC
Confidence 4577888887643221 2345677889999999999999999999999998 65 5
Q ss_pred ceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC--
Q psy16304 227 TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP-- 304 (537)
Q Consensus 227 t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~-- 304 (537)
+.| +|.++| .++...+. . ....+..+++++|++.++.. +. .+ ++...........
T Consensus 78 ~~G----~i~~~g-~~~~~~~~---~--~~~~~~~i~~v~q~~~~~~~-tv-----~e-------ni~~~~~~~~~~~~~ 134 (267)
T PRK14237 78 VTG----QILYRG-IDINRKEI---N--VYEMRKHIGMVFQRPNPFAK-SI-----YE-------NITFALERAGVKDKK 134 (267)
T ss_pred cce----EEEECC-EEcccccC---C--hHHHhcceEEEecCCccccc-cH-----HH-------HHHhHHHhcCCCCHH
Confidence 899 898887 44421100 0 11223679999999775532 11 11 0000000000000
Q ss_pred -ccccCCccEEEeccCc---cCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-----HHHHH
Q psy16304 305 -LVDFRSVPILVLGLDN---AGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWK 373 (537)
Q Consensus 305 -~~~~~~~~L~llGl~~---~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~ 373 (537)
........+..+|+.. ......+.+||+||+||+ +++++++. + |+++++| |+|++.. ..++.
T Consensus 135 ~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl----~laral~~-~--p~lllLDEPt~~LD~~~~~~l~~~l~ 207 (267)
T PRK14237 135 VLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRL----CIARAIAV-K--PDILLMDEPASALDPISTMQLEETMF 207 (267)
T ss_pred HHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHH----HHHHHHhc-C--CCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 0000111122333321 112344789999999999 99999997 5 8999999 9999333 22233
Q ss_pred HHHhcCCEEEEEEeCCCcchhhh-hh-hhhhcCCcEEEEecccch
Q psy16304 374 QYLGTVSQTLLVSHSLSGRPDDR-CQ-VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 374 ~~~~~~~~vIlVvdshd~~~~~~-~~-i~ll~~G~ii~~g~nkdl 416 (537)
.+. . +.+++++ +|+...... ++ ++++++|+++..+...++
T Consensus 208 ~~~-~-~~tiii~-tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 249 (267)
T PRK14237 208 ELK-K-NYTIIIV-THNMQQAARASDYTAFFYLGDLIEYDKTRNI 249 (267)
T ss_pred HHh-c-CCEEEEE-ecCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 332 2 3566666 788877654 33 899999999988877766
No 285
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.73 E-value=4.2e-19 Score=173.97 Aligned_cols=187 Identities=13% Similarity=0.069 Sum_probs=118.8
Q ss_pred ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304 187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS 266 (537)
Q Consensus 187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~ 266 (537)
..+++.+.+|++++|+|+||||||||+++|+|. +.|++| +|.++| ..+...+. ......+..+++++
T Consensus 22 ~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~----~~~~~G----~i~~~g-~~~~~~~~----~~~~~~~~~i~~~~ 88 (220)
T TIGR02982 22 FDINLEINPGEIVILTGPSGSGKTTLLTLIGGL----RSVQEG----SLKVLG-QELYGASE----KELVQLRRNIGYIF 88 (220)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCe----EEEECC-EEhHhcCH----hHHHHHHhheEEEc
Confidence 445677889999999999999999999999999 999999 898887 43321110 11112346799999
Q ss_pred cCCCCCCCccceeeEEeecCcccccCCcccccccCcCC---ccccCCccEEEeccCccCccchhhhhcCCCceeeecccc
Q psy16304 267 QTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG 343 (537)
Q Consensus 267 Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~ 343 (537)
|++.++...+.. + ++........... ........+..+|+.... ...+.+||+||+||+ +
T Consensus 89 q~~~~~~~~t~~-----~-------n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~lS~G~~qrv----~ 151 (220)
T TIGR02982 89 QAHNLLGFLTAR-----Q-------NVQMALELQPNLSYQEARERARAMLEAVGLGDHL-DYYPHNLSGGQKQRV----A 151 (220)
T ss_pred CChhhcCCCCHH-----H-------HHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhh-hcChhhCCHHHHHHH----H
Confidence 998755432220 0 0000000000000 001122334456765443 445889999999999 9
Q ss_pred cccceeccCCceEEEEEe--cCchhhHH-----HHHHHHHhcCCEEEEEEeCCCcchhhhhh-hhhhcCCcE
Q psy16304 344 FNRARVEYGNKYEVFLYD--LGGSEDFR-----TIWKQYLGTVSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQ 407 (537)
Q Consensus 344 la~all~~~e~p~lllLD--T~Gl~~~~-----~l~~~~~~~~~~vIlVvdshd~~~~~~~~-i~ll~~G~i 407 (537)
++++++. + |+++++| |+|++... ..+..+.+..+.+++++ +|++...+.++ ++++++|++
T Consensus 152 laral~~-~--p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~-sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 152 IARALVH-R--PKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIV-THDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHhc-C--CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEE-eCCHHHHhhCCEEEEEECCEE
Confidence 9999996 5 8999999 88983322 33344443334566666 78876554444 777888764
No 286
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.73 E-value=3.7e-19 Score=166.52 Aligned_cols=208 Identities=13% Similarity=0.079 Sum_probs=142.3
Q ss_pred ccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhc
Q psy16304 185 LPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGT 264 (537)
Q Consensus 185 ~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~ 264 (537)
+.++++|.+.+|+.-+|+|||||||||++..|+|. ..|+.| ++.++|..++.-++. ..+.+..+|-
T Consensus 20 Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGK----trp~~G----~v~f~g~~dl~~~~e------~~IAr~GIGR 85 (249)
T COG4674 20 ALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGK----TRPQEG----EVLFDGDTDLTKLPE------HRIARAGIGR 85 (249)
T ss_pred eeeeeEEEecCCeEEEEECCCCCCceeeeeeeccc----CCCCcc----eEEEcCchhhccCCH------HHHHHhccCc
Confidence 44456788899999999999999999999999999 999999 999887566554443 2456678999
Q ss_pred cccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccccc
Q psy16304 265 VSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF 344 (537)
Q Consensus 265 v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~l 344 (537)
-||.|..|...+..--+ +-...+-..+...+.....-....+.+..+..+|+.... ......||.||+|.+ .+
T Consensus 86 KFQ~PtVfe~ltV~eNL--elA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~-~~~A~~LSHGqKQwL----EI 158 (249)
T COG4674 86 KFQKPTVFENLTVRENL--ELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDER-DRLAALLSHGQKQWL----EI 158 (249)
T ss_pred cccCCeehhhccHHHHH--HHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhh-hhhhhhhccchhhhh----hh
Confidence 99999866554431000 000000111111111111111222445566778887664 555889999999999 77
Q ss_pred ccceeccCCceEEEEEe--cCch-hhHHHHHHHHHhc--CCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchh
Q psy16304 345 NRARVEYGNKYEVFLYD--LGGS-EDFRTIWKQYLGT--VSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLS 417 (537)
Q Consensus 345 a~all~~~e~p~lllLD--T~Gl-~~~~~l~~~~~~~--~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~ 417 (537)
..-+++ + |+++++| ++|+ +.......++++. ..-.|+|+ .||+.+..... +-+++.|.+.+.|+-++++
T Consensus 159 GMll~Q-~--P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVV-EHDM~Fvr~~A~~VTVlh~G~VL~EGsld~v~ 234 (249)
T COG4674 159 GMLLAQ-D--PKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVV-EHDMGFVREIADKVTVLHEGSVLAEGSLDEVQ 234 (249)
T ss_pred heeecc-C--CcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEE-eccHHHHHHhhheeEEEeccceeecccHHHhh
Confidence 777775 4 8999999 8888 4444444333332 23467788 89999988765 8899999999999887763
No 287
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.73 E-value=8.2e-19 Score=167.98 Aligned_cols=169 Identities=17% Similarity=0.133 Sum_probs=105.8
Q ss_pred ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304 187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS 266 (537)
Q Consensus 187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~ 266 (537)
.++++.+.+|++++|+|+||||||||+++|+|. ..|+.| +|.++| .++.. +. .. ...++..+++++
T Consensus 9 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~----~~~~~G----~i~~~g-~~~~~-~~---~~-~~~~~~~i~~~~ 74 (190)
T TIGR01166 9 KGLNFAAERGEVLALLGANGAGKSTLLLHLNGL----LRPQSG----AVLIDG-EPLDY-SR---KG-LLERRQRVGLVF 74 (190)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCce----eEEECC-EEccc-cc---cc-hHHHHhhEEEEe
Confidence 456788889999999999999999999999999 999999 898887 44421 11 01 112235689999
Q ss_pred cCCC--CCCCccceeeEEeecCcccccCCcccccccCcCC---ccccCCccEEEeccCccCccchhhhhcCCCceeeecc
Q psy16304 267 QTPL--GRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPT 341 (537)
Q Consensus 267 Q~~~--l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~t 341 (537)
|++. ++. .+. .+ ++....... ... ...+....+..+|+.... ...+.+||+||+||+
T Consensus 75 q~~~~~~~~-~tv-----~~-------nl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv--- 136 (190)
T TIGR01166 75 QDPDDQLFA-ADV-----DQ-------DVAFGPLNL-GLSEAEVERRVREALTAVGASGLR-ERPTHCLSGGEKKRV--- 136 (190)
T ss_pred cChhhcccc-ccH-----HH-------HHHHHHHHc-CCCHHHHHHHHHHHHHHcCchhhh-hCChhhCCHHHHHHH---
Confidence 9863 221 111 00 000000000 000 001112233456766543 445889999999999
Q ss_pred cccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcch
Q psy16304 342 VGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRP 393 (537)
Q Consensus 342 i~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~ 393 (537)
+++++++. + |+++++| |+|++.. ..++..+.+. +.+++++ +|+.+.
T Consensus 137 -~laral~~-~--p~llllDEPt~~LD~~~~~~~~~~l~~~~~~-~~tili~-sH~~~~ 189 (190)
T TIGR01166 137 -AIAGAVAM-R--PDVLLLDEPTAGLDPAGREQMLAILRRLRAE-GMTVVIS-THDVDL 189 (190)
T ss_pred -HHHHHHhc-C--CCEEEEcCCcccCCHHHHHHHHHHHHHHHHc-CCEEEEE-eecccc
Confidence 99999996 5 8999999 9999332 2233343333 3456666 777653
No 288
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.73 E-value=7.1e-19 Score=173.04 Aligned_cols=184 Identities=16% Similarity=0.190 Sum_probs=118.1
Q ss_pred cccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCcccc---CceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhh
Q psy16304 186 PTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLV---PTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYL 262 (537)
Q Consensus 186 ~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~---Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i 262 (537)
-.++++.+.+|++++|+|+||||||||+++|+|. +. |+.| ++.++| .++. .. .++..+
T Consensus 23 l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~----~~~~~~~~G----~i~~~g-~~~~------~~----~~~~~i 83 (226)
T cd03234 23 LNDVSLHVESGQVMAILGSSGSGKTTLLDAISGR----VEGGGTTSG----QILFNG-QPRK------PD----QFQKCV 83 (226)
T ss_pred ccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCc----cCCCCCCce----EEEECC-EECC------hH----HhcccE
Confidence 3456678889999999999999999999999999 88 8999 888887 3321 11 233678
Q ss_pred hccccCCCCCCCccceeeEEeecCcccccCCccc--ccccCc-CCc--cccCCc-cEEEeccCccCccchhhhhcCCCce
Q psy16304 263 GTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDE--LTSATH-LPL--VDFRSV-PILVLGLDNAGKSSIIKRILGEPII 336 (537)
Q Consensus 263 ~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~--l~~~~~-l~~--~~~~~~-~L~llGl~~~gKs~li~~LSgG~rq 336 (537)
++++|++.+++..+.. + ++... ...... ... ...... .+..+|+.... ...+..||+||+|
T Consensus 84 ~~~~q~~~~~~~~tv~-----e-------nl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~q 150 (226)
T cd03234 84 AYVRQDDILLPGLTVR-----E-------TLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIG-GNLVKGISGGERR 150 (226)
T ss_pred EEeCCCCccCcCCcHH-----H-------HHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhh-cccccCcCHHHHH
Confidence 9999998766543220 0 00000 000000 000 001111 34455555443 3347899999999
Q ss_pred eeecccccccceeccCCceEEEEEe--cCchhhH--HHHH---HHHHhcCCEEEEEEeCCCc-chhhh-hh-hhhhcCCc
Q psy16304 337 SLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIW---KQYLGTVSQTLLVSHSLSG-RPDDR-CQ-VYLMSCNC 406 (537)
Q Consensus 337 rvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l~---~~~~~~~~~vIlVvdshd~-~~~~~-~~-i~ll~~G~ 406 (537)
|+ +++++++. + |+++++| |+|++.. ..++ .++.+. ..+++++ +|+. ..... ++ ++++++|+
T Consensus 151 rl----~laral~~-~--p~illlDEP~~gLD~~~~~~~~~~l~~~~~~-~~tiii~-sh~~~~~~~~~~d~i~~l~~G~ 221 (226)
T cd03234 151 RV----SIAVQLLW-D--PKVLILDEPTSGLDSFTALNLVSTLSQLARR-NRIVILT-IHQPRSDLFRLFDRILLLSSGE 221 (226)
T ss_pred HH----HHHHHHHh-C--CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEE-ecCCCHHHHHhCCEEEEEeCCE
Confidence 99 99999996 5 8999999 9998322 2233 333333 4466666 7876 34443 34 88899999
Q ss_pred EEEE
Q psy16304 407 QVYL 410 (537)
Q Consensus 407 ii~~ 410 (537)
++..
T Consensus 222 i~~~ 225 (226)
T cd03234 222 IVYS 225 (226)
T ss_pred EEec
Confidence 8754
No 289
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.73 E-value=1.6e-18 Score=190.52 Aligned_cols=197 Identities=11% Similarity=0.034 Sum_probs=127.7
Q ss_pred cccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcc
Q psy16304 186 PTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTV 265 (537)
Q Consensus 186 ~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v 265 (537)
-..+++.+.+|++++|+|+||||||||+++|+|. ..|+.| +|.++| .++..+ . .+...+..++++
T Consensus 279 l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl----~~p~~G----~i~~~g-~~i~~~-----~-~~~~~~~~i~~v 343 (510)
T PRK15439 279 FRNISLEVRAGEILGLAGVVGAGRTELAETLYGL----RPARGG----RIMLNG-KEINAL-----S-TAQRLARGLVYL 343 (510)
T ss_pred ccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCC----CCCCCc----EEEECC-EECCCC-----C-HHHHHhCCcEEC
Confidence 3567888999999999999999999999999999 899999 888886 333211 1 111233568999
Q ss_pred ccCCC---CCCCccceeeEEeecCcccccCC-cccccc-cCcCCccccCCccEEEeccC-ccCccchhhhhcCCCceeee
Q psy16304 266 SQTPL---GRPDSRTCQVYLIMCGVHQVSGI-PDELTS-ATHLPLVDFRSVPILVLGLD-NAGKSSIIKRILGEPIISLV 339 (537)
Q Consensus 266 ~Q~~~---l~~~~~~~il~v~Ds~~~~~~~l-~~~l~~-~~~l~~~~~~~~~L~llGl~-~~gKs~li~~LSgG~rqrvs 339 (537)
+|++. +++..+. .+ ..... ...... .............+..+|+. .. ....+.+|||||+||+
T Consensus 344 ~q~~~~~~l~~~~t~-----~~----~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~LSgG~kqrl- 412 (510)
T PRK15439 344 PEDRQSSGLYLDAPL-----AW----NVCALTHNRRGFWIKPARENAVLERYRRALNIKFNH-AEQAARTLSGGNQQKV- 412 (510)
T ss_pred CCChhhCCccCCCcH-----HH----HHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCC-ccCccccCCcHHHHHH-
Confidence 99742 3332221 00 00000 000000 00000001122334467775 33 3555899999999999
Q ss_pred cccccccceeccCCceEEEEEe--cCchhhH--H---HHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEE
Q psy16304 340 PTVGFNRARVEYGNKYEVFLYD--LGGSEDF--R---TIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYL 410 (537)
Q Consensus 340 ~ti~la~all~~~e~p~lllLD--T~Gl~~~--~---~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~ 410 (537)
+++++++. + |++++|| |+|++.. . .++..+.+. +.+++++ +||..+....+ ++++++|+++..
T Consensus 413 ---~la~al~~-~--p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~-g~tiIiv-sHd~~~i~~~~d~i~~l~~G~i~~~ 484 (510)
T PRK15439 413 ---LIAKCLEA-S--PQLLIVDEPTRGVDVSARNDIYQLIRSIAAQ-NVAVLFI-SSDLEEIEQMADRVLVMHQGEISGA 484 (510)
T ss_pred ---HHHHHHhh-C--CCEEEECCCCcCcChhHHHHHHHHHHHHHhC-CCEEEEE-CCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999996 5 8999999 9999322 2 233344333 4677777 89998887644 889999999988
Q ss_pred ecccch
Q psy16304 411 ISAKNL 416 (537)
Q Consensus 411 g~nkdl 416 (537)
+.+.++
T Consensus 485 ~~~~~~ 490 (510)
T PRK15439 485 LTGAAI 490 (510)
T ss_pred EccccC
Confidence 776554
No 290
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.73 E-value=8.2e-19 Score=177.59 Aligned_cols=211 Identities=13% Similarity=0.060 Sum_probs=130.8
Q ss_pred hhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCcccc-----
Q psy16304 151 ILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLV----- 225 (537)
Q Consensus 151 ~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~----- 225 (537)
.++.++++.+.|+.... -.++++.+.+|++++|+|+||||||||+++|+|. ..
T Consensus 24 ~~l~~~nl~~~~~~~~i------------------l~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl----~~~~~~~ 81 (272)
T PRK14236 24 TALEVRNLNLFYGDKQA------------------LFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRM----NDLVDNC 81 (272)
T ss_pred cEEEEEEEEEEECCeeE------------------eeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhc----CCCccCC
Confidence 35678888887653221 2234577889999999999999999999999998 66
Q ss_pred CceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCc-CC
Q psy16304 226 PTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATH-LP 304 (537)
Q Consensus 226 Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~-l~ 304 (537)
|++| ++.++| .++...+ . ....++..+++++|++.++.. +. .+ ++......... ..
T Consensus 82 ~~~G----~i~i~g-~~i~~~~---~--~~~~~~~~i~~v~q~~~l~~~-tv-----~e-------nl~~~~~~~~~~~~ 138 (272)
T PRK14236 82 RIEG----EIRLDG-QNIYDKK---V--DVAELRRRVGMVFQRPNPFPK-SI-----YE-------NVVYGLRLQGINNR 138 (272)
T ss_pred CCce----EEEECC-EECcccc---c--CHHHHhccEEEEecCCccCcc-cH-----HH-------HHHHHHHhcCCCcH
Confidence 4899 898887 4432111 0 011234678999999775542 11 11 00000000000 00
Q ss_pred c--cccCCccEEEeccCc---cCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH-----HHH
Q psy16304 305 L--VDFRSVPILVLGLDN---AGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR-----TIW 372 (537)
Q Consensus 305 ~--~~~~~~~L~llGl~~---~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~-----~l~ 372 (537)
. .......+..+|+.. ......+.+||+||+||+ +++++++. + |+++++| |+|++... ..+
T Consensus 139 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv----~laral~~-~--p~lllLDEPt~gLD~~~~~~l~~~L 211 (272)
T PRK14236 139 RVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRL----VIARAIAI-E--PEVLLLDEPTSALDPISTLKIEELI 211 (272)
T ss_pred HHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHH----HHHHHHHC-C--CCEEEEeCCcccCCHHHHHHHHHHH
Confidence 0 000111122334321 011334788999999999 99999996 5 8999999 99993332 222
Q ss_pred HHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEecccch
Q psy16304 373 KQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 373 ~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~nkdl 416 (537)
..+. + +.+++++ +|+....... + ++++++|+++..+..+++
T Consensus 212 ~~~~-~-~~tiiiv-tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 254 (272)
T PRK14236 212 TELK-S-KYTIVIV-THNMQQAARVSDYTAFMYMGKLVEYGDTDTL 254 (272)
T ss_pred HHHH-h-CCeEEEE-eCCHHHHHhhCCEEEEEECCEEEecCCHHHH
Confidence 3333 2 3566666 8888876543 3 899999999888776665
No 291
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.73 E-value=2.7e-18 Score=163.44 Aligned_cols=153 Identities=14% Similarity=0.093 Sum_probs=103.4
Q ss_pred cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304 188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ 267 (537)
Q Consensus 188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q 267 (537)
++++.+.+|++++|+|+||||||||+++|+|. +.|+.| ++.++| .++..++. ....+..+++++|
T Consensus 18 ~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~----~~~~~G----~i~~~g-~~~~~~~~------~~~~~~~i~~~~q 82 (182)
T cd03215 18 DVSFEVRAGEIVGIAGLVGNGQTELAEALFGL----RPPASG----EITLDG-KPVTRRSP------RDAIRAGIAYVPE 82 (182)
T ss_pred ceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC----CCCCCc----eEEECC-EECCccCH------HHHHhCCeEEecC
Confidence 34577889999999999999999999999999 999999 898887 44332210 1123356888888
Q ss_pred CCC---CCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccccc
Q psy16304 268 TPL---GRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF 344 (537)
Q Consensus 268 ~~~---l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~l 344 (537)
++. ++... ...+++.. + ..||+||+||+ ++
T Consensus 83 ~~~~~~~~~~~----------------------t~~e~l~~-----------~----------~~LS~G~~qrl----~l 115 (182)
T cd03215 83 DRKREGLVLDL----------------------SVAENIAL-----------S----------SLLSGGNQQKV----VL 115 (182)
T ss_pred CcccCcccCCC----------------------cHHHHHHH-----------H----------hhcCHHHHHHH----HH
Confidence 742 11111 11111100 0 01999999999 99
Q ss_pred ccceeccCCceEEEEEe--cCchhhH--HHH---HHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcE
Q psy16304 345 NRARVEYGNKYEVFLYD--LGGSEDF--RTI---WKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQ 407 (537)
Q Consensus 345 a~all~~~e~p~lllLD--T~Gl~~~--~~l---~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~i 407 (537)
+++++. + |+++++| |+|++.. ..+ +..+.+. +.+++++ +|+.......+ ++++++|++
T Consensus 116 a~al~~-~--p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~~tiii~-sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 116 ARWLAR-D--PRVLILDEPTRGVDVGAKAEIYRLIRELADA-GKAVLLI-SSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred HHHHcc-C--CCEEEECCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEE-eCCHHHHHHhCCEEEEecCCcC
Confidence 999997 5 8999999 9998322 222 3333332 4566666 88887776533 778887763
No 292
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.73 E-value=2e-18 Score=165.81 Aligned_cols=155 Identities=14% Similarity=0.207 Sum_probs=104.2
Q ss_pred ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccc--cCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhc
Q psy16304 187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISL--VPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGT 264 (537)
Q Consensus 187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~--~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~ 264 (537)
..+++.+.+|++++|+|+||||||||+++|+|. . .|+.| ++.++| .++. ...+..+++
T Consensus 24 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~----~~~~~~~G----~i~~~g-~~~~-----------~~~~~~i~~ 83 (192)
T cd03232 24 NNISGYVKPGTLTALMGESGAGKTTLLDVLAGR----KTAGVITG----EILING-RPLD-----------KNFQRSTGY 83 (192)
T ss_pred EccEEEEeCCcEEEEECCCCCCHHHHHHHHhCC----CcCCCcce----EEEECC-EehH-----------HHhhhceEE
Confidence 345677889999999999999999999999997 5 48999 888886 3331 112356888
Q ss_pred cccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccccc
Q psy16304 265 VSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF 344 (537)
Q Consensus 265 v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~l 344 (537)
++|++.++...+. .+.+... .. ..+|||||+||+ ++
T Consensus 84 ~~q~~~~~~~~tv----------------~~~l~~~------~~------------------~~~LSgGe~qrv----~l 119 (192)
T cd03232 84 VEQQDVHSPNLTV----------------REALRFS------AL------------------LRGLSVEQRKRL----TI 119 (192)
T ss_pred ecccCccccCCcH----------------HHHHHHH------HH------------------HhcCCHHHhHHH----HH
Confidence 8887654322111 1111100 00 016999999999 99
Q ss_pred ccceeccCCceEEEEEe--cCchhhH--HH---HHHHHHhcCCEEEEEEeCCCcch-h-hhhh-hhhhcC-CcEEEE
Q psy16304 345 NRARVEYGNKYEVFLYD--LGGSEDF--RT---IWKQYLGTVSQTLLVSHSLSGRP-D-DRCQ-VYLMSC-NCQVYL 410 (537)
Q Consensus 345 a~all~~~e~p~lllLD--T~Gl~~~--~~---l~~~~~~~~~~vIlVvdshd~~~-~-~~~~-i~ll~~-G~ii~~ 410 (537)
+++++. + |+++++| |+|++.. .. .++.+.+. ..+++++ +|+... . ..++ ++++++ |+++..
T Consensus 120 a~al~~-~--p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~-~~tiiiv-tH~~~~~~~~~~d~i~~l~~~g~i~~~ 191 (192)
T cd03232 120 GVELAA-K--PSILFLDEPTSGLDSQAAYNIVRFLKKLADS-GQAILCT-IHQPSASIFEKFDRLLLLKRGGKTVYF 191 (192)
T ss_pred HHHHhc-C--CcEEEEeCCCcCCCHHHHHHHHHHHHHHHHc-CCEEEEE-EcCChHHHHhhCCEEEEEcCCCeEEeC
Confidence 999996 5 8999999 9998322 22 23333332 4566666 788763 3 3334 888888 887754
No 293
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.73 E-value=5.8e-19 Score=185.19 Aligned_cols=271 Identities=13% Similarity=0.124 Sum_probs=173.3
Q ss_pred cCCcccccccceeeeeeeccchhhhhHHHHHhhhcccccccccccccccCccccccccC----CCCCCchhHHHHHHHHH
Q psy16304 71 SIEPIEMVEHKMLRDVVLYNMYKAEIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLS----DDPAPTFEVCIVSLLVH 146 (537)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~p~~~~~~~~l~~ 146 (537)
.+.|=-|++-+|+-- ..+.||-..-.++.++...-.+-+|+.++++..+.- +-|+|
T Consensus 272 e~t~G~mIA~SIl~g--------RaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~~m~LP~P------------ 331 (580)
T COG4618 272 EITPGMMIAGSILSG--------RALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAERMPLPAP------------ 331 (580)
T ss_pred cCCcchhhHHHHHhh--------hhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCCCCCC------------
Confidence 556666777776543 234566666666666666666666666665533221 11332
Q ss_pred HHHhhhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccC
Q psy16304 147 LMRGILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVP 226 (537)
Q Consensus 147 ~m~~~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~P 226 (537)
+..+.++++....+.. . ......++|.+.+|+-+|||||+|||||||.++|.|. ..|
T Consensus 332 ---~g~L~Ve~l~~~PPg~------~----------~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~----w~p 388 (580)
T COG4618 332 ---QGALSVERLTAAPPGQ------K----------KPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGI----WPP 388 (580)
T ss_pred ---CceeeEeeeeecCCCC------C----------CcceecceeEecCCceEEEECCCCccHHHHHHHHHcc----ccc
Confidence 2233445544431111 0 2234567788999999999999999999999999999 999
Q ss_pred ceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEee--cCccc------ccCCccccc
Q psy16304 227 TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIM--CGVHQ------VSGIPDELT 298 (537)
Q Consensus 227 t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~D--s~~~~------~~~l~~~l~ 298 (537)
+.| .|.+|| .++..||. +.+- +.+||+||+..+|+.....-+.-++ .+.+. ...+.+
T Consensus 389 ~~G----~VRLDg-a~l~qWd~---e~lG----~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHe--- 453 (580)
T COG4618 389 TSG----SVRLDG-ADLRQWDR---EQLG----RHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHE--- 453 (580)
T ss_pred CCC----cEEecc-hhhhcCCH---HHhc----cccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHH---
Confidence 999 999997 88888887 3333 7899999999988762221111222 22111 111111
Q ss_pred ccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH--HHHHHH
Q psy16304 299 SATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIWKQ 374 (537)
Q Consensus 299 ~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l~~~ 374 (537)
.+-.++..++. .+|..+. .||||||||+ ++||++.- + |.+++|| -+.++.. ..+.+.
T Consensus 454 lIl~lP~GYdT-----~iG~~G~-------~LSgGQRQRI----aLARAlYG--~-P~lvVLDEPNsNLD~~GE~AL~~A 514 (580)
T COG4618 454 LILRLPQGYDT-----RIGEGGA-------TLSGGQRQRI----ALARALYG--D-PFLVVLDEPNSNLDSEGEAALAAA 514 (580)
T ss_pred HHHhCcCCccC-----ccCCCCC-------CCCchHHHHH----HHHHHHcC--C-CcEEEecCCCCCcchhHHHHHHHH
Confidence 11112221211 4454444 3999999999 99999994 4 8999999 4445332 223333
Q ss_pred HH--hcCCEEEEEEeCCCcchhhhhh-hhhhcCCcEEEEecccchhhh
Q psy16304 375 YL--GTVSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLISAKNLSNG 419 (537)
Q Consensus 375 ~~--~~~~~vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g~nkdl~~~ 419 (537)
+. +..+++++|+ +|.......++ +.+|++|++..+|..++...+
T Consensus 515 i~~~k~rG~~vvvi-aHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 515 ILAAKARGGTVVVI-AHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred HHHHHHcCCEEEEE-ecCHHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence 32 3445667777 89999888888 999999999988887776443
No 294
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.73 E-value=1.2e-18 Score=168.04 Aligned_cols=168 Identities=12% Similarity=0.078 Sum_probs=105.7
Q ss_pred ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304 187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS 266 (537)
Q Consensus 187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~ 266 (537)
.++++.+.+|++++|+|+||||||||+++|+|. +.|+.| ++.++| ..+.... ..++..+++++
T Consensus 17 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~----~~~~~G----~i~~~g-~~~~~~~--------~~~~~~i~~~~ 79 (198)
T TIGR01189 17 EGLSFTLNAGEALQVTGPNGIGKTTLLRILAGL----LRPDSG----EVRWNG-TALAEQR--------DEPHRNILYLG 79 (198)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC----CCCCcc----EEEECC-EEcccch--------HHhhhheEEec
Confidence 345677889999999999999999999999999 999999 898887 4432211 12235688999
Q ss_pred cCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccccccc
Q psy16304 267 QTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNR 346 (537)
Q Consensus 267 Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~ 346 (537)
|...+++..+. .+ ++........ . ........+..+|+.... ...+.+||+||+||+ ++++
T Consensus 80 q~~~~~~~~tv-----~~-------~l~~~~~~~~-~-~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv----~la~ 140 (198)
T TIGR01189 80 HLPGLKPELSA-----LE-------NLHFWAAIHG-G-AQRTIEDALAAVGLTGFE-DLPAAQLSAGQQRRL----ALAR 140 (198)
T ss_pred cCcccccCCcH-----HH-------HHHHHHHHcC-C-cHHHHHHHHHHcCCHHHh-cCChhhcCHHHHHHH----HHHH
Confidence 88665433221 00 0000000000 0 001112233355665443 344889999999999 9999
Q ss_pred ceeccCCceEEEEEe--cCchhhH--HHHHH---HHHhcCCEEEEEEeCCCcchhh
Q psy16304 347 ARVEYGNKYEVFLYD--LGGSEDF--RTIWK---QYLGTVSQTLLVSHSLSGRPDD 395 (537)
Q Consensus 347 all~~~e~p~lllLD--T~Gl~~~--~~l~~---~~~~~~~~vIlVvdshd~~~~~ 395 (537)
+++. + |+++++| |+|++.. ..+++ .+.+. +.+++++ +|+.....
T Consensus 141 al~~-~--p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~~-sH~~~~~~ 191 (198)
T TIGR01189 141 LWLS-R--APLWILDEPTTALDKAGVALLAGLLRAHLAR-GGIVLLT-THQDLGLV 191 (198)
T ss_pred HHhc-C--CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEE-Eccccccc
Confidence 9996 5 8999999 9999322 22333 33233 3455555 67654433
No 295
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=4.9e-19 Score=176.99 Aligned_cols=210 Identities=13% Similarity=0.087 Sum_probs=129.1
Q ss_pred hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCcccc--C---
Q psy16304 152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLV--P--- 226 (537)
Q Consensus 152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~--P--- 226 (537)
++.++++.+.|+.... -.++++.+.+|++++|+|+||||||||+++|+|. .. |
T Consensus 5 ~l~~~~l~~~~~~~~~------------------l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl----~~~~~~~~ 62 (252)
T PRK14255 5 IITSSDVHLFYGKFEA------------------LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRM----NDLIPGVT 62 (252)
T ss_pred eEEEEeEEEEECCeeE------------------EecceEEEcCCCEEEEECCCCCCHHHHHHHHhcc----cccCCCCC
Confidence 4567788887653222 2345677889999999999999999999999997 54 4
Q ss_pred ceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCc-
Q psy16304 227 TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPL- 305 (537)
Q Consensus 227 t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~- 305 (537)
++| +|.++| ..+...+. . ...++..+++++|++.++.. +. .+ ++...+........
T Consensus 63 ~~G----~i~~~g-~~~~~~~~----~-~~~~~~~i~~~~q~~~~~~~-tv-----~~-------nl~~~~~~~~~~~~~ 119 (252)
T PRK14255 63 ITG----NVSLRG-QNIYAPNE----D-VVQLRKQVGMVFQQPNPFPF-SI-----YE-------NVIYGLRLAGVKDKA 119 (252)
T ss_pred ccc----EEEEcC-EEcccccc----c-HHHhcCeEEEEECCCccCCC-cH-----HH-------HHHHHHHHcCCCCHH
Confidence 589 898887 44421111 1 11223578999999775541 11 11 00000000000000
Q ss_pred --cccCCccEEEeccCc---cCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH-----HHHH
Q psy16304 306 --VDFRSVPILVLGLDN---AGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR-----TIWK 373 (537)
Q Consensus 306 --~~~~~~~L~llGl~~---~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~-----~l~~ 373 (537)
.......+..+|+.. ......+.+||+||+||+ +++++++. + |+++++| |+|++... .++.
T Consensus 120 ~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv----~laral~~-~--p~llllDEPt~~LD~~~~~~l~~~l~ 192 (252)
T PRK14255 120 VLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRV----CIARVLAV-K--PDVILLDEPTSALDPISSTQIENMLL 192 (252)
T ss_pred HHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHH----HHHHHHhc-C--CCEEEEcCCCccCCHHHHHHHHHHHH
Confidence 000000111222210 112344789999999999 99999996 5 8999999 99994332 2333
Q ss_pred HHHhcCCEEEEEEeCCCcchhhh-hh-hhhhcCCcEEEEecccch
Q psy16304 374 QYLGTVSQTLLVSHSLSGRPDDR-CQ-VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 374 ~~~~~~~~vIlVvdshd~~~~~~-~~-i~ll~~G~ii~~g~nkdl 416 (537)
.+.+ +.+++++ +|+...... ++ ++++++|+++..+.+++.
T Consensus 193 ~~~~--~~tii~v-sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14255 193 ELRD--QYTIILV-THSMHQASRISDKTAFFLTGNLIEFADTKQM 234 (252)
T ss_pred HHHh--CCEEEEE-ECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 4332 3566776 888887754 33 899999999988877765
No 296
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.73 E-value=1.2e-18 Score=193.04 Aligned_cols=180 Identities=17% Similarity=0.120 Sum_probs=115.2
Q ss_pred ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304 187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS 266 (537)
Q Consensus 187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~ 266 (537)
.++++.+.+|++++|+|+||||||||+++|+|. ..|++| +|.+++.. .+++++
T Consensus 339 ~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~----~~p~~G----~i~~~~~~-------------------~i~~v~ 391 (552)
T TIGR03719 339 DDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQ----EQPDSG----TIKIGETV-------------------KLAYVD 391 (552)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHcCC----CCCCCe----EEEECCce-------------------EEEEEe
Confidence 345678889999999999999999999999999 899999 77764311 266777
Q ss_pred cCCC-CCCCccceeeEEeecCcccccCCcccccccCcCC-ccccCCccEEEeccCccCccchhhhhcCCCceeeeccccc
Q psy16304 267 QTPL-GRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP-LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF 344 (537)
Q Consensus 267 Q~~~-l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~-~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~l 344 (537)
|++. +++..+. .+ ++....... ... ........+..+|+........+.+|||||+||+ ++
T Consensus 392 q~~~~~~~~~tv-----~e-------~l~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv----~l 454 (552)
T TIGR03719 392 QSRDALDPNKTV-----WE-------EISGGLDII-QLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRV----HL 454 (552)
T ss_pred CCccccCCCCcH-----HH-------HHHhhcccc-ccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHH----HH
Confidence 7642 2222111 00 000000000 000 0001112344567653323455899999999999 99
Q ss_pred ccceeccCCceEEEEEe--cCchhhHHHHH-HHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcC-CcEEEEeccc
Q psy16304 345 NRARVEYGNKYEVFLYD--LGGSEDFRTIW-KQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSC-NCQVYLISAK 414 (537)
Q Consensus 345 a~all~~~e~p~lllLD--T~Gl~~~~~l~-~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~-G~ii~~g~nk 414 (537)
+++++. + |++++|| |+|++.....+ .+++++..++++++ +||+......+ ++++++ |++....++.
T Consensus 455 a~al~~-~--p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~viiv-sHd~~~~~~~~d~i~~l~~~~~~~~~~g~~ 526 (552)
T TIGR03719 455 AKTLKS-G--GNVLLLDEPTNDLDVETLRALEEALLEFAGCAVVI-SHDRWFLDRIATHILAFEGDSHVEWFEGNY 526 (552)
T ss_pred HHHHhh-C--CCEEEEeCCCCCCCHHHHHHHHHHHHHCCCeEEEE-eCCHHHHHHhCCEEEEEECCCeEEEeCCCH
Confidence 999996 5 8999999 99994433322 33444333566776 89998887644 788876 5776555554
No 297
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.73 E-value=8.6e-19 Score=171.64 Aligned_cols=192 Identities=14% Similarity=0.056 Sum_probs=116.1
Q ss_pred ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304 187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS 266 (537)
Q Consensus 187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~ 266 (537)
.+++|.+.+|++++|+|+||||||||+++|+|. ..|+.| ++.++| ..+..++ . ..++..+++++
T Consensus 21 ~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~----~~~~~G----~i~~~g-~~~~~~~---~----~~~~~~i~~~~ 84 (221)
T cd03244 21 KNISFSIKPGEKVGIVGRTGSGKSSLLLALFRL----VELSSG----SILIDG-VDISKIG---L----HDLRSRISIIP 84 (221)
T ss_pred cceEEEECCCCEEEEECCCCCCHHHHHHHHHcC----CCCCCC----EEEECC-EEhHhCC---H----HHHhhhEEEEC
Confidence 345677889999999999999999999999999 999999 888887 4332111 1 12346799999
Q ss_pred cCCCCCCC-ccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccc
Q psy16304 267 QTPLGRPD-SRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN 345 (537)
Q Consensus 267 Q~~~l~~~-~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la 345 (537)
|++.++.. ..+.+.. .. ......+.+ .+........ ..-...|+.... ...+..||+||+||+ +++
T Consensus 85 q~~~l~~~tv~enl~~-~~--~~~~~~~~~---~~~~~~l~~~--~~~l~~~l~~~~-~~~~~~LS~G~~qr~----~la 151 (221)
T cd03244 85 QDPVLFSGTIRSNLDP-FG--EYSDEELWQ---ALERVGLKEF--VESLPGGLDTVV-EEGGENLSVGQRQLL----CLA 151 (221)
T ss_pred CCCccccchHHHHhCc-CC--CCCHHHHHH---HHHHhCcHHH--HHhccccccccc-ccCCCcCCHHHHHHH----HHH
Confidence 99875432 0110000 00 000000000 0000000000 000012222221 234788999999999 999
Q ss_pred cceeccCCceEEEEEe--cCchhhH--HHHHHHHHhc-CCEEEEEEeCCCcchhhhhh-hhhhcCCcEEEEe
Q psy16304 346 RARVEYGNKYEVFLYD--LGGSEDF--RTIWKQYLGT-VSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLI 411 (537)
Q Consensus 346 ~all~~~e~p~lllLD--T~Gl~~~--~~l~~~~~~~-~~~vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g 411 (537)
++++. + |+++++| |+|++.. ..+++.+.+. .+.+++++ +|+......++ ++++++|+++..+
T Consensus 152 ral~~-~--p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~-sh~~~~~~~~d~i~~l~~g~~~~~~ 219 (221)
T cd03244 152 RALLR-K--SKILVLDEATASVDPETDALIQKTIREAFKDCTVLTI-AHRLDTIIDSDRILVLDKGRVVEFD 219 (221)
T ss_pred HHHhc-C--CCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEE-eCCHHHHhhCCEEEEEECCeEEecC
Confidence 99996 5 8999999 9999333 2233333221 23566666 78877766555 8888999987654
No 298
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.72 E-value=6e-19 Score=178.53 Aligned_cols=209 Identities=13% Similarity=0.103 Sum_probs=129.2
Q ss_pred hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCcccc-----C
Q psy16304 152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLV-----P 226 (537)
Q Consensus 152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~-----P 226 (537)
++.++++.+.|+.... -.++++.+.+|++++|+|+||||||||+++|+|. .. |
T Consensus 24 ~l~~~~l~~~~~~~~i------------------l~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl----~~~~~~~~ 81 (271)
T PRK14238 24 VFDTQNLNLWYGEDHA------------------LKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRM----VELVPSVK 81 (271)
T ss_pred EEEEeeeEEEECCcce------------------eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh----ccCCCCCC
Confidence 4567888776653221 2335577889999999999999999999999998 66 6
Q ss_pred ceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCc-
Q psy16304 227 TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPL- 305 (537)
Q Consensus 227 t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~- 305 (537)
++| +|.++| ..+...+. . ....+..+++++|++.++.. +. .+ ++............
T Consensus 82 ~~G----~i~~~g-~~~~~~~~----~-~~~~~~~i~~v~q~~~~~~~-tv-----~e-------ni~~~~~~~~~~~~~ 138 (271)
T PRK14238 82 TTG----KILYRD-QNIFDKSY----S-VEELRTNVGMVFQKPNPFPK-SI-----YD-------NVTYGPKIHGIKDKK 138 (271)
T ss_pred Cce----eEEECC-EEcccccc----c-HHHHhhhEEEEecCCccccc-cH-----HH-------HHHHHHHhcCCCcHH
Confidence 999 999887 44321111 0 11223679999999875532 11 01 00000000000000
Q ss_pred --cccCCccEEEe----ccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHHH-----HH
Q psy16304 306 --VDFRSVPILVL----GLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRT-----IW 372 (537)
Q Consensus 306 --~~~~~~~L~ll----Gl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~-----l~ 372 (537)
.......+..+ ++... ....+..|||||+||+ +++++++. + |+++++| |+|++.... .+
T Consensus 139 ~~~~~~~~~l~~~~~~~~l~~~-~~~~~~~LSgGe~qrv----~laraL~~-~--p~lllLDEPt~~LD~~~~~~l~~~l 210 (271)
T PRK14238 139 TLDEIVEKSLRGAAIWDELKDR-LHDNAYGLSGGQQQRL----CIARCLAI-E--PDVILMDEPTSALDPISTLKVEELV 210 (271)
T ss_pred HHHHHHHHHHHHcCCcchHHHH-HhcCcccCCHHHHHHH----HHHHHHHc-C--CCEEEEeCCCCcCCHHHHHHHHHHH
Confidence 00000001111 11111 2344788999999999 99999996 5 8999999 999943322 22
Q ss_pred HHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEecccch
Q psy16304 373 KQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 373 ~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~nkdl 416 (537)
..+.+ +.+++++ +|+....... + ++++++|+++..+..+++
T Consensus 211 ~~~~~--~~tiiiv-sH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~ 253 (271)
T PRK14238 211 QELKK--DYSIIIV-THNMQQAARISDKTAFFLNGYVNEYDDTDKI 253 (271)
T ss_pred HHHHc--CCEEEEE-EcCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 33322 3566666 8998886653 3 899999999888877665
No 299
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.72 E-value=1e-18 Score=193.81 Aligned_cols=181 Identities=17% Similarity=0.104 Sum_probs=114.9
Q ss_pred ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304 187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS 266 (537)
Q Consensus 187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~ 266 (537)
.++++.+.+|++++|+|+||||||||+++|+|. ..|++| +|.+++.. .+++++
T Consensus 341 ~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~----~~p~~G----~i~~~~~~-------------------~i~~v~ 393 (556)
T PRK11819 341 DDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQ----EQPDSG----TIKIGETV-------------------KLAYVD 393 (556)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCe----EEEECCce-------------------EEEEEe
Confidence 345678889999999999999999999999999 899999 77764311 266777
Q ss_pred cCC-CCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccc
Q psy16304 267 QTP-LGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN 345 (537)
Q Consensus 267 Q~~-~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la 345 (537)
|+. .++...+. .+ ++...................+..+|+........+.+|||||+||+ +++
T Consensus 394 q~~~~~~~~~tv-----~e-------~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv----~la 457 (556)
T PRK11819 394 QSRDALDPNKTV-----WE-------EISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRL----HLA 457 (556)
T ss_pred CchhhcCCCCCH-----HH-------HHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHH----HHH
Confidence 764 22222111 00 00000000000000001112344567653223445899999999999 999
Q ss_pred cceeccCCceEEEEEe--cCchhhHHHH-HHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcC-CcEEEEeccc
Q psy16304 346 RARVEYGNKYEVFLYD--LGGSEDFRTI-WKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSC-NCQVYLISAK 414 (537)
Q Consensus 346 ~all~~~e~p~lllLD--T~Gl~~~~~l-~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~-G~ii~~g~nk 414 (537)
++++. + |++++|| |+|++..... +.+++....++++++ +||.......+ ++++++ |++....++.
T Consensus 458 ~al~~-~--p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tvi~v-tHd~~~~~~~~d~i~~l~~~g~~~~~~g~~ 528 (556)
T PRK11819 458 KTLKQ-G--GNVLLLDEPTNDLDVETLRALEEALLEFPGCAVVI-SHDRWFLDRIATHILAFEGDSQVEWFEGNF 528 (556)
T ss_pred HHHhc-C--CCEEEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEE-ECCHHHHHHhCCEEEEEECCCeEEEecCCH
Confidence 99996 5 8999999 9999443332 234444434566666 89998877644 778875 7776554444
No 300
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.72 E-value=1.1e-18 Score=171.71 Aligned_cols=174 Identities=17% Similarity=0.095 Sum_probs=106.8
Q ss_pred ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304 187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS 266 (537)
Q Consensus 187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~ 266 (537)
.++++.+.+|++++|+|+||||||||+++|+|. +.|++| ++.++| ..+..... ...+.+
T Consensus 39 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~----~~p~~G----~i~~~g-~~~~~~~~------------~~~~~~ 97 (224)
T cd03220 39 KDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGI----YPPDSG----TVTVRG-RVSSLLGL------------GGGFNP 97 (224)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCce----EEEECC-EEchhhcc------------cccCCC
Confidence 345677889999999999999999999999999 999999 888887 33211100 001100
Q ss_pred cCCCCCCCccceeeEEeecCcccccCCccccc--ccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccccc
Q psy16304 267 QTPLGRPDSRTCQVYLIMCGVHQVSGIPDELT--SATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF 344 (537)
Q Consensus 267 Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~--~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~l 344 (537)
..+. .+ ++..... ..............+..+|+.... ...+.+|||||+||+ ++
T Consensus 98 -------~~tv-----~e-------nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgG~~qrv----~l 153 (224)
T cd03220 98 -------ELTG-----RE-------NIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFI-DLPVKTYSSGMKARL----AF 153 (224)
T ss_pred -------CCcH-----HH-------HHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhh-hCChhhCCHHHHHHH----HH
Confidence 0000 00 0000000 000000000111222345655443 344789999999999 99
Q ss_pred ccceeccCCceEEEEEe--cCchhhH--HHHH---HHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEE
Q psy16304 345 NRARVEYGNKYEVFLYD--LGGSEDF--RTIW---KQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYL 410 (537)
Q Consensus 345 a~all~~~e~p~lllLD--T~Gl~~~--~~l~---~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~ 410 (537)
+++++. + |+++++| |+|++.. ..++ ..+.++ +.+++++ +|+....... + ++++++|+++..
T Consensus 154 aral~~-~--p~llllDEP~~gLD~~~~~~~~~~l~~~~~~-~~tiii~-sH~~~~~~~~~d~i~~l~~G~i~~~ 223 (224)
T cd03220 154 AIATAL-E--PDILLIDEVLAVGDAAFQEKCQRRLRELLKQ-GKTVILV-SHDPSSIKRLCDRALVLEKGKIRFD 223 (224)
T ss_pred HHHHhc-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEE-eCCHHHHHHhCCEEEEEECCEEEec
Confidence 999996 5 8999999 9999432 2333 344333 4567777 8998877643 3 888899987653
No 301
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.72 E-value=7.1e-19 Score=177.27 Aligned_cols=209 Identities=14% Similarity=0.119 Sum_probs=127.8
Q ss_pred hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCcccc-----C
Q psy16304 152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLV-----P 226 (537)
Q Consensus 152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~-----P 226 (537)
++.++++.+.|+.... -.++++.+.+|++++|+|+||||||||+++|+|. .. |
T Consensus 10 ~l~i~~v~~~~~~~~i------------------l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~~~~~~~ 67 (264)
T PRK14243 10 VLRTENLNVYYGSFLA------------------VKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRL----NDLIPGFR 67 (264)
T ss_pred EEEEeeeEEEECCEEE------------------eecceEEEcCCCEEEEECCCCCCHHHHHHHHHhh----hcccCCCC
Confidence 4567777776653221 2345677889999999999999999999999998 54 4
Q ss_pred ceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcC--C
Q psy16304 227 TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHL--P 304 (537)
Q Consensus 227 t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l--~ 304 (537)
+.| ++.++| ..+...+. .. ..++..+++++|++.++.. +. .+ ++..... .... .
T Consensus 68 ~~G----~i~~~g-~~i~~~~~-~~----~~~~~~i~~v~q~~~~~~~-tv-----~e-------nl~~~~~-~~~~~~~ 123 (264)
T PRK14243 68 VEG----KVTFHG-KNLYAPDV-DP----VEVRRRIGMVFQKPNPFPK-SI-----YD-------NIAYGAR-INGYKGD 123 (264)
T ss_pred Cce----EEEECC-EEcccccc-Ch----HHHhhhEEEEccCCccccc-cH-----HH-------HHHhhhh-hcCcchH
Confidence 789 888887 44321111 01 1224679999999765532 11 01 0000000 0000 0
Q ss_pred ccccCCccEEEeccCc---cCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-----HHHHHH
Q psy16304 305 LVDFRSVPILVLGLDN---AGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQ 374 (537)
Q Consensus 305 ~~~~~~~~L~llGl~~---~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~ 374 (537)
........+..+|+.. ......+.+|||||+||+ +++++++. + |+++++| |+|++.. ...+..
T Consensus 124 ~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv----~laral~~-~--p~lllLDEPt~~LD~~~~~~l~~~L~~ 196 (264)
T PRK14243 124 MDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRL----CIARAIAV-Q--PEVILMDEPCSALDPISTLRIEELMHE 196 (264)
T ss_pred HHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHH----HHHHHHhc-C--CCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 0000011111222211 012334778999999999 99999996 5 8999999 9998332 223334
Q ss_pred HHhcCCEEEEEEeCCCcchhhhhh--hhhhc---------CCcEEEEecccch
Q psy16304 375 YLGTVSQTLLVSHSLSGRPDDRCQ--VYLMS---------CNCQVYLISAKNL 416 (537)
Q Consensus 375 ~~~~~~~vIlVvdshd~~~~~~~~--i~ll~---------~G~ii~~g~nkdl 416 (537)
+.+ ..+++++ +|+.......+ +++++ +|+++..+...++
T Consensus 197 ~~~--~~tvi~v-tH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~~~~~~ 246 (264)
T PRK14243 197 LKE--QYTIIIV-THNMQQAARVSDMTAFFNVELTEGGGRYGYLVEFDRTEKI 246 (264)
T ss_pred Hhc--CCEEEEE-ecCHHHHHHhCCEEEEEecccccccccCceEEEeCCHHHH
Confidence 332 2566666 88888776544 77787 7999888877776
No 302
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.72 E-value=1e-18 Score=191.08 Aligned_cols=199 Identities=16% Similarity=0.096 Sum_probs=123.7
Q ss_pred cccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccC-ceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhc
Q psy16304 186 PTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVP-TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGT 264 (537)
Q Consensus 186 ~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~P-t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~ 264 (537)
-.++++.+.+|++++|+|+||||||||+++|+|. ..+ +.| +|.++| ..+ + .+.. . ..++..+++
T Consensus 276 l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~----~~~~~~G----~i~~~g-~~~---~-~~~~-~-~~~~~~i~~ 340 (490)
T PRK10938 276 LHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGD----HPQGYSN----DLTLFG-RRR---G-SGET-I-WDIKKHIGY 340 (490)
T ss_pred EeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCC----CCcccCC----eEEEec-ccC---C-CCCC-H-HHHHhhceE
Confidence 3467788999999999999999999999999998 665 689 888876 221 1 1111 1 112367899
Q ss_pred cccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCc--cccCCccEEEeccCc-cCccchhhhhcCCCceeeecc
Q psy16304 265 VSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPL--VDFRSVPILVLGLDN-AGKSSIIKRILGEPIISLVPT 341 (537)
Q Consensus 265 v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~--~~~~~~~L~llGl~~-~gKs~li~~LSgG~rqrvs~t 341 (537)
++|++.++......+ .+.. ................ .......+..+|+.. .. ...+.+|||||+||+
T Consensus 341 v~q~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~~LSgGq~qrv--- 410 (490)
T PRK10938 341 VSSSLHLDYRVSTSV---RNVI---LSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTA-DAPFHSLSWGQQRLA--- 410 (490)
T ss_pred ECHHHHhhcccCCcH---HHHH---HhccccccccccCCCHHHHHHHHHHHHHcCCchhhc-cCchhhCCHHHHHHH---
Confidence 999865322110000 0000 0000000000000000 111233444677765 33 455899999999999
Q ss_pred cccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhh--hh-hhhhcCCcEEEEe
Q psy16304 342 VGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDR--CQ-VYLMSCNCQVYLI 411 (537)
Q Consensus 342 i~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~--~~-i~ll~~G~ii~~g 411 (537)
+++++++. + |++++|| |+|++.. ..++.++.++..++++++ +||...... ++ ++++++|+++.+.
T Consensus 411 -~la~al~~-~--p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviiv-sHd~~~~~~~~~d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 411 -LIVRALVK-H--PTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFV-SHHAEDAPACITHRLEFVPDGDIYRYV 485 (490)
T ss_pred -HHHHHHhc-C--CCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEE-ecchhhhhhhhheeEEEecCCceEEee
Confidence 99999996 5 8999999 9999322 223334444444557777 899887764 33 8889999998876
Q ss_pred ccc
Q psy16304 412 SAK 414 (537)
Q Consensus 412 ~nk 414 (537)
.++
T Consensus 486 ~~~ 488 (490)
T PRK10938 486 QTK 488 (490)
T ss_pred ccc
Confidence 654
No 303
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.72 E-value=2.2e-18 Score=187.81 Aligned_cols=177 Identities=19% Similarity=0.159 Sum_probs=126.7
Q ss_pred cccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcc
Q psy16304 186 PTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTV 265 (537)
Q Consensus 186 ~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v 265 (537)
-+.+++.+.+|++||||||||+||||||++|.|. ..|.+| .|.++.++.+.++|+....... .
T Consensus 338 ~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~----~~~~~G----~v~~g~~v~igyf~Q~~~~l~~----~----- 400 (530)
T COG0488 338 LKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGE----LGPLSG----TVKVGETVKIGYFDQHRDELDP----D----- 400 (530)
T ss_pred ecCceEEecCCCEEEEECCCCCCHHHHHHHHhhh----cccCCc----eEEeCCceEEEEEEehhhhcCc----c-----
Confidence 3456788889999999999999999999999999 899999 9998877888888873211000 0
Q ss_pred ccCCCCCCCccceeeEEeecCcccccCCcccccccC-cCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccccc
Q psy16304 266 SQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSAT-HLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF 344 (537)
Q Consensus 266 ~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~-~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~l 344 (537)
. .+.+++.... ... .......+..+|+++..-.+.+..|||||+.|+ .+
T Consensus 401 ----------~---------------t~~d~l~~~~~~~~-e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl----~L 450 (530)
T COG0488 401 ----------K---------------TVLEELSEGFPDGD-EQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARL----LL 450 (530)
T ss_pred ----------C---------------cHHHHHHhhCcccc-HHHHHHHHHHcCCChHHHhCchhhcCHhHHHHH----HH
Confidence 0 0011110000 000 111122333566666655667999999999999 88
Q ss_pred ccceeccCCceEEEEEe--cCchhh-HHHHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEeccc
Q psy16304 345 NRARVEYGNKYEVFLYD--LGGSED-FRTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAK 414 (537)
Q Consensus 345 a~all~~~e~p~lllLD--T~Gl~~-~~~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nk 414 (537)
+..++. + |.+++|| |++++. ....++..+....|+++++ |||+.+.+.++ +|.++. .+..+.+.+
T Consensus 451 a~ll~~-~--pNvLiLDEPTNhLDi~s~~aLe~aL~~f~Gtvl~V-SHDr~Fl~~va~~i~~~~~-~~~~~~g~y 520 (530)
T COG0488 451 AKLLLQ-P--PNLLLLDEPTNHLDIESLEALEEALLDFEGTVLLV-SHDRYFLDRVATRIWLVED-KVEEFEGGY 520 (530)
T ss_pred HHHhcc-C--CCEEEEcCCCccCCHHHHHHHHHHHHhCCCeEEEE-eCCHHHHHhhcceEEEEcC-ceeEcCCCH
Confidence 888886 4 8999999 999954 4556688888999999999 99999999887 777777 655554444
No 304
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.72 E-value=9.3e-19 Score=180.09 Aligned_cols=224 Identities=13% Similarity=0.092 Sum_probs=130.8
Q ss_pred hhhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCcccc----
Q psy16304 150 GILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLV---- 225 (537)
Q Consensus 150 ~~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~---- 225 (537)
..++.++++.+.|+.... ...+++.+.+|++++|+|+||||||||+++|+|. ..
T Consensus 43 ~~~l~i~nl~~~~~~~~i------------------L~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl----~~~~~~ 100 (305)
T PRK14264 43 DAKLSVEDLDVYYGDDHA------------------LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRM----NDRIKA 100 (305)
T ss_pred CceEEEEEEEEEeCCeee------------------eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc----ccccCC
Confidence 445677788877654222 2345677889999999999999999999999998 65
Q ss_pred -CceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCC-ccceeeEEeecCcccccCCc-ccccccCc
Q psy16304 226 -PTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPD-SRTCQVYLIMCGVHQVSGIP-DELTSATH 302 (537)
Q Consensus 226 -Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~Ds~~~~~~~l~-~~l~~~~~ 302 (537)
|++| +|.++| ..+... +.. ...++..+++++|++.++.. ..+.+.+............. ..+. ...
T Consensus 101 ~p~~G----~I~i~g-~~i~~~---~~~--~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~-~~~ 169 (305)
T PRK14264 101 ARIDG----SVELDG-QDIYQD---GVN--LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLG-RDD 169 (305)
T ss_pred CCCce----EEEECC-EEcccc---ccc--HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccc-cCc
Confidence 6899 899887 443211 111 11233679999999775532 00101000000000000000 0000 000
Q ss_pred CC-ccccCCccEEEeccCc---cCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-----HHH
Q psy16304 303 LP-LVDFRSVPILVLGLDN---AGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTI 371 (537)
Q Consensus 303 l~-~~~~~~~~L~llGl~~---~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l 371 (537)
.. ........+..+|+.. ......+.+|||||+||+ +++++++. + |++++|| |+|++.. ..+
T Consensus 170 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv----~LAraL~~-~--p~lLLLDEPtsgLD~~~~~~l~~~ 242 (305)
T PRK14264 170 KDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRL----CIARCLAV-D--PEVILMDEPASALDPIATSKIEDL 242 (305)
T ss_pred hHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHH----HHHHHHhc-C--CCEEEEeCCcccCCHHHHHHHHHH
Confidence 00 0001111222334321 111334788999999999 99999996 5 8999999 9999332 223
Q ss_pred HHHHHhcCCEEEEEEeCCCcchhhhhh--h-hhhcCCcEEEEecccch
Q psy16304 372 WKQYLGTVSQTLLVSHSLSGRPDDRCQ--V-YLMSCNCQVYLISAKNL 416 (537)
Q Consensus 372 ~~~~~~~~~~vIlVvdshd~~~~~~~~--i-~ll~~G~ii~~g~nkdl 416 (537)
+..+.+ ..+++++ +|+.......+ + +++++|+++..+.+.++
T Consensus 243 L~~~~~--~~tiiiv-tH~~~~i~~~~d~i~~~l~~G~i~~~g~~~~~ 287 (305)
T PRK14264 243 IEELAE--EYTVVVV-THNMQQAARISDQTAVFLTGGELVEYDDTDKI 287 (305)
T ss_pred HHHHhc--CCEEEEE-EcCHHHHHHhcCEEEEEecCCEEEEeCCHHHH
Confidence 334333 2566666 89988876543 4 46799999988776655
No 305
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.72 E-value=5.7e-19 Score=176.67 Aligned_cols=211 Identities=13% Similarity=0.109 Sum_probs=129.5
Q ss_pred hhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCcccc--C--
Q psy16304 151 ILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLV--P-- 226 (537)
Q Consensus 151 ~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~--P-- 226 (537)
.++.++++.+.|++... -.++++.+.+|++++|+|+||||||||+++|+|. .. |
T Consensus 5 ~~i~~~~l~~~~~~~~~------------------l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~~~~~~ 62 (253)
T PRK14261 5 IILSTKNLNLWYGEKHA------------------LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRM----NDLIPGC 62 (253)
T ss_pred ceEEEeeeEEEECCeee------------------eeeeEEEECCCcEEEEECCCCCCHHHHHHHHhcc----ccCCCCC
Confidence 35677888887654322 2345677889999999999999999999999997 54 3
Q ss_pred -ceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcC--
Q psy16304 227 -TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHL-- 303 (537)
Q Consensus 227 -t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l-- 303 (537)
+.| ++.++| .++...+. . ....+..+++++|++.++.. +. .+ ++..........
T Consensus 63 ~~~G----~i~~~g-~~~~~~~~----~-~~~~~~~i~~~~q~~~~~~~-tv-----~e-------ni~~~~~~~~~~~~ 119 (253)
T PRK14261 63 RITG----DILYNG-ENIMDSGA----D-VVALRRKIGMVFQRPNPFPK-SI-----YE-------NVAYGPRIHGEKNK 119 (253)
T ss_pred Ccce----EEEECC-EEcccccc----c-hhhhhceEEEEecCCccCcc-cH-----HH-------HHHhhHHhcCCCCH
Confidence 589 898887 44432210 0 11123568999999875542 11 11 000000000000
Q ss_pred -CccccCCccEEEeccCc---cCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH-----HHH
Q psy16304 304 -PLVDFRSVPILVLGLDN---AGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR-----TIW 372 (537)
Q Consensus 304 -~~~~~~~~~L~llGl~~---~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~-----~l~ 372 (537)
.........+..+|+.. ......+..||+||+||+ +++++++. + |+++++| |+|++... ..+
T Consensus 120 ~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv----~laral~~-~--p~lllLDEP~~gLD~~~~~~l~~~l 192 (253)
T PRK14261 120 KTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRL----CIARTLAV-N--PEVILMDEPCSALDPIATAKIEDLI 192 (253)
T ss_pred HHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHH----HHHHHHhc-C--CCEEEEeCCcccCCHHHHHHHHHHH
Confidence 00000111111223211 012344788999999999 99999996 5 8999999 99993332 222
Q ss_pred HHHHhcCCEEEEEEeCCCcchhhh-hh-hhhhcCCcEEEEecccch
Q psy16304 373 KQYLGTVSQTLLVSHSLSGRPDDR-CQ-VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 373 ~~~~~~~~~vIlVvdshd~~~~~~-~~-i~ll~~G~ii~~g~nkdl 416 (537)
..+.+ ..+++++ +|+...... ++ ++++++|+++..+..+++
T Consensus 193 ~~~~~--~~tvii~-sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14261 193 EDLKK--EYTVIIV-THNMQQAARVSDYTGFMYLGKLIEFDKTTQI 235 (253)
T ss_pred HHHhh--CceEEEE-EcCHHHHHhhCCEEEEEECCEEEEcCCHHHH
Confidence 33322 3567777 888887754 33 889999999888777665
No 306
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.72 E-value=1.2e-18 Score=172.63 Aligned_cols=195 Identities=15% Similarity=0.112 Sum_probs=117.2
Q ss_pred cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304 188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ 267 (537)
Q Consensus 188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q 267 (537)
.+++.+.+|++++|+|+||||||||+++|+|. ..|++| ++.++| ..+... ... ..+..+++++|
T Consensus 21 ~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~----~~~~~G----~i~~~g-~~~~~~---~~~----~~~~~i~~~~q 84 (238)
T cd03249 21 GLSLTIPPGKTVALVGSSGCGKSTVVSLLERF----YDPTSG----EILLDG-VDIRDL---NLR----WLRSQIGLVSQ 84 (238)
T ss_pred ceEEEecCCCEEEEEeCCCCCHHHHHHHHhcc----CCCCCC----EEEECC-Eehhhc---CHH----HHHhhEEEECC
Confidence 45677889999999999999999999999999 999999 899887 433211 111 12356899999
Q ss_pred CCCCCCC-ccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEe--ccCccCccchhhhhcCCCceeeeccccc
Q psy16304 268 TPLGRPD-SRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVL--GLDNAGKSSIIKRILGEPIISLVPTVGF 344 (537)
Q Consensus 268 ~~~l~~~-~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~ll--Gl~~~gKs~li~~LSgG~rqrvs~ti~l 344 (537)
++.++.. ..+.+.+.. ... ......+.+... . ....+..+ |+.... ...+.+|||||+||+ ++
T Consensus 85 ~~~~~~~tv~e~l~~~~-~~~-~~~~~~~~~~~~-~------~~~~~~~l~~~~~~~~-~~~~~~LS~G~~qrv----~l 150 (238)
T cd03249 85 EPVLFDGTIAENIRYGK-PDA-TDEEVEEAAKKA-N------IHDFIMSLPDGYDTLV-GERGSQLSGGQKQRI----AI 150 (238)
T ss_pred chhhhhhhHHHHhhccC-CCC-CHHHHHHHHHHc-C------hHHHHHhhccccceee-ccCCccCCHHHHHHH----HH
Confidence 8764431 001000000 000 000000000000 0 00000011 222222 233678999999999 99
Q ss_pred ccceeccCCceEEEEEe--cCchhhH--HHHHHHHHhc-CCEEEEEEeCCCcchhhhhh-hhhhcCCcEEEEecccch
Q psy16304 345 NRARVEYGNKYEVFLYD--LGGSEDF--RTIWKQYLGT-VSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 345 a~all~~~e~p~lllLD--T~Gl~~~--~~l~~~~~~~-~~~vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g~nkdl 416 (537)
+++++. + |+++++| |+|++.. ..+++.+.+. .+.+++++ +|+......++ ++++++|+++..+...++
T Consensus 151 a~al~~-~--p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~-sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 224 (238)
T cd03249 151 ARALLR-N--PKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVI-AHRLSTIRNADLIAVLQNGQVVEQGTHDEL 224 (238)
T ss_pred HHHHhc-C--CCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEE-eCCHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 999996 5 8999999 9999322 2233332221 23456666 78877766544 889999998877665554
No 307
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.72 E-value=2.1e-18 Score=181.17 Aligned_cols=212 Identities=13% Similarity=0.085 Sum_probs=142.4
Q ss_pred hhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceee
Q psy16304 151 ILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF 230 (537)
Q Consensus 151 ~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~ 230 (537)
..+.++++.|.|+.-. +.+.++|.+.+|++-+|+|.||||||||+++|.|. +.|++|
T Consensus 3 ~~l~~~~itK~f~~~~------------------And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~----~~P~~G- 59 (501)
T COG3845 3 PALEMRGITKRFPGVV------------------ANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGL----YQPDSG- 59 (501)
T ss_pred ceEEEeccEEEcCCEE------------------ecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCc----ccCCcc-
Confidence 3456788888877332 23345678889999999999999999999999999 999999
Q ss_pred eeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCC
Q psy16304 231 NRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRS 310 (537)
Q Consensus 231 t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~ 310 (537)
+|.++| ..+.+.+- +...+..||+|+|++.+++..+..--.+...... ...+++.-....+..
T Consensus 60 ---eI~v~G-~~v~~~sP------~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~-------~~~~~~~~~~~~~i~ 122 (501)
T COG3845 60 ---EIRVDG-KEVRIKSP------RDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPS-------KGGLIDRRQARARIK 122 (501)
T ss_pred ---eEEECC-EEeccCCH------HHHHHcCCcEEeeccccccccchhhhhhhcCccc-------cccccCHHHHHHHHH
Confidence 999998 66655432 3445588999999999888766521111110000 000000000011112
Q ss_pred ccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCch-----hhHHHHHHHHHhcCCEEE
Q psy16304 311 VPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGS-----EDFRTIWKQYLGTVSQTL 383 (537)
Q Consensus 311 ~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl-----~~~~~l~~~~~~~~~~vI 383 (537)
......|++- ..+..+..||=|++||+ .+-+++.. + +++++|| |+-+ +.+...++.+.+++.++|
T Consensus 123 ~l~~~yGl~v-dp~~~V~dLsVG~qQRV----EIlKaLyr-~--a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi 194 (501)
T COG3845 123 ELSERYGLPV-DPDAKVADLSVGEQQRV----EILKALYR-G--ARLLILDEPTAVLTPQEADELFEILRRLAAEGKTII 194 (501)
T ss_pred HHHHHhCCCC-CccceeecCCcchhHHH----HHHHHHhc-C--CCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 2223455543 34566899999999999 99999996 5 8999999 6666 455555577766666555
Q ss_pred EEEeCCCcchhhhhh--hhhhcCCcEEEEec
Q psy16304 384 LVSHSLSGRPDDRCQ--VYLMSCNCQVYLIS 412 (537)
Q Consensus 384 lVvdshd~~~~~~~~--i~ll~~G~ii~~g~ 412 (537)
++ ||-..+....+ +-++..|+.+....
T Consensus 195 ~I--THKL~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 195 FI--THKLKEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred EE--eccHHHHHHhhCeeEEEeCCeEEeeec
Confidence 55 56666665544 89999999765444
No 308
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.72 E-value=1.4e-18 Score=171.77 Aligned_cols=195 Identities=14% Similarity=0.103 Sum_probs=117.9
Q ss_pred cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304 188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ 267 (537)
Q Consensus 188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q 267 (537)
.+++.+.+|++++|+|+||||||||+++|+|. ..|+.| +|.++| .++...+. ..++..+++++|
T Consensus 19 ~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl----~~~~~G----~v~~~g-~~~~~~~~-------~~~~~~i~~~~q 82 (236)
T cd03253 19 DVSFTIPAGKKVAIVGPSGSGKSTILRLLFRF----YDVSSG----SILIDG-QDIREVTL-------DSLRRAIGVVPQ 82 (236)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc----cCCCCC----EEEECC-EEhhhCCH-------HHHHhhEEEECC
Confidence 34577889999999999999999999999999 899999 888887 44322111 122367899999
Q ss_pred CCCCCCCccceeeEEeecCcccccCCccccc-ccCcCCccccCCccEEEe--ccCccCccchhhhhcCCCceeeeccccc
Q psy16304 268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELT-SATHLPLVDFRSVPILVL--GLDNAGKSSIIKRILGEPIISLVPTVGF 344 (537)
Q Consensus 268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~-~~~~l~~~~~~~~~L~ll--Gl~~~gKs~li~~LSgG~rqrvs~ti~l 344 (537)
++.++.. +..-.+.+. ... . ....+. ..... .....+..+ |+.... ...+..||+||++|+ ++
T Consensus 83 ~~~~~~~-tv~~nl~~~-~~~-~--~~~~~~~~~~~~----~l~~~~~~l~~~~~~~~-~~~~~~LS~G~~~rl----~l 148 (236)
T cd03253 83 DTVLFND-TIGYNIRYG-RPD-A--TDEEVIEAAKAA----QIHDKIMRFPDGYDTIV-GERGLKLSGGEKQRV----AI 148 (236)
T ss_pred CChhhcc-hHHHHHhhc-CCC-C--CHHHHHHHHHHc----CcHHHHHhccccccchh-hcCCCcCCHHHHHHH----HH
Confidence 9775532 110000000 000 0 000000 00000 000000111 222221 222678999999999 99
Q ss_pred ccceeccCCceEEEEEe--cCchhhH--HHHHHHHHhc-CCEEEEEEeCCCcchhhhhh-hhhhcCCcEEEEecccch
Q psy16304 345 NRARVEYGNKYEVFLYD--LGGSEDF--RTIWKQYLGT-VSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 345 a~all~~~e~p~lllLD--T~Gl~~~--~~l~~~~~~~-~~~vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g~nkdl 416 (537)
+++++. + |+++++| |+|++.. ..+++.+.+. .+.+++++ +|+......++ ++++++|+++..+...++
T Consensus 149 a~aL~~-~--p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~-sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~ 222 (236)
T cd03253 149 ARAILK-N--PPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVI-AHRLSTIVNADKIIVLKDGRIVERGTHEEL 222 (236)
T ss_pred HHHHhc-C--CCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEE-cCCHHHHHhCCEEEEEECCEEEeeCCHHHH
Confidence 999996 5 8999999 9999433 2233322221 14466666 78877766544 889999998876665554
No 309
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.72 E-value=2e-18 Score=169.65 Aligned_cols=187 Identities=16% Similarity=0.118 Sum_probs=116.4
Q ss_pred cCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304 192 FDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG 271 (537)
Q Consensus 192 ~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l 271 (537)
.+.+|++++|+|+||||||||+++|+|. ..|++| ++.++| .++ .. .+..+++++|++.+
T Consensus 2 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~----~~~~~G----~i~~~g-~~~--------~~----~~~~i~~v~q~~~~ 60 (223)
T TIGR03771 2 SADKGELLGLLGPNGAGKTTLLRAILGL----IPPAKG----TVKVAG-ASP--------GK----GWRHIGYVPQRHEF 60 (223)
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCC----CCCCCc----eEEECC-ccc--------hH----hhCcEEEecccccc
Confidence 3568999999999999999999999999 999999 888887 322 11 12568999998764
Q ss_pred CCCccceeeEEeecCcccccCCcccccccCcC--CccccCCccEEEeccCccCccchhhhhcCCCceeeeccccccccee
Q psy16304 272 RPDSRTCQVYLIMCGVHQVSGIPDELTSATHL--PLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARV 349 (537)
Q Consensus 272 ~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l--~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all 349 (537)
+..... .+.+.-. .. ........... .........+..+|+.... ...+.+||+||+||+ +++++++
T Consensus 61 ~~~~~~---tv~~~l~--~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv----~laral~ 129 (223)
T TIGR03771 61 AWDFPI---SVAHTVM--SG-RTGHIGWLRRPCVADFAAVRDALRRVGLTELA-DRPVGELSGGQRQRV----LVARALA 129 (223)
T ss_pred cCCCCc---cHHHHHH--hc-cccccccccCCcHHHHHHHHHHHHHhCCchhh-cCChhhCCHHHHHHH----HHHHHHh
Confidence 221110 0000000 00 00000000000 0001122233456665443 344889999999999 9999999
Q ss_pred ccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEecccch
Q psy16304 350 EYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 350 ~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~nkdl 416 (537)
. + |+++++| |+|++.. ..++..+.++ +.+++++ +|+....... + ++++ +|+++..+...++
T Consensus 130 ~-~--p~llilDEP~~~LD~~~~~~l~~~l~~~~~~-~~tvii~-sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~ 199 (223)
T TIGR03771 130 T-R--PSVLLLDEPFTGLDMPTQELLTELFIELAGA-GTAILMT-THDLAQAMATCDRVVLL-NGRVIADGTPQQL 199 (223)
T ss_pred c-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHHc-CCEEEEE-eCCHHHHHHhCCEEEEE-CCEEEeecCHHHh
Confidence 7 5 8999999 9999333 2233333333 4466666 7888876543 3 6667 7999887766655
No 310
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.72 E-value=3.1e-18 Score=157.50 Aligned_cols=220 Identities=15% Similarity=0.184 Sum_probs=145.6
Q ss_pred hhhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304 150 GILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG 229 (537)
Q Consensus 150 ~~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G 229 (537)
.++..+.+++|.|+...-..+ ++|...+|+..||||.+|+|||||+++|++- ..|+.|
T Consensus 4 ~PLL~V~~lsk~Yg~~~gc~~------------------vsF~l~PGeVLgiVGESGSGKtTLL~~is~r----l~p~~G 61 (258)
T COG4107 4 KPLLSVSGLSKLYGPGKGCRD------------------VSFDLYPGEVLGIVGESGSGKTTLLKCISGR----LTPDAG 61 (258)
T ss_pred CcceeehhhhhhhCCCcCccc------------------cceeecCCcEEEEEecCCCcHHhHHHHHhcc----cCCCCC
Confidence 457788999999988776655 3567889999999999999999999999999 999999
Q ss_pred eeeEEEEECC--cEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCccccccc-----Cc
Q psy16304 230 FNRARVEYGN--KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSA-----TH 302 (537)
Q Consensus 230 ~t~~~i~i~g--~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~-----~~ 302 (537)
++.+.. +....++... ..+.|.+.+.-.|+|.|++. +++-.-+.+. .++-+.+-.. ++
T Consensus 62 ----~v~Y~~r~~~~~dl~~ms-EaeRR~L~RTeWG~VhQnP~------DGLRm~VSAG----~NiGERlma~G~RHYG~ 126 (258)
T COG4107 62 ----TVTYRMRDGQPRDLYTMS-EAERRRLLRTEWGFVHQNPR------DGLRMQVSAG----GNIGERLMAIGARHYGN 126 (258)
T ss_pred ----eEEEEcCCCCchhHhhhc-hHHHHHHhhhccceeecCcc------ccceeeeccC----CccchhHHhhhhhhhhh
Confidence 776642 1222222221 12445677788999999986 2222222211 1111111111 11
Q ss_pred CCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCch-----hhHHHHHHHH
Q psy16304 303 LPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGS-----EDFRTIWKQY 375 (537)
Q Consensus 303 l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl-----~~~~~l~~~~ 375 (537)
+.. .+...+..+.++...-+..+.+|||||+||+ .+|+.++. . |.+.|+| |.|+ .....+++.+
T Consensus 127 iR~--~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRL----QiARnLVt-~--PrLvfMDEPTGGLDVSVQARLLDllrgL 197 (258)
T COG4107 127 IRA--EAQDWLEEVEIDLDRIDDLPRTFSGGMQQRL----QIARNLVT-R--PRLVFMDEPTGGLDVSVQARLLDLLRGL 197 (258)
T ss_pred HHH--HHHHHHHhcccCcccccCcccccchHHHHHH----HHHHHhcc-C--CceEEecCCCCCcchhhHHHHHHHHHHH
Confidence 111 1111222233333333556889999999999 99999997 5 7999999 8888 2333445666
Q ss_pred HhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccch
Q psy16304 376 LGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 376 ~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl 416 (537)
..+-+.+++++ +||.....-.. ..+|+.|.++..|-.+..
T Consensus 198 v~~l~la~viV-THDl~VarLla~rlmvmk~g~vve~GLTDrv 239 (258)
T COG4107 198 VRELGLAVVIV-THDLAVARLLADRLMVMKQGQVVESGLTDRV 239 (258)
T ss_pred HHhcCceEEEE-echhHHHHHhhhcceeecCCCEecccccccc
Confidence 66667677777 78887665443 888999999988876644
No 311
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.71 E-value=4e-18 Score=164.07 Aligned_cols=156 Identities=15% Similarity=0.210 Sum_probs=106.3
Q ss_pred ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccc--cCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhc
Q psy16304 187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISL--VPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGT 264 (537)
Q Consensus 187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~--~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~ 264 (537)
.++++.+.+|++++|+|+||+|||||+++|+|. . .|+.| ++.++| .++.. . .++..+++
T Consensus 26 ~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl----~~~~~~~G----~i~~~g-~~~~~------~----~~~~~i~~ 86 (194)
T cd03213 26 KNVSGKAKPGELTAIMGPSGAGKSTLLNALAGR----RTGLGVSG----EVLING-RPLDK------R----SFRKIIGY 86 (194)
T ss_pred ecceEEEcCCcEEEEECCCCCCHHHHHHHHhCC----CCCCCCce----EEEECC-EeCch------H----hhhheEEE
Confidence 345677889999999999999999999999999 8 99999 899887 43321 1 22356888
Q ss_pred cccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccccc
Q psy16304 265 VSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF 344 (537)
Q Consensus 265 v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~l 344 (537)
++|++.++...+. .+.+. .... ...||+||+||+ ++
T Consensus 87 ~~q~~~~~~~~t~----------------~~~i~------~~~~------------------~~~LS~G~~qrv----~l 122 (194)
T cd03213 87 VPQDDILHPTLTV----------------RETLM------FAAK------------------LRGLSGGERKRV----SI 122 (194)
T ss_pred ccCcccCCCCCcH----------------HHHHH------HHHH------------------hccCCHHHHHHH----HH
Confidence 8888664322111 11110 0000 016999999999 99
Q ss_pred ccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcc-hhhh-hh-hhhhcCCcEEEE
Q psy16304 345 NRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGR-PDDR-CQ-VYLMSCNCQVYL 410 (537)
Q Consensus 345 a~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~-~~~~-~~-i~ll~~G~ii~~ 410 (537)
+++++. + |+++++| |+|++.. ...++.+.++ ..+++++ +|+.. .... ++ ++++++|++...
T Consensus 123 aral~~-~--p~illlDEP~~~LD~~~~~~l~~~l~~~~~~-~~tiii~-sh~~~~~~~~~~d~v~~l~~G~i~~~ 193 (194)
T cd03213 123 ALELVS-N--PSLLFLDEPTSGLDSSSALQVMSLLRRLADT-GRTIICS-IHQPSSEIFELFDKLLLLSQGRVIYF 193 (194)
T ss_pred HHHHHc-C--CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEE-ecCchHHHHHhcCEEEEEeCCEEEec
Confidence 999997 5 8999999 9898322 2233343333 4466666 78875 3442 33 888899987643
No 312
>PLN03211 ABC transporter G-25; Provisional
Probab=99.71 E-value=3.7e-18 Score=192.16 Aligned_cols=196 Identities=15% Similarity=0.173 Sum_probs=125.8
Q ss_pred ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCc--eeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhc
Q psy16304 187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPT--VGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGT 264 (537)
Q Consensus 187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt--~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~ 264 (537)
.++++.+++|++++|+||||||||||+++|+|. ..|+ +| +|.++| ..+. .. ..+.+++
T Consensus 85 ~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~----~~~~~~sG----~I~inG-~~~~-------~~----~~~~i~y 144 (659)
T PLN03211 85 NGVTGMASPGEILAVLGPSGSGKSTLLNALAGR----IQGNNFTG----TILANN-RKPT-------KQ----ILKRTGF 144 (659)
T ss_pred eCCEEEEECCEEEEEECCCCCCHHHHHHHHhCC----CCCCceeE----EEEECC-EECc-------hh----hccceEE
Confidence 446677889999999999999999999999998 7774 89 899887 3321 11 1245899
Q ss_pred cccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCc---cccCCccEEEeccCccCc----cchhhhhcCCCcee
Q psy16304 265 VSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPL---VDFRSVPILVLGLDNAGK----SSIIKRILGEPIIS 337 (537)
Q Consensus 265 v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~---~~~~~~~L~llGl~~~gK----s~li~~LSgG~rqr 337 (537)
|+|+..+++..+..-.+.+. ..+..-..... ....+..+..+|+.+... +..+..|||||+||
T Consensus 145 v~Q~~~l~~~lTV~E~l~~~----------a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqR 214 (659)
T PLN03211 145 VTQDDILYPHLTVRETLVFC----------SLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKR 214 (659)
T ss_pred ECcccccCCcCCHHHHHHHH----------HHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhH
Confidence 99998766543321000000 00000000000 011223344566654322 23367899999999
Q ss_pred eecccccccceeccCCceEEEEEe--cCchhhHHH-----HHHHHHhcCCEEEEEEeCCCcch-h-hhhh-hhhhcCCcE
Q psy16304 338 LVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRT-----IWKQYLGTVSQTLLVSHSLSGRP-D-DRCQ-VYLMSCNCQ 407 (537)
Q Consensus 338 vs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~-----l~~~~~~~~~~vIlVvdshd~~~-~-~~~~-i~ll~~G~i 407 (537)
+ +++++++. + |++++|| |+|++.... .++++.++ +.+++++ +|+... . +..+ ++++++|++
T Consensus 215 v----~ia~aL~~-~--P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~-g~TvI~~-sH~~~~~i~~~~D~iilL~~G~i 285 (659)
T PLN03211 215 V----SIAHEMLI-N--PSLLILDEPTSGLDATAAYRLVLTLGSLAQK-GKTIVTS-MHQPSSRVYQMFDSVLVLSEGRC 285 (659)
T ss_pred H----HHHHHHHh-C--CCEEEEeCCCCCcCHHHHHHHHHHHHHHHhC-CCEEEEE-ecCCCHHHHHhhceEEEecCCcE
Confidence 9 99999997 5 8999999 999944333 22333333 4456666 788763 3 3334 888999999
Q ss_pred EEEecccchhhhhc
Q psy16304 408 VYLISAKNLSNGFK 421 (537)
Q Consensus 408 i~~g~nkdl~~~~~ 421 (537)
+..|...++...+.
T Consensus 286 v~~G~~~~~~~~f~ 299 (659)
T PLN03211 286 LFFGKGSDAMAYFE 299 (659)
T ss_pred EEECCHHHHHHHHH
Confidence 99988877655443
No 313
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=8.1e-19 Score=176.28 Aligned_cols=212 Identities=14% Similarity=0.101 Sum_probs=128.7
Q ss_pred hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccC-----
Q psy16304 152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVP----- 226 (537)
Q Consensus 152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~P----- 226 (537)
++.++++.+.|+.... -.++++.+.+|++++|+|+||||||||+++|+|. ..|
T Consensus 7 ~l~~~~l~~~~~~~~i------------------l~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl----~~~~~~~~ 64 (259)
T PRK14260 7 AIKVKDLSFYYNTSKA------------------IEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRI----SELEGPVK 64 (259)
T ss_pred eEEEEEEEEEECCeEe------------------ecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhh----cCcccCCc
Confidence 4567777776653221 2334677889999999999999999999999998 664
Q ss_pred ceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccc---cCcC
Q psy16304 227 TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTS---ATHL 303 (537)
Q Consensus 227 t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~---~~~l 303 (537)
+.| ++.++| .++...+. ....++..+++++|++.++. .+. .+ ++...... ....
T Consensus 65 ~~G----~i~~~g-~~i~~~~~-----~~~~~~~~i~~v~q~~~l~~-~tv-----~e-------nl~~~~~~~~~~~~~ 121 (259)
T PRK14260 65 VEG----VVDFFG-QNIYDPRI-----NINRLRRQIGMVFQRPNPFP-MSI-----YE-------NVAYGVRISAKLPQA 121 (259)
T ss_pred cce----EEEECC-Eecccccc-----chHhhhhheEEEecccccCC-ccH-----HH-------HHHHHHHHhcCCCHH
Confidence 589 899887 44321110 11223467999999987553 221 01 00000000 0000
Q ss_pred CccccCCccEEEeccCc---cCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH--HHHHHHHH
Q psy16304 304 PLVDFRSVPILVLGLDN---AGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIWKQYL 376 (537)
Q Consensus 304 ~~~~~~~~~L~llGl~~---~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l~~~~~ 376 (537)
.........+..+|+.. ......+..||+||+||+ +++++++. + |+++++| |+|++.. ..+++.+.
T Consensus 122 ~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv----~laral~~-~--p~lllLDEPt~~LD~~~~~~l~~~l~ 194 (259)
T PRK14260 122 DLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRL----CIARALAI-K--PKVLLMDEPCSALDPIATMKVEELIH 194 (259)
T ss_pred HHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHH----HHHHHHhc-C--CCEEEEcCCCccCCHHHHHHHHHHHH
Confidence 00000111122233311 112344789999999999 99999996 4 8999999 9999433 22223222
Q ss_pred hc-CCEEEEEEeCCCcchhhhhh--hhhhc-----CCcEEEEecccch
Q psy16304 377 GT-VSQTLLVSHSLSGRPDDRCQ--VYLMS-----CNCQVYLISAKNL 416 (537)
Q Consensus 377 ~~-~~~vIlVvdshd~~~~~~~~--i~ll~-----~G~ii~~g~nkdl 416 (537)
+. ...+++++ +|+..+....+ +++++ +|+++..+.++++
T Consensus 195 ~~~~~~tiii~-tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~ 241 (259)
T PRK14260 195 SLRSELTIAIV-THNMQQATRVSDFTAFFSTDESRIGQMVEFGVTTQI 241 (259)
T ss_pred HHhcCCEEEEE-eCCHHHHHHhcCeEEEEeccCCCCceEEEeCCHHHH
Confidence 11 13566666 89988876544 77776 5999888877766
No 314
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.71 E-value=5e-18 Score=160.00 Aligned_cols=146 Identities=16% Similarity=0.182 Sum_probs=99.6
Q ss_pred cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304 188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ 267 (537)
Q Consensus 188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q 267 (537)
++++.+.+|++++|+|+||+|||||+++|+|. ..|+.| ++.++| ..+..++ ...++..+++++|
T Consensus 20 ~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~----~~~~~G----~i~~~g-~~~~~~~-------~~~~~~~i~~~~~ 83 (171)
T cd03228 20 DVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRL----YDPTSG----EILIDG-VDLRDLD-------LESLRKNIAYVPQ 83 (171)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHHcC----CCCCCC----EEEECC-EEhhhcC-------HHHHHhhEEEEcC
Confidence 45677889999999999999999999999999 999999 888887 4332111 1122356788777
Q ss_pred CCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccc
Q psy16304 268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA 347 (537)
Q Consensus 268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~a 347 (537)
++.++.. ...+++ ||+||+||+ +++++
T Consensus 84 ~~~~~~~-----------------------t~~e~l--------------------------LS~G~~~rl----~la~a 110 (171)
T cd03228 84 DPFLFSG-----------------------TIRENI--------------------------LSGGQRQRI----AIARA 110 (171)
T ss_pred Cchhccc-----------------------hHHHHh--------------------------hCHHHHHHH----HHHHH
Confidence 7542210 000000 999999999 99999
Q ss_pred eeccCCceEEEEEe--cCchhhH--HHHHHHHHhc-CCEEEEEEeCCCcchhhhhh-hhhhcCCc
Q psy16304 348 RVEYGNKYEVFLYD--LGGSEDF--RTIWKQYLGT-VSQTLLVSHSLSGRPDDRCQ-VYLMSCNC 406 (537)
Q Consensus 348 ll~~~e~p~lllLD--T~Gl~~~--~~l~~~~~~~-~~~vIlVvdshd~~~~~~~~-i~ll~~G~ 406 (537)
++. + |+++++| |+|++.. ..+++.+.+. .+.+++++ +|+......++ ++++++|+
T Consensus 111 l~~-~--p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~-sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 111 LLR-D--PPILILDEATSALDPETEALILEALRALAKGKTVIVI-AHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred Hhc-C--CCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEE-ecCHHHHHhCCEEEEEcCCC
Confidence 996 5 8999999 9999422 2233322221 13566666 78877766544 66666653
No 315
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.71 E-value=3.1e-18 Score=170.92 Aligned_cols=162 Identities=15% Similarity=0.123 Sum_probs=102.5
Q ss_pred ccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCC
Q psy16304 191 LFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL 270 (537)
Q Consensus 191 l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~ 270 (537)
+.+.+|++++|+|+||||||||+++|+|. ..|++| ++.++| .. +++++|++.
T Consensus 20 ~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~----~~p~~G----~i~~~g-~~-------------------i~~~~q~~~ 71 (246)
T cd03237 20 GSISESEVIGILGPNGIGKTTFIKMLAGV----LKPDEG----DIEIEL-DT-------------------VSYKPQYIK 71 (246)
T ss_pred CCcCCCCEEEEECCCCCCHHHHHHHHhCC----CcCCCC----eEEECC-ce-------------------EEEeccccc
Confidence 44668999999999999999999999999 999999 888776 22 444455433
Q ss_pred CCCCccceeeEEeecCcccccCCccccccc-CcC-CccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccce
Q psy16304 271 GRPDSRTCQVYLIMCGVHQVSGIPDELTSA-THL-PLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRAR 348 (537)
Q Consensus 271 l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~-~~l-~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~al 348 (537)
.....+. .+.+... ... .........+..+|+.... ...+.+|||||+||+ ++++++
T Consensus 72 ~~~~~tv----------------~e~l~~~~~~~~~~~~~~~~~l~~l~l~~~~-~~~~~~LSgGe~qrv----~iaraL 130 (246)
T cd03237 72 ADYEGTV----------------RDLLSSITKDFYTHPYFKTEIAKPLQIEQIL-DREVPELSGGELQRV----AIAACL 130 (246)
T ss_pred CCCCCCH----------------HHHHHHHhhhccccHHHHHHHHHHcCCHHHh-hCChhhCCHHHHHHH----HHHHHH
Confidence 2111110 0000000 000 0000011223355665443 344889999999999 999999
Q ss_pred eccCCceEEEEEe--cCchhhH--H---HHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCC
Q psy16304 349 VEYGNKYEVFLYD--LGGSEDF--R---TIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCN 405 (537)
Q Consensus 349 l~~~e~p~lllLD--T~Gl~~~--~---~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G 405 (537)
+. + |+++++| |++++.. . .++..+.+..+.+++++ +|+.......+ +++++.+
T Consensus 131 ~~-~--p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiv-sHd~~~~~~~~d~i~~l~~~ 192 (246)
T cd03237 131 SK-D--ADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVV-EHDIIMIDYLADRLIVFEGE 192 (246)
T ss_pred hc-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhCCEEEEEcCC
Confidence 96 4 8999999 9999332 2 23334433334567777 89988777543 6777543
No 316
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.71 E-value=1.1e-18 Score=210.64 Aligned_cols=258 Identities=13% Similarity=0.107 Sum_probs=148.6
Q ss_pred HHhhhcccccccccccccccCccccccccCCCCCCchhHHHHHHHHHHHHhhhcccccCCCcccCCCCCCCCCcchhhcc
Q psy16304 100 LRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAPTFEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDDPAPTFENFL 179 (537)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~~~~~~~~~~~~ 179 (537)
..+...+..++.+..+.++++++++.+..++.+...... - ...-+.++++.+.|+++. +
T Consensus 339 ~~i~~~~~~~~~a~~a~~ri~~ii~~~~~~~~~~~~~~~------~---~~~~I~~~nVsf~Y~~~~---~--------- 397 (1466)
T PTZ00265 339 TIILPNITEYMKSLEATNSLYEIINRKPLVENNDDGKKL------K---DIKKIQFKNVRFHYDTRK---D--------- 397 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCccC------C---CCCcEEEEEEEEEcCCCC---C---------
Confidence 344556677788888889999888755443321111111 0 011356788888776431 1
Q ss_pred cccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHH
Q psy16304 180 DLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWK 259 (537)
Q Consensus 180 ~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~ 259 (537)
..+-.++++.+++|++++|||+||||||||+++|+|. +.|+.| +|.++|+.++..++. ..++
T Consensus 398 ---~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl----~~p~~G----~I~i~~g~~i~~~~~-------~~lr 459 (1466)
T PTZ00265 398 ---VEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERL----YDPTEG----DIIINDSHNLKDINL-------KWWR 459 (1466)
T ss_pred ---CceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHh----ccCCCC----eEEEeCCcchhhCCH-------HHHH
Confidence 0123456788889999999999999999999999999 999999 999854344432221 2345
Q ss_pred hhhhccccCCCCCCC-ccceeeEEee-c-C--------------cccc---------------------cCCcccccccC
Q psy16304 260 QYLGTVSQTPLGRPD-SRTCQVYLIM-C-G--------------VHQV---------------------SGIPDELTSAT 301 (537)
Q Consensus 260 ~~i~~v~Q~~~l~~~-~~~~il~v~D-s-~--------------~~~~---------------------~~l~~~l~~~~ 301 (537)
+.+++|+|++.++.. ..+.+.+... . . .... ....+.+....
T Consensus 460 ~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 539 (1466)
T PTZ00265 460 SKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRK 539 (1466)
T ss_pred HhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhccc
Confidence 789999999987753 2222221100 0 0 0000 00000000000
Q ss_pred ---cCCccccCCccEEEecc-------CccC---ccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchh
Q psy16304 302 ---HLPLVDFRSVPILVLGL-------DNAG---KSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSE 366 (537)
Q Consensus 302 ---~l~~~~~~~~~L~llGl-------~~~g---Ks~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~ 366 (537)
.... .+....+..+|+ ++.- -......|||||+||+ ++||+++. + |++++|| |++++
T Consensus 540 ~~~~~~~-~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRi----aIARAll~-~--P~ILlLDEpTSaLD 611 (1466)
T PTZ00265 540 NYQTIKD-SEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRI----SIARAIIR-N--PKILILDEATSSLD 611 (1466)
T ss_pred ccccCCH-HHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHH----HHHHHHhc-C--CCEEEEeCcccccC
Confidence 0000 000000001111 1100 0112567999999999 99999996 5 8999999 99994
Q ss_pred hHHH--HHHHHHh---cCCEEEEEEeCCCcchhhhhh-hhhhcCC
Q psy16304 367 DFRT--IWKQYLG---TVSQTLLVSHSLSGRPDDRCQ-VYLMSCN 405 (537)
Q Consensus 367 ~~~~--l~~~~~~---~~~~vIlVvdshd~~~~~~~~-i~ll~~G 405 (537)
...+ +.+.+.+ ..+.+++++ +|+......++ ++++++|
T Consensus 612 ~~se~~i~~~L~~~~~~~g~TvIiI-sHrls~i~~aD~Iivl~~g 655 (1466)
T PTZ00265 612 NKSEYLVQKTINNLKGNENRITIII-AHRLSTIRYANTIFVLSNR 655 (1466)
T ss_pred HHHHHHHHHHHHHHhhcCCCEEEEE-eCCHHHHHhCCEEEEEeCC
Confidence 3332 2233322 224566677 78888776555 8888775
No 317
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.71 E-value=4.2e-18 Score=186.26 Aligned_cols=202 Identities=11% Similarity=0.056 Sum_probs=126.5
Q ss_pred ccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhc
Q psy16304 185 LPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGT 264 (537)
Q Consensus 185 ~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~ 264 (537)
+-.++++.+.+|++++|+|+||||||||+++|+|. ..|++| +|.++| .++.. . ......+..+++
T Consensus 263 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl----~~p~~G----~i~~~g-~~i~~-----~-~~~~~~~~~i~~ 327 (491)
T PRK10982 263 SIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGI----REKSAG----TITLHG-KKINN-----H-NANEAINHGFAL 327 (491)
T ss_pred ccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCC----CcCCcc----EEEECC-EECCC-----C-CHHHHHHCCCEE
Confidence 34567888999999999999999999999999999 899999 898887 43321 1 111223456889
Q ss_pred cccCCC---CCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecc
Q psy16304 265 VSQTPL---GRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPT 341 (537)
Q Consensus 265 v~Q~~~---l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~t 341 (537)
++|+.. ++...+..-..+.+ ........................+..+|+........+.+|||||+||+
T Consensus 328 ~~q~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv--- 400 (491)
T PRK10982 328 VTEERRSTGIYAYLDIGFNSLIS----NIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKV--- 400 (491)
T ss_pred cCCchhhCCcccCCcHHHheehh----hhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHH---
Confidence 998753 23322210000000 00000000000000000011122344556642223556899999999999
Q ss_pred cccccceeccCCceEEEEEe--cCchhh--HHHH---HHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEec
Q psy16304 342 VGFNRARVEYGNKYEVFLYD--LGGSED--FRTI---WKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLIS 412 (537)
Q Consensus 342 i~la~all~~~e~p~lllLD--T~Gl~~--~~~l---~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~ 412 (537)
+++++++. + |++++|| |+|++. ...+ +..+.+ .+.+++++ +||......++ ++++++|+++..+.
T Consensus 401 -~la~al~~-~--p~illLDEPt~gLD~~~~~~~~~~l~~l~~-~~~tvi~v-sHd~~~~~~~~d~v~~l~~g~i~~~~~ 474 (491)
T PRK10982 401 -IIGRWLLT-Q--PEILMLDEPTRGIDVGAKFEIYQLIAELAK-KDKGIIII-SSEMPELLGITDRILVMSNGLVAGIVD 474 (491)
T ss_pred -HHHHHHhc-C--CCEEEEcCCCcccChhHHHHHHHHHHHHHH-CCCEEEEE-CCChHHHHhhCCEEEEEECCEEEEEEc
Confidence 99999996 5 8999999 999932 2223 334433 35677777 89988887654 88999999987665
Q ss_pred cc
Q psy16304 413 AK 414 (537)
Q Consensus 413 nk 414 (537)
.+
T Consensus 475 ~~ 476 (491)
T PRK10982 475 TK 476 (491)
T ss_pred cc
Confidence 54
No 318
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.71 E-value=4e-18 Score=165.43 Aligned_cols=175 Identities=16% Similarity=0.065 Sum_probs=113.4
Q ss_pred cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304 188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ 267 (537)
Q Consensus 188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q 267 (537)
.+++.+.+|++++|+|+||+|||||+++|+|. +.|+.| ++.++| ..+... . ...++..+++++|
T Consensus 26 ~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl----~~~~~G----~i~~~g-~~~~~~-----~--~~~~~~~i~~v~q 89 (207)
T cd03369 26 NVSFKVKAGEKIGIVGRTGAGKSTLILALFRF----LEAEEG----KIEIDG-IDISTI-----P--LEDLRSSLTIIPQ 89 (207)
T ss_pred CceEEECCCCEEEEECCCCCCHHHHHHHHhcc----cCCCCC----eEEECC-EEhHHC-----C--HHHHHhhEEEEec
Confidence 45677889999999999999999999999999 999999 898887 433211 1 1123367999999
Q ss_pred CCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccc
Q psy16304 268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA 347 (537)
Q Consensus 268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~a 347 (537)
++.++.. +. .+.+........ ... ...+++ ...+..||+|++||+ +++++
T Consensus 90 ~~~~~~~-tv----------------~~~l~~~~~~~~-~~~---~~~l~~-----~~~~~~LS~G~~qrv----~lara 139 (207)
T cd03369 90 DPTLFSG-TI----------------RSNLDPFDEYSD-EEI---YGALRV-----SEGGLNLSQGQRQLL----CLARA 139 (207)
T ss_pred CCcccCc-cH----------------HHHhcccCCCCH-HHH---HHHhhc-----cCCCCcCCHHHHHHH----HHHHH
Confidence 9865432 11 000000000000 000 001111 233778999999999 99999
Q ss_pred eeccCCceEEEEEe--cCchhhH--HHHHHHHHhc-CCEEEEEEeCCCcchhhhhh-hhhhcCCcEEEEec
Q psy16304 348 RVEYGNKYEVFLYD--LGGSEDF--RTIWKQYLGT-VSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLIS 412 (537)
Q Consensus 348 ll~~~e~p~lllLD--T~Gl~~~--~~l~~~~~~~-~~~vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g~ 412 (537)
++. + |+++++| |+|++.. ..+++.+.+. .+.+++++ +|+......++ ++++++|++...++
T Consensus 140 l~~-~--p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~-th~~~~~~~~d~v~~l~~g~i~~~g~ 206 (207)
T cd03369 140 LLK-R--PRVLVLDEATASIDYATDALIQKTIREEFTNSTILTI-AHRLRTIIDYDKILVMDAGEVKEYDH 206 (207)
T ss_pred Hhh-C--CCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEE-eCCHHHHhhCCEEEEEECCEEEecCC
Confidence 996 5 8999999 9998332 2233332221 23456666 78777665544 88899999876654
No 319
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.71 E-value=3.1e-18 Score=166.18 Aligned_cols=213 Identities=15% Similarity=0.104 Sum_probs=133.2
Q ss_pred hhhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304 150 GILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG 229 (537)
Q Consensus 150 ~~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G 229 (537)
+.++.++++...|+++.+..+ ++.++++|++.+|+|+||||||||+++++|. ..|++|
T Consensus 29 ~~li~l~~v~v~r~gk~iL~~------------------isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~----~~pssg 86 (257)
T COG1119 29 EPLIELKNVSVRRNGKKILGD------------------LSWQVNPGEHWAIVGPNGAGKTTLLSLLTGE----HPPSSG 86 (257)
T ss_pred cceEEecceEEEECCEeeccc------------------cceeecCCCcEEEECCCCCCHHHHHHHHhcc----cCCCCC
Confidence 456777888887777666554 3456789999999999999999999999999 999999
Q ss_pred eeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCC-CCCccceeeEEee---cCcccccCCcccccccCcCCc
Q psy16304 230 FNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG-RPDSRTCQVYLIM---CGVHQVSGIPDELTSATHLPL 305 (537)
Q Consensus 230 ~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l-~~~~~~~il~v~D---s~~~~~~~l~~~l~~~~~l~~ 305 (537)
.+.+.| ..+.-.++. .+. ++.+|+|+-.... +.....+.-.+.. ++...+.+ .++. ..
T Consensus 87 ----~~~~~G-~~~G~~~~~--~el----rk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~---~~~~----~~ 148 (257)
T COG1119 87 ----DVTLLG-RRFGKGETI--FEL----RKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQE---DLTA----ED 148 (257)
T ss_pred ----ceeeee-eeccCCcch--HHH----HHHhCccCHHHHhhcccccccceeeeeccccccccccc---CCCH----HH
Confidence 777775 444333331 233 3778887654321 1111111111111 11111110 0000 01
Q ss_pred cccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH-----HHHHHHHhc
Q psy16304 306 VDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR-----TIWKQYLGT 378 (537)
Q Consensus 306 ~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~-----~l~~~~~~~ 378 (537)
..++...+..+|..... ++...+||.||++++ -+|||++. + |++++|| ++|++... ..+.++...
T Consensus 149 ~~~a~~lle~~g~~~la-~r~~~~LS~Ge~rrv----LiaRALv~-~--P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~ 220 (257)
T COG1119 149 LAAAQWLLELLGAKHLA-DRPFGSLSQGEQRRV----LIARALVK-D--PELLILDEPAQGLDLIAREQLLNRLEELAAS 220 (257)
T ss_pred HHHHHHHHHHcchhhhc-cCchhhcCHhHHHHH----HHHHHHhc-C--CCEEEecCccccCChHHHHHHHHHHHHHhcC
Confidence 12334455678877654 566899999999999 99999997 5 8999999 89984332 233344333
Q ss_pred -CCEEEEEEeCCCcchh-hhhh-hhhhcCCcEEEEe
Q psy16304 379 -VSQTLLVSHSLSGRPD-DRCQ-VYLMSCNCQVYLI 411 (537)
Q Consensus 379 -~~~vIlVvdshd~~~~-~~~~-i~ll~~G~ii~~g 411 (537)
...+++++ +|..++. .+.. ..++++|+++..+
T Consensus 221 ~~~~~ll~V-tHh~eEi~~~~th~lll~~g~v~~~g 255 (257)
T COG1119 221 PGAPALLFV-THHAEEIPPCFTHRLLLKEGEVVAQG 255 (257)
T ss_pred CCCceEEEE-EcchhhcccccceEEEeeCCceeecc
Confidence 23355555 4544444 4444 7888899987654
No 320
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=8.7e-19 Score=180.27 Aligned_cols=273 Identities=15% Similarity=0.084 Sum_probs=173.6
Q ss_pred eeeeccchhh-hhHHHHHhhhcccccccccccccccCccccccccCCCCC--CchhHHHHHHHHHHHHhhhcccccCCCc
Q psy16304 85 DVVLYNMYKA-EIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPA--PTFEVCIVSLLVHLMRGILMGIQNVPNF 161 (537)
Q Consensus 85 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~~~~~~~l~~~m~~~li~~~~l~k~ 161 (537)
|+|.-|-|.- -.-|+.-++....++.++...+++++.++..+..+.+.. ||+.. .+.-.+...++
T Consensus 201 D~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~~~v~d~pda~~L~~---------~~~g~v~F~~V--- 268 (497)
T COG5265 201 DLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVSDAPDAPPLWP---------VRLGAVAFINV--- 268 (497)
T ss_pred hHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccchhhccCCCCccccc---------cccceEEEEEE---
Confidence 4444444432 245888888888999999999999998888776655542 33321 01111222222
Q ss_pred ccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcE
Q psy16304 162 QTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKY 241 (537)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~ 241 (537)
.+.++|..+ .-..+++.+..|.++++||++|+||||+++.|.+. +++++| .|.++| .
T Consensus 269 ----~F~y~~~r~----------iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRF----yD~~sG----~I~id~-q 325 (497)
T COG5265 269 ----SFAYDPRRP----------ILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRF----YDVNSG----SITIDG-Q 325 (497)
T ss_pred ----Eeeccccch----------hhcCccccccCccEEEEEeCCCCcHHHHHHHHHHH----hCCcCc----eEEEcc-h
Confidence 455555522 33456778889999999999999999999999999 999999 999887 4
Q ss_pred EEEEeecCCCchhhHHHHhhhhccccCCCCCCC-ccceeeEEee-cCcccccCC---cccccccCcCCccccCCccEEEe
Q psy16304 242 EVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPD-SRTCQVYLIM-CGVHQVSGI---PDELTSATHLPLVDFRSVPILVL 316 (537)
Q Consensus 242 ~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~D-s~~~~~~~l---~~~l~~~~~l~~~~~~~~~L~ll 316 (537)
++....+ ...++.+|.|||+..++.+ ....+-+.-. +..++.... ...-..+..++.... ..+
T Consensus 326 dir~vtq-------~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~-----t~V 393 (497)
T COG5265 326 DIRDVTQ-------QSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYD-----TGV 393 (497)
T ss_pred hHHHhHH-------HHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhh-----ccc
Confidence 3332222 3445889999999887754 2222211111 111111000 000111111111111 144
Q ss_pred ccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHHH--HHHHHHhc-CCEEEEEEeCCCc
Q psy16304 317 GLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRT--IWKQYLGT-VSQTLLVSHSLSG 391 (537)
Q Consensus 317 Gl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~--l~~~~~~~-~~~vIlVvdshd~ 391 (537)
|..+. .||||++||+ ++|++++. + |+++++| |+.++...+ +...+.+- .+-+.+|+ .|..
T Consensus 394 gergl-------klSggekqrv----aiar~ilk--~-p~il~~deatsaldt~te~~iq~~l~~~~~~rttlvi-ahrl 458 (497)
T COG5265 394 GERGL-------KLSGGEKQRV----AIARTILK--N-PPILILDEATSALDTHTEQAIQAALREVSAGRTTLVI-AHRL 458 (497)
T ss_pred chhee-------eccCchHHHH----HHHHHHhc--C-CCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEE-eehh
Confidence 44433 3999999999 99999995 4 8999999 888844333 22333222 23355566 7888
Q ss_pred chhhhhh-hhhhcCCcEEEEecccchhhh
Q psy16304 392 RPDDRCQ-VYLMSCNCQVYLISAKNLSNG 419 (537)
Q Consensus 392 ~~~~~~~-i~ll~~G~ii~~g~nkdl~~~ 419 (537)
.+.-..+ ++++++|+++..|++++|...
T Consensus 459 sti~~adeiivl~~g~i~erg~h~~ll~~ 487 (497)
T COG5265 459 STIIDADEIIVLDNGRIVERGTHEELLAA 487 (497)
T ss_pred hhccCCceEEEeeCCEEEecCcHHHHHHc
Confidence 8887777 999999999999999988543
No 321
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.71 E-value=1.6e-18 Score=179.89 Aligned_cols=177 Identities=14% Similarity=0.139 Sum_probs=118.5
Q ss_pred EEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceee
Q psy16304 201 VLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQV 280 (537)
Q Consensus 201 LVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il 280 (537)
|+|+||||||||+++|+|. ..|++| +|.++| .++. .... .++.++++||++.+++.++..
T Consensus 1 l~G~nGsGKSTLl~~iaGl----~~p~~G----~I~i~g-~~i~-----~~~~----~~~~i~~v~q~~~l~~~~tv~-- 60 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGF----EQPDSG----SIMLDG-EDVT-----NVPP----HLRHINMVFQSYALFPHMTVE-- 60 (325)
T ss_pred CcCCCCCCHHHHHHHHHCC----CCCCce----EEEECC-EECC-----CCCH----HHCCEEEEecCccccCCCcHH--
Confidence 5899999999999999999 999999 999887 4331 1111 235699999998766553331
Q ss_pred EEeecCcccccCCcccccccCcCC---ccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEE
Q psy16304 281 YLIMCGVHQVSGIPDELTSATHLP---LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEV 357 (537)
Q Consensus 281 ~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~l 357 (537)
+++...+.. .... ...+....+..+|+.... .+.+.+|||||+||+ +++++++. + |++
T Consensus 61 ----------enl~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgGq~qRv----alaraL~~-~--p~l 121 (325)
T TIGR01187 61 ----------ENVAFGLKM-RKVPRAEIKPRVLEALRLVQLEEFA-DRKPHQLSGGQQQRV----ALARALVF-K--PKI 121 (325)
T ss_pred ----------HHHHHHHhh-cCCCHHHHHHHHHHHHHHcCCcchh-cCChhhCCHHHHHHH----HHHHHHHh-C--CCE
Confidence 111100000 0000 001122334466776544 455899999999999 99999996 5 899
Q ss_pred EEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchh
Q psy16304 358 FLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLS 417 (537)
Q Consensus 358 llLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~ 417 (537)
++|| |+|++.. ...+.++.++.+.+++++ +|+..+....+ +++|++|+++..+.+.++.
T Consensus 122 llLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiiv-THd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~ 189 (325)
T TIGR01187 122 LLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFV-THDQEEAMTMSDRIAIMRKGKIAQIGTPEEIY 189 (325)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999 9999332 222234333334566666 89988766543 8999999999888877764
No 322
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=1.4e-18 Score=175.08 Aligned_cols=212 Identities=11% Similarity=0.083 Sum_probs=129.3
Q ss_pred hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccC-----
Q psy16304 152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVP----- 226 (537)
Q Consensus 152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~P----- 226 (537)
.+.++++.+.|+...+ -.++++.+.+|++++|+|+||||||||+++|+|. ..|
T Consensus 16 ~l~~~~l~~~~~~~~v------------------l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~~~~~~~ 73 (265)
T PRK14252 16 KSEVNKLNFYYGGYQA------------------LKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRM----HDLYPGNH 73 (265)
T ss_pred eEEEEEEEEEECCeee------------------eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcc----cCCCCCCC
Confidence 4567777776653221 2345677889999999999999999999999998 654
Q ss_pred ceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccc--eeeEEeecCcccccCCcccccccCcCC
Q psy16304 227 TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRT--CQVYLIMCGVHQVSGIPDELTSATHLP 304 (537)
Q Consensus 227 t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~--~il~v~Ds~~~~~~~l~~~l~~~~~l~ 304 (537)
++| +|.++| ..+...+. ......++..+++++|++.++.. +. .+.+... ........
T Consensus 74 ~sG----~i~~~g-~~~~~~~~---~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~------------~~~~~~~~ 132 (265)
T PRK14252 74 YEG----EIILHP-DNVNILSP---EVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLR------------IRGVKRRS 132 (265)
T ss_pred ccc----EEEEcC-cccccccc---ccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHH------------HcCCChHH
Confidence 789 888876 33322111 00011234678999999775542 11 0000000 00000000
Q ss_pred c-cccCCccEEEeccCc---cCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH-----HHHH
Q psy16304 305 L-VDFRSVPILVLGLDN---AGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR-----TIWK 373 (537)
Q Consensus 305 ~-~~~~~~~L~llGl~~---~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~-----~l~~ 373 (537)
. .......+..+|+.. ......+..||+|++||+ +++++++. + |+++++| |+|++... ..+.
T Consensus 133 ~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv----~laral~~-~--p~llllDEPt~gLD~~~~~~l~~~l~ 205 (265)
T PRK14252 133 ILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRL----CIARALAT-D--PEILLFDEPTSALDPIATASIEELIS 205 (265)
T ss_pred HHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHH----HHHHHHHc-C--CCEEEEeCCCccCCHHHHHHHHHHHH
Confidence 0 000011111222210 112344788999999999 99999996 5 8999999 99993322 2223
Q ss_pred HHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEecccch
Q psy16304 374 QYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 374 ~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~nkdl 416 (537)
.+. . +.+++++ +|+.+..... + ++++++|+++..+.++++
T Consensus 206 ~l~-~-~~tiiiv-th~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 247 (265)
T PRK14252 206 DLK-N-KVTILIV-THNMQQAARVSDYTAYMYMGELIEFGATDTI 247 (265)
T ss_pred HHH-h-CCEEEEE-ecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 332 2 3567777 8998887643 3 888999999988887766
No 323
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.71 E-value=2e-18 Score=209.69 Aligned_cols=272 Identities=14% Similarity=0.059 Sum_probs=161.1
Q ss_pred hhHHHHHhhhcccccccccccccccCccccccccCCCCCCch-hHH-----HHHHHH---HHHHhhhcccccCCCcccCC
Q psy16304 95 EIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAPTF-EVC-----IVSLLV---HLMRGILMGIQNVPNFQTSS 165 (537)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~-----~~~~l~---~~m~~~li~~~~l~k~~~~~ 165 (537)
-..++..+...+.++.....+++|+.++++.+.....+.++- .+. ...... .......+.++++...|+..
T Consensus 1151 l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~ 1230 (1490)
T TIGR01271 1151 ILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA 1230 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC
Confidence 344566666666777777788888887776443221111000 000 000000 00001134455555555321
Q ss_pred CCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEE
Q psy16304 166 VLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFL 245 (537)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~ 245 (537)
. ..+-.++++.+++|+++||||++|||||||+++|.|. +. +.| +|.++| +++.-
T Consensus 1231 ~----------------~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl----~~-~~G----~I~IdG-~di~~ 1284 (1490)
T TIGR01271 1231 G----------------RAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRL----LS-TEG----EIQIDG-VSWNS 1284 (1490)
T ss_pred C----------------cceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhh----cC-CCc----EEEECC-EEccc
Confidence 0 1123456788999999999999999999999999999 75 789 999997 66654
Q ss_pred eecCCCchhhHHHHhhhhccccCCCCCCC-ccceeeEEee-cCcccccCCcccccccCcCCccccC-CccEEEeccCccC
Q psy16304 246 YDLGGSEDFRTIWKQYLGTVSQTPLGRPD-SRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFR-SVPILVLGLDNAG 322 (537)
Q Consensus 246 ~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~-~~~L~llGl~~~g 322 (537)
++. .. +++.+++++|++.+|.. ..+++ | ......+.+.+.++...-.+..... .-.-..+|..
T Consensus 1285 i~~---~~----lR~~is~IpQdp~LF~GTIR~NL----dp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~--- 1350 (1490)
T TIGR01271 1285 VTL---QT----WRKAFGVIPQKVFIFSGTFRKNL----DPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDG--- 1350 (1490)
T ss_pred CCH---HH----HHhceEEEeCCCccCccCHHHHh----CcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccC---
Confidence 433 23 44889999999998865 22222 1 0000000111111111000000000 0000022221
Q ss_pred ccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHHH--HHHHHHhc-CCEEEEEEeCCCcchhhhh
Q psy16304 323 KSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRT--IWKQYLGT-VSQTLLVSHSLSGRPDDRC 397 (537)
Q Consensus 323 Ks~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~--l~~~~~~~-~~~vIlVvdshd~~~~~~~ 397 (537)
-..|||||+|++ ++||+++. + +++++|| |++++...+ +.+.+.+. .+.+++++ +|.......+
T Consensus 1351 ----G~nLSgGQrQrL----~LARALLr-~--~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~I-aHRl~ti~~~ 1418 (1490)
T TIGR01271 1351 ----GYVLSNGHKQLM----CLARSILS-K--AKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILS-EHRVEALLEC 1418 (1490)
T ss_pred ----CCcCCHHHHHHH----HHHHHHhC-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEE-ecCHHHHHhC
Confidence 124999999999 99999996 5 7999999 999944332 22333332 34577777 8998888776
Q ss_pred h-hhhhcCCcEEEEecccchhh
Q psy16304 398 Q-VYLMSCNCQVYLISAKNLSN 418 (537)
Q Consensus 398 ~-i~ll~~G~ii~~g~nkdl~~ 418 (537)
+ +++|++|+++..|++.++..
T Consensus 1419 DrIlvL~~G~ivE~g~p~~Ll~ 1440 (1490)
T TIGR01271 1419 QQFLVIEGSSVKQYDSIQKLLN 1440 (1490)
T ss_pred CEEEEEECCEEEEeCCHHHHHc
Confidence 6 99999999999999998853
No 324
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=2.1e-18 Score=174.84 Aligned_cols=208 Identities=14% Similarity=0.135 Sum_probs=128.3
Q ss_pred hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccC-----
Q psy16304 152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVP----- 226 (537)
Q Consensus 152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~P----- 226 (537)
++.++++.+.|+... +..++++.+.+|++++|+|+||||||||+++|+|. ..|
T Consensus 20 ~l~~~nl~~~~~~~~------------------~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl----~~~~~~~~ 77 (274)
T PRK14265 20 VFEVEGVKVFYGGFL------------------ALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRM----NDLIPGAK 77 (274)
T ss_pred eEEEeeEEEEeCCeE------------------EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcc----cccccCCC
Confidence 466778887765321 12345677889999999999999999999999998 653
Q ss_pred ceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC--
Q psy16304 227 TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP-- 304 (537)
Q Consensus 227 t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~-- 304 (537)
+.| +|.++| .++...+. . ...++..+++++|++.++.. +. .+ ++..... .....
T Consensus 78 ~~G----~i~~~g-~~l~~~~~----~-~~~~~~~i~~v~q~~~l~~~-tv-----~~-------nl~~~~~-~~~~~~~ 133 (274)
T PRK14265 78 VEG----RLLYRD-RNIYDSQI----N-SVKLRRQVGMVFQRPNPFPK-SI-----YE-------NIAFAPR-ANGYKGN 133 (274)
T ss_pred cCc----eEEECC-Eecccccc----h-hHHHhhcEEEEccCCccccc-cH-----HH-------HHHhHHH-hcCchHH
Confidence 689 888887 44321110 1 11234679999999775532 11 11 0000000 00000
Q ss_pred ccccCCccEEEecc----CccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-----HHHHH
Q psy16304 305 LVDFRSVPILVLGL----DNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWK 373 (537)
Q Consensus 305 ~~~~~~~~L~llGl----~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~ 373 (537)
........+..+|+ ... ....+.+|||||+||+ +++++++. + |+++++| |+|++.. ..++.
T Consensus 134 ~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LSgGq~qrv----~LAraL~~-~--p~lllLDEPt~~LD~~~~~~l~~~L~ 205 (274)
T PRK14265 134 LDELVEDSLRRAAIWEEVKDK-LKEKGTALSGGQQQRL----CIARAIAM-K--PDVLLMDEPCSALDPISTRQVEELCL 205 (274)
T ss_pred HHHHHHHHHHHcccchhhHHH-hcCCcccCCHHHHHHH----HHHHHHhh-C--CCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 00000111112222 111 2344788999999999 99999996 5 8999999 9999332 22333
Q ss_pred HHHhcCCEEEEEEeCCCcchhhhhh--hhhhc---------CCcEEEEecccch
Q psy16304 374 QYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMS---------CNCQVYLISAKNL 416 (537)
Q Consensus 374 ~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~---------~G~ii~~g~nkdl 416 (537)
.+. + +.+++++ +|+.......+ +++++ +|+++..+...++
T Consensus 206 ~~~-~-~~tiii~-sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g~~~~~ 256 (274)
T PRK14265 206 ELK-E-QYTIIMV-THNMQQASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQM 256 (274)
T ss_pred HHh-c-CCEEEEE-eCCHHHHHHhCCEEEEEecccccccccCceEEEeCCHHHH
Confidence 332 2 3567777 89988776544 77776 7999888877766
No 325
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=1.7e-18 Score=172.86 Aligned_cols=193 Identities=12% Similarity=0.091 Sum_probs=120.2
Q ss_pred ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCcccc-----CceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhh
Q psy16304 187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLV-----PTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQY 261 (537)
Q Consensus 187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~-----Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~ 261 (537)
.++++.+.+|++++|+|+||+|||||+++|+|. .. |++| +|.++| .++...+. . ...++..
T Consensus 20 ~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~~~~~~~~~G----~v~~~g-~~i~~~~~----~-~~~~~~~ 85 (250)
T PRK14266 20 KNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRM----NDLIPGFRHEG----HIYLDG-VDIYDPAV----D-VVELRKK 85 (250)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh----hccCCCCCCcc----EEEECC-EEcccccc----c-HHHHhhh
Confidence 345677889999999999999999999999997 53 4899 899887 44422110 0 1123467
Q ss_pred hhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC---ccccCCccEEEeccCc---cCccchhhhhcCCCc
Q psy16304 262 LGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDFRSVPILVLGLDN---AGKSSIIKRILGEPI 335 (537)
Q Consensus 262 i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~~~~~L~llGl~~---~gKs~li~~LSgG~r 335 (537)
+++++|++.++.. +. .+ ++........... ........+..+|+.. ......+..||+||+
T Consensus 86 i~~~~q~~~~~~~-t~-----~~-------nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~ 152 (250)
T PRK14266 86 VGMVFQKPNPFPK-SI-----FD-------NVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQ 152 (250)
T ss_pred eEEEecCCccCcc-hH-----HH-------HHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHH
Confidence 9999999875542 11 00 0000000000000 0000111122233311 112344788999999
Q ss_pred eeeecccccccceeccCCceEEEEEe--cCchhhHH--H---HHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCc
Q psy16304 336 ISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR--T---IWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNC 406 (537)
Q Consensus 336 qrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~--~---l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ 406 (537)
||+ +++++++. + |+++++| |+|++... . ++..+. + +.+++++ +|+.......+ ++++++|+
T Consensus 153 qrv----~laral~~-~--p~llllDEP~~gLD~~~~~~l~~~l~~~~-~-~~tiii~-sh~~~~~~~~~~~i~~l~~G~ 222 (250)
T PRK14266 153 QRL----CIARTIAV-S--PEVILMDEPCSALDPISTTKIEDLIHKLK-E-DYTIVIV-THNMQQATRVSKYTSFFLNGE 222 (250)
T ss_pred HHH----HHHHHHHc-C--CCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEE-ECCHHHHHhhcCEEEEEECCe
Confidence 999 99999996 5 8999999 99984332 2 223332 2 3566776 78888776655 67789999
Q ss_pred EEEEecccch
Q psy16304 407 QVYLISAKNL 416 (537)
Q Consensus 407 ii~~g~nkdl 416 (537)
+...+.+.++
T Consensus 223 i~~~g~~~~~ 232 (250)
T PRK14266 223 IIESGLTDQI 232 (250)
T ss_pred EEEeCCHHHH
Confidence 9988777665
No 326
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.70 E-value=5.2e-18 Score=157.23 Aligned_cols=225 Identities=16% Similarity=0.095 Sum_probs=143.6
Q ss_pred hhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceee
Q psy16304 151 ILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF 230 (537)
Q Consensus 151 ~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~ 230 (537)
.+..+++++|.|....- .|..-.+.+++.+||+..+|..++++|.||+|||||.++|+|. +.||+|
T Consensus 3 ~LLeV~nLsKtF~~~~~---------lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGm----i~PTsG- 68 (267)
T COG4167 3 TLLEVRNLSKTFRYRTG---------LFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGM----IEPTSG- 68 (267)
T ss_pred chhhhhhhhhhhhhhhh---------hhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcc----cCCCCc-
Confidence 45678888886543221 1222236688889999999999999999999999999999999 999999
Q ss_pred eeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCcccc--
Q psy16304 231 NRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDF-- 308 (537)
Q Consensus 231 t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~-- 308 (537)
++.++| ..+..-| ..+| .+.+.++||++.-...-...+..+.| .-+...-.+....+
T Consensus 69 ---~il~n~-~~L~~~D----y~~R---~k~IRMiFQDpnts~NPRl~iGqiLd----------~PL~l~T~~~~~~R~~ 127 (267)
T COG4167 69 ---EILIND-HPLHFGD----YSFR---SKRIRMIFQDPNTSLNPRLRIGQILD----------FPLRLNTDLEPEQRRK 127 (267)
T ss_pred ---eEEECC-ccccccc----hHhh---hhheeeeecCCccccChhhhhhhHhc----------chhhhcccCChHHHHH
Confidence 999987 5444433 2333 36799999998722111111111111 11111111211111
Q ss_pred -CCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-H-HHHHHH--HhcCCE
Q psy16304 309 -RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-R-TIWKQY--LGTVSQ 381 (537)
Q Consensus 309 -~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-~-~l~~~~--~~~~~~ 381 (537)
.-..+..+|+-.....-.++.||-|++||| ++|+|++. + |++++.| .++++.. + +++... +++..+
T Consensus 128 ~i~~TL~~VGL~Pdhan~~~~~la~~QKQRV----aLARALIL-~--P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~G 200 (267)
T COG4167 128 QIFETLRMVGLLPDHANYYPHMLAPGQKQRV----ALARALIL-R--PKIIIADEALASLDMSMRSQLINLMLELQEKQG 200 (267)
T ss_pred HHHHHHHHhccCccccccchhhcCchhHHHH----HHHHHHhc-C--CcEEEehhhhhhccHHHHHHHHHHHHHHHHHhC
Confidence 122344667543333455899999999999 99999997 5 8999999 6666322 2 222221 223344
Q ss_pred EEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchh
Q psy16304 382 TLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLS 417 (537)
Q Consensus 382 vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~ 417 (537)
+-+++-+.+.-...... +++|+.|+++.+|.+.++.
T Consensus 201 iSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v~ 238 (267)
T COG4167 201 ISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVL 238 (267)
T ss_pred ceEEEEechhhHhhhhcccEEEEecCceeecCChhhhh
Confidence 44444344444444443 9999999999999999873
No 327
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.70 E-value=2.8e-18 Score=172.18 Aligned_cols=195 Identities=15% Similarity=0.086 Sum_probs=120.1
Q ss_pred ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304 187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS 266 (537)
Q Consensus 187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~ 266 (537)
.++++.+.+|++++|+|+||||||||+++|+|. +.|++| ++.++| .++..++. ...+..+++++
T Consensus 38 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~~~~G----~i~i~g-~~i~~~~~-------~~~~~~i~~v~ 101 (257)
T cd03288 38 KHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRM----VDIFDG----KIVIDG-IDISKLPL-------HTLRSRLSIIL 101 (257)
T ss_pred eEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcc----cCCCCC----eEEECC-EEhhhCCH-------HHHhhhEEEEC
Confidence 345677889999999999999999999999999 999999 899887 44322111 12236789999
Q ss_pred cCCCCCCCccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEEe--ccCccCccchhhhhcCCCceeeecccc
Q psy16304 267 QTPLGRPDSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVL--GLDNAGKSSIIKRILGEPIISLVPTVG 343 (537)
Q Consensus 267 Q~~~l~~~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~ll--Gl~~~gKs~li~~LSgG~rqrvs~ti~ 343 (537)
|++.++.. +. ....+ ........+.+.+... .+ ...+..+ |+.... ......||+||+||+ +
T Consensus 102 q~~~l~~~-tv--~~nl~~~~~~~~~~~~~~l~~~-~l------~~~~~~~~~~l~~~~-~~~~~~LS~G~~qrl----~ 166 (257)
T cd03288 102 QDPILFSG-SI--RFNLDPECKCTDDRLWEALEIA-QL------KNMVKSLPGGLDAVV-TEGGENFSVGQRQLF----C 166 (257)
T ss_pred CCCccccc-HH--HHhcCcCCCCCHHHHHHHHHHh-Cc------HHHHhhcccccCcEe-ccCCCcCCHHHHHHH----H
Confidence 99875532 11 00000 0000000000000000 00 0001111 332221 223678999999999 9
Q ss_pred cccceeccCCceEEEEEe--cCchhhHHH--HHHHHHh-cCCEEEEEEeCCCcchhhhhh-hhhhcCCcEEEEecccch
Q psy16304 344 FNRARVEYGNKYEVFLYD--LGGSEDFRT--IWKQYLG-TVSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 344 la~all~~~e~p~lllLD--T~Gl~~~~~--l~~~~~~-~~~~vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g~nkdl 416 (537)
++++++. + |+++++| |+|++.... +++.+.+ ..+.+++++ +|+......++ ++++++|+++..+...++
T Consensus 167 laral~~-~--p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~-sh~~~~~~~~dri~~l~~G~i~~~g~~~~~ 241 (257)
T cd03288 167 LARAFVR-K--SSILIMDEATASIDMATENILQKVVMTAFADRTVVTI-AHRVSTILDADLVLVLSRGILVECDTPENL 241 (257)
T ss_pred HHHHHhc-C--CCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEE-ecChHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999996 5 8999999 999943322 2222222 123556666 78877776655 899999999887766555
No 328
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.70 E-value=2.3e-18 Score=169.01 Aligned_cols=177 Identities=14% Similarity=0.130 Sum_probs=108.6
Q ss_pred ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECC-cE--EEEEeecCCCchhhHHHHhhhh
Q psy16304 187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGN-KY--EVFLYDLGGSEDFRTIWKQYLG 263 (537)
Q Consensus 187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g-~~--~i~~~D~~G~~~~r~~~~~~i~ 263 (537)
.++++.+.+|++++|+|+||||||||+++|+|. +.|+.| +|.+++ +. ++..++. ..........++
T Consensus 25 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~----~~~~~G----~i~~~~~g~~~~~~~~~~---~~~~~~~~~~i~ 93 (224)
T TIGR02324 25 KNVSLTVNAGECVALSGPSGAGKSTLLKSLYAN----YLPDSG----RILVRHEGAWVDLAQASP---REVLEVRRKTIG 93 (224)
T ss_pred ecceEEECCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCC----eEEEecCCCccchhhcCH---HHHHHHHhcceE
Confidence 456678889999999999999999999999999 999999 888763 11 2211110 111112235689
Q ss_pred ccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC---ccccCCccEEEeccCccCccchhhhhcCCCceeeec
Q psy16304 264 TVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVP 340 (537)
Q Consensus 264 ~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ 340 (537)
+++|++.+++..+.. +++...+... ... ........+..+|+........+.+||+||+||+
T Consensus 94 ~~~q~~~~~~~~tv~------------e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl-- 158 (224)
T TIGR02324 94 YVSQFLRVIPRVSAL------------EVVAEPLLER-GVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRV-- 158 (224)
T ss_pred EEecccccCCCccHH------------HHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHH--
Confidence 999997755432220 0000000000 000 0011122334566654322445889999999999
Q ss_pred ccccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhh
Q psy16304 341 TVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDR 396 (537)
Q Consensus 341 ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~ 396 (537)
+++++++. + |+++++| |+|++.. ...+..+.+. +.+++++ +|+......
T Consensus 159 --~laral~~-~--p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~v-sH~~~~~~~ 214 (224)
T TIGR02324 159 --NIARGFIA-D--YPILLLDEPTASLDAANRQVVVELIAEAKAR-GAALIGI-FHDEEVREL 214 (224)
T ss_pred --HHHHHHhc-C--CCEEEEcCCcccCCHHHHHHHHHHHHHHHhc-CCEEEEE-eCCHHHHHH
Confidence 99999996 4 8999999 9999322 2233343333 4566666 788776654
No 329
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.70 E-value=2.2e-18 Score=169.37 Aligned_cols=205 Identities=15% Similarity=0.147 Sum_probs=122.4
Q ss_pred hhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceee
Q psy16304 151 ILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF 230 (537)
Q Consensus 151 ~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~ 230 (537)
.++.++++.+.|+... + ..+-.++++.+.+|++++|+|+||||||||+++|+|. ..|++|
T Consensus 10 ~~l~~~~l~~~~~~~~---~------------~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~~~~G- 69 (226)
T cd03248 10 GIVKFQNVTFAYPTRP---D------------TLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENF----YQPQGG- 69 (226)
T ss_pred ceEEEEEEEEEeCCCC---C------------CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC----cCCCCc-
Confidence 3566788888765321 0 0012345677889999999999999999999999999 999999
Q ss_pred eeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCC-ccceeeEEeecCcccccCCcccccccCcCCccccC
Q psy16304 231 NRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPD-SRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFR 309 (537)
Q Consensus 231 t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~ 309 (537)
++.++| ..+...+ ....+..+++++|++.++.. ..+.+.+... . ....+ ..........
T Consensus 70 ---~i~~~g-~~~~~~~-------~~~~~~~i~~~~q~~~l~~~tv~~nl~~~~~----~-~~~~~----~~~~~~~~~~ 129 (226)
T cd03248 70 ---QVLLDG-KPISQYE-------HKYLHSKVSLVGQEPVLFARSLQDNIAYGLQ----S-CSFEC----VKEAAQKAHA 129 (226)
T ss_pred ---EEEECC-CchHHcC-------HHHHHhhEEEEecccHHHhhhHHHHhccccC----C-CCHHH----HHHHHHHcCc
Confidence 888887 3322111 11223668999998765432 0111100000 0 00000 0000000001
Q ss_pred CccEEEe--ccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCC
Q psy16304 310 SVPILVL--GLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVS 380 (537)
Q Consensus 310 ~~~L~ll--Gl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~ 380 (537)
...+..+ |+.... ...+.+|||||+||+ +++++++. + |+++++| |+|++.. ...+..+. . +
T Consensus 130 ~~~l~~l~~gl~~~~-~~~~~~LSgG~~qrv----~laral~~-~--p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~ 199 (226)
T cd03248 130 HSFISELASGYDTEV-GEKGSQLSGGQKQRV----AIARALIR-N--PQVLILDEATSALDAESEQQVQQALYDWP-E-R 199 (226)
T ss_pred HHHHHhccccccchh-hcCCCcCCHHHHHHH----HHHHHHhc-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHc-C-C
Confidence 1112223 554433 333789999999999 99999996 5 8999999 9999322 22223332 2 3
Q ss_pred EEEEEEeCCCcchhhhhh-hhhhcCCc
Q psy16304 381 QTLLVSHSLSGRPDDRCQ-VYLMSCNC 406 (537)
Q Consensus 381 ~vIlVvdshd~~~~~~~~-i~ll~~G~ 406 (537)
.+++++ +|+......++ ++++++|+
T Consensus 200 ~tii~~-sh~~~~~~~~d~i~~l~~g~ 225 (226)
T cd03248 200 RTVLVI-AHRLSTVERADQILVLDGGR 225 (226)
T ss_pred CEEEEE-ECCHHHHHhCCEEEEecCCc
Confidence 566666 78877766544 77777775
No 330
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.69 E-value=6.3e-18 Score=162.64 Aligned_cols=167 Identities=16% Similarity=0.128 Sum_probs=105.4
Q ss_pred ccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccC
Q psy16304 189 LSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQT 268 (537)
Q Consensus 189 ~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~ 268 (537)
+++.+.+|++++|+|+||||||||+++|+|. ..|++| ++.++| ..+.. .. ...+++++|.
T Consensus 19 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~----~~~~~G----~i~~~g-~~i~~--------~~---~~~~~~~~~~ 78 (195)
T PRK13541 19 LSITFLPSAITYIKGANGCGKSSLLRMIAGI----MQPSSG----NIYYKN-CNINN--------IA---KPYCTYIGHN 78 (195)
T ss_pred EEEEEcCCcEEEEECCCCCCHHHHHHHHhcC----CCCCCc----EEEECC-cccCh--------hh---hhhEEeccCC
Confidence 5677889999999999999999999999999 999999 888887 33211 11 1347787877
Q ss_pred CCCCCCccceeeEEeecCcccccCCcccccccCc-CCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccc
Q psy16304 269 PLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATH-LPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA 347 (537)
Q Consensus 269 ~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~-l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~a 347 (537)
...+...+. .+.+..... ..........+..+|+.... ...+..||+||++|+ +++++
T Consensus 79 ~~~~~~~tv----------------~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~~rl----~la~a 137 (195)
T PRK13541 79 LGLKLEMTV----------------FENLKFWSEIYNSAETLYAAIHYFKLHDLL-DEKCYSLSSGMQKIV----AIARL 137 (195)
T ss_pred cCCCccCCH----------------HHHHHHHHHhcccHHHHHHHHHHcCCHhhh-ccChhhCCHHHHHHH----HHHHH
Confidence 543322111 000000000 00001111222344554433 344889999999999 99999
Q ss_pred eeccCCceEEEEEe--cCchhhH--HHHHHHHH--hcCCEEEEEEeCCCcchhhhhhhh
Q psy16304 348 RVEYGNKYEVFLYD--LGGSEDF--RTIWKQYL--GTVSQTLLVSHSLSGRPDDRCQVY 400 (537)
Q Consensus 348 ll~~~e~p~lllLD--T~Gl~~~--~~l~~~~~--~~~~~vIlVvdshd~~~~~~~~i~ 400 (537)
++. + |+++++| |+|++.. ..+++.+. ...+.+++++ +|+.......+++
T Consensus 138 l~~-~--p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~-sh~~~~i~~~~~~ 192 (195)
T PRK13541 138 IAC-Q--SDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLS-SHLESSIKSAQIL 192 (195)
T ss_pred Hhc-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEE-eCCccccchhhee
Confidence 996 5 8999999 8999332 22333221 2334566666 8888877665533
No 331
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.69 E-value=5.3e-18 Score=170.99 Aligned_cols=217 Identities=15% Similarity=0.093 Sum_probs=124.6
Q ss_pred hcccccCCCcccCCCCCCCCCcch-hhc-ccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304 152 LMGIQNVPNFQTSSVLSDDPAPTF-ENF-LDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG 229 (537)
Q Consensus 152 li~~~~l~k~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G 229 (537)
.+.+.|+.+.|.......++...+ ..+ ......+-.++++.+.+|++++|+|+||||||||+++|+|. +.|+.|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl----~~p~~G 79 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGS----LSPTVG 79 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC----cCCCce
Confidence 356677777776532211111100 000 11223345678889999999999999999999999999999 999999
Q ss_pred eeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccC
Q psy16304 230 FNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFR 309 (537)
Q Consensus 230 ~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~ 309 (537)
++.++|...+.. ...+...... ....+.+. . . . .. .. ..+... ..
T Consensus 80 ----~I~~~g~~~~~~-~~~~~~~~~t-v~enl~~~-~---------~-----~-~~---~~-~~~~~~---------~~ 124 (264)
T PRK13546 80 ----KVDRNGEVSVIA-ISAGLSGQLT-GIENIEFK-M---------L-----C-MG---FK-RKEIKA---------MT 124 (264)
T ss_pred ----EEEECCEEeEEe-cccCCCCCCc-HHHHHHHH-H---------H-----H-cC---CC-HHHHHH---------HH
Confidence 888887321110 0111100000 00111000 0 0 0 00 00 000000 00
Q ss_pred CccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH--HHHH---HHHHhcCCEE
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIW---KQYLGTVSQT 382 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l~---~~~~~~~~~v 382 (537)
...+..+|+.... ...+..||+||++|+ +++++++. + |++++|| |+|++.. ..++ ..+. ..+.+
T Consensus 125 ~~~l~~~~l~~~~-~~~~~~LS~Gq~qrv----~Laral~~-~--p~iLlLDEPt~gLD~~~~~~l~~~L~~~~-~~g~t 195 (264)
T PRK13546 125 PKIIEFSELGEFI-YQPVKKYSSGMRAKL----GFSINITV-N--PDILVIDEALSVGDQTFAQKCLDKIYEFK-EQNKT 195 (264)
T ss_pred HHHHHHcCCchhh-cCCcccCCHHHHHHH----HHHHHHhh-C--CCEEEEeCccccCCHHHHHHHHHHHHHHH-HCCCE
Confidence 0111123333322 334788999999999 99999996 5 8999999 9999432 2233 3332 23456
Q ss_pred EEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchh
Q psy16304 383 LLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLS 417 (537)
Q Consensus 383 IlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~ 417 (537)
++++ +|+......++ ++++++|++...++..++.
T Consensus 196 iIii-sH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (264)
T PRK13546 196 IFFV-SHNLGQVRQFCTKIAWIEGGKLKDYGELDDVL 231 (264)
T ss_pred EEEE-cCCHHHHHHHcCEEEEEECCEEEEeCCHHHHH
Confidence 7777 88888776543 8899999998887766653
No 332
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.69 E-value=5.2e-18 Score=164.70 Aligned_cols=183 Identities=19% Similarity=0.221 Sum_probs=116.9
Q ss_pred ccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecC-CCc-hh--hH--
Q psy16304 183 VLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLG-GSE-DF--RT-- 256 (537)
Q Consensus 183 ~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~-G~~-~~--r~-- 256 (537)
+.+-++++|++.+|+++||||+||||||||+++|+|. +.||+| ++.+.|.+. .+++.+ |.. +. +.
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi----~~Pt~G----~v~v~G~v~-~li~lg~Gf~pelTGreNi 110 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGI----YKPTSG----KVKVTGKVA-PLIELGAGFDPELTGRENI 110 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCc----cCCCCc----eEEEcceEe-hhhhcccCCCcccchHHHH
Confidence 3455678899999999999999999999999999999 999999 999887222 122221 111 00 00
Q ss_pred -HHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCc
Q psy16304 257 -IWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPI 335 (537)
Q Consensus 257 -~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~r 335 (537)
+....+|+ +. ++..+ +.+..+..-++.+. .+.+++.+|.||+
T Consensus 111 ~l~~~~~G~-----------~~-------------~ei~~------------~~~eIieFaELG~f-i~~PvktYSSGM~ 153 (249)
T COG1134 111 YLRGLILGL-----------TR-------------KEIDE------------KVDEIIEFAELGDF-IDQPVKTYSSGMY 153 (249)
T ss_pred HHHHHHhCc-----------cH-------------HHHHH------------HHHHHHHHHHHHHH-hhCchhhccHHHH
Confidence 00011111 00 00000 11111112222222 3556899999999
Q ss_pred eeeecccccccceeccCCceEEEEEe---cCchhhHHH----HHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCc
Q psy16304 336 ISLVPTVGFNRARVEYGNKYEVFLYD---LGGSEDFRT----IWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNC 406 (537)
Q Consensus 336 qrvs~ti~la~all~~~e~p~lllLD---T~Gl~~~~~----l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ 406 (537)
.|+ +++.+.-. + |+++++| ..|-..+.+ .+.++.++. .+++++ +||.......| ..++++|+
T Consensus 154 aRL----aFsia~~~-~--pdILllDEvlavGD~~F~~K~~~rl~e~~~~~-~tiv~V-SHd~~~I~~~Cd~~i~l~~G~ 224 (249)
T COG1134 154 ARL----AFSVATHV-E--PDILLLDEVLAVGDAAFQEKCLERLNELVEKN-KTIVLV-SHDLGAIKQYCDRAIWLEHGQ 224 (249)
T ss_pred HHH----HHhhhhhc-C--CCEEEEehhhhcCCHHHHHHHHHHHHHHHHcC-CEEEEE-ECCHHHHHHhcCeeEEEeCCE
Confidence 999 88888775 5 8999999 444444433 334544444 555556 78887777655 88899999
Q ss_pred EEEEecccchhhhh
Q psy16304 407 QVYLISAKNLSNGF 420 (537)
Q Consensus 407 ii~~g~nkdl~~~~ 420 (537)
+...|.+++....+
T Consensus 225 i~~~G~~~~vi~~Y 238 (249)
T COG1134 225 IRMEGSPEEVIPAY 238 (249)
T ss_pred EEEcCCHHHHHHHH
Confidence 99999998875443
No 333
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=4.3e-18 Score=171.39 Aligned_cols=194 Identities=15% Similarity=0.098 Sum_probs=119.2
Q ss_pred ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccC-----ceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhh
Q psy16304 187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVP-----TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQY 261 (537)
Q Consensus 187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~P-----t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~ 261 (537)
.++++.+.+|++++|+|+||||||||+++|+|. +.| +.| +|.++| .++...+. . ...++..
T Consensus 25 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~p~~~~~~~G----~i~~~g-~~i~~~~~---~--~~~~~~~ 90 (261)
T PRK14263 25 RDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRM----NDLVKGFRFEG----HVHFLG-QDVYGKGV---D--PVVVRRY 90 (261)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcc----cccccCCCCce----EEEECC-Eecccccc---c--hHhhhhc
Confidence 345677889999999999999999999999999 765 788 999987 44322111 1 1123467
Q ss_pred hhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC--ccccCCccEEEeccCcc---CccchhhhhcCCCce
Q psy16304 262 LGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP--LVDFRSVPILVLGLDNA---GKSSIIKRILGEPII 336 (537)
Q Consensus 262 i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~--~~~~~~~~L~llGl~~~---gKs~li~~LSgG~rq 336 (537)
+++++|++.++. .+. .+ ++..... ..... ........+..+|+... .....+..||+||+|
T Consensus 91 i~~v~q~~~~~~-~tv-----~e-------nl~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~q 156 (261)
T PRK14263 91 IGMVFQQPNPFS-MSI-----FD-------NVAFGLR-LNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQ 156 (261)
T ss_pred eEEEecCCcccc-ccH-----HH-------HHHHHHh-hcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHH
Confidence 999999977542 111 01 0000000 00000 00011112223333211 112346789999999
Q ss_pred eeecccccccceeccCCceEEEEEe--cCchhhH--HHHHHHHHhc-CCEEEEEEeCCCcchhhhh-h-hhhhc------
Q psy16304 337 SLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIWKQYLGT-VSQTLLVSHSLSGRPDDRC-Q-VYLMS------ 403 (537)
Q Consensus 337 rvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l~~~~~~~-~~~vIlVvdshd~~~~~~~-~-i~ll~------ 403 (537)
|+ +++++++. + |+++++| |+|++.. ..+++.+.+. ...+++++ +|+....... + +++++
T Consensus 157 rv----~laral~~-~--p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~i-sH~~~~i~~~~d~v~~l~~~~~~~ 228 (261)
T PRK14263 157 RL----CIARAIAT-E--PEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALV-THNMQQAIRVADTTAFFSVDISQG 228 (261)
T ss_pred HH----HHHHHHHc-C--CCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEE-eCCHHHHHHhCCEEEEEecccccc
Confidence 99 99999996 5 8999999 9999322 2233322221 13466666 8888876553 3 77784
Q ss_pred --CCcEEEEecccch
Q psy16304 404 --CNCQVYLISAKNL 416 (537)
Q Consensus 404 --~G~ii~~g~nkdl 416 (537)
+|+++..+...++
T Consensus 229 ~~~G~i~~~g~~~~~ 243 (261)
T PRK14263 229 TRTGYLVEMGPTAQI 243 (261)
T ss_pred cCCceEEEeCCHHHH
Confidence 7999988877665
No 334
>PLN03232 ABC transporter C family member; Provisional
Probab=99.68 E-value=5.6e-18 Score=205.98 Aligned_cols=254 Identities=14% Similarity=0.094 Sum_probs=163.1
Q ss_pred chhhhhHHHHHhhhcccccccccccccccCccccccccCCCCCCchhHHHHHHHHHHHHhhhcccccCCCcccCCCCCCC
Q psy16304 91 MYKAEIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAPTFEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDD 170 (537)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~~~ 170 (537)
.|..-..|+..+...+..++.+..+++|+.+++..+.....+.++... ....+.++++...|+...
T Consensus 563 l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~~~~~~----------~~~~I~~~~vsF~y~~~~---- 628 (1495)
T PLN03232 563 LFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQNPPLQP----------GAPAISIKNGYFSWDSKT---- 628 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccCCcCC----------CCCcEEEEeeEEEcCCCC----
Confidence 345556788899999999999999999999998754322211111100 012355666666554210
Q ss_pred CCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCC
Q psy16304 171 PAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGG 250 (537)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G 250 (537)
.. ..-.++++.+++|++++|+|++|||||||++.|.|. +.|+.| .+.
T Consensus 629 -~~----------~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~----~~~~~G----~i~-------------- 675 (1495)
T PLN03232 629 -SK----------PTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGE----LSHAET----SSV-------------- 675 (1495)
T ss_pred -CC----------ceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC----CcccCC----CEE--------------
Confidence 00 113456788889999999999999999999999999 999998 221
Q ss_pred CchhhHHHHhhhhccccCCCCCCC-ccceeeEEeecCcccccCCcccc---cccCcCCccccCCccEEEeccCccCccch
Q psy16304 251 SEDFRTIWKQYLGTVSQTPLGRPD-SRTCQVYLIMCGVHQVSGIPDEL---TSATHLPLVDFRSVPILVLGLDNAGKSSI 326 (537)
Q Consensus 251 ~~~~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~Ds~~~~~~~l~~~l---~~~~~l~~~~~~~~~L~llGl~~~gKs~l 326 (537)
..+ ..+++|+|++.++.. ..+++.+.-+.+.+++..+.+.. ..+..++.. .-..+|..+.
T Consensus 676 --~~~----~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~G-----d~T~IGe~G~----- 739 (1495)
T PLN03232 676 --VIR----GSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGR-----DLTEIGERGV----- 739 (1495)
T ss_pred --Eec----CcEEEEcCccccccccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCC-----CCceecCCCc-----
Confidence 112 468999999998865 44555443222222222211110 011111111 0113444332
Q ss_pred hhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH--HHHHHHHhc--CCEEEEEEeCCCcchhhhhh-h
Q psy16304 327 IKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR--TIWKQYLGT--VSQTLLVSHSLSGRPDDRCQ-V 399 (537)
Q Consensus 327 i~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~--~l~~~~~~~--~~~vIlVvdshd~~~~~~~~-i 399 (537)
.||||||||+ ++|||++. + |++++|| |++++... .+.+..+.. .+.+++++ +|+......++ +
T Consensus 740 --~LSGGQkQRI----aLARAly~-~--~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~Ilv-TH~~~~l~~aD~I 809 (1495)
T PLN03232 740 --NISGGQKQRV----SMARAVYS-N--SDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLV-TNQLHFLPLMDRI 809 (1495)
T ss_pred --ccCHHHHHHH----HHHHHHhc-C--CCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEE-ECChhhHHhCCEE
Confidence 3999999999 99999996 5 8999999 99996443 244444332 23455555 67777776666 8
Q ss_pred hhhcCCcEEEEecccchh
Q psy16304 400 YLMSCNCQVYLISAKNLS 417 (537)
Q Consensus 400 ~ll~~G~ii~~g~nkdl~ 417 (537)
+++++|+++..|+.+++.
T Consensus 810 i~L~~G~i~~~Gt~~eL~ 827 (1495)
T PLN03232 810 ILVSEGMIKEEGTFAELS 827 (1495)
T ss_pred EEEeCCEEEEecCHHHHH
Confidence 999999999999887774
No 335
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.68 E-value=2.1e-17 Score=156.71 Aligned_cols=122 Identities=16% Similarity=0.125 Sum_probs=89.6
Q ss_pred ccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCC
Q psy16304 191 LFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL 270 (537)
Q Consensus 191 l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~ 270 (537)
+.+.+|++++|+|+||||||||+++|+|. ..|+.| +|.++| .. +++++|.
T Consensus 20 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl----~~p~~G----~i~~~g-~~-------------------i~~~~q~-- 69 (177)
T cd03222 20 GVVKEGEVIGIVGPNGTGKTTAVKILAGQ----LIPNGD----NDEWDG-IT-------------------PVYKPQY-- 69 (177)
T ss_pred cEECCCCEEEEECCCCChHHHHHHHHHcC----CCCCCc----EEEECC-EE-------------------EEEEccc--
Confidence 56779999999999999999999999999 999999 888776 21 2332221
Q ss_pred CCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceec
Q psy16304 271 GRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVE 350 (537)
Q Consensus 271 l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~ 350 (537)
.. ||+||+||+ +++++++.
T Consensus 70 ----------------------~~-----------------------------------LSgGq~qrv----~laral~~ 88 (177)
T cd03222 70 ----------------------ID-----------------------------------LSGGELQRV----AIAAALLR 88 (177)
T ss_pred ----------------------CC-----------------------------------CCHHHHHHH----HHHHHHhc
Confidence 00 999999999 99999996
Q ss_pred cCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcE
Q psy16304 351 YGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQ 407 (537)
Q Consensus 351 ~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~i 407 (537)
+ |+++++| |++++.. ...+.++.++.+.+++++ +|+.......+ +++++++..
T Consensus 89 -~--p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiiv-sH~~~~~~~~~d~i~~l~~~~~ 150 (177)
T cd03222 89 -N--ATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVV-EHDLAVLDYLSDRIHVFEGEPG 150 (177)
T ss_pred -C--CCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEE-ECCHHHHHHhCCEEEEEcCCCc
Confidence 5 8999999 8898332 223344434433566666 88888776533 666665543
No 336
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=1e-17 Score=173.90 Aligned_cols=216 Identities=13% Similarity=0.061 Sum_probs=132.7
Q ss_pred hhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCcccc-----
Q psy16304 151 ILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLV----- 225 (537)
Q Consensus 151 ~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~----- 225 (537)
.++.++++.+.|.... . .+-.++++.+.+|+++||+|+||||||||+++|+|. ..
T Consensus 79 ~~i~~~nls~~y~~~~---~-------------~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~----~~~~~~~ 138 (329)
T PRK14257 79 NVFEIRNFNFWYMNRT---K-------------HVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQL----NDLIEGT 138 (329)
T ss_pred ceEEEEeeEEEecCCC---c-------------eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc----ccccCCC
Confidence 3567788887764211 0 123456678889999999999999999999999998 54
Q ss_pred CceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCC-ccceeeEEeecCcccccCCcccccccCcCC
Q psy16304 226 PTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPD-SRTCQVYLIMCGVHQVSGIPDELTSATHLP 304 (537)
Q Consensus 226 Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~ 304 (537)
|+.| .|.++| .++...+. +. ..++..++++||++.++.. ..+.+.+... ...... .+.. .
T Consensus 139 p~~G----~I~idG-~~i~~~~~-~~----~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~--~~~~~~-~~~~------~ 199 (329)
T PRK14257 139 SHEG----EIYFLG-TNTRSKKI-SS----LELRTRIGMVFQKPTPFEMSIFDNVAYGPR--NNGIND-RKIL------E 199 (329)
T ss_pred CCce----EEEECC-EEcccccc-ch----HhhhccEEEEecCCccCCCcHHHHHHhHHH--hcCCCh-HHHH------H
Confidence 6789 999987 54421110 11 1223679999999886532 1111110000 000000 0000 0
Q ss_pred ccccCCccEEEeccCc---cCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-----HHHHHH
Q psy16304 305 LVDFRSVPILVLGLDN---AGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQ 374 (537)
Q Consensus 305 ~~~~~~~~L~llGl~~---~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~ 374 (537)
......+..+++.. .........|||||+||+ ++|++++. + |+++++| |++++.. ...+..
T Consensus 200 --~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl----~LARAl~~-~--p~IlLLDEPts~LD~~~~~~i~~~i~~ 270 (329)
T PRK14257 200 --KIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRL----CIARAIAL-E--PEVLLMDEPTSALDPIATAKIEELILE 270 (329)
T ss_pred --HHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHH----HHHHHHHh-C--CCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 00000011111110 011233678999999999 99999996 5 8999999 9998332 222333
Q ss_pred HHhcCCEEEEEEeCCCcchhhh-hh-hhhhcCCcEEEEecccchh
Q psy16304 375 YLGTVSQTLLVSHSLSGRPDDR-CQ-VYLMSCNCQVYLISAKNLS 417 (537)
Q Consensus 375 ~~~~~~~vIlVvdshd~~~~~~-~~-i~ll~~G~ii~~g~nkdl~ 417 (537)
+.+ +.+++++ +|+...... ++ ++++++|+++..|.+.++.
T Consensus 271 l~~--~~Tii~i-TH~l~~i~~~~Driivl~~G~i~e~g~~~~l~ 312 (329)
T PRK14257 271 LKK--KYSIIIV-THSMAQAQRISDETVFFYQGWIEEAGETKTIF 312 (329)
T ss_pred Hhc--CCEEEEE-eCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 332 3567777 899888765 44 9999999999999988873
No 337
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.67 E-value=1.1e-17 Score=163.60 Aligned_cols=190 Identities=14% Similarity=0.124 Sum_probs=108.5
Q ss_pred ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304 187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS 266 (537)
Q Consensus 187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~ 266 (537)
.++++.+.+|++++|+|+||||||||+++|+|. ..|+.| +|.++| ..+...+.. ..+...+..+++++
T Consensus 18 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~----~~~~~G----~i~~~g-~~~~~~~~~---~~~~~~~~~i~~~~ 85 (218)
T cd03290 18 SNINIRIPTGQLTMIVGQVGCGKSSLLLAILGE----MQTLEG----KVHWSN-KNESEPSFE---ATRSRNRYSVAYAA 85 (218)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc----CCCCCC----eEEECC-ccccccccc---ccchhhcceEEEEc
Confidence 345677889999999999999999999999999 899999 999886 433222110 00111225689999
Q ss_pred cCCCCCCC-ccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccc
Q psy16304 267 QTPLGRPD-SRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN 345 (537)
Q Consensus 267 Q~~~l~~~-~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la 345 (537)
|++.++.. ..+.+.+........ ....+..+ ++. .. ....-.|..... ...+..||+||+||+ +++
T Consensus 86 q~~~~~~~t~~~nl~~~~~~~~~~---~~~~~~~~-~l~--~~--~~~~~~~~~~~~-~~~~~~LS~G~~qrv----~la 152 (218)
T cd03290 86 QKPWLLNATVEENITFGSPFNKQR---YKAVTDAC-SLQ--PD--IDLLPFGDQTEI-GERGINLSGGQRQRI----CVA 152 (218)
T ss_pred CCCccccccHHHHHhhcCcCCHHH---HHHHHHHh-CcH--HH--HHhCcCccccCc-ccCCCcCCHHHHHHH----HHH
Confidence 99865421 001000000000000 00000000 000 00 000001111111 223778999999999 999
Q ss_pred cceeccCCceEEEEEe--cCchhhH--HHHHH----HHHhcCCEEEEEEeCCCcchhhhhh-hhhhcCC
Q psy16304 346 RARVEYGNKYEVFLYD--LGGSEDF--RTIWK----QYLGTVSQTLLVSHSLSGRPDDRCQ-VYLMSCN 405 (537)
Q Consensus 346 ~all~~~e~p~lllLD--T~Gl~~~--~~l~~----~~~~~~~~vIlVvdshd~~~~~~~~-i~ll~~G 405 (537)
++++. + |+++++| |+|++.. ..+++ ..+++.+.+++++ +|+......++ ++++++|
T Consensus 153 ral~~-~--p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~-sH~~~~~~~~d~i~~l~~G 217 (218)
T cd03290 153 RALYQ-N--TNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLV-THKLQYLPHADWIIAMKDG 217 (218)
T ss_pred HHHhh-C--CCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEE-eCChHHHhhCCEEEEecCC
Confidence 99996 5 8999999 9999443 22333 1223334566666 78877665444 6666655
No 338
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.67 E-value=3.9e-17 Score=153.32 Aligned_cols=140 Identities=17% Similarity=0.116 Sum_probs=96.1
Q ss_pred cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304 188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ 267 (537)
Q Consensus 188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q 267 (537)
.+++.+.+|++++|+|+||||||||+++|+|. ..|+.| ++.+++. ..+++++|
T Consensus 19 ~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~----~~~~~G----~i~~~~~-------------------~~i~~~~q 71 (166)
T cd03223 19 DLSFEIKPGDRLLITGPSGTGKSSLFRALAGL----WPWGSG----RIGMPEG-------------------EDLLFLPQ 71 (166)
T ss_pred cCeEEECCCCEEEEECCCCCCHHHHHHHHhcC----CCCCCc----eEEECCC-------------------ceEEEECC
Confidence 45677889999999999999999999999999 999999 7776541 34778888
Q ss_pred CCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccc
Q psy16304 268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA 347 (537)
Q Consensus 268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~a 347 (537)
++.++. .+ +.+.+. . + .+.+||+||+||+ +++++
T Consensus 72 ~~~~~~-~t----------------v~~nl~------~-----------~--------~~~~LS~G~~~rv----~lara 105 (166)
T cd03223 72 RPYLPL-GT----------------LREQLI------Y-----------P--------WDDVLSGGEQQRL----AFARL 105 (166)
T ss_pred CCcccc-cc----------------HHHHhh------c-----------c--------CCCCCCHHHHHHH----HHHHH
Confidence 765210 00 111110 0 0 1467999999999 99999
Q ss_pred eeccCCceEEEEEe--cCchhhHHHH-HHHHHhcCCEEEEEEeCCCcchhhhhh-hhhhcC
Q psy16304 348 RVEYGNKYEVFLYD--LGGSEDFRTI-WKQYLGTVSQTLLVSHSLSGRPDDRCQ-VYLMSC 404 (537)
Q Consensus 348 ll~~~e~p~lllLD--T~Gl~~~~~l-~~~~~~~~~~vIlVvdshd~~~~~~~~-i~ll~~ 404 (537)
++. + |+++++| |+|++..... ..+++++...+++++ +|+......++ ++++++
T Consensus 106 l~~-~--p~~lllDEPt~~LD~~~~~~l~~~l~~~~~tiiiv-sh~~~~~~~~d~i~~l~~ 162 (166)
T cd03223 106 LLH-K--PKFVFLDEATSALDEESEDRLYQLLKELGITVISV-GHRPSLWKFHDRVLDLDG 162 (166)
T ss_pred HHc-C--CCEEEEECCccccCHHHHHHHHHHHHHhCCEEEEE-eCChhHHhhCCEEEEEcC
Confidence 996 5 8999999 9999433322 233333334566666 77766544333 555544
No 339
>PLN03130 ABC transporter C family member; Provisional
Probab=99.67 E-value=1e-17 Score=204.23 Aligned_cols=252 Identities=15% Similarity=0.139 Sum_probs=162.0
Q ss_pred hhhhhHHHHHhhhcccccccccccccccCccccccccCCCCCCchhHHHHHHHHHHHHhhhcccccCCCcccCCCCCCCC
Q psy16304 92 YKAEIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAPTFEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDDP 171 (537)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~~~~ 171 (537)
|..-..|+..+...++.++.+..+++|+.+++..+.....+.++... ....+.++++...|+... +
T Consensus 564 ~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~~~~~~~----------~~~~I~~~nvsf~y~~~~---~- 629 (1622)
T PLN03130 564 FAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLLPNPPLEP----------GLPAISIKNGYFSWDSKA---E- 629 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCCcccC----------CCCceEEEeeEEEccCCC---C-
Confidence 34446788899999999999999999999998754322222221110 012356667666654210 0
Q ss_pred CcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCce-eeeeEEEEECCcEEEEEeecCC
Q psy16304 172 APTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTV-GFNRARVEYGNKYEVFLYDLGG 250 (537)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~-G~t~~~i~i~g~~~i~~~D~~G 250 (537)
. ..-.++++.+++|++++|+|++|||||||++.|.|. +.|+. | ++.+.
T Consensus 630 -~----------~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~----~~~~~GG----~I~l~------------ 678 (1622)
T PLN03130 630 -R----------PTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGE----LPPRSDA----SVVIR------------ 678 (1622)
T ss_pred -C----------ceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHh----hccCCCc----eEEEc------------
Confidence 0 112356688889999999999999999999999999 99999 8 44422
Q ss_pred CchhhHHHHhhhhccccCCCCCCC-ccceeeEEeecCcccccCCcccc---cccCcCCccccCCccEEEeccCccCccch
Q psy16304 251 SEDFRTIWKQYLGTVSQTPLGRPD-SRTCQVYLIMCGVHQVSGIPDEL---TSATHLPLVDFRSVPILVLGLDNAGKSSI 326 (537)
Q Consensus 251 ~~~~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~Ds~~~~~~~l~~~l---~~~~~l~~~~~~~~~L~llGl~~~gKs~l 326 (537)
..++||+|++.++.. ..+++.+.-+-+.+++..+.+.. ..+..++... -..+|..+.
T Consensus 679 ---------~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd-----~T~IGe~G~----- 739 (1622)
T PLN03130 679 ---------GTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGD-----LTEIGERGV----- 739 (1622)
T ss_pred ---------CeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcc-----cccccCCCC-----
Confidence 358899999988765 44544443221222222111110 0111111110 113343322
Q ss_pred hhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH--HHHHHHHhc--CCEEEEEEeCCCcchhhhhh-h
Q psy16304 327 IKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR--TIWKQYLGT--VSQTLLVSHSLSGRPDDRCQ-V 399 (537)
Q Consensus 327 i~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~--~l~~~~~~~--~~~vIlVvdshd~~~~~~~~-i 399 (537)
.||||||||+ ++|||++. + +++++|| |++++... .+.+..++. .+.+++++ +|+......++ +
T Consensus 740 --~LSGGQKQRI----aLARAly~-~--~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlV-TH~l~~l~~aD~I 809 (1622)
T PLN03130 740 --NISGGQKQRV----SMARAVYS-N--SDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLV-TNQLHFLSQVDRI 809 (1622)
T ss_pred --CCCHHHHHHH----HHHHHHhC-C--CCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEE-ECCHhHHHhCCEE
Confidence 3999999999 99999996 5 8999999 99996432 233443332 23455555 67777777666 8
Q ss_pred hhhcCCcEEEEecccchh
Q psy16304 400 YLMSCNCQVYLISAKNLS 417 (537)
Q Consensus 400 ~ll~~G~ii~~g~nkdl~ 417 (537)
+++++|++...|+.+++.
T Consensus 810 i~L~~G~i~e~Gt~~eL~ 827 (1622)
T PLN03130 810 ILVHEGMIKEEGTYEELS 827 (1622)
T ss_pred EEEeCCEEEEeCCHHHHH
Confidence 999999999999888774
No 340
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.67 E-value=1e-17 Score=162.14 Aligned_cols=174 Identities=17% Similarity=0.179 Sum_probs=100.9
Q ss_pred ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304 187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS 266 (537)
Q Consensus 187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~ 266 (537)
.++++.+.+|++++|+|+||||||||+++|+|. ..|++| +|.++| .+++++
T Consensus 22 ~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~----~~~~~G----~i~~~g---------------------~i~~~~ 72 (204)
T cd03250 22 KDINLEVPKGELVAIVGPVGSGKSSLLSALLGE----LEKLSG----SVSVPG---------------------SIAYVS 72 (204)
T ss_pred eeeeEEECCCCEEEEECCCCCCHHHHHHHHhCc----CCCCCC----eEEEcC---------------------EEEEEe
Confidence 346678889999999999999999999999999 999999 888775 145555
Q ss_pred cCCCCCCC-ccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccc
Q psy16304 267 QTPLGRPD-SRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN 345 (537)
Q Consensus 267 Q~~~l~~~-~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la 345 (537)
|++.++.. ..+.+.+......+. ..+.+.... +. .. ......|+.... ......||+||+||+ +++
T Consensus 73 q~~~l~~~t~~enl~~~~~~~~~~---~~~~~~~~~-l~--~~--~~~~~~~~~~~~-~~~~~~lS~G~~qrv----~la 139 (204)
T cd03250 73 QEPWIQNGTIRENILFGKPFDEER---YEKVIKACA-LE--PD--LEILPDGDLTEI-GEKGINLSGGQKQRI----SLA 139 (204)
T ss_pred cCchhccCcHHHHhccCCCcCHHH---HHHHHHHcC-cH--HH--HHhccCccccee-cCCCCcCCHHHHHHH----HHH
Confidence 55543321 001110000000000 000000000 00 00 000001211111 223678999999999 999
Q ss_pred cceeccCCceEEEEEe--cCchhhH--HHHHHHHHh---cCCEEEEEEeCCCcchhhhhh-hhhhcCCc
Q psy16304 346 RARVEYGNKYEVFLYD--LGGSEDF--RTIWKQYLG---TVSQTLLVSHSLSGRPDDRCQ-VYLMSCNC 406 (537)
Q Consensus 346 ~all~~~e~p~lllLD--T~Gl~~~--~~l~~~~~~---~~~~vIlVvdshd~~~~~~~~-i~ll~~G~ 406 (537)
++++. + |+++++| |++++.. ..+++.+++ ....+++++ +|+......++ ++++++|+
T Consensus 140 ral~~-~--p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~-sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 140 RAVYS-D--ADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILV-THQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred HHHhc-C--CCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEE-eCCHHHHhhCCEEEEEeCCC
Confidence 99996 5 8999999 9999443 233343322 223566666 78776665544 66666653
No 341
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.66 E-value=8.5e-18 Score=189.75 Aligned_cols=250 Identities=14% Similarity=0.016 Sum_probs=145.3
Q ss_pred hhhhhHHHHHhhhcccccccccccccccCccccccccCCCC-----CCc-hhHHHH-----------HHHHHHHHhhhcc
Q psy16304 92 YKAEIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDP-----APT-FEVCIV-----------SLLVHLMRGILMG 154 (537)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~p-~~~~~~-----------~~l~~~m~~~li~ 154 (537)
+...++|+.++...+.+++...++.+|+.++++....+.++ ..+ .+.... ..+ + .....+.
T Consensus 376 ~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~i~ 453 (659)
T TIGR00954 376 LLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIV-E-YQDNGIK 453 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccc-c-cCCCeEE
Confidence 44668999999999999999999999999998754332210 000 000000 000 0 0122456
Q ss_pred cccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEE
Q psy16304 155 IQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRAR 234 (537)
Q Consensus 155 ~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~ 234 (537)
++++++.|++.. .+-.++++.+++|++++|+|+||||||||+++|+|. +.|+.| +
T Consensus 454 ~~nv~~~~~~~~-----------------~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl----~~~~~G----~ 508 (659)
T TIGR00954 454 FENIPLVTPNGD-----------------VLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGEL----WPVYGG----R 508 (659)
T ss_pred EEeeEEECCCCC-----------------eeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCC----e
Confidence 677777553211 122345678889999999999999999999999999 899999 5
Q ss_pred EEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCC-ccceeeEEeec----Ccc-cccCCcccccccCcCCcccc
Q psy16304 235 VEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPD-SRTCQVYLIMC----GVH-QVSGIPDELTSATHLPLVDF 308 (537)
Q Consensus 235 i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~Ds----~~~-~~~~l~~~l~~~~~l~~~~~ 308 (537)
+.+++ + ..+++++|++.++.. ..+.+.+.... ... ..+.+.+.++..+ +...
T Consensus 509 i~~~~---------------~----~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~-l~~~-- 566 (659)
T TIGR00954 509 LTKPA---------------K----GKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQ-LTHI-- 566 (659)
T ss_pred EeecC---------------C----CcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcC-CHHH--
Confidence 55432 1 457888888775543 11111110000 000 0000001010000 0000
Q ss_pred CCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHHHH-HHHHHhcCCEEEEE
Q psy16304 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRTI-WKQYLGTVSQTLLV 385 (537)
Q Consensus 309 ~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~l-~~~~~~~~~~vIlV 385 (537)
... ..|++... . ....|||||+||+ ++|++++. + |++++|| |++++..... ..+.+++.+.++++
T Consensus 567 ~~~---~~g~~~~~-~-~~~~LSgGqkQRl----~iARal~~-~--p~illLDEpts~LD~~~~~~l~~~l~~~~~tvI~ 634 (659)
T TIGR00954 567 LER---EGGWSAVQ-D-WMDVLSGGEKQRI----AMARLFYH-K--PQFAILDECTSAVSVDVEGYMYRLCREFGITLFS 634 (659)
T ss_pred Hhh---cCCccccc-c-cccCCCHHHHHHH----HHHHHHHc-C--CCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEE
Confidence 000 11111111 1 2467999999999 99999997 5 8999999 9999544332 23444444566777
Q ss_pred EeCCCcchhhhhh-hhhhc
Q psy16304 386 SHSLSGRPDDRCQ-VYLMS 403 (537)
Q Consensus 386 vdshd~~~~~~~~-i~ll~ 403 (537)
+ +|+......++ +++++
T Consensus 635 i-sH~~~~~~~~d~il~l~ 652 (659)
T TIGR00954 635 V-SHRKSLWKYHEYLLYMD 652 (659)
T ss_pred E-eCchHHHHhCCEEEEEe
Confidence 7 88887665544 44443
No 342
>PLN03073 ABC transporter F family; Provisional
Probab=99.65 E-value=3.9e-17 Score=185.06 Aligned_cols=173 Identities=16% Similarity=0.127 Sum_probs=112.1
Q ss_pred cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304 188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ 267 (537)
Q Consensus 188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q 267 (537)
+++|.+.+|++++|+|+||||||||+++|+|. ..|+.| +|.+++. ..+++++|
T Consensus 527 ~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gl----l~p~~G----~I~~~~~-------------------~~igyv~Q 579 (718)
T PLN03073 527 NLNFGIDLDSRIAMVGPNGIGKSTILKLISGE----LQPSSG----TVFRSAK-------------------VRMAVFSQ 579 (718)
T ss_pred ccEEEEcCCCEEEEECCCCCcHHHHHHHHhCC----CCCCCc----eEEECCc-------------------eeEEEEec
Confidence 45678889999999999999999999999999 999999 7766541 13566666
Q ss_pred CCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccc
Q psy16304 268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA 347 (537)
Q Consensus 268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~a 347 (537)
+........... ............ .......+..+|+.+......+.+|||||+||+ +++++
T Consensus 580 ~~~~~l~~~~~~-------------~~~~~~~~~~~~-~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRv----aLAra 641 (718)
T PLN03073 580 HHVDGLDLSSNP-------------LLYMMRCFPGVP-EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRV----AFAKI 641 (718)
T ss_pred cccccCCcchhH-------------HHHHHHhcCCCC-HHHHHHHHHHCCCChHHhcCCccccCHHHHHHH----HHHHH
Confidence 532100000000 000000000000 111223344566653222445889999999999 99999
Q ss_pred eeccCCceEEEEEe--cCchhhHH--HHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEE
Q psy16304 348 RVEYGNKYEVFLYD--LGGSEDFR--TIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYL 410 (537)
Q Consensus 348 ll~~~e~p~lllLD--T~Gl~~~~--~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~ 410 (537)
++. + |++++|| |+|++... .+.+.+ ....++++++ +||+.+...++ ++++++|+++..
T Consensus 642 L~~-~--p~lLLLDEPT~~LD~~s~~~l~~~L-~~~~gtvIiv-SHd~~~i~~~~drv~~l~~G~i~~~ 705 (718)
T PLN03073 642 TFK-K--PHILLLDEPSNHLDLDAVEALIQGL-VLFQGGVLMV-SHDEHLISGSVDELWVVSEGKVTPF 705 (718)
T ss_pred Hhc-C--CCEEEEcCCCCCCCHHHHHHHHHHH-HHcCCEEEEE-ECCHHHHHHhCCEEEEEECCEEEEe
Confidence 996 5 8999999 99994432 233333 3334577777 89998887654 889999998743
No 343
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.65 E-value=3.8e-17 Score=184.27 Aligned_cols=217 Identities=15% Similarity=0.143 Sum_probs=140.3
Q ss_pred hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304 152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN 231 (537)
Q Consensus 152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t 231 (537)
++.++++.+.|+... .. ..+-.++++.+.+|++++|+|+||+|||||+++|+|. ..|+.|
T Consensus 4 ~l~~~nl~~~y~~~~---~~-----------~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl----~~~~~G-- 63 (648)
T PRK10535 4 LLELKDIRRSYPSGE---EQ-----------VEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCL----DKPTSG-- 63 (648)
T ss_pred EEEEeeEEEEeCCCC---CC-----------eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC----CCCCCe--
Confidence 567788888775321 00 0112345677889999999999999999999999999 999999
Q ss_pred eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccc--cCcCCccccC
Q psy16304 232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTS--ATHLPLVDFR 309 (537)
Q Consensus 232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~--~~~l~~~~~~ 309 (537)
++.++| .++..++. .......+..+++++|++.+++..+.. +++...... ...-+...+.
T Consensus 64 --~i~~~g-~~i~~~~~---~~~~~~~~~~i~~v~q~~~l~~~~tv~------------enl~~~~~~~~~~~~~~~~~~ 125 (648)
T PRK10535 64 --TYRVAG-QDVATLDA---DALAQLRREHFGFIFQRYHLLSHLTAA------------QNVEVPAVYAGLERKQRLLRA 125 (648)
T ss_pred --EEEECC-EEcCcCCH---HHHHHHHhccEEEEeCCcccCCCCCHH------------HHHHHHHHHcCCCHHHHHHHH
Confidence 999887 44332221 122222346789999998866543320 000000000 0000001112
Q ss_pred CccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEE
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQT 382 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~v 382 (537)
...+..+|+... ....+.+||+||+||+ +++++++. + |+++++| |+|++.. ..+++.+.+ .+.+
T Consensus 126 ~~~l~~lgl~~~-~~~~~~~LS~Gq~qrv----~LAraL~~-~--P~lLllDEP~~gLD~~s~~~l~~ll~~l~~-~g~t 196 (648)
T PRK10535 126 QELLQRLGLEDR-VEYQPSQLSGGQQQRV----SIARALMN-G--GQVILADEPTGALDSHSGEEVMAILHQLRD-RGHT 196 (648)
T ss_pred HHHHHHCCChhh-hcCCcccCCHHHHHHH----HHHHHHhc-C--CCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCE
Confidence 233445676654 3555889999999999 99999996 5 8999999 8888322 223334333 2456
Q ss_pred EEEEeCCCcchhhhhh-hhhhcCCcEEEEecccch
Q psy16304 383 LLVSHSLSGRPDDRCQ-VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 383 IlVvdshd~~~~~~~~-i~ll~~G~ii~~g~nkdl 416 (537)
++++ +|+.+....++ ++++++|+++..++..+.
T Consensus 197 iliv-sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 230 (648)
T PRK10535 197 VIIV-THDPQVAAQAERVIEIRDGEIVRNPPAQEK 230 (648)
T ss_pred EEEE-CCCHHHHHhCCEEEEEECCEEEeecCcccc
Confidence 6666 88887776555 899999999998887754
No 344
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.65 E-value=1.1e-16 Score=179.64 Aligned_cols=202 Identities=17% Similarity=0.173 Sum_probs=128.1
Q ss_pred ccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCc---eeeeeEEEEECCcEEEEEeecCCCchhhHHHHhh
Q psy16304 185 LPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPT---VGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQY 261 (537)
Q Consensus 185 ~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt---~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~ 261 (537)
+-.++++.+++|+.++|+||||||||||+++|+|. ..|. .| +|.++| ..+. ...+++.
T Consensus 40 iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~----~~~~~~~~G----~i~~~g-~~~~----------~~~~~~~ 100 (617)
T TIGR00955 40 LLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFR----SPKGVKGSG----SVLLNG-MPID----------AKEMRAI 100 (617)
T ss_pred cccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCC----CCCCCccee----EEEECC-EECC----------HHHHhhh
Confidence 34567788899999999999999999999999998 6663 78 888887 3321 1223477
Q ss_pred hhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccch-----hhhhcCCCce
Q psy16304 262 LGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSI-----IKRILGEPII 336 (537)
Q Consensus 262 i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~l-----i~~LSgG~rq 336 (537)
+++++|+..+++..+..-.+.+.. ..+ ... .+...+...+.+..+..+|+.+..++.. ...|||||++
T Consensus 101 i~yv~Q~~~~~~~lTV~e~l~f~~-~~~---~~~---~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrk 173 (617)
T TIGR00955 101 SAYVQQDDLFIPTLTVREHLMFQA-HLR---MPR---RVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERK 173 (617)
T ss_pred ceeeccccccCccCcHHHHHHHHH-hcC---CCC---CCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhh
Confidence 999999988665444310000000 000 000 0000000112233444666665543332 1359999999
Q ss_pred eeecccccccceeccCCceEEEEEe--cCchhhHHH-----HHHHHHhcCCEEEEEEeCCCcc-h-hhhhh-hhhhcCCc
Q psy16304 337 SLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRT-----IWKQYLGTVSQTLLVSHSLSGR-P-DDRCQ-VYLMSCNC 406 (537)
Q Consensus 337 rvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~-----l~~~~~~~~~~vIlVvdshd~~-~-~~~~~-i~ll~~G~ 406 (537)
|+ +++++++. + |++++|| |+|++.... .++++.+. +.+++++ +|+.. . .+..+ ++++++|+
T Consensus 174 Rv----sia~aL~~-~--p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~-g~tvi~~-~hq~~~~i~~~~D~i~ll~~G~ 244 (617)
T TIGR00955 174 RL----AFASELLT-D--PPLLFCDEPTSGLDSFMAYSVVQVLKGLAQK-GKTIICT-IHQPSSELFELFDKIILMAEGR 244 (617)
T ss_pred HH----HHHHHHHc-C--CCEEEeeCCCcchhHHHHHHHHHHHHHHHhC-CCEEEEE-eCCCCHHHHHHhceEEEeeCCe
Confidence 99 99999996 5 8999999 999943332 23444333 3455555 77764 2 34444 88999999
Q ss_pred EEEEecccchhhhhc
Q psy16304 407 QVYLISAKNLSNGFK 421 (537)
Q Consensus 407 ii~~g~nkdl~~~~~ 421 (537)
++..|...++.+.+.
T Consensus 245 ~v~~G~~~~~~~~f~ 259 (617)
T TIGR00955 245 VAYLGSPDQAVPFFS 259 (617)
T ss_pred EEEECCHHHHHHHHH
Confidence 999998887755443
No 345
>PRK13409 putative ATPase RIL; Provisional
Probab=99.64 E-value=4.5e-17 Score=181.21 Aligned_cols=170 Identities=16% Similarity=0.089 Sum_probs=111.8
Q ss_pred cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304 188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ 267 (537)
Q Consensus 188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q 267 (537)
.+++.+.+|++++|+|+||||||||+++|+|. ..|+.| ++.++ . .+++++|
T Consensus 357 ~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl----~~p~~G----~I~~~--~-------------------~i~y~~Q 407 (590)
T PRK13409 357 VEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGV----LKPDEG----EVDPE--L-------------------KISYKPQ 407 (590)
T ss_pred ecceEECCCCEEEEECCCCCCHHHHHHHHhCC----CCCCce----EEEEe--e-------------------eEEEecc
Confidence 45667789999999999999999999999999 999999 66542 1 2566677
Q ss_pred CCCCCCCccceeeEEeecCcccccCCccccccc-CcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccccccc
Q psy16304 268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSA-THLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNR 346 (537)
Q Consensus 268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~-~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~ 346 (537)
+..+....+. .+.+... ............+..+|+... ....+.+|||||+||+ ++|+
T Consensus 408 ~~~~~~~~tv----------------~e~l~~~~~~~~~~~~~~~~L~~l~l~~~-~~~~~~~LSGGe~QRv----aiAr 466 (590)
T PRK13409 408 YIKPDYDGTV----------------EDLLRSITDDLGSSYYKSEIIKPLQLERL-LDKNVKDLSGGELQRV----AIAA 466 (590)
T ss_pred cccCCCCCcH----------------HHHHHHHhhhcChHHHHHHHHHHCCCHHH-HhCCcccCCHHHHHHH----HHHH
Confidence 6543222111 0000000 000000011233446677643 3556899999999999 9999
Q ss_pred ceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEec
Q psy16304 347 ARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLIS 412 (537)
Q Consensus 347 all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~ 412 (537)
+++. + |++++|| |+|++.. ..+++.+.++.+.+++++ +||..+....+ +++++ |++...|.
T Consensus 467 aL~~-~--p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviiv-sHD~~~~~~~aDrvivl~-~~~~~~g~ 536 (590)
T PRK13409 467 CLSR-D--ADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVV-DHDIYMIDYISDRLMVFE-GEPGKHGH 536 (590)
T ss_pred HHhc-C--CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEE-eCCHHHHHHhCCEEEEEc-Ccceeeee
Confidence 9996 5 8999999 9999322 223344444445677777 89988877644 67775 47766655
No 346
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.64 E-value=8.6e-17 Score=173.65 Aligned_cols=185 Identities=14% Similarity=0.081 Sum_probs=113.0
Q ss_pred cccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcc
Q psy16304 186 PTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTV 265 (537)
Q Consensus 186 ~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v 265 (537)
..+++|.+.+|+++||+|+||||||||+++|+|. ..|+.| +|.++| .........+...... ....+.+
T Consensus 40 L~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGL----l~P~sG----eI~I~G-~~~~i~~~~~l~~~lT-V~EnL~l- 108 (549)
T PRK13545 40 LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGV----TMPNKG----TVDIKG-SAALIAISSGLNGQLT-GIENIEL- 108 (549)
T ss_pred EeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCC----CCCCce----EEEECC-EeeeEEeccccCCCCc-HHHHHHh-
Confidence 3456788889999999999999999999999999 999999 898887 2211000000000000 0000000
Q ss_pred ccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccc
Q psy16304 266 SQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN 345 (537)
Q Consensus 266 ~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la 345 (537)
...+.....-.........+..+|+.... ...+..|||||+||+ +++
T Consensus 109 ----------------------------~~~~~~~~~~e~~e~i~elLe~lgL~~~l-d~~~~~LSGGQrQRV----aLA 155 (549)
T PRK13545 109 ----------------------------KGLMMGLTKEKIKEIIPEIIEFADIGKFI-YQPVKTYSSGMKSRL----GFA 155 (549)
T ss_pred ----------------------------hhhhcCCCHHHHHHHHHHHHHHcCChhHh-hCCcccCCHHHHHHH----HHH
Confidence 00000000000000011122344554433 344889999999999 999
Q ss_pred cceeccCCceEEEEEe--cCchhhH--HHHHHHHH--hcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchh
Q psy16304 346 RARVEYGNKYEVFLYD--LGGSEDF--RTIWKQYL--GTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLS 417 (537)
Q Consensus 346 ~all~~~e~p~lllLD--T~Gl~~~--~~l~~~~~--~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~ 417 (537)
++++. + |++++|| |+|++.. ..+++.+. +..+.+++++ +|+.......+ ++++++|++...+.+.++.
T Consensus 156 rAL~~-~--P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIV-SHdl~~i~~l~DrIivL~~GkIv~~G~~~el~ 231 (549)
T PRK13545 156 ISVHI-N--PDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFI-SHSLSQVKSFCTKALWLHYGQVKEYGDIKEVV 231 (549)
T ss_pred HHHHh-C--CCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEE-ECCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99997 5 8999999 9999433 22333221 2224566666 89988776533 8889999999888776654
Q ss_pred h
Q psy16304 418 N 418 (537)
Q Consensus 418 ~ 418 (537)
.
T Consensus 232 ~ 232 (549)
T PRK13545 232 D 232 (549)
T ss_pred h
Confidence 3
No 347
>KOG0054|consensus
Probab=99.63 E-value=7.4e-17 Score=188.99 Aligned_cols=199 Identities=14% Similarity=0.087 Sum_probs=136.0
Q ss_pred cccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcc
Q psy16304 186 PTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTV 265 (537)
Q Consensus 186 ~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v 265 (537)
-+++++.+++||||||||+.|||||||++.|.+. ..|+.| +|.+|| +++.-+. ..++| .+++.+
T Consensus 1156 Lk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl----~e~~~G----~I~IDg-vdI~~ig---L~dLR----srlsII 1219 (1381)
T KOG0054|consen 1156 LKGISFTIKPGEKVGIVGRTGAGKSSLILALFRL----VEPAEG----EILIDG-VDISKIG---LHDLR----SRLSII 1219 (1381)
T ss_pred hcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHh----cCccCC----eEEEcC-eeccccc---HHHHH----hcCeee
Confidence 4467788999999999999999999999999999 999999 999998 6665443 35666 889999
Q ss_pred ccCCCCCCCccceeeEEee-cCcccccCCcccccccCcCCccccCCccEE-EeccCccCccchhhhhcCCCceeeecccc
Q psy16304 266 SQTPLGRPDSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPIL-VLGLDNAGKSSIIKRILGEPIISLVPTVG 343 (537)
Q Consensus 266 ~Q~~~l~~~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~-llGl~~~gKs~li~~LSgG~rqrvs~ti~ 343 (537)
||+|.+|..-.. +-.| -+....+++++.++...--+........+. .+... -..||-||||-+ .
T Consensus 1220 PQdPvLFsGTvR---~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~eg-------G~N~SvGQRQLl----C 1285 (1381)
T KOG0054|consen 1220 PQDPVLFSGTVR---FNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEG-------GENFSVGQRQLL----C 1285 (1381)
T ss_pred CCCCceecCccc---cccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCC-------CccCChHHHHHH----H
Confidence 999998854211 2223 111111112222211100000000000010 12111 245999999999 9
Q ss_pred cccceeccCCceEEEEEe--cCchhhHHH-HHHHHHh-c-CCEEEEEEeCCCcchhhhhh-hhhhcCCcEEEEecccchh
Q psy16304 344 FNRARVEYGNKYEVFLYD--LGGSEDFRT-IWKQYLG-T-VSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLISAKNLS 417 (537)
Q Consensus 344 la~all~~~e~p~lllLD--T~Gl~~~~~-l~~~~~~-~-~~~vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g~nkdl~ 417 (537)
+|||++. + .++++|| |+..+...+ ++++-.+ + ++.+++.+ .|...+.-+++ +.+|++|+++.+++|..|.
T Consensus 1286 LARALLr-~--skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltI-AHRl~TVmd~DrVlVld~G~v~EfdsP~~Ll 1361 (1381)
T KOG0054|consen 1286 LARALLR-K--SKILVLDEATASVDPETDALIQKTIREEFKDCTVLTI-AHRLNTVMDSDRVLVLDAGRVVEFDSPAELL 1361 (1381)
T ss_pred HHHHHhc-c--CCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEE-eeccchhhhcCeEEEeeCCeEeecCChHHHH
Confidence 9999997 4 5999999 999854443 3343333 2 35688888 99999887766 9999999999999999885
Q ss_pred h
Q psy16304 418 N 418 (537)
Q Consensus 418 ~ 418 (537)
+
T Consensus 1362 ~ 1362 (1381)
T KOG0054|consen 1362 S 1362 (1381)
T ss_pred h
Confidence 3
No 348
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.62 E-value=9.9e-17 Score=163.14 Aligned_cols=184 Identities=15% Similarity=0.209 Sum_probs=110.0
Q ss_pred cccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcc
Q psy16304 186 PTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTV 265 (537)
Q Consensus 186 ~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v 265 (537)
-..+++.+.+|++++|+|+||||||||+++|+|. +.|+.| +|.++|. ++++
T Consensus 53 L~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl----~~p~~G----~I~i~g~---------------------i~yv 103 (282)
T cd03291 53 LKNINLKIEKGEMLAITGSTGSGKTSLLMLILGE----LEPSEG----KIKHSGR---------------------ISFS 103 (282)
T ss_pred eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCc----EEEECCE---------------------EEEE
Confidence 4456788889999999999999999999999999 999999 8887751 3444
Q ss_pred ccCCCCCCC-ccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEe--ccCccCccchhhhhcCCCceeeeccc
Q psy16304 266 SQTPLGRPD-SRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVL--GLDNAGKSSIIKRILGEPIISLVPTV 342 (537)
Q Consensus 266 ~Q~~~l~~~-~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~ll--Gl~~~gKs~li~~LSgG~rqrvs~ti 342 (537)
+|++.++.. ..+.+.+........ ..+.+... ++. ..+..+ +.... ....+..||+||+||+
T Consensus 104 ~q~~~l~~~tv~enl~~~~~~~~~~---~~~~l~~~-~l~------~~l~~~~~~~~~~-~~~~~~~LSgGq~qrv---- 168 (282)
T cd03291 104 SQFSWIMPGTIKENIIFGVSYDEYR---YKSVVKAC-QLE------EDITKFPEKDNTV-LGEGGITLSGGQRARI---- 168 (282)
T ss_pred eCcccccccCHHHHhhcccccCHHH---HHHHHHHh-CCH------HHHHhccccccce-ecCCCCcCCHHHHHHH----
Confidence 554433221 000000000000000 00000000 000 000000 00000 0112568999999999
Q ss_pred ccccceeccCCceEEEEEe--cCchhhHHH--HHHHHHh--cCCEEEEEEeCCCcchhhhhh-hhhhcCCcEEEEecccc
Q psy16304 343 GFNRARVEYGNKYEVFLYD--LGGSEDFRT--IWKQYLG--TVSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLISAKN 415 (537)
Q Consensus 343 ~la~all~~~e~p~lllLD--T~Gl~~~~~--l~~~~~~--~~~~vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g~nkd 415 (537)
+++++++. + |+++++| |+|++.... +.+.+.+ ..+.+++++ +|+......++ ++++++|+++..+...+
T Consensus 169 ~lAraL~~-~--p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiii-sH~~~~~~~~d~i~~l~~G~i~~~g~~~~ 244 (282)
T cd03291 169 SLARAVYK-D--ADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILV-TSKMEHLKKADKILILHEGSSYFYGTFSE 244 (282)
T ss_pred HHHHHHhc-C--CCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEE-eCChHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999996 5 8999999 999943332 2232221 123566666 78877765544 88999999988887766
Q ss_pred hh
Q psy16304 416 LS 417 (537)
Q Consensus 416 l~ 417 (537)
+.
T Consensus 245 ~~ 246 (282)
T cd03291 245 LQ 246 (282)
T ss_pred HH
Confidence 63
No 349
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.62 E-value=9.8e-17 Score=156.71 Aligned_cols=179 Identities=11% Similarity=0.028 Sum_probs=104.8
Q ss_pred ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEE-ECCcEEEEEeecCCCchhhHHHHhhhhcc
Q psy16304 187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVE-YGNKYEVFLYDLGGSEDFRTIWKQYLGTV 265 (537)
Q Consensus 187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~-i~g~~~i~~~D~~G~~~~r~~~~~~i~~v 265 (537)
.++++.+.+|++++|+|+||||||||+++|+|. ..|++| ++. +++ ..+ .. +
T Consensus 4 ~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl----~~~~sG----~i~~~~~-~~~---~~-~--------------- 55 (213)
T PRK15177 4 DKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGL----DAPDEG----DFIGLRG-DAL---PL-G--------------- 55 (213)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC----ccCCCC----CEEEecC-cee---cc-c---------------
Confidence 356788889999999999999999999999999 899999 665 444 211 11 0
Q ss_pred ccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccc
Q psy16304 266 SQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN 345 (537)
Q Consensus 266 ~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la 345 (537)
+.+.+++..+. .+++....... ..............+++... ....+..||+||+||+ +++
T Consensus 56 -~~~~l~~~ltv------------~enl~~~~~~~-~~~~~~~~~~~~~~~~l~~~-~~~~~~~lS~G~~qrv----~la 116 (213)
T PRK15177 56 -ANSFILPGLTG------------EENARMMASLY-GLDGDEFSHFCYQLTQLEQC-YTDRVSEYSVTMKTHL----AFA 116 (213)
T ss_pred -cccccCCcCcH------------HHHHHHHHHHc-CCCHHHHHHHHHHHhChhHH-hhchHhhcCHHHHHHH----HHH
Confidence 01111111000 00000000000 00000000000112344433 3455889999999999 999
Q ss_pred cceeccCCceEEEEEe--cCchhhH--HHHHHHHHhc-CCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccch
Q psy16304 346 RARVEYGNKYEVFLYD--LGGSEDF--RTIWKQYLGT-VSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 346 ~all~~~e~p~lllLD--T~Gl~~~--~~l~~~~~~~-~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl 416 (537)
++++. + |+++++| +++++.. ..+++.+.+. .+.+++++ +|++......+ ++++++|+++..+...+.
T Consensus 117 ~al~~-~--p~llllDEP~~~lD~~~~~~~~~~l~~~~~~~~ii~v-sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 190 (213)
T PRK15177 117 INLLL-P--CRLYIADGKLYTGDNATQLRMQAALACQLQQKGLIVL-THNPRLIKEHCHAFGVLLHGKITMCEDLAQA 190 (213)
T ss_pred HHHhc-C--CCEEEECCCCccCCHHHHHHHHHHHHHHhhCCcEEEE-ECCHHHHHHhcCeeEEEECCeEEEeCCHHHH
Confidence 99996 5 8999999 6777322 2222322211 12345666 89988776433 888999999876555444
No 350
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.61 E-value=7.2e-16 Score=141.45 Aligned_cols=122 Identities=23% Similarity=0.255 Sum_probs=90.4
Q ss_pred cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304 188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ 267 (537)
Q Consensus 188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q 267 (537)
.+++.+.+|++++|+|+||+|||||+++|+|. ..|+.| ++.+++ . ..+++++|
T Consensus 18 ~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~----~~~~~G----~i~~~~-~------------------~~i~~~~~ 70 (144)
T cd03221 18 DISLTINPGDRIGLVGRNGAGKSTLLKLIAGE----LEPDEG----IVTWGS-T------------------VKIGYFEQ 70 (144)
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHcCC----CCCCce----EEEECC-e------------------EEEEEEcc
Confidence 45677889999999999999999999999999 999999 887765 1 11333111
Q ss_pred CCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccc
Q psy16304 268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA 347 (537)
Q Consensus 268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~a 347 (537)
||+||+||+ +++++
T Consensus 71 --------------------------------------------------------------lS~G~~~rv----~lara 84 (144)
T cd03221 71 --------------------------------------------------------------LSGGEKMRL----ALAKL 84 (144)
T ss_pred --------------------------------------------------------------CCHHHHHHH----HHHHH
Confidence 999999999 99999
Q ss_pred eeccCCceEEEEEe--cCchhhHHH-HHHHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCc
Q psy16304 348 RVEYGNKYEVFLYD--LGGSEDFRT-IWKQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNC 406 (537)
Q Consensus 348 ll~~~e~p~lllLD--T~Gl~~~~~-l~~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ 406 (537)
++. + |+++++| ++|++.... .+.+++++...+++++ +|+.+..... + ++++++|+
T Consensus 85 l~~-~--p~illlDEP~~~LD~~~~~~l~~~l~~~~~til~~-th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 85 LLE-N--PNLLLLDEPTNHLDLESIEALEEALKEYPGTVILV-SHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred Hhc-C--CCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEE-ECCHHHHHHhCCEEEEEeCCC
Confidence 996 5 8999999 889843322 2233344334567777 8888776553 3 66666664
No 351
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.61 E-value=1.4e-16 Score=194.21 Aligned_cols=251 Identities=15% Similarity=0.139 Sum_probs=153.9
Q ss_pred hhHHHHHhhhcccccccccccccccCccccccccCCCCCCchhHHHHHHHHHHHHhhhcccccCCCcccCCCCCCCCCcc
Q psy16304 95 EIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAPTFEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDDPAPT 174 (537)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~~~~~~~ 174 (537)
-..|+..+...+..++....+++|+.+++..+..-.+....-.. .......+.++++...|+... .
T Consensus 586 l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~-------~~~~~~~i~~~~~~~~~~~~~---~---- 651 (1522)
T TIGR00957 586 LRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIERRTI-------KPGEGNSITVHNATFTWARDL---P---- 651 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccccccc-------CCCCCCcEEEEEeEEEcCCCC---C----
Confidence 44699999999999999999999999998744221000000000 000011456667766654210 0
Q ss_pred hhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchh
Q psy16304 175 FENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 254 (537)
Q Consensus 175 ~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~ 254 (537)
..-.++++.+++|++++|+|+||||||||+++|.|. +.|+.| ++.++|
T Consensus 652 ---------~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~----~~~~~G----~i~~~g--------------- 699 (1522)
T TIGR00957 652 ---------PTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAE----MDKVEG----HVHMKG--------------- 699 (1522)
T ss_pred ---------ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CccCCc----EEEECC---------------
Confidence 123345678889999999999999999999999999 999999 777664
Q ss_pred hHHHHhhhhccccCCCCCCC-ccceeeEEeecCcccccCCcccc---cccCcCCccccCCccEEEeccCccCccchhhhh
Q psy16304 255 RTIWKQYLGTVSQTPLGRPD-SRTCQVYLIMCGVHQVSGIPDEL---TSATHLPLVDFRSVPILVLGLDNAGKSSIIKRI 330 (537)
Q Consensus 255 r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~Ds~~~~~~~l~~~l---~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~L 330 (537)
.++|++|++.++.. ..+++.+....+.++++.+.+.. ..++.++.. .-..+|. ....|
T Consensus 700 ------~i~yv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g-----~~t~ig~-------~g~~L 761 (1522)
T TIGR00957 700 ------SVAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSG-----DRTEIGE-------KGVNL 761 (1522)
T ss_pred ------EEEEEcCCccccCCcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCC-----CCceecC-------CCCCC
Confidence 26777777665432 22222211110011111000000 000000000 0001221 14569
Q ss_pred cCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH--HHHHHHHh----cCCEEEEEEeCCCcchhhhhh-hhh
Q psy16304 331 LGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR--TIWKQYLG----TVSQTLLVSHSLSGRPDDRCQ-VYL 401 (537)
Q Consensus 331 SgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~--~l~~~~~~----~~~~vIlVvdshd~~~~~~~~-i~l 401 (537)
||||+||+ ++||+++. + |++++|| |++++... .+++.+.+ ..+.+++++ +|+......++ +++
T Consensus 762 SGGQkqRi----aLARAl~~-~--~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlv-TH~~~~l~~~D~ii~ 833 (1522)
T TIGR00957 762 SGGQKQRV----SLARAVYS-N--ADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILV-THGISYLPQVDVIIV 833 (1522)
T ss_pred CHHHHHHH----HHHHHHhc-C--CCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEE-eCChhhhhhCCEEEE
Confidence 99999999 99999996 5 8999999 99994433 33344432 123456666 78877776666 899
Q ss_pred hcCCcEEEEecccchh
Q psy16304 402 MSCNCQVYLISAKNLS 417 (537)
Q Consensus 402 l~~G~ii~~g~nkdl~ 417 (537)
+++|++...|+..++.
T Consensus 834 l~~G~i~~~g~~~~l~ 849 (1522)
T TIGR00957 834 MSGGKISEMGSYQELL 849 (1522)
T ss_pred ecCCeEEeeCCHHHHH
Confidence 9999999998877764
No 352
>KOG0066|consensus
Probab=99.60 E-value=2.3e-17 Score=169.71 Aligned_cols=208 Identities=15% Similarity=0.116 Sum_probs=138.6
Q ss_pred ccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccC
Q psy16304 189 LSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQT 268 (537)
Q Consensus 189 ~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~ 268 (537)
-++.+-.|.++|||||||-||||||+.|+...++ +.|... .+... ..+..-+++.....-..-..+...+-.+
T Consensus 283 A~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~Rala-IPpnID----vLlCE--QEvvad~t~Ai~tvl~aD~kRl~lLeee 355 (807)
T KOG0066|consen 283 ASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALA-IPPNID----VLLCE--QEVVADSTSAIDTVLKADKKRLALLEEE 355 (807)
T ss_pred cceEEEecceecccCCCCCchHHHHHHHHhhhcc-CCCCCc----eEeee--eeeeecCcHHHHHHHHhhHHHHHHHHHH
Confidence 3466668999999999999999999999875433 334443 11111 1222222221110000000011110000
Q ss_pred CCCCCCccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccc
Q psy16304 269 PLGRPDSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA 347 (537)
Q Consensus 269 ~~l~~~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~a 347 (537)
..+... + .-=| +..++...+.+.+..++....+.++...+..+|++..........|||||++|+ .+|++
T Consensus 356 ~~L~~q----~-e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMRv----SLARA 426 (807)
T KOG0066|consen 356 AKLMSQ----I-EEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMRV----SLARA 426 (807)
T ss_pred HHHHHH----H-HcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCceeeeh----hHHHH
Confidence 000000 0 0001 223445556666666666666777777788999988887888899999999999 99999
Q ss_pred eeccCCceEEEEEe--cCchhhHHHHH-HHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccch
Q psy16304 348 RVEYGNKYEVFLYD--LGGSEDFRTIW-KQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 348 ll~~~e~p~lllLD--T~Gl~~~~~l~-~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl 416 (537)
++. . |.++.|| |++++.-..+| ..|+.....+++++ +||..+++.+| ++-++..++..+-+|+.+
T Consensus 427 Lfl-E--PTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLLIV-SHDQgFLD~VCtdIIHLD~qkLhyYrGNY~~ 496 (807)
T KOG0066|consen 427 LFL-E--PTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIV-SHDQGFLDSVCTDIIHLDNQKLHYYRGNYTL 496 (807)
T ss_pred Hhc-C--ceeeeecCCccccccceeeehhhHHhhhhheeEEE-ecccchHHHHHHHHhhhhhhhhhhhcchHHH
Confidence 986 4 8999999 99998888888 89999888889998 99999999988 777788889999999865
No 353
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=1.7e-16 Score=152.57 Aligned_cols=202 Identities=13% Similarity=0.085 Sum_probs=126.1
Q ss_pred ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304 187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS 266 (537)
Q Consensus 187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~ 266 (537)
+.+++++++|++.+|+||||||||||.+.|+|. ..|.+|.| +|.++| .++...+. .++.+ ..+...|
T Consensus 21 kgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~--p~Y~Vt~G----~I~~~G-edI~~l~~--~ERAr----~GifLaf 87 (251)
T COG0396 21 KGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGH--PKYEVTEG----EILFDG-EDILELSP--DERAR----AGIFLAF 87 (251)
T ss_pred cCcceeEcCCcEEEEECCCCCCHHHHHHHHhCC--CCceEecc----eEEECC-cccccCCH--hHHHh----cCCEEee
Confidence 456788999999999999999999999999996 33689999 999997 55443332 23333 6677788
Q ss_pred cCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchh-hhhcCCCceeeecccccc
Q psy16304 267 QTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSII-KRILGEPIISLVPTVGFN 345 (537)
Q Consensus 267 Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li-~~LSgG~rqrvs~ti~la 345 (537)
|.|..++..+..-.+..-....+... . + ...........+..++++..--.+.+ ..||||++.|. .+.
T Consensus 88 Q~P~ei~GV~~~~fLr~a~n~~~~~~--~----~-~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~----Eil 156 (251)
T COG0396 88 QYPVEIPGVTNSDFLRAAMNARRGAR--G----I-LPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRN----EIL 156 (251)
T ss_pred cCCccCCCeeHHHHHHHHHHhhhccc--c----c-cHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHH----HHH
Confidence 99886655333111110000000000 0 0 00001111222334555442222223 35999999999 888
Q ss_pred cceeccCCceEEEEEe--cCch--hhHHH---HHHHHHhcCCEEEEEEeCCCcchhhhhh---hhhhcCCcEEEEecccc
Q psy16304 346 RARVEYGNKYEVFLYD--LGGS--EDFRT---IWKQYLGTVSQTLLVSHSLSGRPDDRCQ---VYLMSCNCQVYLISAKN 415 (537)
Q Consensus 346 ~all~~~e~p~lllLD--T~Gl--~~~~~---l~~~~~~~~~~vIlVvdshd~~~~~~~~---i~ll~~G~ii~~g~nkd 415 (537)
..++. . |++.+|| -+|+ +..+. ....+... +..++++ ||...-++.+. +.+|-+|+++..|.+ +
T Consensus 157 Q~~~l-e--Pkl~ILDE~DSGLDIdalk~V~~~i~~lr~~-~~~~liI-THy~rll~~i~pD~vhvl~~GrIv~sG~~-e 230 (251)
T COG0396 157 QLLLL-E--PKLAILDEPDSGLDIDALKIVAEGINALREE-GRGVLII-THYQRLLDYIKPDKVHVLYDGRIVKSGDP-E 230 (251)
T ss_pred HHHhc-C--CCEEEecCCCcCccHHHHHHHHHHHHHHhcC-CCeEEEE-ecHHHHHhhcCCCEEEEEECCEEEecCCH-H
Confidence 77775 5 8999999 6777 33333 33444444 4555566 67777777663 899999999999988 6
Q ss_pred hhh
Q psy16304 416 LSN 418 (537)
Q Consensus 416 l~~ 418 (537)
+..
T Consensus 231 l~~ 233 (251)
T COG0396 231 LAE 233 (251)
T ss_pred HHH
Confidence 643
No 354
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.60 E-value=1.9e-16 Score=158.91 Aligned_cols=181 Identities=14% Similarity=0.130 Sum_probs=103.3
Q ss_pred CCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCc--hh-hHHHH--hhhhcccc
Q psy16304 193 DFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSE--DF-RTIWK--QYLGTVSQ 267 (537)
Q Consensus 193 ~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~--~~-r~~~~--~~i~~v~Q 267 (537)
+.+|++++|+|+||||||||+++|+|. +.|+.| +|.+.+.+....-...|.. .. ....+ ..+++++|
T Consensus 23 i~~Ge~~~IvG~nGsGKSTLlk~l~Gl----~~p~~G----~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~ 94 (255)
T cd03236 23 PREGQVLGLVGPNGIGKSTALKILAGK----LKPNLG----KFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKPQ 94 (255)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCC----cCCCCc----eEeeccccchhhhhccCchhhhhhHHhhhcccceeeecc
Confidence 679999999999999999999999999 999999 7753221110000011111 11 01111 12455566
Q ss_pred CCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccc
Q psy16304 268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA 347 (537)
Q Consensus 268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~a 347 (537)
....++.... + ++.+.+ ............+..+|+.... ...+..||+||+|++ +++++
T Consensus 95 ~~~~~~~~~~------~-------~i~~~l---~~~~~~~~~~~~l~~~gl~~~~-~~~~~~LS~G~~qrv----~lara 153 (255)
T cd03236 95 YVDLIPKAVK------G-------KVGELL---KKKDERGKLDELVDQLELRHVL-DRNIDQLSGGELQRV----AIAAA 153 (255)
T ss_pred hhccCchHHH------H-------HHHHHh---chhHHHHHHHHHHHHcCCchhh-cCChhhCCHHHHHHH----HHHHH
Confidence 5443321000 0 000000 0000011112233345665443 345789999999999 99999
Q ss_pred eeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhh-hh-hhhhcCCcEE
Q psy16304 348 RVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDR-CQ-VYLMSCNCQV 408 (537)
Q Consensus 348 ll~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~-~~-i~ll~~G~ii 408 (537)
++. + |+++++| |++++.. ...++.+.+. +.+++++ +|++..... ++ +++++ |++.
T Consensus 154 l~~-~--p~illlDEPts~LD~~~~~~l~~~l~~l~~~-~~tIIii-SHd~~~~~~~ad~i~~l~-~~~~ 217 (255)
T cd03236 154 LAR-D--ADFYFFDEPSSYLDIKQRLNAARLIRELAED-DNYVLVV-EHDLAVLDYLSDYIHCLY-GEPG 217 (255)
T ss_pred HHh-C--CCEEEEECCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEE-ECCHHHHHHhCCEEEEEC-CCCC
Confidence 996 5 8999999 9999433 2333444333 3456666 899887775 33 66664 4454
No 355
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.58 E-value=1.6e-15 Score=140.81 Aligned_cols=131 Identities=18% Similarity=0.277 Sum_probs=91.0
Q ss_pred cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304 188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ 267 (537)
Q Consensus 188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q 267 (537)
.+++.+.+|++++|+|+||+|||||+++|+|. +.|+.| ++.+++ ..+..++ ...+...+++++|
T Consensus 17 ~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~----~~~~~G----~i~~~~-~~~~~~~-------~~~~~~~i~~~~q 80 (157)
T cd00267 17 NVSLTLKAGEIVALVGPNGSGKSTLLRAIAGL----LKPTSG----EILIDG-KDIAKLP-------LEELRRRIGYVPQ 80 (157)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCcc----EEEECC-EEcccCC-------HHHHHhceEEEee
Confidence 34566789999999999999999999999999 899999 888887 3321110 0011122332111
Q ss_pred CCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccc
Q psy16304 268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA 347 (537)
Q Consensus 268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~a 347 (537)
||+||++|+ .++++
T Consensus 81 --------------------------------------------------------------lS~G~~~r~----~l~~~ 94 (157)
T cd00267 81 --------------------------------------------------------------LSGGQRQRV----ALARA 94 (157)
T ss_pred --------------------------------------------------------------CCHHHHHHH----HHHHH
Confidence 999999999 99999
Q ss_pred eeccCCceEEEEEe--cCchhhH--HHHH---HHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCC
Q psy16304 348 RVEYGNKYEVFLYD--LGGSEDF--RTIW---KQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCN 405 (537)
Q Consensus 348 ll~~~e~p~lllLD--T~Gl~~~--~~l~---~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G 405 (537)
++. + |+++++| |+|++.. ..++ ..+.+. ..+++++ +|+....... + ++.+++|
T Consensus 95 l~~-~--~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~-~~tii~~-sh~~~~~~~~~d~i~~l~~g 156 (157)
T cd00267 95 LLL-N--PDLLLLDEPTSGLDPASRERLLELLRELAEE-GRTVIIV-THDPELAELAADRVIVLKDG 156 (157)
T ss_pred Hhc-C--CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEE-eCCHHHHHHhCCEEEEEeCc
Confidence 996 5 8999999 8888432 2222 333333 3566676 8998887765 3 5655554
No 356
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.58 E-value=5.8e-16 Score=187.00 Aligned_cols=208 Identities=13% Similarity=0.144 Sum_probs=126.8
Q ss_pred cccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcc
Q psy16304 186 PTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTV 265 (537)
Q Consensus 186 ~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v 265 (537)
-.++++.+++|+.++|+||||||||||+|+|+|.......|++| +|.++| ..+. ......+..++++
T Consensus 77 L~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G----~I~~~G-~~~~--------~~~~~~r~~i~yv 143 (1394)
T TIGR00956 77 LKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEG----VITYDG-ITPE--------EIKKHYRGDVVYN 143 (1394)
T ss_pred eeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCcee----EEEECC-EehH--------HHHhhcCceeEEe
Confidence 34567788899999999999999999999999982222257899 999887 3321 1111122458999
Q ss_pred ccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccc---c-CCccEEEeccCccCcc----chhhhhcCCCcee
Q psy16304 266 SQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVD---F-RSVPILVLGLDNAGKS----SIIKRILGEPIIS 337 (537)
Q Consensus 266 ~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~---~-~~~~L~llGl~~~gKs----~li~~LSgG~rqr 337 (537)
+|+..+++.++..-.+.+. ...+.. . ....+..... + .+..+..+|+.+...+ ..+..||||||||
T Consensus 144 ~Q~d~~~~~lTV~E~l~f~-~~~~~~--~---~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkR 217 (1394)
T TIGR00956 144 AETDVHFPHLTVGETLDFA-ARCKTP--Q---NRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKR 217 (1394)
T ss_pred ccccccCCCCCHHHHHHHH-HHhCCC--C---CCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchH
Confidence 9987766554331000000 000000 0 0000010000 0 1223445677654322 2367899999999
Q ss_pred eecccccccceeccCCceEEEEEe--cCchhhHHH-----HHHHHHhcCCEEEEEEeCCCc-chhh-hhh-hhhhcCCcE
Q psy16304 338 LVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRT-----IWKQYLGTVSQTLLVSHSLSG-RPDD-RCQ-VYLMSCNCQ 407 (537)
Q Consensus 338 vs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~-----l~~~~~~~~~~vIlVvdshd~-~~~~-~~~-i~ll~~G~i 407 (537)
+ .++++++. + |++++|| |+|++.... .++++.+..+.+++++ +|+. .... ..+ ++++++|++
T Consensus 218 v----sIA~aL~~-~--p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~-~Hq~~~~i~~l~D~v~~L~~G~i 289 (1394)
T TIGR00956 218 V----SIAEASLG-G--AKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVA-IYQCSQDAYELFDKVIVLYEGYQ 289 (1394)
T ss_pred H----HHHHHHHh-C--CCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEE-ecCCCHHHHHhhceEEEEeCCeE
Confidence 9 99999996 5 8999999 999943332 3344444334455555 6764 3333 333 889999999
Q ss_pred EEEecccchhhhh
Q psy16304 408 VYLISAKNLSNGF 420 (537)
Q Consensus 408 i~~g~nkdl~~~~ 420 (537)
+..|...+....+
T Consensus 290 v~~G~~~~~~~yF 302 (1394)
T TIGR00956 290 IYFGPADKAKQYF 302 (1394)
T ss_pred EEECCHHHHHHHH
Confidence 9888877765444
No 357
>PLN03140 ABC transporter G family member; Provisional
Probab=99.58 E-value=1.5e-15 Score=183.32 Aligned_cols=207 Identities=18% Similarity=0.181 Sum_probs=127.6
Q ss_pred ccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCc---eeeeeEEEEECCcEEEEEeecCCCchhhHHHHhh
Q psy16304 185 LPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPT---VGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQY 261 (537)
Q Consensus 185 ~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt---~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~ 261 (537)
+-.++++.+++|+.++|+|||||||||||++|+|. ..|+ +| +|.++| ..+.... .++.
T Consensus 180 IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~----l~~~~~~~G----~I~~nG-~~~~~~~----------~~~~ 240 (1470)
T PLN03140 180 ILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGK----LDPSLKVSG----EITYNG-YRLNEFV----------PRKT 240 (1470)
T ss_pred eccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCC----CCCCCccee----EEEECC-Eechhhc----------ccce
Confidence 45567788999999999999999999999999999 7887 89 899887 4432111 1256
Q ss_pred hhccccCCCCCCCccceeeEEeecC----cccccCCcccccccC---------cC------------CccccCCccEEEe
Q psy16304 262 LGTVSQTPLGRPDSRTCQVYLIMCG----VHQVSGIPDELTSAT---------HL------------PLVDFRSVPILVL 316 (537)
Q Consensus 262 i~~v~Q~~~l~~~~~~~il~v~Ds~----~~~~~~l~~~l~~~~---------~l------------~~~~~~~~~L~ll 316 (537)
+++++|+..+++.++..-.+.+... ..+.. ....+...+ .. +.....+..+..+
T Consensus 241 i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~-~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~l 319 (1470)
T PLN03140 241 SAYISQNDVHVGVMTVKETLDFSARCQGVGTRYD-LLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKIL 319 (1470)
T ss_pred eEEecccccCCCcCcHHHHHHHHHHhcCCCCccc-chhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHc
Confidence 8999998776655433110000000 00000 000000000 00 0000012234467
Q ss_pred ccCccCc----cchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHHH-----HHHHHHhcCCEEEEE
Q psy16304 317 GLDNAGK----SSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRT-----IWKQYLGTVSQTLLV 385 (537)
Q Consensus 317 Gl~~~gK----s~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~-----l~~~~~~~~~~vIlV 385 (537)
|+.+... +..+..+|||||+|+ .++++++. + |++++|| |+|++.... .++++.+..+.++++
T Consensus 320 GL~~~~~t~vg~~~~rglSGGerkRV----sia~aL~~-~--p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tvii 392 (1470)
T PLN03140 320 GLDICKDTIVGDEMIRGISGGQKKRV----TTGEMIVG-P--TKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLM 392 (1470)
T ss_pred CCccccCceeCCccccCCCcccceee----eehhhhcC-C--CcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 7765321 334788999999999 99999996 5 8999999 999943332 334444433445666
Q ss_pred EeCCCc--chhhhhh-hhhhcCCcEEEEecccchhhh
Q psy16304 386 SHSLSG--RPDDRCQ-VYLMSCNCQVYLISAKNLSNG 419 (537)
Q Consensus 386 vdshd~--~~~~~~~-i~ll~~G~ii~~g~nkdl~~~ 419 (537)
+ +|+. +..+..+ ++++++|+++..|...+....
T Consensus 393 s-~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~~~y 428 (1470)
T PLN03140 393 S-LLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEF 428 (1470)
T ss_pred E-ecCCCHHHHHHhheEEEeeCceEEEeCCHHHHHHH
Confidence 6 6654 2333333 899999999988877766543
No 358
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.58 E-value=6.7e-16 Score=186.45 Aligned_cols=184 Identities=14% Similarity=0.210 Sum_probs=120.6
Q ss_pred ccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCcccc---CceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhh
Q psy16304 185 LPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLV---PTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQY 261 (537)
Q Consensus 185 ~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~---Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~ 261 (537)
+-.++++.+++|++++|+||||||||||+++|+|. .. |++| +|.++| ..+ + .. +++.
T Consensus 778 iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~----~~~g~~~~G----~I~i~G-~~~---~----~~----~~~~ 837 (1394)
T TIGR00956 778 ILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAER----VTTGVITGG----DRLVNG-RPL---D----SS----FQRS 837 (1394)
T ss_pred eeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCC----CCCCCccee----EEEECC-EEC---C----hh----hhcc
Confidence 34567788899999999999999999999999998 65 7889 898887 433 1 12 2367
Q ss_pred hhccccCCCCCCCccceeeEEeecCcccccCCccccccc------CcCCc---cccCCccEEEeccCccCccchhh----
Q psy16304 262 LGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSA------THLPL---VDFRSVPILVLGLDNAGKSSIIK---- 328 (537)
Q Consensus 262 i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~------~~l~~---~~~~~~~L~llGl~~~gKs~li~---- 328 (537)
+++++|+..+++..+. .+.+... ..... ....+..+..+|+.+..++ .+.
T Consensus 838 i~yv~Q~~~~~~~~Tv----------------~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~-~v~~~~~ 900 (1394)
T TIGR00956 838 IGYVQQQDLHLPTSTV----------------RESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADA-VVGVPGE 900 (1394)
T ss_pred eeeecccccCCCCCCH----------------HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCC-eeCCCCC
Confidence 8999998765443332 1111100 00000 0112233445666554332 244
Q ss_pred hhcCCCceeeecccccccceeccCCceE-EEEEe--cCchhhHHH-----HHHHHHhcCCEEEEEEeCCCcchh--hhhh
Q psy16304 329 RILGEPIISLVPTVGFNRARVEYGNKYE-VFLYD--LGGSEDFRT-----IWKQYLGTVSQTLLVSHSLSGRPD--DRCQ 398 (537)
Q Consensus 329 ~LSgG~rqrvs~ti~la~all~~~e~p~-lllLD--T~Gl~~~~~-----l~~~~~~~~~~vIlVvdshd~~~~--~~~~ 398 (537)
.|||||+||+ +++++++. + |+ +++|| |+|++.... .++++.++ +.+|+++ +|+.... ...+
T Consensus 901 ~LSgGqrqRl----~Ia~aL~~-~--P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~-g~tvI~t-~H~~~~~~~~~~D 971 (1394)
T TIGR00956 901 GLNVEQRKRL----TIGVELVA-K--PKLLLFLDEPTSGLDSQTAWSICKLMRKLADH-GQAILCT-IHQPSAILFEEFD 971 (1394)
T ss_pred CCCHHHhhHH----HHHHHHHc-C--CCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEE-ecCCCHHHHHhcC
Confidence 6999999999 99999996 5 75 99999 999943332 23344333 3456666 7887753 3334
Q ss_pred -hhhhcCC-cEEEEeccc
Q psy16304 399 -VYLMSCN-CQVYLISAK 414 (537)
Q Consensus 399 -i~ll~~G-~ii~~g~nk 414 (537)
++++++| +++..|...
T Consensus 972 ~vl~L~~GG~iv~~G~~~ 989 (1394)
T TIGR00956 972 RLLLLQKGGQTVYFGDLG 989 (1394)
T ss_pred EEEEEcCCCEEEEECCcc
Confidence 8888887 998888764
No 359
>PRK13409 putative ATPase RIL; Provisional
Probab=99.58 E-value=4.3e-16 Score=173.44 Aligned_cols=169 Identities=16% Similarity=0.176 Sum_probs=101.6
Q ss_pred cCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEE-----------ECCcEEEEEeecCCCchhh-HHH-
Q psy16304 192 FDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVE-----------YGNKYEVFLYDLGGSEDFR-TIW- 258 (537)
Q Consensus 192 ~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~-----------i~g~~~i~~~D~~G~~~~r-~~~- 258 (537)
.+.+|+++||+|+||||||||+++|+|. +.|+.| ++. +.| .++ ..+. ...
T Consensus 95 ~i~~Gev~gLvG~NGaGKSTLlkiL~G~----l~p~~G----~i~~~~~~~~~~~~~~G-~~l--------~~~~~~~~~ 157 (590)
T PRK13409 95 IPKEGKVTGILGPNGIGKTTAVKILSGE----LIPNLG----DYEEEPSWDEVLKRFRG-TEL--------QNYFKKLYN 157 (590)
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCC----ccCCCc----cccCCCcHHHHHHHhCC-hHH--------HHHHHHHhc
Confidence 4679999999999999999999999999 999999 665 222 111 0110 000
Q ss_pred -HhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCcee
Q psy16304 259 -KQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIIS 337 (537)
Q Consensus 259 -~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqr 337 (537)
...+++.+|.....+.... ..+.+.+... ....+....+..+|+.... ...+.+|||||+||
T Consensus 158 ~~~~~~~~~q~~~~~p~~~~-------------~tv~e~l~~~---~~~~~~~~~l~~l~l~~~~-~~~~~~LSgGe~qr 220 (590)
T PRK13409 158 GEIKVVHKPQYVDLIPKVFK-------------GKVRELLKKV---DERGKLDEVVERLGLENIL-DRDISELSGGELQR 220 (590)
T ss_pred cCcceeecccchhhhhhhhc-------------chHHHHHHhh---hHHHHHHHHHHHcCCchhh-cCChhhCCHHHHHH
Confidence 0112333443221111000 0011111110 0111222334456776543 45589999999999
Q ss_pred eecccccccceeccCCceEEEEEe--cCchhhHHH-----HHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcC
Q psy16304 338 LVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRT-----IWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSC 404 (537)
Q Consensus 338 vs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~-----l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~ 404 (537)
+ +++++++. + |++++|| |++++.... +++.+.+ +.+++++ +|++...+..+ ++++++
T Consensus 221 v----~ia~al~~-~--p~lllLDEPts~LD~~~~~~l~~~i~~l~~--g~tvIiv-sHd~~~l~~~~D~v~vl~~ 286 (590)
T PRK13409 221 V----AIAAALLR-D--ADFYFFDEPTSYLDIRQRLNVARLIRELAE--GKYVLVV-EHDLAVLDYLADNVHIAYG 286 (590)
T ss_pred H----HHHHHHhc-C--CCEEEEECCCCCCCHHHHHHHHHHHHHHHC--CCEEEEE-eCCHHHHHHhCCEEEEEeC
Confidence 9 99999996 4 8999999 999943322 2234333 5667777 89998887654 666654
No 360
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.56 E-value=1.4e-15 Score=144.22 Aligned_cols=150 Identities=15% Similarity=0.153 Sum_probs=91.7
Q ss_pred ccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhh
Q psy16304 183 VLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYL 262 (537)
Q Consensus 183 ~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i 262 (537)
+.+-.++++.+.+|++++|+|||||||||||+++.+ +.| ++.+.+.. ..+. +..+
T Consensus 8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~--------~~G----~v~~~~~~----------~~~~---~~~~ 62 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY--------ASG----KARLISFL----------PKFS---RNKL 62 (176)
T ss_pred eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh--------cCC----cEEECCcc----------cccc---cccE
Confidence 334566788899999999999999999999999853 467 55554310 0000 0112
Q ss_pred hccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccc
Q psy16304 263 GTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTV 342 (537)
Q Consensus 263 ~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti 342 (537)
.+++| .+ .+..+|+........+.+||+||++|+
T Consensus 63 ~~~~q-----------------------------~~-------------~l~~~~L~~~~~~~~~~~LSgGq~qrl---- 96 (176)
T cd03238 63 IFIDQ-----------------------------LQ-------------FLIDVGLGYLTLGQKLSTLSGGELQRV---- 96 (176)
T ss_pred EEEhH-----------------------------HH-------------HHHHcCCCccccCCCcCcCCHHHHHHH----
Confidence 23222 00 111233322112334778999999999
Q ss_pred ccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhhh-hhhhcCCc
Q psy16304 343 GFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ-VYLMSCNC 406 (537)
Q Consensus 343 ~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~~-i~ll~~G~ 406 (537)
+++++++..++ |+++++| |++++.. ...+..+.+ .+.+++++ +|+......++ ++++++|.
T Consensus 97 ~laral~~~~~-p~llLlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tvIiv-SH~~~~~~~~d~i~~l~~g~ 165 (176)
T cd03238 97 KLASELFSEPP-GTLFILDEPSTGLHQQDINQLLEVIKGLID-LGNTVILI-EHNLDVLSSADWIIDFGPGS 165 (176)
T ss_pred HHHHHHhhCCC-CCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEE-eCCHHHHHhCCEEEEECCCC
Confidence 99999998533 7999999 8888322 222333332 34556666 77776655444 66665544
No 361
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.54 E-value=2.1e-15 Score=138.50 Aligned_cols=206 Identities=15% Similarity=0.102 Sum_probs=126.6
Q ss_pred hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304 152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN 231 (537)
Q Consensus 152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t 231 (537)
.+.++++.|.|.-.. ..+.++....+++|.++.||+++|=||+|+|||||+++|-+. |.|++|
T Consensus 4 ~l~v~~~~KtFtlH~-----------q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaN----Y~~d~G-- 66 (235)
T COG4778 4 PLNVSNVSKTFTLHQ-----------QGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYAN----YLPDEG-- 66 (235)
T ss_pred eeeeecchhheEeee-----------cCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhc----cCCCCc--
Confidence 345677777543221 112235556678899999999999999999999999999999 999999
Q ss_pred eEEEEECCcEEEEEeecCCCc--hhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccC--cCCccc
Q psy16304 232 RARVEYGNKYEVFLYDLGGSE--DFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSAT--HLPLVD 307 (537)
Q Consensus 232 ~~~i~i~g~~~i~~~D~~G~~--~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~--~l~~~~ 307 (537)
+|.+...- ..+|....+ ..-.+.++.+|||+|.....+..... | -+.+-+-..+ .-....
T Consensus 67 --~I~v~H~g--~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aL-----d-------VvaePll~~gv~~~~a~~ 130 (235)
T COG4778 67 --QILVRHEG--EWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSAL-----D-------VVAEPLLARGVPREVARA 130 (235)
T ss_pred --eEEEEeCc--chhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchH-----H-------HHHhHHHHcCCCHHHHHH
Confidence 88775311 122333322 22345568899999986644432220 0 0111110000 000111
Q ss_pred cCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH--HHHHHHHH--hcCCE
Q psy16304 308 FRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIWKQYL--GTVSQ 381 (537)
Q Consensus 308 ~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l~~~~~--~~~~~ 381 (537)
++...+..+.++....+-.+.+||||++||+ .+++..+. + .++++|| |+.++.. ....+.+. +...+
T Consensus 131 ~a~~Ll~rLnlperLW~LaPaTFSGGEqQRV----NIaRgfiv-d--~pILLLDEPTasLDa~Nr~vVveli~e~Ka~Ga 203 (235)
T COG4778 131 KAADLLTRLNLPERLWSLAPATFSGGEQQRV----NIARGFIV-D--YPILLLDEPTASLDATNRAVVVELIREAKARGA 203 (235)
T ss_pred HHHHHHHHcCCCHHHhcCCCcccCCchheeh----hhhhhhhc-c--CceEEecCCcccccccchHHHHHHHHHHHhcCc
Confidence 2233444566665555555788999999999 99999997 6 7999999 8888332 22223222 22233
Q ss_pred EEEEEeCCCcchhhhhh
Q psy16304 382 TLLVSHSLSGRPDDRCQ 398 (537)
Q Consensus 382 vIlVvdshd~~~~~~~~ 398 (537)
+++=+ -||.+--+.++
T Consensus 204 AlvGI-FHDeevre~va 219 (235)
T COG4778 204 ALVGI-FHDEEVREAVA 219 (235)
T ss_pred eEEEe-eccHHHHHHHh
Confidence 44444 68877666554
No 362
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.54 E-value=3.6e-14 Score=148.84 Aligned_cols=217 Identities=22% Similarity=0.297 Sum_probs=149.3
Q ss_pred CeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECC---cEEEEEeecCCCchhh-HHHHhhhhccccCCCCC
Q psy16304 197 VPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGN---KYEVFLYDLGGSEDFR-TIWKQYLGTVSQTPLGR 272 (537)
Q Consensus 197 ~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g---~~~i~~~D~~G~~~~r-~~~~~~i~~v~Q~~~l~ 272 (537)
.+|+|||.+++|||||+|.|+|.+.+.+.-+.|+|++.+.-.+ +..+.++||+|..... ..+...+.. .....
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~---Qa~~A 80 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIRE---QALIA 80 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHH---HHHHH
Confidence 5799999999999999999999998999999999998765331 3789999999987432 111121211 11112
Q ss_pred CCccceeeEEeecCc-----cc-------------------cc----------------------------CCcccc---
Q psy16304 273 PDSRTCQVYLIMCGV-----HQ-------------------VS----------------------------GIPDEL--- 297 (537)
Q Consensus 273 ~~~~~~il~v~Ds~~-----~~-------------------~~----------------------------~l~~~l--- 297 (537)
..+++++++++|... +. .+ .+.+.+
T Consensus 81 i~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~e~~~~efyslG~g~~~~ISA~Hg~Gi~dLld~v 160 (444)
T COG1160 81 IEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKAEELAYEFYSLGFGEPVPISAEHGRGIGDLLDAV 160 (444)
T ss_pred HHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchhhhhHHHHHhcCCCCceEeehhhccCHHHHHHHH
Confidence 345899999999211 10 00 000001
Q ss_pred -ccc-CcCCcccc---CCccEEEeccCccCccchhhhhcCCCceeeecccccccceecc----CCceEEEEEecCchhhH
Q psy16304 298 -TSA-THLPLVDF---RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEY----GNKYEVFLYDLGGSEDF 368 (537)
Q Consensus 298 -~~~-~~l~~~~~---~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~----~e~p~lllLDT~Gl~~~ 368 (537)
..+ ...+.... ....+.++|.+++||+++++.|.|.++.-+++..|++++.+.. ++ -.+.++||+|++..
T Consensus 161 ~~~l~~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~-~~~~liDTAGiRrk 239 (444)
T COG1160 161 LELLPPDEEEEEEEETDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDG-RKYVLIDTAGIRRK 239 (444)
T ss_pred HhhcCCcccccccccCCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECC-eEEEEEECCCCCcc
Confidence 111 00001111 2356779999999999999999999999999999999988742 23 67889999999333
Q ss_pred HHHH-----------HHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEeccc-chh
Q psy16304 369 RTIW-----------KQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAK-NLS 417 (537)
Q Consensus 369 ~~l~-----------~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nk-dl~ 417 (537)
..+. ..-.+.++.+++|+|.++..+..+.. -.+.+.|+.+.+.-|| |+.
T Consensus 240 ~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~ 302 (444)
T COG1160 240 GKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLV 302 (444)
T ss_pred cccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEEccccC
Confidence 2221 12335678999999999988777766 5677889888888888 874
No 363
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.54 E-value=6.1e-16 Score=158.61 Aligned_cols=228 Identities=13% Similarity=0.092 Sum_probs=149.0
Q ss_pred HhhhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCc
Q psy16304 149 RGILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPT 227 (537)
Q Consensus 149 ~~~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt 227 (537)
.+.++.++|++..|+...- .+.+.+.++|.+.+||.++|||.+|||||-..+.+.+.-. .....-
T Consensus 3 ~~~lL~v~nLsV~f~~~~~--------------~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~ 68 (534)
T COG4172 3 TMPLLSIRNLSVAFHQEGG--------------TVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHP 68 (534)
T ss_pred CCcceeeeccEEEEecCCc--------------ceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCc
Confidence 3567778888886653321 1446677889999999999999999999999999998611 111223
Q ss_pred eeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCc--
Q psy16304 228 VGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPL-- 305 (537)
Q Consensus 228 ~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~-- 305 (537)
+| .+.++| .++--.+- ...+.+....|+++||++.-..+-...+ ..++.+.+.+..++..
T Consensus 69 sg----~i~f~G-~dll~~se---~~lr~iRG~~I~MIFQEPMtSLNPl~tI----------g~Qi~E~l~~Hrg~~~~~ 130 (534)
T COG4172 69 SG----SILFDG-EDLLAASE---RQLRGVRGNKIGMIFQEPMTSLNPLHTI----------GKQLAEVLRLHRGLSRAA 130 (534)
T ss_pred cc----eeEEcC-hhhhcCCH---HHHhhhcccceEEEecccccccCcHhHH----------HHHHHHHHHHHhcccHHH
Confidence 45 677766 33322111 2445566678999999987211100000 1112222322222221
Q ss_pred -cccCCccEEEeccCccC--ccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCch-----hhHHHHHHHH
Q psy16304 306 -VDFRSVPILVLGLDNAG--KSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGS-----EDFRTIWKQY 375 (537)
Q Consensus 306 -~~~~~~~L~llGl~~~g--Ks~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl-----~~~~~l~~~~ 375 (537)
..+.-..+..+|+++.. -.+++++|||||+||+ -+|.|++. + |+++|-| |..+ ..+..+++++
T Consensus 131 Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRV----MIAMALan--~-P~lLIADEPTTALDVtvQaQIL~Ll~~L 203 (534)
T COG4172 131 ARARALELLELVGIPEPEKRLDAYPHELSGGQRQRV----MIAMALAN--E-PDLLIADEPTTALDVTVQAQILDLLKEL 203 (534)
T ss_pred HHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHH----HHHHHHcC--C-CCeEeecCCcchhhhhhHHHHHHHHHHH
Confidence 12233445577876554 3567899999999999 88999885 4 8999999 7777 4445556666
Q ss_pred HhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccch
Q psy16304 376 LGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 376 ~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl 416 (537)
-++.+-.++.+ +||..-..... +.+|.+|+++..+..+.+
T Consensus 204 q~~~gMa~lfI-THDL~iVr~~ADrV~VM~~G~ivE~~~t~~l 245 (534)
T COG4172 204 QAELGMAILFI-THDLGIVRKFADRVYVMQHGEIVETGTTETL 245 (534)
T ss_pred HHHhCcEEEEE-eccHHHHHHhhhhEEEEeccEEeecCcHHHH
Confidence 66666666666 78887665543 999999999999988776
No 364
>KOG0061|consensus
Probab=99.53 E-value=5.4e-15 Score=165.11 Aligned_cols=195 Identities=15% Similarity=0.157 Sum_probs=132.9
Q ss_pred ccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhc
Q psy16304 185 LPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGT 264 (537)
Q Consensus 185 ~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~ 264 (537)
+-++++...++|+..|++||+|||||||+++|+|....+ ..+.| +|.++| . ...+..++...+|
T Consensus 45 iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~-~~~~G----~ilvNG-~----------~~~~~~~~~~s~y 108 (613)
T KOG0061|consen 45 ILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGG-LKLSG----EILLNG-R----------PRDSRSFRKISGY 108 (613)
T ss_pred eeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCC-CcceE----EEEECC-c----------cCchhhhhheeEE
Confidence 344566778899999999999999999999999981111 25788 888887 1 2334566688999
Q ss_pred cccCCCCCCCccceeeEEeecCcccccCCcccccccCcC---------CccccCCccEEEeccCccCccchh-----hhh
Q psy16304 265 VSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHL---------PLVDFRSVPILVLGLDNAGKSSII-----KRI 330 (537)
Q Consensus 265 v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l---------~~~~~~~~~L~llGl~~~gKs~li-----~~L 330 (537)
|.|+..+++.++. +|.+.....+ +...+.+..+..+|+....++. + +.+
T Consensus 109 V~QdD~l~~~LTV----------------~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~-ig~~~~rgi 171 (613)
T KOG0061|consen 109 VQQDDVLLPTLTV----------------RETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTL-IGNPGIRGL 171 (613)
T ss_pred EcccccccccccH----------------HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccce-ecCCCCCcc
Confidence 9999887776555 1111111111 1112334445566776555333 4 359
Q ss_pred cCCCceeeecccccccceeccCCceEEEEEe--cCchhhHHH-----HHHHHHhcCCEEEEEEeCCCcc--hhhhhh-hh
Q psy16304 331 LGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRT-----IWKQYLGTVSQTLLVSHSLSGR--PDDRCQ-VY 400 (537)
Q Consensus 331 SgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~-----l~~~~~~~~~~vIlVvdshd~~--~~~~~~-i~ 400 (537)
|||||+|+ .++..+++ + |.++++| |+|++.... .++++.+++.++|+. .|.+. -+...+ +.
T Consensus 172 SGGErkRv----sia~Ell~-~--P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~t--IHQPss~lf~lFD~l~ 242 (613)
T KOG0061|consen 172 SGGERKRV----SIALELLT-D--PSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICT--IHQPSSELFELFDKLL 242 (613)
T ss_pred ccchhhHH----HHHHHHHc-C--CCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEE--EeCCcHHHHHHHhHhh
Confidence 99999999 99999997 5 8999999 999965544 446666664444444 56554 333344 89
Q ss_pred hhcCCcEEEEecccchhhhhc
Q psy16304 401 LMSCNCQVYLISAKNLSNGFK 421 (537)
Q Consensus 401 ll~~G~ii~~g~nkdl~~~~~ 421 (537)
++..|+++..|.+++...-+.
T Consensus 243 lLs~G~~vy~G~~~~~~~ff~ 263 (613)
T KOG0061|consen 243 LLSEGEVVYSGSPRELLEFFS 263 (613)
T ss_pred hhcCCcEEEecCHHHHHHHHH
Confidence 999999999999987654443
No 365
>KOG0054|consensus
Probab=99.52 E-value=3.1e-15 Score=175.58 Aligned_cols=251 Identities=16% Similarity=0.188 Sum_probs=166.0
Q ss_pred hhHHHHHhhhcccccccccccccccCccccccccCCCCCC--chhHHHHHHHHHHHHhhhcccccCCCcccCCCCCCCCC
Q psy16304 95 EIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAP--TFEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDDPA 172 (537)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--p~~~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~~~~~ 172 (537)
-..|+..+...+..+.+..-+++|+..|+..+-.-.++.+ +-+- .+..+.+.+....+.+. ++.
T Consensus 469 Lr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~~~~~~----------~~~~i~i~~~sfsW~~~----~~~ 534 (1381)
T KOG0054|consen 469 LRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVERSPDEA----------GENAIEIKNGSFSWDSE----SPE 534 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCccccccCCCCC----------CCceEEEeeeeEecCCC----CCc
Confidence 3467777888888888999999999999886543332221 1001 12334444444433321 111
Q ss_pred cchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCc
Q psy16304 173 PTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSE 252 (537)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~ 252 (537)
+ .-.++++.+++|+.++++|+-||||||||..|.|+ ....+| .+.+.|
T Consensus 535 ~-----------tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGE----m~~~sG----~v~v~g------------- 582 (1381)
T KOG0054|consen 535 P-----------TLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGE----MPKLSG----SVAVNG------------- 582 (1381)
T ss_pred c-----------cccceeEEecCCCEEEEECCCCCCHHHHHHHHhcC----cccccc----eEEEcC-------------
Confidence 1 12355678889999999999999999999999999 999999 888877
Q ss_pred hhhHHHHhhhhccccCCCCCCC-ccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhc
Q psy16304 253 DFRTIWKQYLGTVSQTPLGRPD-SRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRIL 331 (537)
Q Consensus 253 ~~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LS 331 (537)
.++|++|.+.++.. ..+++++.-+-++++|+.+-+.-.....++.. ..--...+|..+.. ||
T Consensus 583 --------siaYv~Q~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~L--p~GD~TeIGErGin-------LS 645 (1381)
T KOG0054|consen 583 --------SVAYVPQQPWIQNGTVRENILFGSPYDEERYDKVIKACALKKDLEIL--PFGDLTEIGERGIN-------LS 645 (1381)
T ss_pred --------eEEEeccccHhhCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhc--CCCCcceecCCccC-------Cc
Confidence 17788898887766 66777776665555544332211111111110 01112256655544 99
Q ss_pred CCCceeeecccccccceeccCCceEEEEEe--cCchhhH--HHHHHHHHhc---CCEEEEEEeCCCcchhhhhh-hhhhc
Q psy16304 332 GEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIWKQYLGT---VSQTLLVSHSLSGRPDDRCQ-VYLMS 403 (537)
Q Consensus 332 gG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l~~~~~~~---~~~vIlVvdshd~~~~~~~~-i~ll~ 403 (537)
||||||+ ++|||+.. + .++-+|| .+.++.. +.+.++..+. .++.|+| +|....+..++ +++|+
T Consensus 646 GGQKqRI----sLARAVY~-~--adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILV--THql~~L~~ad~Iivl~ 716 (1381)
T KOG0054|consen 646 GGQKQRI----SLARAVYQ-D--ADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILV--THQLQFLPHADQIIVLK 716 (1381)
T ss_pred HhHHHHH----HHHHHHhc-c--CCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEE--eCchhhhhhCCEEEEec
Confidence 9999999 99999997 4 6899999 5555332 2233444432 2345555 56778888777 99999
Q ss_pred CCcEEEEecccchh
Q psy16304 404 CNCQVYLISAKNLS 417 (537)
Q Consensus 404 ~G~ii~~g~nkdl~ 417 (537)
+|++...|+.+++.
T Consensus 717 ~G~I~~~Gty~el~ 730 (1381)
T KOG0054|consen 717 DGKIVESGTYEELL 730 (1381)
T ss_pred CCeEecccCHHHHH
Confidence 99999999988875
No 366
>KOG0927|consensus
Probab=99.51 E-value=4.4e-15 Score=157.11 Aligned_cols=178 Identities=15% Similarity=0.131 Sum_probs=120.9
Q ss_pred cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304 188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ 267 (537)
Q Consensus 188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q 267 (537)
+++|.+..+.++++||||||||||||++++|. +.|+.| .+.-.....+..+.+ ..+. |
T Consensus 408 ~l~fgid~~srvAlVGPNG~GKsTLlKl~~gd----l~p~~G----~vs~~~H~~~~~y~Q------------h~~e--~ 465 (614)
T KOG0927|consen 408 KLNFGIDLDSRVALVGPNGAGKSTLLKLITGD----LQPTIG----MVSRHSHNKLPRYNQ------------HLAE--Q 465 (614)
T ss_pred hhhcccCcccceeEecCCCCchhhhHHHHhhc----cccccc----cccccccccchhhhh------------hhHh--h
Confidence 44567788999999999999999999999999 999999 554332122211111 0110 0
Q ss_pred CCCCCCCccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccccccc
Q psy16304 268 TPLGRPDSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNR 346 (537)
Q Consensus 268 ~~~l~~~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~ 346 (537)
.-+| +. +...+..+............+-.+|+.+...+..+.+||+|++.|| .+++
T Consensus 466 -------------ldl~~s~------le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rV----lFa~ 522 (614)
T KOG0927|consen 466 -------------LDLDKSS------LEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRV----LFAR 522 (614)
T ss_pred -------------cCcchhH------HHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhH----HHHH
Confidence 0000 00 0000111111001111223455788998888999999999999999 9999
Q ss_pred ceeccCCceEEEEEe--cCchh-hHHHHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEeccc
Q psy16304 347 ARVEYGNKYEVFLYD--LGGSE-DFRTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAK 414 (537)
Q Consensus 347 all~~~e~p~lllLD--T~Gl~-~~~~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nk 414 (537)
..+. . |.+++|| |+|++ .....+.+++++..|.++++ +||+.....+. +|+.+++.+....+..
T Consensus 523 l~~k-q--P~lLlLDEPtnhLDi~tid~laeaiNe~~Ggvv~v-SHDfrlI~qVaeEi~~c~~~~~~~~~G~i 591 (614)
T KOG0927|consen 523 LAVK-Q--PHLLLLDEPTNHLDIETIDALAEAINEFPGGVVLV-SHDFRLISQVAEEIWVCENGTVTKWDGDI 591 (614)
T ss_pred HHhc-C--CcEEEecCCCcCCCchhHHHHHHHHhccCCceeee-echhhHHHHHHHHhHhhccCceeecCccH
Confidence 9886 4 7999999 99994 44556677888888888888 89999888776 8999998887765544
No 367
>PLN03140 ABC transporter G family member; Provisional
Probab=99.51 E-value=4.9e-15 Score=178.83 Aligned_cols=189 Identities=14% Similarity=0.164 Sum_probs=118.8
Q ss_pred ccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCcccc--CceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhh
Q psy16304 185 LPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLV--PTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYL 262 (537)
Q Consensus 185 ~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~--Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i 262 (537)
+-.++++.+++|+.++|+||||||||||+++|+|. .. ++.| ++.++| ... . ....++.+
T Consensus 895 iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~----~~~g~~~G----~I~inG-~~~-----~-----~~~~~~~i 955 (1470)
T PLN03140 895 LLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGR----KTGGYIEG----DIRISG-FPK-----K-----QETFARIS 955 (1470)
T ss_pred EeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCC----CCCCcccc----eEEECC-ccC-----C-----hHHhhhhe
Confidence 44567888999999999999999999999999998 44 3678 777776 221 0 01223568
Q ss_pred hccccCCCCCCCccceeeEEeecCcccccCCccc--ccccCcCCc---cccCCccEEEeccCccCccch----hhhhcCC
Q psy16304 263 GTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDE--LTSATHLPL---VDFRSVPILVLGLDNAGKSSI----IKRILGE 333 (537)
Q Consensus 263 ~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~--l~~~~~l~~---~~~~~~~L~llGl~~~gKs~l----i~~LSgG 333 (537)
++++|+..+++..+.. +++... +..-..... ....+..+..+|+.+..++.. +..||||
T Consensus 956 gyv~Q~d~~~~~lTV~------------E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgG 1023 (1470)
T PLN03140 956 GYCEQNDIHSPQVTVR------------ESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTE 1023 (1470)
T ss_pred EEEccccccCCCCcHH------------HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHH
Confidence 9999997765543320 000000 000000000 011223344566654432221 3579999
Q ss_pred CceeeecccccccceeccCCceEEEEEe--cCchhhHH-----HHHHHHHhcCCEEEEEEeCCCcch--hhhhh-hhhhc
Q psy16304 334 PIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR-----TIWKQYLGTVSQTLLVSHSLSGRP--DDRCQ-VYLMS 403 (537)
Q Consensus 334 ~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~-----~l~~~~~~~~~~vIlVvdshd~~~--~~~~~-i~ll~ 403 (537)
|+||+ .++++++. + |++++|| |+|++... ..++++.+. +.+|+++ +|+... ++..+ +++++
T Consensus 1024 erkRv----sIa~aL~~-~--P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~-g~tVI~t-~Hq~~~~i~~~~D~vllL~ 1094 (1470)
T PLN03140 1024 QRKRL----TIAVELVA-N--PSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCT-IHQPSIDIFEAFDELLLMK 1094 (1470)
T ss_pred HHHHH----HHHHHHhh-C--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEE-eCCCCHHHHHhCCEEEEEc
Confidence 99999 99999997 5 8999999 99994332 233444333 3456666 788763 33344 78888
Q ss_pred C-CcEEEEecc
Q psy16304 404 C-NCQVYLISA 413 (537)
Q Consensus 404 ~-G~ii~~g~n 413 (537)
+ |+++..|..
T Consensus 1095 ~gG~~v~~G~~ 1105 (1470)
T PLN03140 1095 RGGQVIYSGPL 1105 (1470)
T ss_pred CCCEEEEECCc
Confidence 5 898887765
No 368
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.51 E-value=8.5e-15 Score=149.76 Aligned_cols=182 Identities=15% Similarity=0.090 Sum_probs=115.4
Q ss_pred ccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccC
Q psy16304 189 LSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQT 268 (537)
Q Consensus 189 ~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~ 268 (537)
+++++++||.|-|+|.||||||||++.|+|. +.|++| +|.++| ..+|-...+++| ..++-||.+
T Consensus 342 iNl~ikrGelvFliG~NGsGKST~~~LLtGL----~~PqsG----~I~ldg----~pV~~e~ledYR----~LfSavFsD 405 (546)
T COG4615 342 INLTIKRGELVFLIGGNGSGKSTLAMLLTGL----YQPQSG----EILLDG----KPVSAEQLEDYR----KLFSAVFSD 405 (546)
T ss_pred eeeEEecCcEEEEECCCCCcHHHHHHHHhcc----cCCCCC----ceeECC----ccCCCCCHHHHH----HHHHHHhhh
Confidence 3567889999999999999999999999999 999999 999998 344444445666 666677777
Q ss_pred CCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccce
Q psy16304 269 PLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRAR 348 (537)
Q Consensus 269 ~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~al 348 (537)
..+|...... +.....+..-.|+..++... +..+-| .+. + .-.||.||+.|+ ++-.++
T Consensus 406 yhLF~~ll~~---------e~~as~q~i~~~LqrLel~~----ktsl~d-~~f---s-~~kLStGQkKRl----All~Al 463 (546)
T COG4615 406 YHLFDQLLGP---------EGKASPQLIEKWLQRLELAH----KTSLND-GRF---S-NLKLSTGQKKRL----ALLLAL 463 (546)
T ss_pred HhhhHhhhCC---------ccCCChHHHHHHHHHHHHhh----hhcccC-Ccc---c-ccccccchHHHH----HHHHHH
Confidence 7766443321 00000011011221111111 011111 111 1 346999999999 888888
Q ss_pred eccCCceEEEEEe--cCchh-hHHHHH-H---HHHhcCCEEEEEEeCCCcchhhhhh-hhhhcCCcEEEEec
Q psy16304 349 VEYGNKYEVFLYD--LGGSE-DFRTIW-K---QYLGTVSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLIS 412 (537)
Q Consensus 349 l~~~e~p~lllLD--T~Gl~-~~~~l~-~---~~~~~~~~vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g~ 412 (537)
+. + -+++.+| .+-++ .++... . -.+++.+.+|+++ +||..-+.+.+ ...+++|++....+
T Consensus 464 lE-e--R~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aI-sHDd~YF~~ADrll~~~~G~~~e~tg 531 (546)
T COG4615 464 LE-E--RDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAI-SHDDHYFIHADRLLEMRNGQLSELTG 531 (546)
T ss_pred Hh-h--CCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEE-ecCchhhhhHHHHHHHhcCceeeccc
Confidence 85 3 5899999 55552 222211 2 2234445577778 78888888777 77889999876544
No 369
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.51 E-value=4.4e-13 Score=146.08 Aligned_cols=209 Identities=20% Similarity=0.258 Sum_probs=134.1
Q ss_pred CCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEE----ECCcEEEEEeecCCCchh--------hHHHHhhhh
Q psy16304 196 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVE----YGNKYEVFLYDLGGSEDF--------RTIWKQYLG 263 (537)
Q Consensus 196 G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~----i~g~~~i~~~D~~G~~~~--------r~~~~~~i~ 263 (537)
-.+|+|||++|||||||++.|+|...+...++.|+|++.+. +++ ..+.+||++|+... ...+...+.
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~-~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 116 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG-RRFTVVDTGGWEPDAKGLQASVAEQAEVAMR 116 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC-cEEEEEeCCCcCCcchhHHHHHHHHHHHHHH
Confidence 35799999999999999999999876666778887765544 344 78999999997621 111222222
Q ss_pred ccccCCCCCCCccceeeEEee-cCccc---------------------------------------------------cc
Q psy16304 264 TVSQTPLGRPDSRTCQVYLIM-CGVHQ---------------------------------------------------VS 291 (537)
Q Consensus 264 ~v~Q~~~l~~~~~~~il~v~D-s~~~~---------------------------------------------------~~ 291 (537)
. ++++++|+| ++... ..
T Consensus 117 ~-----------aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~~~~~~~~~~~g~~~~~~iSA~~g~ 185 (472)
T PRK03003 117 T-----------ADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERGEADAAALWSLGLGEPHPVSALHGR 185 (472)
T ss_pred h-----------CCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCccchhhHHHHhcCCCCeEEEEcCCCC
Confidence 2 677777777 22100 00
Q ss_pred CCccccccc-CcCCc---c---ccCCccEEEeccCccCccchhhhhcCCCceeeecccccccce----eccCCceEEEEE
Q psy16304 292 GIPDELTSA-THLPL---V---DFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRAR----VEYGNKYEVFLY 360 (537)
Q Consensus 292 ~l~~~l~~~-~~l~~---~---~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~al----l~~~e~p~lllL 360 (537)
++.+.+.++ ..+.. . ......+.++|.+++||+++++.|.++++..+++..++++.. +..++ .++.+|
T Consensus 186 gi~eL~~~i~~~l~~~~~~~~~~~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~-~~~~l~ 264 (472)
T PRK03003 186 GVGDLLDAVLAALPEVPRVGSASGGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGG-KTWRFV 264 (472)
T ss_pred CcHHHHHHHHhhcccccccccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECC-EEEEEE
Confidence 000000000 00000 0 011245779999999999999999998876666665655533 33344 678899
Q ss_pred ecCchh----------hHHHHH-HHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEeccc-chh
Q psy16304 361 DLGGSE----------DFRTIW-KQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAK-NLS 417 (537)
Q Consensus 361 DT~Gl~----------~~~~l~-~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nk-dl~ 417 (537)
||+|+. .+..+. ..+++.++++++|+|.++..+..... ..+.+.|.++....|| |+.
T Consensus 265 DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~ 335 (472)
T PRK03003 265 DTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDLV 335 (472)
T ss_pred ECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 999962 222222 23567889999999998877666555 3344578888888888 773
No 370
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.50 E-value=5.8e-15 Score=179.66 Aligned_cols=184 Identities=16% Similarity=0.208 Sum_probs=115.9
Q ss_pred ccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhc
Q psy16304 185 LPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGT 264 (537)
Q Consensus 185 ~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~ 264 (537)
+-.++++.+++|+.++|+||||||||||+++|.|. +.|+.| +|.++| .++|
T Consensus 441 ~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~----~~~~~G----~i~~~g---------------------~iay 491 (1490)
T TIGR01271 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGE----LEPSEG----KIKHSG---------------------RISF 491 (1490)
T ss_pred ceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCc----eEEECC---------------------EEEE
Confidence 34567888999999999999999999999999999 999999 777765 1677
Q ss_pred cccCCCCCCC-ccceeeEEeecCcccccCCcccccccCcCCccccCCccEEE--eccC-ccCccchhhhhcCCCceeeec
Q psy16304 265 VSQTPLGRPD-SRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILV--LGLD-NAGKSSIIKRILGEPIISLVP 340 (537)
Q Consensus 265 v~Q~~~l~~~-~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~l--lGl~-~~gKs~li~~LSgG~rqrvs~ 340 (537)
++|++.++.. ..+++.+...-+.+++..+ +... .+ ...+.. .|.. ..+ . ....|||||+||+
T Consensus 492 v~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~---~~~~-~L------~~~l~~l~~g~~t~vg-~-~g~~LSgGqkqRi-- 557 (1490)
T TIGR01271 492 SPQTSWIMPGTIKDNIIFGLSYDEYRYTSV---IKAC-QL------EEDIALFPEKDKTVLG-E-GGITLSGGQRARI-- 557 (1490)
T ss_pred EeCCCccCCccHHHHHHhccccchHHHHHH---HHHH-hH------HHHHHhcccccccccc-C-cCCCcCHHHHHHH--
Confidence 7777765542 1122221111000000000 0000 00 000001 1110 011 1 1456999999999
Q ss_pred ccccccceeccCCceEEEEEe--cCchhhH--HHHHHHHHh--cCCEEEEEEeCCCcchhhhhh-hhhhcCCcEEEEecc
Q psy16304 341 TVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIWKQYLG--TVSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLISA 413 (537)
Q Consensus 341 ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l~~~~~~--~~~~vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g~n 413 (537)
++|++++. + |++++|| +++++.. ..+++.++. ..+.+++++ +|+......++ ++++++|+++..|+.
T Consensus 558 --~lARAl~~-~--~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilv-tH~~~~~~~ad~ii~l~~g~i~~~g~~ 631 (1490)
T TIGR01271 558 --SLARAVYK-D--ADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILV-TSKLEHLKKADKILLLHEGVCYFYGTF 631 (1490)
T ss_pred --HHHHHHHc-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEE-eCChHHHHhCCEEEEEECCEEEEEcCH
Confidence 99999996 5 8999999 9998433 233333221 123455666 67777766655 899999999998887
Q ss_pred cchh
Q psy16304 414 KNLS 417 (537)
Q Consensus 414 kdl~ 417 (537)
.++.
T Consensus 632 ~~l~ 635 (1490)
T TIGR01271 632 SELQ 635 (1490)
T ss_pred HHHH
Confidence 7764
No 371
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.50 E-value=4.3e-14 Score=130.49 Aligned_cols=188 Identities=12% Similarity=0.083 Sum_probs=111.2
Q ss_pred ccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccC
Q psy16304 189 LSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQT 268 (537)
Q Consensus 189 ~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~ 268 (537)
+|..+..|+.+-+|||||||||||+..++|. .|-+| +|.++| ..+.-|...... +.-.|+.|.
T Consensus 18 lS~qv~aGe~~HliGPNGaGKSTLLA~lAGm-----~~~sG----si~~~G-~~l~~~~~~eLA-------rhRAYLsQq 80 (248)
T COG4138 18 LSGEVRAGEILHLVGPNGAGKSTLLARMAGM-----TSGSG----SIQFAG-QPLEAWSATELA-------RHRAYLSQQ 80 (248)
T ss_pred cccccccceEEEEECCCCccHHHHHHHHhCC-----CCCCc----eEEECC-cchhHHhHhHHH-------HHHHHHhhc
Confidence 3456778999999999999999999999996 78899 899887 666555552222 334555554
Q ss_pred CCCCCCccceeeEEeecCcccccCCcccccccCcCCc-cccCCccEEEeccCccCccchhhhhcCCCceeeecccccccc
Q psy16304 269 PLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPL-VDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA 347 (537)
Q Consensus 269 ~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~-~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~a 347 (537)
..... .+-| ...+....--.. ..........+++++.. .+.+++||||+-||| -+|..
T Consensus 81 q~p~f-----~mpV-----------~~YL~L~qP~~~~a~~i~~i~~~L~l~DKL-~Rs~~qLSGGEWQRV----RLAav 139 (248)
T COG4138 81 QTPPF-----AMPV-----------WHYLTLHQPDKTRTELLNDVAGALALDDKL-GRSTNQLSGGEWQRV----RLAAV 139 (248)
T ss_pred cCCcc-----hhhh-----------hhhhhhcCchHHHHHHHHHHHhhhcccchh-hhhhhhcCcccceee----EEeEE
Confidence 33110 0001 111100000000 00001112245555544 333899999998888 55555
Q ss_pred eeccC-C---ceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcc-hhhhhh-hhhhcCCcEEEEeccc
Q psy16304 348 RVEYG-N---KYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGR-PDDRCQ-VYLMSCNCQVYLISAK 414 (537)
Q Consensus 348 ll~~~-e---~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~-~~~~~~-i~ll~~G~ii~~g~nk 414 (537)
.+... + +-++++|| .++++-. ..++..+... ..+|++. +||.. +....+ +|++..|+++..|..+
T Consensus 140 ~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~-G~~vims-~HDLNhTLrhA~~~wLL~rG~l~~~G~~~ 217 (248)
T COG4138 140 VLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQ-GLAIVMS-SHDLNHTLRHAHRAWLLKRGKLLASGRRE 217 (248)
T ss_pred EEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhC-CcEEEEe-ccchhhHHHHHHHHHHHhcCeEEeecchh
Confidence 44322 1 25889999 7777322 2233444433 2344444 88875 444555 9999999999998877
Q ss_pred ch
Q psy16304 415 NL 416 (537)
Q Consensus 415 dl 416 (537)
+.
T Consensus 218 eV 219 (248)
T COG4138 218 EV 219 (248)
T ss_pred hh
Confidence 65
No 372
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.50 E-value=4.7e-16 Score=140.42 Aligned_cols=128 Identities=20% Similarity=0.214 Sum_probs=84.6
Q ss_pred cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304 188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ 267 (537)
Q Consensus 188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q 267 (537)
++++.+.+|++++|+|+||+|||||+++|+|. ..|+.| .+.+++ ..+.. ......+..+++++|
T Consensus 3 ~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~----~~~~~G----~i~~~~-~~~~~-------~~~~~~~~~i~~~~~ 66 (137)
T PF00005_consen 3 NVSLEIKPGEIVAIVGPNGSGKSTLLKALAGL----LPPDSG----SILING-KDISD-------IDIEELRRRIGYVPQ 66 (137)
T ss_dssp EEEEEEETTSEEEEEESTTSSHHHHHHHHTTS----SHESEE----EEEETT-EEGTT-------SHHHHHHHTEEEEES
T ss_pred ceEEEEcCCCEEEEEccCCCccccceeeeccc----cccccc----cccccc-ccccc-------ccccccccccccccc
Confidence 35667789999999999999999999999999 999999 888886 33321 112344578999999
Q ss_pred CCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCcc---chhhhhcCCCceeeeccccc
Q psy16304 268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKS---SIIKRILGEPIISLVPTVGF 344 (537)
Q Consensus 268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs---~li~~LSgG~rqrvs~ti~l 344 (537)
+..++...+. .+. ....+....+..+++...... .....||+||++|+ ++
T Consensus 67 ~~~~~~~~tv----------------~~~-------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl----~l 119 (137)
T PF00005_consen 67 DPQLFPGLTV----------------REN-------ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRL----AL 119 (137)
T ss_dssp SHCHHTTSBH----------------HHH-------HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHH----HH
T ss_pred cccccccccc----------------ccc-------cccccccccccccccccccccccccccchhhHHHHHHH----HH
Confidence 8664433221 000 000001111112222221111 11388999999999 99
Q ss_pred ccceeccCCceEEEEEe
Q psy16304 345 NRARVEYGNKYEVFLYD 361 (537)
Q Consensus 345 a~all~~~e~p~lllLD 361 (537)
+++++. + |++++||
T Consensus 120 a~al~~-~--~~llllD 133 (137)
T PF00005_consen 120 ARALLK-N--PKLLLLD 133 (137)
T ss_dssp HHHHHT-T--SSEEEEE
T ss_pred HHHHHc-C--CCEEEEe
Confidence 999986 4 8999999
No 373
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.46 E-value=1.2e-14 Score=143.35 Aligned_cols=92 Identities=13% Similarity=0.004 Sum_probs=60.8
Q ss_pred EEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhh-----HHHHHHHHHhcCCEEEEE
Q psy16304 313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSED-----FRTIWKQYLGTVSQTLLV 385 (537)
Q Consensus 313 L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~-----~~~l~~~~~~~~~~vIlV 385 (537)
+..+|+........+.+|||||+||+ +++++++..++ |+++++| |+|++. +...+..+.+. +.++++
T Consensus 121 l~~~~l~~~~~~~~~~~LSgG~~qrv----~laral~~~p~-~~llllDEPt~gLD~~~~~~l~~~l~~~~~~-g~tii~ 194 (226)
T cd03270 121 LVDVGLGYLTLSRSAPTLSGGEAQRI----RLATQIGSGLT-GVLYVLDEPSIGLHPRDNDRLIETLKRLRDL-GNTVLV 194 (226)
T ss_pred HHHCCCCcccccCccCcCCHHHHHHH----HHHHHHHhCCC-CCEEEEeCCccCCCHHHHHHHHHHHHHHHhC-CCEEEE
Confidence 33556654222445889999999999 99999996221 3699999 888832 22233343333 445666
Q ss_pred EeCCCcchhhhhh-hhhh------cCCcEEEEe
Q psy16304 386 SHSLSGRPDDRCQ-VYLM------SCNCQVYLI 411 (537)
Q Consensus 386 vdshd~~~~~~~~-i~ll------~~G~ii~~g 411 (537)
+ +|+.+....++ ++++ ++|+++..|
T Consensus 195 i-tH~~~~~~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 195 V-EHDEDTIRAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred E-EeCHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence 6 78877665444 8888 788887653
No 374
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.44 E-value=1.6e-12 Score=139.90 Aligned_cols=207 Identities=22% Similarity=0.328 Sum_probs=129.1
Q ss_pred eEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeE----EEEECCcEEEEEeecCCCchh--------hHHHHhhhhcc
Q psy16304 198 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA----RVEYGNKYEVFLYDLGGSEDF--------RTIWKQYLGTV 265 (537)
Q Consensus 198 ~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~----~i~i~g~~~i~~~D~~G~~~~--------r~~~~~~i~~v 265 (537)
+|+|||++|+|||||++.|+|.+.+...+..|+|++ .+.+++ ..+.+||++|.... .......+.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~-~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~-- 77 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG-REFILIDTGGIEEDDDGLDKQIREQAEIAIE-- 77 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC-eEEEEEECCCCCCcchhHHHHHHHHHHHHHh--
Confidence 489999999999999999999866556667776654 344554 88999999997422 111111222
Q ss_pred ccCCCCCCCccceeeEEee-cCccc-----------------------cc-----C-----------------------C
Q psy16304 266 SQTPLGRPDSRTCQVYLIM-CGVHQ-----------------------VS-----G-----------------------I 293 (537)
Q Consensus 266 ~Q~~~l~~~~~~~il~v~D-s~~~~-----------------------~~-----~-----------------------l 293 (537)
.++.+++++| .+... .+ . +
T Consensus 78 ---------~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~~~~~~~~~lg~~~~~~vSa~~g~gv 148 (429)
T TIGR03594 78 ---------EADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKEDAVAAEFYSLGFGEPIPISAEHGRGI 148 (429)
T ss_pred ---------hCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCcccccHHHHHhcCCCCeEEEeCCcCCCh
Confidence 2667777777 21100 00 0 0
Q ss_pred ccccccc-CcCCcc------ccCCccEEEeccCccCccchhhhhcCCCceeeecccccccce----eccCCceEEEEEec
Q psy16304 294 PDELTSA-THLPLV------DFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRAR----VEYGNKYEVFLYDL 362 (537)
Q Consensus 294 ~~~l~~~-~~l~~~------~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~al----l~~~e~p~lllLDT 362 (537)
.+.++.+ ..+... ......+.++|.+++||+++++.|.+..+..+.+..++++.. +..++ ..+.+|||
T Consensus 149 ~~ll~~i~~~l~~~~~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~~liDT 227 (429)
T TIGR03594 149 GDLLDAILELLPEEEEEEEEEDGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNG-KKYLLIDT 227 (429)
T ss_pred HHHHHHHHHhcCcccccccccCCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECC-cEEEEEEC
Confidence 0000000 000000 011235779999999999999999998876666555554432 22244 68899999
Q ss_pred CchhhHHHH----------H-HHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEeccc-chh
Q psy16304 363 GGSEDFRTI----------W-KQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAK-NLS 417 (537)
Q Consensus 363 ~Gl~~~~~l----------~-~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nk-dl~ 417 (537)
+|+...... . ..+++.++++++|+|..+..+..... ..+.+.|..+....|| |+.
T Consensus 228 ~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 228 AGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLV 296 (429)
T ss_pred CCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccC
Confidence 997322111 1 24567889999999988876665544 3344567888888888 774
No 375
>PTZ00243 ABC transporter; Provisional
Probab=99.44 E-value=1.7e-14 Score=175.91 Aligned_cols=185 Identities=16% Similarity=0.175 Sum_probs=116.6
Q ss_pred ccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhc
Q psy16304 185 LPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGT 264 (537)
Q Consensus 185 ~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~ 264 (537)
+-.++++.+.+|++++|+|+||||||||+++|.|. +.|+.| ++.+. ..+++
T Consensus 675 iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~----~~~~~G----~i~~~---------------------~~i~y 725 (1560)
T PTZ00243 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQ----FEISEG----RVWAE---------------------RSIAY 725 (1560)
T ss_pred eEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcC----CCCCCc----EEEEC---------------------CeEEE
Confidence 34467888999999999999999999999999999 999999 55432 24788
Q ss_pred cccCCCCCCC-ccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEe--ccCccCccchhhhhcCCCceeeecc
Q psy16304 265 VSQTPLGRPD-SRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVL--GLDNAGKSSIIKRILGEPIISLVPT 341 (537)
Q Consensus 265 v~Q~~~l~~~-~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~ll--Gl~~~gKs~li~~LSgG~rqrvs~t 341 (537)
++|++.++.. ..+.+.+....+.+++..+ +.. ......+..+ |+...- ......|||||+||+
T Consensus 726 v~Q~~~l~~~Tv~enI~~~~~~~~~~~~~~---~~~-------~~l~~~l~~l~~g~~t~i-~~~g~~LSGGQkqRv--- 791 (1560)
T PTZ00243 726 VPQQAWIMNATVRGNILFFDEEDAARLADA---VRV-------SQLEADLAQLGGGLETEI-GEKGVNLSGGQKARV--- 791 (1560)
T ss_pred EeCCCccCCCcHHHHHHcCChhhHHHHHHH---HHH-------hhhHHHHHHhhccchHHh-cCCCCCCCHHHHHHH---
Confidence 8888775432 1111111000000000000 000 0000001111 222111 122567999999999
Q ss_pred cccccceeccCCceEEEEEe--cCchhhH--HHHHHHHH--hcCCEEEEEEeCCCcchhhhhh-hhhhcCCcEEEEeccc
Q psy16304 342 VGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIWKQYL--GTVSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLISAK 414 (537)
Q Consensus 342 i~la~all~~~e~p~lllLD--T~Gl~~~--~~l~~~~~--~~~~~vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g~nk 414 (537)
++|++++. + |++++|| |++++.. ..+++.++ ...+.+++++ +|+......++ ++++++|++...|+..
T Consensus 792 -aLARAl~~-~--p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlv-TH~~~~~~~ad~ii~l~~G~i~~~G~~~ 866 (1560)
T PTZ00243 792 -SLARAVYA-N--RDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLA-THQVHVVPRADYVVALGDGRVEFSGSSA 866 (1560)
T ss_pred -HHHHHHhc-C--CCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEE-eCCHHHHHhCCEEEEEECCEEEEecCHH
Confidence 99999996 5 8999999 9999643 33333322 1123456666 78887776655 8999999999888877
Q ss_pred chh
Q psy16304 415 NLS 417 (537)
Q Consensus 415 dl~ 417 (537)
++.
T Consensus 867 ~l~ 869 (1560)
T PTZ00243 867 DFM 869 (1560)
T ss_pred HHH
Confidence 764
No 376
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=8.1e-14 Score=130.33 Aligned_cols=164 Identities=13% Similarity=0.172 Sum_probs=97.8
Q ss_pred ccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCch-hhHHHHhhhhcccc
Q psy16304 189 LSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSED-FRTIWKQYLGTVSQ 267 (537)
Q Consensus 189 ~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~-~r~~~~~~i~~v~Q 267 (537)
++|+..+|+.+.|.||||+|||||+++|+|. ..|++| +|.+.+ ..+.. ..+ ++ ..-.|+|.
T Consensus 21 L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGL----l~p~~G----~v~~~~-~~i~~-----~~~~~~-~~l~yLGH--- 82 (209)
T COG4133 21 LSFTLNAGEALQITGPNGAGKTTLLRILAGL----LRPDAG----EVYWQG-EPIQN-----VRESYH-QALLYLGH--- 82 (209)
T ss_pred eeEEEcCCCEEEEECCCCCcHHHHHHHHHcc----cCCCCC----eEEecC-CCCcc-----chhhHH-HHHHHhhc---
Confidence 5677889999999999999999999999999 999999 888875 21111 111 11 11123343
Q ss_pred CCCCCCCccceeeEEeecCcccccCCcccccccCcCCc---cccCCccEEEeccCccCccchhhhhcCCCceeeeccccc
Q psy16304 268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPL---VDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF 344 (537)
Q Consensus 268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~---~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~l 344 (537)
.+.+=.+++ +.+.+.+...+.. .......+..+|+.+.. +..+.+||-||++|+ ++
T Consensus 83 ~~giK~eLT----------------a~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~-dlp~~~LSAGQqRRv----Al 141 (209)
T COG4133 83 QPGIKTELT----------------ALENLHFWQRFHGSGNAATIWEALAQVGLAGLE-DLPVGQLSAGQQRRV----AL 141 (209)
T ss_pred cccccchhh----------------HHHHHHHHHHHhCCCchhhHHHHHHHcCccccc-ccchhhcchhHHHHH----HH
Confidence 111000000 1222222222111 11222345577887776 445899999999999 99
Q ss_pred ccceeccCCceEEEEEe--cCchhhH-HHHHHHHHh---cCCEEEEEEeCCCcchhh
Q psy16304 345 NRARVEYGNKYEVFLYD--LGGSEDF-RTIWKQYLG---TVSQTLLVSHSLSGRPDD 395 (537)
Q Consensus 345 a~all~~~e~p~lllLD--T~Gl~~~-~~l~~~~~~---~~~~vIlVvdshd~~~~~ 395 (537)
|+-.+. . .++-+|| +++++.. ...+..++. ...+.|+.+ +|......
T Consensus 142 ArL~ls-~--~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllt-tHq~l~~~ 194 (209)
T COG4133 142 ARLWLS-P--APLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLT-THQPLPIA 194 (209)
T ss_pred HHHHcC-C--CCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEe-cCCccCCC
Confidence 988886 4 5888999 7777332 222333222 223455555 77765543
No 377
>KOG0066|consensus
Probab=99.41 E-value=1e-13 Score=142.97 Aligned_cols=172 Identities=16% Similarity=0.261 Sum_probs=106.3
Q ss_pred cccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCC
Q psy16304 190 SLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTP 269 (537)
Q Consensus 190 ~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~ 269 (537)
.|-+.-..+|+||||||+||||||++|.|. +.|+.| +..-+....+..+|+...+.++ +
T Consensus 607 dFGiDmdSRiaIVGPNGVGKSTlLkLL~Gk----l~P~~G----E~RKnhrL~iG~FdQh~~E~L~-------~------ 665 (807)
T KOG0066|consen 607 DFGIDMDSRIAIVGPNGVGKSTLLKLLIGK----LDPNDG----ELRKNHRLRIGWFDQHANEALN-------G------ 665 (807)
T ss_pred cccccccceeEEECCCCccHHHHHHHHhcC----CCCCcc----hhhccceeeeechhhhhHHhhc-------c------
Confidence 344556688999999999999999999999 999999 6655544555555552221111 0
Q ss_pred CCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccccccccee
Q psy16304 270 LGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARV 349 (537)
Q Consensus 270 ~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all 349 (537)
+.+. .+.+...-++.. ..+...+-.+|+.....+-.+..||||++.|| +++...+
T Consensus 666 ----Eetp----------------~EyLqr~FNlpy-q~ARK~LG~fGL~sHAHTikikdLSGGQKaRV----alaeLal 720 (807)
T KOG0066|consen 666 ----EETP----------------VEYLQRKFNLPY-QEARKQLGTFGLASHAHTIKIKDLSGGQKARV----ALAELAL 720 (807)
T ss_pred ----ccCH----------------HHHHHHhcCCCh-HHHHHHhhhhhhhhccceEeeeecCCcchHHH----HHHHHhc
Confidence 0000 011111111211 12233345677777777777889999999999 6655444
Q ss_pred ccCCceEEEEEe--cCch--hhHHHHHHHHHhcCCEEEEEEeCCCcchhh--hhhhhhhcCCcEEEEec
Q psy16304 350 EYGNKYEVFLYD--LGGS--EDFRTIWKQYLGTVSQTLLVSHSLSGRPDD--RCQVYLMSCNCQVYLIS 412 (537)
Q Consensus 350 ~~~e~p~lllLD--T~Gl--~~~~~l~~~~~~~~~~vIlVvdshd~~~~~--~~~i~ll~~G~ii~~g~ 412 (537)
.+ |+++||| |+.+ +.+..+-+.+ +.+.+.++++ +||..... .|..|++++..|-.+.+
T Consensus 721 --~~-PDvlILDEPTNNLDIESIDALaEAI-ney~GgVi~V-sHDeRLi~eT~C~LwVvE~Q~i~eIdG 784 (807)
T KOG0066|consen 721 --GG-PDVLILDEPTNNLDIESIDALAEAI-NEYNGGVIMV-SHDERLIVETDCNLWVVENQGIDEIDG 784 (807)
T ss_pred --CC-CCEEEecCCCCCcchhhHHHHHHHH-HhccCcEEEE-ecccceeeecCceEEEEccCChhhccc
Confidence 55 9999999 8888 4444444444 4555655566 56644333 34488888765544443
No 378
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.39 E-value=1.7e-13 Score=123.73 Aligned_cols=135 Identities=16% Similarity=0.187 Sum_probs=93.8
Q ss_pred cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccC---ceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhc
Q psy16304 188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVP---TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGT 264 (537)
Q Consensus 188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~P---t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~ 264 (537)
++++++.+|+++-|+||+|+|||||+.-+.|. ..+ -.| ++.+++ .++..+.. .++.+|.
T Consensus 20 ~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~----La~~F~~~G----~~~l~~-~~l~~lPa---------~qRq~Gi 81 (213)
T COG4136 20 NVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGA----LAGQFSCTG----ELWLNE-QRLDMLPA---------AQRQIGI 81 (213)
T ss_pred eeeEEecCCcEEEEECCCCccHHHHHHHHHhh----cccCcceee----EEEECC-eeccccch---------hhhheee
Confidence 45688899999999999999999999999997 543 456 777775 44433222 2377999
Q ss_pred cccCCCCCCCccceeeEEee--cCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccc
Q psy16304 265 VSQTPLGRPDSRTCQVYLIM--CGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTV 342 (537)
Q Consensus 265 v~Q~~~l~~~~~~~il~v~D--s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti 342 (537)
+||++.+|+....+--+++. .+.. ++ .....+...+...|+.+.- .+.+.+|||||+.|+
T Consensus 82 LFQD~lLFphlsVg~Nl~fAlp~~~K------------G~-aRr~~a~aAL~~~gL~g~f-~~dP~tlSGGQrARv---- 143 (213)
T COG4136 82 LFQDALLFPHLSVGQNLLFALPATLK------------GN-ARRNAANAALERSGLDGAF-HQDPATLSGGQRARV---- 143 (213)
T ss_pred eecccccccccccccceEEecCcccc------------cH-HHHhhHHHHHHHhccchhh-hcChhhcCcchHHHH----
Confidence 99999999987664333332 1110 00 0001112334456777665 344999999999999
Q ss_pred ccccceeccCCceEEEEEe
Q psy16304 343 GFNRARVEYGNKYEVFLYD 361 (537)
Q Consensus 343 ~la~all~~~e~p~lllLD 361 (537)
++.++++. . |++++||
T Consensus 144 aL~R~Lla-~--Pk~lLLD 159 (213)
T COG4136 144 ALLRALLA-Q--PKALLLD 159 (213)
T ss_pred HHHHHHHh-C--cceeeeC
Confidence 99999885 3 8999999
No 379
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.39 E-value=1.1e-11 Score=133.64 Aligned_cols=208 Identities=23% Similarity=0.328 Sum_probs=131.1
Q ss_pred CeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeee----EEEEECCcEEEEEeecCCCch----h----hHHHHhhhhc
Q psy16304 197 VPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNR----ARVEYGNKYEVFLYDLGGSED----F----RTIWKQYLGT 264 (537)
Q Consensus 197 ~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~----~~i~i~g~~~i~~~D~~G~~~----~----r~~~~~~i~~ 264 (537)
.+|+|+|.+|+|||||++.|.|.+.+......|+|+ ..+.++| ..+.+||++|+.. + +......+..
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~-~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ 80 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG-REFILIDTGGIEPDDDGFEKQIREQAELAIEE 80 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC-cEEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence 369999999999999999999986554555556443 3456665 8999999999875 1 1111122222
Q ss_pred cccCCCCCCCccceeeEEee-cCccc-----------------------cc--C----Ccc-------------------
Q psy16304 265 VSQTPLGRPDSRTCQVYLIM-CGVHQ-----------------------VS--G----IPD------------------- 295 (537)
Q Consensus 265 v~Q~~~l~~~~~~~il~v~D-s~~~~-----------------------~~--~----l~~------------------- 295 (537)
++++++++| .+... .+ . ..+
T Consensus 81 -----------ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~~~~~~~~~~~lg~~~~~~iSa~~g~g 149 (435)
T PRK00093 81 -----------ADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPDEEADAYEFYSLGLGEPYPISAEHGRG 149 (435)
T ss_pred -----------CCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCccchhhHHHHHhcCCCCCEEEEeeCCCC
Confidence 677777777 22100 00 0 000
Q ss_pred ---cccccCc-CCcc-----ccCCccEEEeccCccCccchhhhhcCCCceeeeccccccccee----ccCCceEEEEEec
Q psy16304 296 ---ELTSATH-LPLV-----DFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARV----EYGNKYEVFLYDL 362 (537)
Q Consensus 296 ---~l~~~~~-l~~~-----~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all----~~~e~p~lllLDT 362 (537)
.++.+.. .... ......+.++|.+++||+++++.|.+..+..+.+..+.++..+ ..++ ..+.++||
T Consensus 150 v~~l~~~I~~~~~~~~~~~~~~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~~lvDT 228 (435)
T PRK00093 150 IGDLLDAILEELPEEEEEDEEDEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG-QKYTLIDT 228 (435)
T ss_pred HHHHHHHHHhhCCccccccccccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC-eeEEEEEC
Confidence 0000000 0000 0123467799999999999999999988777766666555432 2244 68999999
Q ss_pred Cchhh----------HHHHH-HHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEeccc-chh
Q psy16304 363 GGSED----------FRTIW-KQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAK-NLS 417 (537)
Q Consensus 363 ~Gl~~----------~~~l~-~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nk-dl~ 417 (537)
+|+.. +.... ..+++.++++++|+|..+........ ..+.+.|+++....|| |+.
T Consensus 229 ~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~ 297 (435)
T PRK00093 229 AGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLV 297 (435)
T ss_pred CCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCC
Confidence 99622 11111 23567789999999988876655444 3345578888888888 763
No 380
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.37 E-value=1.3e-11 Score=140.89 Aligned_cols=210 Identities=20% Similarity=0.261 Sum_probs=133.4
Q ss_pred CCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEEC---CcEEEEEeecCCCchhh--------HHHHhhhhc
Q psy16304 196 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYG---NKYEVFLYDLGGSEDFR--------TIWKQYLGT 264 (537)
Q Consensus 196 G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~---g~~~i~~~D~~G~~~~r--------~~~~~~i~~ 264 (537)
-.+|+|+|.+|+|||||+|.|+|...+...++.|+|++.+... ++..+.+||++|+.... ......+.
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~- 353 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVS- 353 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHH-
Confidence 4579999999999999999999987666778889888766542 24789999999975311 11111122
Q ss_pred cccCCCCCCCccceeeEEee-cCc----cc-----------------------------------------------ccC
Q psy16304 265 VSQTPLGRPDSRTCQVYLIM-CGV----HQ-----------------------------------------------VSG 292 (537)
Q Consensus 265 v~Q~~~l~~~~~~~il~v~D-s~~----~~-----------------------------------------------~~~ 292 (537)
.++++++|+| ... +. ..+
T Consensus 354 ----------~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~~~~~~~~~~lg~~~~~~iSA~~g~G 423 (712)
T PRK09518 354 ----------LADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQASEYDAAEFWKLGLGEPYPISAMHGRG 423 (712)
T ss_pred ----------hCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccchhhHHHHHHcCCCCeEEEECCCCCC
Confidence 2777888887 211 00 000
Q ss_pred Cccccccc-CcCCcc--------ccCCccEEEeccCccCccchhhhhcCCCceeeecccccccce----eccCCceEEEE
Q psy16304 293 IPDELTSA-THLPLV--------DFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRAR----VEYGNKYEVFL 359 (537)
Q Consensus 293 l~~~l~~~-~~l~~~--------~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~al----l~~~e~p~lll 359 (537)
+.+.++++ ..+... ......+.++|.+++||+++++.|.++++..++...++++.. +..++ .++.+
T Consensus 424 I~eLl~~i~~~l~~~~~~~~a~~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~-~~~~l 502 (712)
T PRK09518 424 VGDLLDEALDSLKVAEKTSGFLTPSGLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDG-EDWLF 502 (712)
T ss_pred chHHHHHHHHhcccccccccccCCCCCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECC-CEEEE
Confidence 00000000 000000 011245779999999999999999998865555544444432 33354 67889
Q ss_pred EecCchhh----------HHHHH-HHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEeccc-chh
Q psy16304 360 YDLGGSED----------FRTIW-KQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAK-NLS 417 (537)
Q Consensus 360 LDT~Gl~~----------~~~l~-~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nk-dl~ 417 (537)
|||+|+.. +..+. ...++.++++++|+|..+..+..... ..+.+.|+++....|| |+.
T Consensus 503 iDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~ 574 (712)
T PRK09518 503 IDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLM 574 (712)
T ss_pred EECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcC
Confidence 99999721 11111 23356789999999998876666555 2344578888888888 774
No 381
>KOG0073|consensus
Probab=99.30 E-value=3.9e-12 Score=115.89 Aligned_cols=92 Identities=36% Similarity=0.739 Sum_probs=82.0
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCC
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPD 274 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~ 274 (537)
+..++.++|++||||||+++.+.|.....+.||-||...++.+.+ +.+.+||.+|+...|+.|+.|+..
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Iktl~~~~-~~L~iwDvGGq~~lr~~W~nYfes---------- 83 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIKTLEYKG-YTLNIWDVGGQKTLRSYWKNYFES---------- 83 (185)
T ss_pred heeEEEEEecCCCCchhHHHHhcCCCccccCCccceeeEEEEecc-eEEEEEEcCCcchhHHHHHHhhhc----------
Confidence 467799999999999999999999988888999999999999997 999999999999999999999998
Q ss_pred ccceeeEEee-cCcccccCCccccc
Q psy16304 275 SRTCQVYLIM-CGVHQVSGIPDELT 298 (537)
Q Consensus 275 ~~~~il~v~D-s~~~~~~~l~~~l~ 298 (537)
++++++|+| +++.++++....+.
T Consensus 84 -tdglIwvvDssD~~r~~e~~~~L~ 107 (185)
T KOG0073|consen 84 -TDGLIWVVDSSDRMRMQECKQELT 107 (185)
T ss_pred -cCeEEEEEECchHHHHHHHHHHHH
Confidence 999999999 77766655554443
No 382
>KOG0070|consensus
Probab=99.29 E-value=1.5e-12 Score=121.40 Aligned_cols=124 Identities=31% Similarity=0.611 Sum_probs=97.7
Q ss_pred ccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCC
Q psy16304 191 LFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL 270 (537)
Q Consensus 191 l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~ 270 (537)
+..++..+|.+||..||||||++..|...++-...||.||+.+++.+.+ +++..||.+|+.++|.+|+.|+..
T Consensus 12 ~~~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfnVE~v~ykn-~~f~vWDvGGq~k~R~lW~~Y~~~------ 84 (181)
T KOG0070|consen 12 LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFNVETVEYKN-ISFTVWDVGGQEKLRPLWKHYFQN------ 84 (181)
T ss_pred ccCcceEEEEEEeccCCCceeeeEeeccCCcccCCCccccceeEEEEcc-eEEEEEecCCCcccccchhhhccC------
Confidence 3345678899999999999999999987776556999999999999996 999999999999999999999888
Q ss_pred CCCCccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcC
Q psy16304 271 GRPDSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILG 332 (537)
Q Consensus 271 l~~~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSg 332 (537)
++++++|+| +++++..+..+.+..+-.... ....++.++ +.|..+++.+|-
T Consensus 85 -----t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~--l~~~~llv~----aNKqD~~~als~ 136 (181)
T KOG0070|consen 85 -----TQGLIFVVDSSDRERIEEAKEELHRMLAEPE--LRNAPLLVF----ANKQDLPGALSA 136 (181)
T ss_pred -----CcEEEEEEeCCcHHHHHHHHHHHHHHHcCcc--cCCceEEEE----echhhccccCCH
Confidence 999999999 888888877776654422211 233445554 345555555553
No 383
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.28 E-value=5.5e-13 Score=132.44 Aligned_cols=65 Identities=5% Similarity=0.022 Sum_probs=42.6
Q ss_pred chhhhhcCCCceeeecccccccceec--cCCceEEEEEe--cCchh--hHHHHHHHHHhcC-CEEEEEEeCCCcchhh
Q psy16304 325 SIIKRILGEPIISLVPTVGFNRARVE--YGNKYEVFLYD--LGGSE--DFRTIWKQYLGTV-SQTLLVSHSLSGRPDD 395 (537)
Q Consensus 325 ~li~~LSgG~rqrvs~ti~la~all~--~~e~p~lllLD--T~Gl~--~~~~l~~~~~~~~-~~vIlVvdshd~~~~~ 395 (537)
..+..|||||++|+ +++++++. .++ |+++++| |+|++ ....+++.+.+.. +.+++++ +|+.+...
T Consensus 154 ~~~~~lS~G~~~r~----~la~~l~~~~~~~-~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~-~h~~~~~~ 225 (243)
T cd03272 154 QEMQQLSGGQKSLV----ALALIFAIQKCDP-APFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITT-TFRPELLE 225 (243)
T ss_pred ccccccCHHHHHHH----HHHHHHHHhccCC-CCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEE-ecCHHHHh
Confidence 44788999999999 99999863 243 7999999 88983 2233333333322 3455555 67655443
No 384
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.26 E-value=7.6e-13 Score=127.79 Aligned_cols=154 Identities=12% Similarity=0.047 Sum_probs=86.7
Q ss_pred ccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceee-----eeEEEEECCcEEEEEeecCCCchhhHHHHhhhh
Q psy16304 189 LSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF-----NRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLG 263 (537)
Q Consensus 189 ~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~-----t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~ 263 (537)
+++.+.+| +++|+||||||||||+++|.|. ..+..|. ....+.+.+ . +. .. ......++
T Consensus 16 ~~l~~~~g-~~~i~G~nGsGKStll~al~~l----~~~~~~~~~~~~~~~~~~~~~-~-----~~--~~---~~~~~~v~ 79 (197)
T cd03278 16 TTIPFPPG-LTAIVGPNGSGKSNIIDAIRWV----LGEQSAKSLRGEKMSDVIFAG-S-----ET--RK---PANFAEVT 79 (197)
T ss_pred eeeecCCC-cEEEECCCCCCHHHHHHHHHHH----hccccchhhcccCHHHHhccC-C-----CC--CC---CCceEEEE
Confidence 34556688 9999999999999999999987 5554330 001222222 1 10 00 01125688
Q ss_pred ccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccc
Q psy16304 264 TVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG 343 (537)
Q Consensus 264 ~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~ 343 (537)
++||++..+ +... . .+.+.+.++ . .+. ....+.+||+||++++ +
T Consensus 80 ~vfq~~~~~--------~~~~-~---~~~~~~~l~----------------~---~~~-~~~~~~~LS~G~kqrl----~ 123 (197)
T cd03278 80 LTFDNSDGR--------YSII-S---QGDVSEIIE----------------A---PGK-KVQRLSLLSGGEKALT----A 123 (197)
T ss_pred EEEEcCCCc--------eeEE-e---hhhHHHHHh----------------C---CCc-cccchhhcCHHHHHHH----H
Confidence 899987743 0000 0 000111111 1 111 2344789999999999 8
Q ss_pred cccceec--cCCceEEEEEe--cCchhhH--HHHHHHHHhc-CCEEEEEEeCCCcchhhh
Q psy16304 344 FNRARVE--YGNKYEVFLYD--LGGSEDF--RTIWKQYLGT-VSQTLLVSHSLSGRPDDR 396 (537)
Q Consensus 344 la~all~--~~e~p~lllLD--T~Gl~~~--~~l~~~~~~~-~~~vIlVvdshd~~~~~~ 396 (537)
++++++. ..+ |+++++| |+|++.. ..+++.+.+. .+.+++++ +|+......
T Consensus 124 la~~l~~~~~~~-~~illlDEP~~~LD~~~~~~l~~~l~~~~~~~tiIii-tH~~~~~~~ 181 (197)
T cd03278 124 LALLFAIFRVRP-SPFCVLDEVDAALDDANVERFARLLKEFSKETQFIVI-THRKGTMEA 181 (197)
T ss_pred HHHHHHHhccCC-CCEEEEeCCcccCCHHHHHHHHHHHHHhccCCEEEEE-ECCHHHHhh
Confidence 8887752 133 6899999 8888322 2222222221 13456666 788766543
No 385
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.24 E-value=1.6e-12 Score=130.56 Aligned_cols=95 Identities=8% Similarity=0.076 Sum_probs=64.6
Q ss_pred cEEEeccCccCccchhhhhcCCCceeeecccccccceeccC-CceEEEEEe--cCchh-----hHHHHHHHHHhcCCEEE
Q psy16304 312 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYG-NKYEVFLYD--LGGSE-----DFRTIWKQYLGTVSQTL 383 (537)
Q Consensus 312 ~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~-e~p~lllLD--T~Gl~-----~~~~l~~~~~~~~~~vI 383 (537)
.+..+|+........+.+|||||+||+ .++++++..+ + |+++++| |+|++ .....+..+.+. +.++
T Consensus 152 ~L~~vgL~~l~l~~~~~~LSgGe~QRl----~LAraL~~~~~~-p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~-g~tv 225 (261)
T cd03271 152 TLCDVGLGYIKLGQPATTLSGGEAQRI----KLAKELSKRSTG-KTLYILDEPTTGLHFHDVKKLLEVLQRLVDK-GNTV 225 (261)
T ss_pred HHHHcCCchhhhcCccccCCHHHHHHH----HHHHHHhcCCCC-CcEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEE
Confidence 344567765222444889999999999 9999998632 3 7899999 99992 222333444333 3456
Q ss_pred EEEeCCCcchhhhhh-hhhh------cCCcEEEEecc
Q psy16304 384 LVSHSLSGRPDDRCQ-VYLM------SCNCQVYLISA 413 (537)
Q Consensus 384 lVvdshd~~~~~~~~-i~ll------~~G~ii~~g~n 413 (537)
+++ +|++.....++ ++.+ +.|+++..|++
T Consensus 226 Iii-tH~~~~i~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 226 VVI-EHNLDVIKCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred EEE-eCCHHHHHhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 666 78887776555 7777 68888887753
No 386
>KOG0084|consensus
Probab=99.22 E-value=2.2e-11 Score=114.40 Aligned_cols=109 Identities=21% Similarity=0.381 Sum_probs=90.5
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee--eeeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCC
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL 270 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G--~t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~ 270 (537)
.-.++.|+|.+|+|||+|+..+++..| ..+..|.| |...++.++| .+++++||++||+++|.+...++..
T Consensus 8 ylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~------ 81 (205)
T KOG0084|consen 8 YLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRG------ 81 (205)
T ss_pred eEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccC------
Confidence 447899999999999999999999988 45778999 6677888887 5789999999999999999999888
Q ss_pred CCCCccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEEec
Q psy16304 271 GRPDSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVLG 317 (537)
Q Consensus 271 l~~~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llG 317 (537)
++++++++| ++.+.+.++..|+..++.+ ........++|
T Consensus 82 -----ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~---~~~~v~~lLVG 121 (205)
T KOG0084|consen 82 -----AHGIIFVYDITKQESFNNVKRWIQEIDRY---ASENVPKLLVG 121 (205)
T ss_pred -----CCeEEEEEEcccHHHhhhHHHHHHHhhhh---ccCCCCeEEEe
Confidence 999999999 9999999988876655443 23334555665
No 387
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.21 E-value=2.3e-12 Score=125.91 Aligned_cols=75 Identities=12% Similarity=0.091 Sum_probs=49.4
Q ss_pred chhhhhcCCCceeeecccccccceecc--------CCceEEEEEe--cCchhh-----HHHHHHHHHhcCCEEEEEEeCC
Q psy16304 325 SIIKRILGEPIISLVPTVGFNRARVEY--------GNKYEVFLYD--LGGSED-----FRTIWKQYLGTVSQTLLVSHSL 389 (537)
Q Consensus 325 ~li~~LSgG~rqrvs~ti~la~all~~--------~e~p~lllLD--T~Gl~~-----~~~l~~~~~~~~~~vIlVvdsh 389 (537)
..+..||+|+++++ +++++++.. .+ |+++++| |++++. +...+..+.+. ..+++++ +|
T Consensus 119 ~~~~~lS~G~~~r~----~la~al~~~p~~~~~~~~~-~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~-~~tii~i-tH 191 (213)
T cd03279 119 RPVSTLSGGETFLA----SLSLALALSEVLQNRGGAR-LEALFIDEGFGTLDPEALEAVATALELIRTE-NRMVGVI-SH 191 (213)
T ss_pred CCccccCHHHHHHH----HHHHHHHhHHHhhhccCCC-CCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEE-EC
Confidence 34788999999999 888888642 13 7899999 888832 23333444333 3466666 78
Q ss_pred Ccchhhhhh--hhhhcCCc
Q psy16304 390 SGRPDDRCQ--VYLMSCNC 406 (537)
Q Consensus 390 d~~~~~~~~--i~ll~~G~ 406 (537)
+++.....+ ++++++|.
T Consensus 192 ~~~~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 192 VEELKERIPQRLEVIKTPG 210 (213)
T ss_pred chHHHHhhCcEEEEEecCC
Confidence 887666544 66666553
No 388
>KOG0071|consensus
Probab=99.20 E-value=2.1e-11 Score=108.40 Aligned_cols=123 Identities=27% Similarity=0.521 Sum_probs=96.3
Q ss_pred CCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304 194 FRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP 273 (537)
Q Consensus 194 ~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~ 273 (537)
.+..++..+|..||||||++..|.-.......||.||+.++|.+.+ +.+..||.+|+...|..|++|+..
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFnvetVtykN-~kfNvwdvGGqd~iRplWrhYy~g--------- 84 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKN-VKFNVWDVGGQDKIRPLWRHYYTG--------- 84 (180)
T ss_pred cccceEEEEecccCCceehhhHHhcCCCcccccccceeEEEEEeee-eEEeeeeccCchhhhHHHHhhccC---------
Confidence 3567899999999999999999998766667899999999999996 999999999999999999999887
Q ss_pred CccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCC
Q psy16304 274 DSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEP 334 (537)
Q Consensus 274 ~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~ 334 (537)
+.+++||+| +++++.++...++..+-+ ........+.++ +.|..++..+|-.+
T Consensus 85 --tqglIFV~Dsa~~dr~eeAr~ELh~ii~--~~em~~~~~Lvl----ANkQDlp~A~~pqe 138 (180)
T KOG0071|consen 85 --TQGLIFVVDSADRDRIEEARNELHRIIN--DREMRDAIILIL----ANKQDLPDAMKPQE 138 (180)
T ss_pred --CceEEEEEeccchhhHHHHHHHHHHHhC--CHhhhcceEEEE----ecCcccccccCHHH
Confidence 999999999 777777776666544422 222233444444 34566566666554
No 389
>KOG0065|consensus
Probab=99.20 E-value=2.2e-11 Score=140.83 Aligned_cols=192 Identities=16% Similarity=0.185 Sum_probs=115.1
Q ss_pred ccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhc
Q psy16304 185 LPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGT 264 (537)
Q Consensus 185 ~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~ 264 (537)
+-++++-..++|...||+|.+||||||||+.|+|. -+.|+...+|.++| .. .|+ ...++..||
T Consensus 806 LL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R------~t~G~I~Gdi~i~G-~p---~~q-------~tF~R~~GY 868 (1391)
T KOG0065|consen 806 LLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGR------KTGGYIEGDILISG-FP---KDQ-------ETFARVSGY 868 (1391)
T ss_pred hhhcCceEecCCceeehhcCCCCchHHHHHHHhcC------cccceEEeEEEECC-ee---Cch-------hhhccccce
Confidence 34455566779999999999999999999999997 25665555888877 21 121 233478999
Q ss_pred cccCCCCCCCccceeeEEeec---------CcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCc
Q psy16304 265 VSQTPLGRPDSRTCQVYLIMC---------GVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPI 335 (537)
Q Consensus 265 v~Q~~~l~~~~~~~il~v~Ds---------~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~r 335 (537)
|.|+....+..+..--+.+.+ ..+..+-+++.++.+ +++. ..=.++|.++.| ||.+||
T Consensus 869 vqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~ll-eL~~-----~~daiVG~~G~G-------Ls~eQR 935 (1391)
T KOG0065|consen 869 VEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELL-ELKE-----YADALVGLPGSG-------LSTEQR 935 (1391)
T ss_pred eecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHh-Cchh-----hhhhhccCCCCC-------CCHHHh
Confidence 999877554433311111100 000000011100000 0111 111156666655 999999
Q ss_pred eeeecccccccceeccCCce-EEEEEe--cCchhhHHH-----HHHHHHhcCCEEEEEEeCCCcc--hhhhhh-hhhhc-
Q psy16304 336 ISLVPTVGFNRARVEYGNKY-EVFLYD--LGGSEDFRT-----IWKQYLGTVSQTLLVSHSLSGR--PDDRCQ-VYLMS- 403 (537)
Q Consensus 336 qrvs~ti~la~all~~~e~p-~lllLD--T~Gl~~~~~-----l~~~~~~~~~~vIlVvdshd~~--~~~~~~-i~ll~- 403 (537)
.|+ .++..++. + | .+++|| |+||+.... ..+++.+.+. +|+.+ +|.+. -++.-+ ..+|+
T Consensus 936 KrL----TIgVELvA-~--P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGq-tIlCT-IHQPS~~ife~FD~LLLLkr 1006 (1391)
T KOG0065|consen 936 KRL----TIGVELVA-N--PSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQ-TILCT-IHQPSIDIFEAFDELLLLKR 1006 (1391)
T ss_pred cee----eEEEEEec-C--CceeEEecCCCCCccHHHHHHHHHHHHHHHhcCC-eEEEE-ecCCcHHHHHHHhHHHHHhc
Confidence 999 89999996 4 6 899999 999965544 2345555443 45555 66654 445544 66666
Q ss_pred CCcEEEEecccc
Q psy16304 404 CNCQVYLISAKN 415 (537)
Q Consensus 404 ~G~ii~~g~nkd 415 (537)
.|+.+..|...+
T Consensus 1007 GGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 1007 GGQTVYFGPLGE 1018 (1391)
T ss_pred CCeEEEecCccc
Confidence 466666666553
No 390
>KOG0062|consensus
Probab=99.19 E-value=7.2e-12 Score=132.38 Aligned_cols=174 Identities=14% Similarity=0.093 Sum_probs=109.4
Q ss_pred ccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCC
Q psy16304 191 LFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL 270 (537)
Q Consensus 191 l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~ 270 (537)
+...--.++++||+||+||||+++++.|. ..|+.| .+.+.+..++ ++.+|.-.
T Consensus 385 ~d~e~~sRi~~vg~ng~gkst~lKi~~~~----l~~~rg----i~~~~~r~ri-------------------~~f~Qhhv 437 (582)
T KOG0062|consen 385 LDRESDSRISRVGENGDGKSTLLKILKGD----LTPTRG----IVGRHPRLRI-------------------KYFAQHHV 437 (582)
T ss_pred CccchhhhhheeccCchhHHHHHHHHhcc----CCcccc----eeeeccccee-------------------cchhHhhh
Confidence 34556788999999999999999999999 899999 5554442333 33222211
Q ss_pred CCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceec
Q psy16304 271 GRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVE 350 (537)
Q Consensus 271 l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~ 350 (537)
-+.+... ..+| .......+. -..+....+..+|+++..-...+..|||||+.|+ ++|.....
T Consensus 438 d~l~~~v---~~vd----------~~~~~~pG~-~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrv----afA~~~~~ 499 (582)
T KOG0062|consen 438 DFLDKNV---NAVD----------FMEKSFPGK-TEEEIRRHLGSFGLSGELALQSIASLSGGQKSRV----AFAACTWN 499 (582)
T ss_pred hHHHHHh---HHHH----------HHHHhCCCC-CHHHHHHHHHhcCCCchhhhccccccCCcchhHH----HHHHHhcC
Confidence 0000000 0000 000000000 1111223455678776654554788999999999 88877774
Q ss_pred cCCceEEEEEe--cCchh--hHHHHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEeccc
Q psy16304 351 YGNKYEVFLYD--LGGSE--DFRTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAK 414 (537)
Q Consensus 351 ~~e~p~lllLD--T~Gl~--~~~~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nk 414 (537)
+ |-+++|| |++++ ....+.+.+ +..+|.|+++ +||.++...+| +|+.++|++.-+-+..
T Consensus 500 --~-PhlLVLDEPTNhLD~dsl~AL~~Al-~~F~GGVv~V-SHd~~fi~~~c~E~Wvve~g~vt~ieg~~ 564 (582)
T KOG0062|consen 500 --N-PHLLVLDEPTNHLDRDSLGALAKAL-KNFNGGVVLV-SHDEEFISSLCKELWVVEDGKVTPIEGGI 564 (582)
T ss_pred --C-CcEEEecCCCccccHHHHHHHHHHH-HhcCCcEEEE-ECcHHHHhhcCceeEEEcCCcEEeeeccH
Confidence 4 8999999 99993 333333444 4455656666 79999888777 9999999987654444
No 391
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.18 E-value=4.3e-11 Score=113.25 Aligned_cols=93 Identities=31% Similarity=0.718 Sum_probs=79.8
Q ss_pred CCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304 194 FRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP 273 (537)
Q Consensus 194 ~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~ 273 (537)
.+..+++++|+.||||||+++.|.........||.|++...+.+.+ ..+.+||.+|+..++..|+.++..
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~~~i~~~~-~~~~~~d~gG~~~~~~~w~~y~~~--------- 81 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNIEEIKYKG-YSLTIWDLGGQESFRPLWKSYFQN--------- 81 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEEEEEEETT-EEEEEEEESSSGGGGGGGGGGHTT---------
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccccCcccccccceeeeCc-EEEEEEeccccccccccceeeccc---------
Confidence 4678899999999999999999998766678899999999999986 999999999999999999988877
Q ss_pred CccceeeEEee-cCcccccCCccccc
Q psy16304 274 DSRTCQVYLIM-CGVHQVSGIPDELT 298 (537)
Q Consensus 274 ~~~~~il~v~D-s~~~~~~~l~~~l~ 298 (537)
++++++|+| ++.+++.+..+.+.
T Consensus 82 --~~~iIfVvDssd~~~l~e~~~~L~ 105 (175)
T PF00025_consen 82 --ADGIIFVVDSSDPERLQEAKEELK 105 (175)
T ss_dssp --ESEEEEEEETTGGGGHHHHHHHHH
T ss_pred --cceeEEEEecccceeecccccchh
Confidence 899999999 66665555544443
No 392
>KOG0074|consensus
Probab=99.17 E-value=2.9e-11 Score=107.54 Aligned_cols=92 Identities=36% Similarity=0.690 Sum_probs=82.5
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCC
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPD 274 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~ 274 (537)
+..+++++|..+|||||+|+.|.+.....+.||.||+..++.++|...+.+||.+|+...|..|..|+..
T Consensus 16 rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYyen---------- 85 (185)
T KOG0074|consen 16 REIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYEN---------- 85 (185)
T ss_pred ceEEEEEEecCCCcchhHHHHHccCChhhccccCCcceEEEeecCcEEEEEEecCCccccchhhhhhhhc----------
Confidence 5678999999999999999999999887889999999999999999999999999999999999999998
Q ss_pred ccceeeEEee-cCcccccCCcccc
Q psy16304 275 SRTCQVYLIM-CGVHQVSGIPDEL 297 (537)
Q Consensus 275 ~~~~il~v~D-s~~~~~~~l~~~l 297 (537)
.+.+++|+| +++.++++..+.+
T Consensus 86 -vd~lIyVIDS~D~krfeE~~~el 108 (185)
T KOG0074|consen 86 -VDGLIYVIDSTDEKRFEEISEEL 108 (185)
T ss_pred -cceEEEEEeCCchHhHHHHHHHH
Confidence 999999999 6666666554433
No 393
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.17 E-value=2.3e-11 Score=130.60 Aligned_cols=201 Identities=12% Similarity=0.054 Sum_probs=130.2
Q ss_pred ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304 187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS 266 (537)
Q Consensus 187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~ 266 (537)
..+||.+.+||++||.|.-|||+|-|++.|.|. ..+..| ++.++| ..+...+ .+...+..++||+
T Consensus 276 ~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~----~~~~~G----~i~l~G-~~v~~~s------p~~Ai~~Gi~~v~ 340 (500)
T COG1129 276 RDVSFTVRAGEILGIAGLVGAGRTELARALFGA----RPASSG----EILLDG-KPVRIRS------PRDAIKAGIAYVP 340 (500)
T ss_pred eCceeEEeCCcEEEEeccccCCHHHHHHHHhCC----CcCCCc----eEEECC-EEccCCC------HHHHHHcCCEeCC
Confidence 467899999999999999999999999999998 788999 999998 5554432 2234456788888
Q ss_pred cCCCCCCCccceeeEEee-cCcccccCCccccc--ccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccc
Q psy16304 267 QTPLGRPDSRTCQVYLIM-CGVHQVSGIPDELT--SATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG 343 (537)
Q Consensus 267 Q~~~l~~~~~~~il~v~D-s~~~~~~~l~~~l~--~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~ 343 (537)
.+-. .++++...+ ...-....+..... ++..-.........+..+++....-...+..||||.+|++ .
T Consensus 341 EDRk-----~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKV----v 411 (500)
T COG1129 341 EDRK-----SEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKV----V 411 (500)
T ss_pred cccc-----cCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhH----H
Confidence 7754 333332222 00000000000000 1111111111122223444444444566899999999999 9
Q ss_pred cccceeccCCceEEEEEe--cCch-----hhHHHHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEeccc
Q psy16304 344 FNRARVEYGNKYEVFLYD--LGGS-----EDFRTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAK 414 (537)
Q Consensus 344 la~all~~~e~p~lllLD--T~Gl-----~~~~~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nk 414 (537)
+++.+.. + |++++|| |-|. .++..+++++.+++. +|+++ +.++.+...++ +.+|.+|++.......
T Consensus 412 larwL~~-~--p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~-ail~i-SSElpEll~~~DRIlVm~~Gri~~e~~~~ 486 (500)
T COG1129 412 LARWLAT-D--PKVLILDEPTRGIDVGAKAEIYRLIRELAAEGK-AILMI-SSELPELLGLSDRILVMREGRIVGELDRE 486 (500)
T ss_pred HHHHHhc-C--CCEEEECCCCcCcccchHHHHHHHHHHHHHCCC-EEEEE-eCChHHHHhhCCEEEEEECCEEEEEeccc
Confidence 9999996 5 8999999 8888 455566677776654 45555 55655555333 9999999998876665
Q ss_pred ch
Q psy16304 415 NL 416 (537)
Q Consensus 415 dl 416 (537)
+.
T Consensus 487 ~~ 488 (500)
T COG1129 487 EA 488 (500)
T ss_pred cC
Confidence 43
No 394
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.13 E-value=6e-11 Score=115.89 Aligned_cols=154 Identities=14% Similarity=0.171 Sum_probs=83.0
Q ss_pred CeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCcc
Q psy16304 197 VPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSR 276 (537)
Q Consensus 197 ~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~ 276 (537)
++++|+|||||||||++++|... -| .+. .......+++++|....++..+
T Consensus 26 ~i~~ivGpNGaGKSTll~~i~~~--------~G-----------~~~-----------~~~~~~~i~~~~~~~~~~~~~~ 75 (212)
T cd03274 26 SFSAIVGPNGSGKSNVIDSMLFV--------FG-----------FRA-----------SKMRQKKLSDLIHNSAGHPNLD 75 (212)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--------hc-----------cCH-----------HHhhhhhHHHHhcCCCCCCCCc
Confidence 78999999999999999999722 11 000 0111135777777766544433
Q ss_pred ceee-EEeecCcccccCCcccccccCcCCc-cc----cCCccEEEeccCccCccchhhhhcCCCceeeecccccccceec
Q psy16304 277 TCQV-YLIMCGVHQVSGIPDELTSATHLPL-VD----FRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVE 350 (537)
Q Consensus 277 ~~il-~v~Ds~~~~~~~l~~~l~~~~~l~~-~~----~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~ 350 (537)
..-+ ..+.. .... +.+... ++.. .. ........+++++.. ...+..||+|+++++ +++++++.
T Consensus 76 ~~~~~~~~~~-~~~~----~~l~~~-g~~~~~~~~~v~~~~~~~~~~L~~~~-~~~~~~lS~G~~~r~----~la~al~~ 144 (212)
T cd03274 76 SCSVEVHFQE-IIDK----PLLKSK-GIDLDHNRFLILQGEVEQIAQMPKKS-WKNISNLSGGEKTLS----SLALVFAL 144 (212)
T ss_pred eEEEEEEEEe-CCCH----HHHHHC-CcCCCCCceEEcCCcEEEeecccccc-ccchhhcCHHHHHHH----HHHHHHHh
Confidence 2211 12210 0000 000000 0000 00 113344577776554 444889999999999 99988853
Q ss_pred c--CCceEEEEEe--cCchh--hHHHHHHHHHhc-CCEEEEEEeCCCcch
Q psy16304 351 Y--GNKYEVFLYD--LGGSE--DFRTIWKQYLGT-VSQTLLVSHSLSGRP 393 (537)
Q Consensus 351 ~--~e~p~lllLD--T~Gl~--~~~~l~~~~~~~-~~~vIlVvdshd~~~ 393 (537)
. ++ |+++++| |+|++ ....+++.+.+. .+++++++ +|+...
T Consensus 145 ~~~~~-p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iiv-s~~~~~ 192 (212)
T cd03274 145 HHYKP-TPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVI-SLRNNM 192 (212)
T ss_pred cccCC-CCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEE-ECcHHH
Confidence 1 33 7999999 88883 233333333222 23455555 465443
No 395
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.12 E-value=4.7e-11 Score=124.63 Aligned_cols=153 Identities=15% Similarity=0.177 Sum_probs=89.9
Q ss_pred CCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304 193 DFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR 272 (537)
Q Consensus 193 ~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~ 272 (537)
+..||++|++||||-|||||+++|+|. +.|+.| . ..+.++++-.+-=..++....+..+....
T Consensus 364 i~~gEvigilGpNgiGKTTFvk~LAG~----ikPdeg----~---~~~~~vSyKPQyI~~~~~gtV~~~l~~~~------ 426 (591)
T COG1245 364 IYDGEVIGILGPNGIGKTTFVKLLAGV----IKPDEG----S---EEDLKVSYKPQYISPDYDGTVEDLLRSAI------ 426 (591)
T ss_pred eecceEEEEECCCCcchHHHHHHHhcc----ccCCCC----C---CccceEeecceeecCCCCCcHHHHHHHhh------
Confidence 457999999999999999999999999 999999 3 11233332221000000000001000000
Q ss_pred CCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccC
Q psy16304 273 PDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYG 352 (537)
Q Consensus 273 ~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~ 352 (537)
...+ ...+ . ....+.-+.+.... .+.+..||||+.||+ ++|.++.. +
T Consensus 427 --------------~~~~---------~~s~-~---~~ei~~pl~l~~i~-e~~v~~LSGGELQRv----aIaa~L~r-e 473 (591)
T COG1245 427 --------------RSAF---------GSSY-F---KTEIVKPLNLEDLL-ERPVDELSGGELQRV----AIAAALSR-E 473 (591)
T ss_pred --------------hhhc---------ccch-h---HHhhcCccchHHHH-hcccccCCchhHHHH----HHHHHhcc-c
Confidence 0000 0000 0 00111123333332 344788999999999 88888885 4
Q ss_pred CceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhhh
Q psy16304 353 NKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ 398 (537)
Q Consensus 353 e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~~ 398 (537)
.++-+|| .++++.. ...++.+....+.+.+|+ .||....+.+.
T Consensus 474 --ADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vV-dHDi~~~dyvs 523 (591)
T COG1245 474 --ADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVV-DHDIYMIDYVS 523 (591)
T ss_pred --cCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEE-ecceehhhhhh
Confidence 7899999 6677222 224467777777888888 89988877665
No 396
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.11 E-value=1.5e-11 Score=119.38 Aligned_cols=73 Identities=10% Similarity=0.090 Sum_probs=43.1
Q ss_pred hhhhhcCCCceeeecc--cccccceeccCCceEEEEEe--cCchhhH--H-HHH---HHHHhcCCEEEEEEeCCCcchhh
Q psy16304 326 IIKRILGEPIISLVPT--VGFNRARVEYGNKYEVFLYD--LGGSEDF--R-TIW---KQYLGTVSQTLLVSHSLSGRPDD 395 (537)
Q Consensus 326 li~~LSgG~rqrvs~t--i~la~all~~~e~p~lllLD--T~Gl~~~--~-~l~---~~~~~~~~~vIlVvdshd~~~~~ 395 (537)
.+..||+|+++++.-. ++++++++. + |+++++| +++++.. . .++ ..+.+....+++++ +|+++...
T Consensus 112 ~~~~LS~G~~~~~~la~rlala~al~~-~--p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiii-tH~~~~~~ 187 (204)
T cd03240 112 MRGRCSGGEKVLASLIIRLALAETFGS-N--CGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVI-THDEELVD 187 (204)
T ss_pred CccccCccHHHHHHHHHHHHHHHHhcc-C--CCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEE-EecHHHHh
Confidence 3678999999864211 156777764 4 8999999 8888432 2 222 33333223455666 67766554
Q ss_pred hhh-hhhh
Q psy16304 396 RCQ-VYLM 402 (537)
Q Consensus 396 ~~~-i~ll 402 (537)
.++ ++.+
T Consensus 188 ~~d~i~~l 195 (204)
T cd03240 188 AADHIYRV 195 (204)
T ss_pred hCCEEEEE
Confidence 444 4444
No 397
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.07 E-value=5.6e-11 Score=130.03 Aligned_cols=252 Identities=12% Similarity=0.115 Sum_probs=136.6
Q ss_pred CCcccccccceeeeeeecc-------chhhhhHHHHHhhhcccccccccccccccCccccccc----cCCCCCC---chh
Q psy16304 72 IEPIEMVEHKMLRDVVLYN-------MYKAEIWAILRLQKNIHNIACKDMNMQNVPNFQTSSV----LSDDPAP---TFE 137 (537)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~---p~~ 137 (537)
|-|+=+-+|.....++.|= .|-.+..+++-+..++.+|+.=.+.+.|+-+|..+-. ....+.. .++
T Consensus 305 v~P~li~ap~~f~g~i~~G~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~ 384 (604)
T COG4178 305 VLPILIAAPRYFSGQITFGGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRID 384 (604)
T ss_pred HHHHHhccHhhhcCcChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCccccccc
Confidence 3444455555555555553 3667778888888888888888888888877753111 1111111 111
Q ss_pred HHHHHHHHHHHHhhhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHh
Q psy16304 138 VCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRIL 217 (537)
Q Consensus 138 ~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~ 217 (537)
+ ... - +..+.++|++-.-+... .+....++.+.+|+.+.|.|+||||||||++.|+
T Consensus 385 ~-----~~~-~-~~~i~~~nl~l~~p~~~-----------------~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaia 440 (604)
T COG4178 385 F-----DDN-A-DHGITLENLSLRTPDGQ-----------------TLLSELNFEVRPGERLLITGESGAGKTSLLRALA 440 (604)
T ss_pred c-----ccc-c-cceeEEeeeeEECCCCC-----------------eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHh
Confidence 1 000 0 24556666666422211 1234566778899999999999999999999999
Q ss_pred CCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccc
Q psy16304 218 GEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDEL 297 (537)
Q Consensus 218 G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l 297 (537)
|. -+--+| ++....+..+-++.+...-... ..++.+.| |+... .-.-+++.+.|
T Consensus 441 GL----WP~g~G----~I~~P~~~~~lflpQ~PY~p~G-tLre~l~Y-P~~~~----------------~~~d~~l~~vL 494 (604)
T COG4178 441 GL----WPWGSG----RISMPADSALLFLPQRPYLPQG-TLREALCY-PNAAP----------------DFSDAELVAVL 494 (604)
T ss_pred cc----CccCCC----ceecCCCCceEEecCCCCCCCc-cHHHHHhC-CCCCC----------------CCChHHHHHHH
Confidence 98 666667 6665532333333332111000 11122222 11110 00000011111
Q ss_pred cccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHHH--HHH
Q psy16304 298 TSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRT--IWK 373 (537)
Q Consensus 298 ~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~--l~~ 373 (537)
...+ +... ...+ .+ ..+--..||+||+||+ ++||.+++ + |++.+|| |++++...+ +.+
T Consensus 495 ~~vg-L~~L------~~rl--~~--~~~W~~vLS~GEqQRl----afARilL~-k--P~~v~LDEATsALDe~~e~~l~q 556 (604)
T COG4178 495 HKVG-LGDL------AERL--DE--EDRWDRVLSGGEQQRL----AFARLLLH-K--PKWVFLDEATSALDEETEDRLYQ 556 (604)
T ss_pred HHcC-cHHH------HHHH--hc--cCcHhhhcChhHHHHH----HHHHHHHc-C--CCEEEEecchhccChHHHHHHHH
Confidence 1110 0000 0001 11 1122456999999999 99999998 5 8999999 999954433 234
Q ss_pred HHHhc-CCEEEEEEeCCCcc
Q psy16304 374 QYLGT-VSQTLLVSHSLSGR 392 (537)
Q Consensus 374 ~~~~~-~~~vIlVvdshd~~ 392 (537)
.+.++ -+.++|.+ .|...
T Consensus 557 ~l~~~lp~~tvISV-~Hr~t 575 (604)
T COG4178 557 LLKEELPDATVISV-GHRPT 575 (604)
T ss_pred HHHhhCCCCEEEEe-ccchh
Confidence 44443 45566666 66543
No 398
>KOG0094|consensus
Probab=99.06 E-value=2.8e-10 Score=106.85 Aligned_cols=109 Identities=19% Similarity=0.337 Sum_probs=89.8
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee--eeeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCC
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL 270 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G--~t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~ 270 (537)
+..+++++|..++|||||+...+-..| ..+.+|.| |...++.+.| .+.+++|||+||+++|.+...|+..
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rd------ 94 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD------ 94 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccC------
Confidence 458899999999999999999998877 77999999 6677787776 6899999999999999999999998
Q ss_pred CCCCccceeeEEee-cCcccccCCcccccccCcCCccccC-CccEEEec
Q psy16304 271 GRPDSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFR-SVPILVLG 317 (537)
Q Consensus 271 l~~~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~-~~~L~llG 317 (537)
+.+++.|+| ++...+++...|++..... ... ...+.++|
T Consensus 95 -----s~vaviVyDit~~~Sfe~t~kWi~dv~~e---~gs~~viI~LVG 135 (221)
T KOG0094|consen 95 -----SSVAVIVYDITDRNSFENTSKWIEDVRRE---RGSDDVIIFLVG 135 (221)
T ss_pred -----CeEEEEEEeccccchHHHHHHHHHHHHhc---cCCCceEEEEEc
Confidence 899999999 8888888887766544332 222 24556776
No 399
>KOG2355|consensus
Probab=99.06 E-value=2.9e-10 Score=107.86 Aligned_cols=205 Identities=13% Similarity=0.090 Sum_probs=107.0
Q ss_pred hhhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304 150 GILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG 229 (537)
Q Consensus 150 ~~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G 229 (537)
+..+.+.++...|.... | .+.++ ++....|.+..|||.|||||||||++|+|. .-.-.|
T Consensus 11 ~~aievsgl~f~y~~~d----P-----~~~Df--------nldlp~gsRcLlVGaNGaGKtTlLKiLsGK----hmv~~~ 69 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVSD----P-----IFFDF--------NLDLPAGSRCLLVGANGAGKTTLLKILSGK----HMVGGG 69 (291)
T ss_pred cceEEEeccEEecccCC----c-----eEEEE--------eeccCCCceEEEEecCCCchhhhHHHhcCc----ccccCC
Confidence 45666777766654332 2 23333 355668999999999999999999999998 433335
Q ss_pred eeeEEEEECCcEEEEEeecC----CC-chhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC
Q psy16304 230 FNRARVEYGNKYEVFLYDLG----GS-EDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP 304 (537)
Q Consensus 230 ~t~~~i~i~g~~~i~~~D~~----G~-~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~ 304 (537)
.|.+.|.-.+ .|+. |. .-+...|.+..+. ..+..+ -.| + .+...+..++...
T Consensus 70 ----~v~VlgrsaF--hDt~l~~Sgdl~YLGgeW~~~~~~-agevpl----------q~D-----~-sae~mifgV~g~d 126 (291)
T KOG2355|consen 70 ----VVQVLGRSAF--HDTSLESSGDLSYLGGEWSKTVGI-AGEVPL----------QGD-----I-SAEHMIFGVGGDD 126 (291)
T ss_pred ----eEEEcCcCcc--ccccccccCceeEecccccccccc-cccccc----------ccc-----c-cHHHHHhhccCCC
Confidence 5555441111 1110 00 0000011111110 000000 000 0 0011111122222
Q ss_pred ccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhh--HHHHHHHHHhc--
Q psy16304 305 LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSED--FRTIWKQYLGT-- 378 (537)
Q Consensus 305 ~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~--~~~l~~~~~~~-- 378 (537)
. .+.+..+.++.+.- .-.++..|.||++|+ .++..+++ + .++++|| |.-++- +..+++-+..+
T Consensus 127 p-~Rre~LI~iLDIdl---~WRmHkvSDGqrRRV----QicMGLL~-P--fkVLLLDEVTVDLDVlARadLLeFlkeEce 195 (291)
T KOG2355|consen 127 P-ERREKLIDILDIDL---RWRMHKVSDGQRRRV----QICMGLLK-P--FKVLLLDEVTVDLDVLARADLLEFLKEECE 195 (291)
T ss_pred h-hHhhhhhhheeccc---eEEEeeccccchhhh----HHHHhccc-c--eeEEEeeeeEeehHHHHHHHHHHHHHHHHh
Confidence 2 33444455555432 233778999999999 88888886 6 7999999 777732 23333322222
Q ss_pred CCEEEEEEeCCCcchhhh--hhhhhhcCCcEEE
Q psy16304 379 VSQTLLVSHSLSGRPDDR--CQVYLMSCNCQVY 409 (537)
Q Consensus 379 ~~~vIlVvdshd~~~~~~--~~i~ll~~G~ii~ 409 (537)
..++.+||-+|-.+-++. ..++.+..|++..
T Consensus 196 ~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~ 228 (291)
T KOG2355|consen 196 QRGATIVYATHIFDGLETWPTHLVYIKSGKLVD 228 (291)
T ss_pred hcCcEEEEEeeeccchhhcchhEEEecCCeeee
Confidence 234455554665554444 3477788888765
No 400
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.01 E-value=4.2e-11 Score=124.98 Aligned_cols=184 Identities=16% Similarity=0.127 Sum_probs=103.8
Q ss_pred CCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCC--
Q psy16304 193 DFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL-- 270 (537)
Q Consensus 193 ~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~-- 270 (537)
+.+|..+||+|+||-||||.+++|+|. +.|.-| ...-. ..+..+.+.+-|.-.|+..
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGe----l~PNLG----~~~~p-------------p~wdeVi~~FrGtELq~YF~~ 155 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGE----LKPNLG----RYEDP-------------PSWDEVIKRFRGTELQNYFKK 155 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCc----cccCCC----CCCCC-------------CCHHHHHHHhhhhHHHHHHHH
Confidence 458999999999999999999999999 999998 22211 1122222222222111110
Q ss_pred CCCCccceeeEE---eecCccc-ccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccccccc
Q psy16304 271 GRPDSRTCQVYL---IMCGVHQ-VSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNR 346 (537)
Q Consensus 271 l~~~~~~~il~v---~Ds~~~~-~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~ 346 (537)
++.....+ ... +|.-... -..+.+.++..+ .....+..+..+++.+..+.. +++||||+.||+ ++|.
T Consensus 156 l~~g~~r~-v~K~QYVd~iPk~~KG~v~elLk~~d---e~g~~devve~l~L~nvl~r~-v~~LSGGELQr~----aIaa 226 (591)
T COG1245 156 LYEGELRA-VHKPQYVDLIPKVVKGKVGELLKKVD---ERGKFDEVVERLGLENVLDRD-VSELSGGELQRV----AIAA 226 (591)
T ss_pred HHcCCcce-ecchHHHHHHHHHhcchHHHHHHhhh---hcCcHHHHHHHhcchhhhhhh-hhhcCchHHHHH----HHHH
Confidence 00000000 000 0000000 001112221111 112234455678888887555 999999999999 9998
Q ss_pred ceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhhh-hhhhcCCcEEEEe
Q psy16304 347 ARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLI 411 (537)
Q Consensus 347 all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g 411 (537)
+++. + .++-++| ++.++-. ....+.+.+. +..++|+ .||+..++.+. .+-+--|.+-++|
T Consensus 227 ~l~r-d--ADvY~FDEpsSyLDi~qRl~~ar~Irel~~~-~k~ViVV-EHDLavLD~lsD~vhI~YG~pg~YG 294 (591)
T COG1245 227 ALLR-D--ADVYFFDEPSSYLDIRQRLNAARVIRELAED-GKYVIVV-EHDLAVLDYLSDFVHILYGEPGVYG 294 (591)
T ss_pred HHhc-c--CCEEEEcCCcccccHHHHHHHHHHHHHHhcc-CCeEEEE-echHHHHHHhhheeEEEecCCccce
Confidence 8886 4 6899999 7777322 2233555544 4577888 89999888766 3333344444443
No 401
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.01 E-value=8.9e-10 Score=103.08 Aligned_cols=89 Identities=34% Similarity=0.690 Sum_probs=72.9
Q ss_pred eEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccc
Q psy16304 198 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRT 277 (537)
Q Consensus 198 ~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~ 277 (537)
+++++|++|||||||++.+++.....+.||.|++...+.+.+ ..+.+||++|+..++..|..++.. ++
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~~~~~~~~-~~~~i~D~~G~~~~~~~~~~~~~~-----------a~ 68 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPTKLRLDK-YEVCIFDLGGGANFRGIWVNYYAE-----------AH 68 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccCcccceEEEEEECC-EEEEEEECCCcHHHHHHHHHHHcC-----------CC
Confidence 479999999999999999998733567899998888888875 999999999999888888887766 89
Q ss_pred eeeEEee-cCcccccCCccccc
Q psy16304 278 CQVYLIM-CGVHQVSGIPDELT 298 (537)
Q Consensus 278 ~il~v~D-s~~~~~~~l~~~l~ 298 (537)
++++++| ++...+.++..++.
T Consensus 69 ~ii~V~D~s~~~s~~~~~~~l~ 90 (167)
T cd04161 69 GLVFVVDSSDDDRVQEVKEILR 90 (167)
T ss_pred EEEEEEECCchhHHHHHHHHHH
Confidence 9999999 66555555444443
No 402
>KOG0080|consensus
Probab=99.00 E-value=6.2e-10 Score=101.20 Aligned_cols=97 Identities=22% Similarity=0.352 Sum_probs=80.5
Q ss_pred CCeEEEEeCCCCcHHHHHHHHhCCCCccccC-cee--eeeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304 196 SVPILVLGLDNAGKSSIIKRILGEPIISLVP-TVG--FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG 271 (537)
Q Consensus 196 G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~P-t~G--~t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l 271 (537)
-.++.|+|.+|+|||+|+..+....|-...| |.| |....+.++| ..++.+||++|++++|.+...++..
T Consensus 11 t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRg------- 83 (209)
T KOG0080|consen 11 TFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRG------- 83 (209)
T ss_pred eEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhcc-------
Confidence 3679999999999999999999887744444 588 6677888887 5789999999999999999998888
Q ss_pred CCCccceeeEEee-cCcccccCCcccccccCcC
Q psy16304 272 RPDSRTCQVYLIM-CGVHQVSGIPDELTSATHL 303 (537)
Q Consensus 272 ~~~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l 303 (537)
+.++++|+| +.++.+..+..|+..++.+
T Consensus 84 ----aqGiIlVYDVT~Rdtf~kLd~W~~Eld~Y 112 (209)
T KOG0080|consen 84 ----AQGIILVYDVTSRDTFVKLDIWLKELDLY 112 (209)
T ss_pred ----CceeEEEEEccchhhHHhHHHHHHHHHhh
Confidence 999999999 8888877776655555443
No 403
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=98.99 E-value=1.1e-09 Score=102.69 Aligned_cols=89 Identities=28% Similarity=0.616 Sum_probs=72.1
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCC
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPD 274 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~ 274 (537)
+..+++++|+.|||||||++.+.+..+..+.||.|++...+...+ +.+.+||++|+++++..+..++..
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~~~~~~~~-~~~~l~Dt~G~~~~~~~~~~~~~~---------- 76 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKN-VKFNVWDVGGQDKIRPLWRHYYTG---------- 76 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCccccCCcccceEEEEECC-EEEEEEECCCCHHHHHHHHHHhcc----------
Confidence 457899999999999999999987767667899997777777654 999999999999888777776665
Q ss_pred ccceeeEEee-cCcccccCCcc
Q psy16304 275 SRTCQVYLIM-CGVHQVSGIPD 295 (537)
Q Consensus 275 ~~~~il~v~D-s~~~~~~~l~~ 295 (537)
++++++++| ++...+.++..
T Consensus 77 -a~~ii~v~D~t~~~s~~~~~~ 97 (168)
T cd04149 77 -TQGLIFVVDSADRDRIDEARQ 97 (168)
T ss_pred -CCEEEEEEeCCchhhHHHHHH
Confidence 899999999 65554444433
No 404
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=98.99 E-value=9.9e-10 Score=106.54 Aligned_cols=106 Identities=19% Similarity=0.376 Sum_probs=80.6
Q ss_pred eEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee--eeeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304 198 PILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP 273 (537)
Q Consensus 198 ~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G--~t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~ 273 (537)
-++++|..|+|||||++.+....| ..+.||.| +....+.++| .+.+.+||++|+++++.++..++..
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~--------- 72 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRS--------- 72 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcC---------
Confidence 378999999999999999998777 45677876 4456677776 4888999999999999888888776
Q ss_pred CccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEEec
Q psy16304 274 DSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVLG 317 (537)
Q Consensus 274 ~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llG 317 (537)
++++++|+| ++.+.++++..++..+... ......+.++|
T Consensus 73 --ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~---~~~~~piilVg 112 (202)
T cd04120 73 --AKGIILVYDITKKETFDDLPKWMKMIDKY---ASEDAELLLVG 112 (202)
T ss_pred --CCEEEEEEECcCHHHHHHHHHHHHHHHHh---CCCCCcEEEEE
Confidence 999999999 8877777776655433221 12234555664
No 405
>PLN00223 ADP-ribosylation factor; Provisional
Probab=98.99 E-value=1.3e-09 Score=103.65 Aligned_cols=89 Identities=30% Similarity=0.657 Sum_probs=73.8
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCC
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPD 274 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~ 274 (537)
+..+++++|+.|||||||++.+....+..+.||.|++...+...+ +.+.+||++|++.++.+|..++..
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~~~~~~~~~-~~~~i~D~~Gq~~~~~~~~~~~~~---------- 84 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN-ISFTVWDVGGQDKIRPLWRHYFQN---------- 84 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCccccCCcceeEEEEEECC-EEEEEEECCCCHHHHHHHHHHhcc----------
Confidence 346899999999999999999987667667899998777777765 999999999999998888887776
Q ss_pred ccceeeEEee-cCcccccCCcc
Q psy16304 275 SRTCQVYLIM-CGVHQVSGIPD 295 (537)
Q Consensus 275 ~~~~il~v~D-s~~~~~~~l~~ 295 (537)
++++++|+| ++.+++..+..
T Consensus 85 -a~~iI~V~D~s~~~s~~~~~~ 105 (181)
T PLN00223 85 -TQGLIFVVDSNDRDRVVEARD 105 (181)
T ss_pred -CCEEEEEEeCCcHHHHHHHHH
Confidence 899999999 66655544433
No 406
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=98.99 E-value=1.1e-09 Score=100.69 Aligned_cols=81 Identities=33% Similarity=0.629 Sum_probs=65.9
Q ss_pred eEEEEeCCCCcHHHHHHHHhCCCC--ccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCc
Q psy16304 198 PILVLGLDNAGKSSIIKRILGEPI--ISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDS 275 (537)
Q Consensus 198 ~vgLVG~NGAGKSTLL~~L~G~~~--~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~ 275 (537)
.|+++|++|||||||++.+++..+ ..+.||.|++...+... +..+.+||++|+.+++..+..++..
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~----------- 68 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESFEKG-NLSFTAFDMSGQGKYRGLWEHYYKN----------- 68 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEEEEC-CEEEEEEECCCCHhhHHHHHHHHcc-----------
Confidence 378999999999999999998743 56789999777666655 4899999999999888887776655
Q ss_pred cceeeEEee-cCcccc
Q psy16304 276 RTCQVYLIM-CGVHQV 290 (537)
Q Consensus 276 ~~~il~v~D-s~~~~~ 290 (537)
++++++++| ++...+
T Consensus 69 ~d~ii~v~D~~~~~~~ 84 (162)
T cd04157 69 IQGIIFVIDSSDRLRL 84 (162)
T ss_pred CCEEEEEEeCCcHHHH
Confidence 899999999 554433
No 407
>KOG0078|consensus
Probab=98.98 E-value=1.3e-09 Score=103.92 Aligned_cols=109 Identities=20% Similarity=0.353 Sum_probs=91.8
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee--eeeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCC
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL 270 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G--~t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~ 270 (537)
...++.++|.+|+|||+++-++....| ..+..|.| |...++.++| .+.+++||++|+++++.+...|+..
T Consensus 11 ~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrg------ 84 (207)
T KOG0078|consen 11 YLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRG------ 84 (207)
T ss_pred eEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhh------
Confidence 568899999999999999999999887 55678888 7778888887 5788999999999999999999888
Q ss_pred CCCCccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEEec
Q psy16304 271 GRPDSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVLG 317 (537)
Q Consensus 271 l~~~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llG 317 (537)
+.++++|+| ++...++++..|+..++.. +.....+.++|
T Consensus 85 -----A~gi~LvyDitne~Sfeni~~W~~~I~e~---a~~~v~~~LvG 124 (207)
T KOG0078|consen 85 -----AMGILLVYDITNEKSFENIRNWIKNIDEH---ASDDVVKILVG 124 (207)
T ss_pred -----cCeeEEEEEccchHHHHHHHHHHHHHHhh---CCCCCcEEEee
Confidence 999999999 8888888888876666443 33456677776
No 408
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=98.98 E-value=1.4e-09 Score=102.04 Aligned_cols=87 Identities=34% Similarity=0.767 Sum_probs=71.6
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCC
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPD 274 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~ 274 (537)
...+++++|++|||||||++.+.+..+..+.||.|+....+.+++ ..+.+||++|++.++..+..++..
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~~~~~~~~-~~l~l~D~~G~~~~~~~~~~~~~~---------- 81 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQIKTLEYEG-YKLNIWDVGGQKTLRPYWRNYFES---------- 81 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECC-EEEEEEECCCCHHHHHHHHHHhCC----------
Confidence 346799999999999999999999877778899998888888875 999999999998887777766655
Q ss_pred ccceeeEEee-cCcccccCC
Q psy16304 275 SRTCQVYLIM-CGVHQVSGI 293 (537)
Q Consensus 275 ~~~~il~v~D-s~~~~~~~l 293 (537)
++++++++| ++..++.+.
T Consensus 82 -~d~~i~v~d~~~~~s~~~~ 100 (173)
T cd04154 82 -TDALIWVVDSSDRLRLDDC 100 (173)
T ss_pred -CCEEEEEEECCCHHHHHHH
Confidence 899999999 555444433
No 409
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=98.98 E-value=1.3e-09 Score=103.75 Aligned_cols=88 Identities=28% Similarity=0.666 Sum_probs=72.2
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCC
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPD 274 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~ 274 (537)
++.+++|+|++|+|||||++.+....+..+.||.|++...+...+ +.+.+||++|++.++..+..++..
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~~~~~~~~~-~~~~l~D~~G~~~~~~~~~~~~~~---------- 84 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKN-LKFTMWDVGGQDKLRPLWRHYYQN---------- 84 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccccCCccccceEEEEECC-EEEEEEECCCCHhHHHHHHHHhcC----------
Confidence 467899999999999999999976666557799997777777765 999999999999888888777766
Q ss_pred ccceeeEEee-cCcccccCCc
Q psy16304 275 SRTCQVYLIM-CGVHQVSGIP 294 (537)
Q Consensus 275 ~~~~il~v~D-s~~~~~~~l~ 294 (537)
++++++++| ++.+.+....
T Consensus 85 -ad~iI~v~D~t~~~s~~~~~ 104 (182)
T PTZ00133 85 -TNGLIFVVDSNDRERIGDAR 104 (182)
T ss_pred -CCEEEEEEeCCCHHHHHHHH
Confidence 899999999 6655544443
No 410
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=98.97 E-value=1.4e-09 Score=103.52 Aligned_cols=88 Identities=28% Similarity=0.506 Sum_probs=72.7
Q ss_pred CCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304 194 FRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP 273 (537)
Q Consensus 194 ~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~ 273 (537)
.+..+++++|++|||||||++.+.+..+..+.||.|.+...+.+++ ..+.+||++|+...+..|..++..
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~D~~G~~~~~~~~~~~~~~--------- 84 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSEELAIGN-IKFTTFDLGGHQQARRLWKDYFPE--------- 84 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccceEEEEECC-EEEEEEECCCCHHHHHHHHHHhCC---------
Confidence 3568899999999999999999999877667788887777777775 999999999998888888877766
Q ss_pred CccceeeEEee-cCcccccCC
Q psy16304 274 DSRTCQVYLIM-CGVHQVSGI 293 (537)
Q Consensus 274 ~~~~~il~v~D-s~~~~~~~l 293 (537)
++++++++| ++.+++...
T Consensus 85 --ad~ii~vvD~~~~~~~~~~ 103 (184)
T smart00178 85 --VNGIVYLVDAYDKERFAES 103 (184)
T ss_pred --CCEEEEEEECCcHHHHHHH
Confidence 899999999 555444333
No 411
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.96 E-value=1.8e-09 Score=105.15 Aligned_cols=89 Identities=18% Similarity=0.393 Sum_probs=62.9
Q ss_pred CCCeEEEEeCCCCcHHHHHH-HHhCCCCccccCceeeeeEEEEE--C-CcEEEEEeecCCCchhhHHHHhhhhccccCCC
Q psy16304 195 RSVPILVLGLDNAGKSSIIK-RILGEPIISLVPTVGFNRARVEY--G-NKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL 270 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~-~L~G~~~~~~~Pt~G~t~~~i~i--~-g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~ 270 (537)
...+++|+|++|||||||++ .+.|.....+.||.|.....+.+ + +.+.+.+||++|+..++..+..++..
T Consensus 8 ~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~------ 81 (215)
T PTZ00132 8 PEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIK------ 81 (215)
T ss_pred CCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhcc------
Confidence 34689999999999999995 56665335577888865555443 3 36899999999988776555444333
Q ss_pred CCCCccceeeEEee-cCcccccCCc
Q psy16304 271 GRPDSRTCQVYLIM-CGVHQVSGIP 294 (537)
Q Consensus 271 l~~~~~~~il~v~D-s~~~~~~~l~ 294 (537)
.+++++++| ++...+..+.
T Consensus 82 -----~~~~i~v~d~~~~~s~~~~~ 101 (215)
T PTZ00132 82 -----GQCAIIMFDVTSRITYKNVP 101 (215)
T ss_pred -----CCEEEEEEECcCHHHHHHHH
Confidence 678889999 5554444333
No 412
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=98.96 E-value=1.4e-09 Score=101.45 Aligned_cols=85 Identities=33% Similarity=0.586 Sum_probs=68.5
Q ss_pred EEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccc
Q psy16304 199 ILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRT 277 (537)
Q Consensus 199 vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~ 277 (537)
++++|+.|+|||||++.+.+..+ ..+.||.|+....+... +..+.+||++|+.+++..+..++.. ++
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~~~i~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~-----------ad 69 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQ-DAIMELLEIGGSQNLRKYWKRYLSG-----------SQ 69 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcceEEEeeC-CeEEEEEECCCCcchhHHHHHHHhh-----------CC
Confidence 68999999999999999998766 56789999765555544 4899999999999888888877776 89
Q ss_pred eeeEEee-cCcccccCCcc
Q psy16304 278 CQVYLIM-CGVHQVSGIPD 295 (537)
Q Consensus 278 ~il~v~D-s~~~~~~~l~~ 295 (537)
++++++| ++...+.....
T Consensus 70 ~ii~V~D~t~~~s~~~~~~ 88 (164)
T cd04162 70 GLIFVVDSADSERLPLARQ 88 (164)
T ss_pred EEEEEEECCCHHHHHHHHH
Confidence 9999999 66554444443
No 413
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=98.96 E-value=1.8e-09 Score=105.41 Aligned_cols=92 Identities=21% Similarity=0.293 Sum_probs=72.6
Q ss_pred eEEEEeCCCCcHHHHHHHHhCCCC-ccccCceee--eeEEEEECC--cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304 198 PILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGF--NRARVEYGN--KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR 272 (537)
Q Consensus 198 ~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~--t~~~i~i~g--~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~ 272 (537)
+++++|++|||||||++.+.+..+ ..+.||.|. ....+.+++ .+.+.+||++|++.+..++..++..
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~-------- 73 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYG-------- 73 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhc--------
Confidence 689999999999999999998877 557899883 345666654 4789999999998877777777665
Q ss_pred CCccceeeEEee-cCcccccCCccccccc
Q psy16304 273 PDSRTCQVYLIM-CGVHQVSGIPDELTSA 300 (537)
Q Consensus 273 ~~~~~~il~v~D-s~~~~~~~l~~~l~~~ 300 (537)
++++++++| ++.+.++++..++..+
T Consensus 74 ---ad~iilV~D~t~~~s~~~~~~w~~~l 99 (215)
T cd04109 74 ---AHAVFLVYDVTNSQSFENLEDWYSMV 99 (215)
T ss_pred ---CCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 999999999 7766666665554444
No 414
>KOG0092|consensus
Probab=98.95 E-value=6e-10 Score=104.49 Aligned_cols=109 Identities=17% Similarity=0.319 Sum_probs=87.5
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCCcc-ccCcee--eeeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCC
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPIIS-LVPTVG--FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL 270 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~-~~Pt~G--~t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~ 270 (537)
...+++|+|..|+|||||+-.+.-..|.. ..||.| |..+++.+++ .+++.+|||+|+++++.+.+.|+..
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRg------ 77 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRG------ 77 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecC------
Confidence 34789999999999999999998888854 579999 7788888875 5788899999999999888888887
Q ss_pred CCCCccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEEec
Q psy16304 271 GRPDSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVLG 317 (537)
Q Consensus 271 l~~~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llG 317 (537)
+++.++++| ++.+.+..+..|+..+. .....+..+.++|
T Consensus 78 -----A~AAivvYDit~~~SF~~aK~WvkeL~---~~~~~~~vialvG 117 (200)
T KOG0092|consen 78 -----ANAAIVVYDITDEESFEKAKNWVKELQ---RQASPNIVIALVG 117 (200)
T ss_pred -----CcEEEEEEecccHHHHHHHHHHHHHHH---hhCCCCeEEEEec
Confidence 999999999 88888777777655443 3333455666776
No 415
>KOG0098|consensus
Probab=98.95 E-value=1.6e-09 Score=101.02 Aligned_cols=108 Identities=18% Similarity=0.307 Sum_probs=88.4
Q ss_pred CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee--eeeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304 196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG 271 (537)
Q Consensus 196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G--~t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l 271 (537)
-.++.++|..|+|||+||..++..+| +.+..|.| |-...+.+++ .+++++||++|++.++.+.+.++..
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~------- 78 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRG------- 78 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhcc-------
Confidence 47899999999999999999999998 67778999 4456777776 6899999999999999999999988
Q ss_pred CCCccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEEec
Q psy16304 272 RPDSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVLG 317 (537)
Q Consensus 272 ~~~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llG 317 (537)
+.+.++|+| +.++.+..+..||..+.. .......+.++|
T Consensus 79 ----a~GalLVydit~r~sF~hL~~wL~D~rq---~~~~NmvImLiG 118 (216)
T KOG0098|consen 79 ----AAGALLVYDITRRESFNHLTSWLEDARQ---HSNENMVIMLIG 118 (216)
T ss_pred ----CcceEEEEEccchhhHHHHHHHHHHHHH---hcCCCcEEEEEc
Confidence 999999999 888888887776654432 223445566665
No 416
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=98.95 E-value=1.9e-09 Score=100.85 Aligned_cols=88 Identities=33% Similarity=0.663 Sum_probs=70.7
Q ss_pred eEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccc
Q psy16304 198 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRT 277 (537)
Q Consensus 198 ~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~ 277 (537)
+++++|+.|||||||++.+.+..+..+.||.|+....+.+.+ ..+.+||++|+..++..+..++.. ++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~~~~T~~~~~~~~~~~~-~~i~l~Dt~G~~~~~~~~~~~~~~-----------ad 68 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKN-LKFTIWDVGGKHKLRPLWKHYYLN-----------TQ 68 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCCcCCcCceeEEEEEECC-EEEEEEECCCChhcchHHHHHhcc-----------CC
Confidence 478999999999999999999877667899986666676665 999999999998887777776655 89
Q ss_pred eeeEEee-cCcccccCCcccc
Q psy16304 278 CQVYLIM-CGVHQVSGIPDEL 297 (537)
Q Consensus 278 ~il~v~D-s~~~~~~~l~~~l 297 (537)
++++++| ++...+.++..++
T Consensus 69 ~ii~V~D~s~~~s~~~~~~~~ 89 (169)
T cd04158 69 AVVFVVDSSHRDRVSEAHSEL 89 (169)
T ss_pred EEEEEEeCCcHHHHHHHHHHH
Confidence 9999999 6665555444433
No 417
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.95 E-value=2.1e-09 Score=103.61 Aligned_cols=90 Identities=22% Similarity=0.319 Sum_probs=71.2
Q ss_pred eEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee--eEEEEEC-C-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304 198 PILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN--RARVEYG-N-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR 272 (537)
Q Consensus 198 ~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t--~~~i~i~-g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~ 272 (537)
+++++|++|||||||++.+.+..+ ..+.||.|.. ...+.++ + .+.+.+||++|++.++.+++.++..
T Consensus 2 KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~-------- 73 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRG-------- 73 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCC--------
Confidence 689999999999999999998776 4578998843 4456665 3 5789999999999888777777666
Q ss_pred CCccceeeEEee-cCcccccCCccccc
Q psy16304 273 PDSRTCQVYLIM-CGVHQVSGIPDELT 298 (537)
Q Consensus 273 ~~~~~~il~v~D-s~~~~~~~l~~~l~ 298 (537)
++++++++| ++.+.++.+..++.
T Consensus 74 ---a~~~ilv~D~t~~~s~~~~~~~~~ 97 (201)
T cd04107 74 ---AVGAIIVFDVTRPSTFEAVLKWKA 97 (201)
T ss_pred ---CCEEEEEEECCCHHHHHHHHHHHH
Confidence 899999999 77766666554443
No 418
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=98.94 E-value=1.7e-09 Score=100.32 Aligned_cols=86 Identities=29% Similarity=0.659 Sum_probs=69.9
Q ss_pred eEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccc
Q psy16304 198 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRT 277 (537)
Q Consensus 198 ~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~ 277 (537)
+++++|..|+|||||++.+....+..+.||.|+....+.... +.+.+||++|+.+++..+..++.. ++
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~~~~~pt~g~~~~~~~~~~-~~~~l~D~~G~~~~~~~~~~~~~~-----------ad 69 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN-ISFTVWDVGGQDKIRPLWRHYFQN-----------TQ 69 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECC-EEEEEEECCCCHhHHHHHHHHhcC-----------CC
Confidence 689999999999999999976666567899997776677664 999999999998888888777666 89
Q ss_pred eeeEEee-cCcccccCCcc
Q psy16304 278 CQVYLIM-CGVHQVSGIPD 295 (537)
Q Consensus 278 ~il~v~D-s~~~~~~~l~~ 295 (537)
++++++| ++..++.++.+
T Consensus 70 ~~i~v~D~~~~~s~~~~~~ 88 (159)
T cd04150 70 GLIFVVDSNDRERIGEARE 88 (159)
T ss_pred EEEEEEeCCCHHHHHHHHH
Confidence 9999999 55554444433
No 419
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=98.94 E-value=2.3e-09 Score=101.88 Aligned_cols=84 Identities=31% Similarity=0.574 Sum_probs=67.8
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCC
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPD 274 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~ 274 (537)
+..+++|+|++|||||||++.+.+..+..+.||.|.+...+.+++ ..+.+||++|+..++..|..++..
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~~~i~~~~-~~~~l~D~~G~~~~~~~~~~~~~~---------- 86 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGN-IKFKTFDLGGHEQARRLWKDYFPE---------- 86 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcceEEEEECC-EEEEEEECCCCHHHHHHHHHHhcc----------
Confidence 356789999999999999999999766556677776666888886 999999999998877777666555
Q ss_pred ccceeeEEee-cCcccc
Q psy16304 275 SRTCQVYLIM-CGVHQV 290 (537)
Q Consensus 275 ~~~~il~v~D-s~~~~~ 290 (537)
++++++++| ++..++
T Consensus 87 -ad~iilV~D~~~~~s~ 102 (190)
T cd00879 87 -VDGIVFLVDAADPERF 102 (190)
T ss_pred -CCEEEEEEECCcHHHH
Confidence 788999999 554443
No 420
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.94 E-value=4.1e-09 Score=98.33 Aligned_cols=81 Identities=36% Similarity=0.747 Sum_probs=67.2
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCC
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPD 274 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~ 274 (537)
+..+++|+|++|||||||++.|.|..+..+.|+.|++...+.+.+ ..+.+||++|+..+...+..++..
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~~~-~~~~~~D~~G~~~~~~~~~~~~~~---------- 81 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQSDG-FKLNVWDIGGQRAIRPYWRNYFEN---------- 81 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECC-EEEEEEECCCCHHHHHHHHHHhcC----------
Confidence 357799999999999999999999877667899998888888886 999999999987776555555443
Q ss_pred ccceeeEEee-cCc
Q psy16304 275 SRTCQVYLIM-CGV 287 (537)
Q Consensus 275 ~~~~il~v~D-s~~ 287 (537)
++++++++| ++.
T Consensus 82 -~~~ii~v~D~~~~ 94 (173)
T cd04155 82 -TDCLIYVIDSADK 94 (173)
T ss_pred -CCEEEEEEeCCCH
Confidence 788899999 443
No 421
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=98.92 E-value=3e-09 Score=100.39 Aligned_cols=90 Identities=28% Similarity=0.622 Sum_probs=72.1
Q ss_pred CCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCc
Q psy16304 196 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDS 275 (537)
Q Consensus 196 G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~ 275 (537)
-.+++++|++|+|||||++.+....+..+.||.|+....+.+.+ ..+.+||++|+..++..|..++..
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~l~l~D~~G~~~~~~~~~~~~~~----------- 80 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVETVTYKN-ISFTVWDVGGQDKIRPLWRHYYTN----------- 80 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCcCCccccceEEEEECC-EEEEEEECCCChhhHHHHHHHhCC-----------
Confidence 47899999999999999999975556557799997766677664 999999999999888888887766
Q ss_pred cceeeEEee-cCcccccCCcccc
Q psy16304 276 RTCQVYLIM-CGVHQVSGIPDEL 297 (537)
Q Consensus 276 ~~~il~v~D-s~~~~~~~l~~~l 297 (537)
++++++++| ++.+.+++..+++
T Consensus 81 ad~ii~v~D~t~~~s~~~~~~~l 103 (175)
T smart00177 81 TQGLIFVVDSNDRDRIDEAREEL 103 (175)
T ss_pred CCEEEEEEECCCHHHHHHHHHHH
Confidence 899999999 6665554444433
No 422
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=98.92 E-value=2.2e-09 Score=98.80 Aligned_cols=83 Identities=33% Similarity=0.679 Sum_probs=68.1
Q ss_pred eEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccc
Q psy16304 198 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRT 277 (537)
Q Consensus 198 ~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~ 277 (537)
+++++|++|+|||||++.+.+..+....||.|++...+.+.+...+.+||++|+..++..+..++.. ++
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~-----------~~ 69 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLEN-----------TD 69 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhcc-----------CC
Confidence 4799999999999999999998876667999987777777666899999999998877777666655 88
Q ss_pred eeeEEee-cCccccc
Q psy16304 278 CQVYLIM-CGVHQVS 291 (537)
Q Consensus 278 ~il~v~D-s~~~~~~ 291 (537)
++++++| ++...+.
T Consensus 70 ~iv~v~D~~~~~~~~ 84 (160)
T cd04156 70 GLVYVVDSSDEARLD 84 (160)
T ss_pred EEEEEEECCcHHHHH
Confidence 9999999 5544333
No 423
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=98.92 E-value=4.7e-09 Score=95.20 Aligned_cols=78 Identities=35% Similarity=0.692 Sum_probs=64.7
Q ss_pred EEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccc
Q psy16304 199 ILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRT 277 (537)
Q Consensus 199 vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~ 277 (537)
++|+|++|||||||++.|.+.++ ..+.|+.|+....+..++ +.+.+||++|+..++..+..++.. ++
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~~~~~~~~~~~~-----------~d 69 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVTKGN-VTLKVWDLGGQPRFRSMWERYCRG-----------VN 69 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEEEECC-EEEEEEECCCCHhHHHHHHHHHhc-----------CC
Confidence 79999999999999999999877 556788887766777665 899999999998888777766655 88
Q ss_pred eeeEEee-cCcc
Q psy16304 278 CQVYLIM-CGVH 288 (537)
Q Consensus 278 ~il~v~D-s~~~ 288 (537)
++++++| ++..
T Consensus 70 ~ii~v~d~~~~~ 81 (159)
T cd04159 70 AIVYVVDAADRT 81 (159)
T ss_pred EEEEEEECCCHH
Confidence 8999999 4443
No 424
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.91 E-value=3.7e-10 Score=107.40 Aligned_cols=208 Identities=13% Similarity=0.080 Sum_probs=125.9
Q ss_pred ccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhh
Q psy16304 183 VLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYL 262 (537)
Q Consensus 183 ~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i 262 (537)
+.+++.++++.+.|++-||||.+|+|||-+-+.|+|. ....=-+|.+...+++ +++ +.... .+.|.+..+.+
T Consensus 20 vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v----~kdnW~vTADR~Rf~~-idL--L~L~P-r~RRk~ig~~i 91 (330)
T COG4170 20 VKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGV----NKDNWRVTADRMRFDD-IDL--LRLSP-RERRKLVGHNV 91 (330)
T ss_pred eEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcc----cccceEEEhhhccccc-chh--hcCCh-HHhhhhhccch
Confidence 4567778889999999999999999999999999997 4333224444566554 332 22221 24456677788
Q ss_pred hccccCCCCCCCccceeeEEeecCcc----cccCCcccc---cccCcCCc-cccCCccEEEeccCccC--ccchhhhhcC
Q psy16304 263 GTVSQTPLGRPDSRTCQVYLIMCGVH----QVSGIPDEL---TSATHLPL-VDFRSVPILVLGLDNAG--KSSIIKRILG 332 (537)
Q Consensus 263 ~~v~Q~~~l~~~~~~~il~v~Ds~~~----~~~~l~~~l---~~~~~l~~-~~~~~~~L~llGl~~~g--Ks~li~~LSg 332 (537)
+++||++. .+.|.++. ..+++..+- .|...+.- ..++-..+-.+|+.+.. ..+++++|..
T Consensus 92 sMIFQeP~----------sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTe 161 (330)
T COG4170 92 SMIFQEPQ----------SCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTE 161 (330)
T ss_pred hhhhcCch----------hhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhcc
Confidence 99999986 12331111 111111110 01000000 01112223356664432 3566889999
Q ss_pred CCceeeecccccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhc
Q psy16304 333 EPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMS 403 (537)
Q Consensus 333 G~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~ 403 (537)
|+-|+| .+|.|+.. . |.+++-| |+.++.. ..++....+..+++|+++ +||..+...-+ +-++.
T Consensus 162 GE~QKV----MIA~A~An-q--PrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~-s~Dl~~is~W~d~i~VlY 233 (330)
T COG4170 162 GECQKV----MIAIALAN-Q--PRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLI-SHDLQMISQWADKINVLY 233 (330)
T ss_pred Ccceee----eeehhhcc-C--CceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEE-cccHHHHHHHhhheEEEE
Confidence 999999 77777775 3 8999999 7777433 233345555566778888 99988776533 66676
Q ss_pred CCcEEEEecccch
Q psy16304 404 CNCQVYLISAKNL 416 (537)
Q Consensus 404 ~G~ii~~g~nkdl 416 (537)
-|.-+..+...++
T Consensus 234 CGQ~~ESa~~e~l 246 (330)
T COG4170 234 CGQTVESAPSEEL 246 (330)
T ss_pred ecccccccchhHH
Confidence 6665555544454
No 425
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=98.91 E-value=3e-09 Score=97.88 Aligned_cols=93 Identities=18% Similarity=0.277 Sum_probs=69.4
Q ss_pred CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee-eeeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304 197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG-FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP 273 (537)
Q Consensus 197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G-~t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~ 273 (537)
.+++++|++|||||||++.+.+..+ ..+.||.+ +....+.+++ ...+.+||++|+++++.++..++..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~--------- 72 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKN--------- 72 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhc---------
Confidence 4799999999999999999998766 44567776 3345566665 4677899999999888777776665
Q ss_pred CccceeeEEee-cCcccccCCccccccc
Q psy16304 274 DSRTCQVYLIM-CGVHQVSGIPDELTSA 300 (537)
Q Consensus 274 ~~~~~il~v~D-s~~~~~~~l~~~l~~~ 300 (537)
++++++++| ++...++.+..++..+
T Consensus 73 --~~~~ilv~d~~~~~s~~~~~~~~~~i 98 (163)
T cd04136 73 --GQGFVLVYSITSQSSFNDLQDLREQI 98 (163)
T ss_pred --CCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 889999999 6665555554444333
No 426
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=98.90 E-value=3.9e-09 Score=101.28 Aligned_cols=107 Identities=17% Similarity=0.309 Sum_probs=80.6
Q ss_pred CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee--eeeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304 196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG 271 (537)
Q Consensus 196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G--~t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l 271 (537)
-.+|+++|..|+|||||++.+.+..+ ..+.|+.| +....+.+++ .+.+.+||++|+++++.++..++..
T Consensus 6 ~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~------- 78 (189)
T cd04121 6 LLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRG------- 78 (189)
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcC-------
Confidence 36899999999999999999998766 44556776 3345566665 4788999999999988877776665
Q ss_pred CCCccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEEec
Q psy16304 272 RPDSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVLG 317 (537)
Q Consensus 272 ~~~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llG 317 (537)
++++++++| ++...++++..++..+... ....++.++|
T Consensus 79 ----ad~illVfD~t~~~Sf~~~~~w~~~i~~~----~~~~piilVG 117 (189)
T cd04121 79 ----AQGIILVYDITNRWSFDGIDRWIKEIDEH----APGVPKILVG 117 (189)
T ss_pred ----CCEEEEEEECcCHHHHHHHHHHHHHHHHh----CCCCCEEEEE
Confidence 999999999 7888887777665554321 1245666776
No 427
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=98.90 E-value=3.5e-09 Score=98.48 Aligned_cols=91 Identities=18% Similarity=0.291 Sum_probs=70.4
Q ss_pred CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee--EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304 197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR--ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR 272 (537)
Q Consensus 197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~--~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~ 272 (537)
.+++++|+.|+|||||++.+.+..+ ..+.||.|... ..+.+++ .+++.+||++|++.++..+..++..
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~-------- 74 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRG-------- 74 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcC--------
Confidence 4799999999999999999998876 45667877433 3455665 4688999999999888777766665
Q ss_pred CCccceeeEEee-cCcccccCCccccc
Q psy16304 273 PDSRTCQVYLIM-CGVHQVSGIPDELT 298 (537)
Q Consensus 273 ~~~~~~il~v~D-s~~~~~~~l~~~l~ 298 (537)
++++++++| ++.+.++.+..++.
T Consensus 75 ---~~~~ilv~d~~~~~s~~~~~~~~~ 98 (166)
T cd04122 75 ---AAGALMVYDITRRSTYNHLSSWLT 98 (166)
T ss_pred ---CCEEEEEEECCCHHHHHHHHHHHH
Confidence 899999999 76666666555543
No 428
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.90 E-value=2.7e-09 Score=101.94 Aligned_cols=91 Identities=14% Similarity=0.212 Sum_probs=68.6
Q ss_pred eEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee-eEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCCCC
Q psy16304 198 PILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN-RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPD 274 (537)
Q Consensus 198 ~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t-~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~ 274 (537)
+++++|.+|||||||++.+.+..+ ..+.||.|.. +..+.+++ .+.+.+||++|+++++..+..++..
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~---------- 70 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIRE---------- 70 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHh----------
Confidence 489999999999999999998766 4466777722 33455655 3568899999999888877777776
Q ss_pred ccceeeEEee-cCcccccCCcccccc
Q psy16304 275 SRTCQVYLIM-CGVHQVSGIPDELTS 299 (537)
Q Consensus 275 ~~~~il~v~D-s~~~~~~~l~~~l~~ 299 (537)
++++++++| ++...++.+..++..
T Consensus 71 -ad~~ilv~d~~~~~s~~~~~~~~~~ 95 (190)
T cd04144 71 -GEGFILVYSITSRSTFERVERFREQ 95 (190)
T ss_pred -CCEEEEEEECCCHHHHHHHHHHHHH
Confidence 899999999 666555555544433
No 429
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.88 E-value=9.8e-10 Score=127.53 Aligned_cols=96 Identities=10% Similarity=0.139 Sum_probs=66.3
Q ss_pred EEEeccCccCccchhhhhcCCCceeeecccccccceeccCCce---EEEEEe--cCchh--hHHHHH---HHHHhcCCEE
Q psy16304 313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKY---EVFLYD--LGGSE--DFRTIW---KQYLGTVSQT 382 (537)
Q Consensus 313 L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p---~lllLD--T~Gl~--~~~~l~---~~~~~~~~~v 382 (537)
+..+|+........+.+|||||+||+ .++++++. + | ++++|| |+|++ ....++ ..+.+. +.+
T Consensus 814 L~~vgL~~l~l~~~~~tLSgGEkQRl----~LAraL~~-~--p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~-G~T 885 (943)
T PRK00349 814 LVDVGLGYIKLGQPATTLSGGEAQRV----KLAKELSK-R--STGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDK-GNT 885 (943)
T ss_pred HHHCCCCcccccCCcccCCHHHHHHH----HHHHHHhc-C--CCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCE
Confidence 34566654222344789999999999 99999986 3 5 899999 99992 223333 343333 345
Q ss_pred EEEEeCCCcchhhhhh-hhhh------cCCcEEEEecccchh
Q psy16304 383 LLVSHSLSGRPDDRCQ-VYLM------SCNCQVYLISAKNLS 417 (537)
Q Consensus 383 IlVvdshd~~~~~~~~-i~ll------~~G~ii~~g~nkdl~ 417 (537)
++++ +|+......++ ++.+ ++|+++..|++.++.
T Consensus 886 VIii-tH~~~~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~ 926 (943)
T PRK00349 886 VVVI-EHNLDVIKTADWIIDLGPEGGDGGGEIVATGTPEEVA 926 (943)
T ss_pred EEEE-ecCHHHHHhCCEEEEecCCcCCCCCEEEEeCCHHHHH
Confidence 6666 78877766555 7777 689999988887764
No 430
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=98.88 E-value=5.7e-09 Score=96.79 Aligned_cols=93 Identities=20% Similarity=0.348 Sum_probs=70.6
Q ss_pred CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceee--eeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304 197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGF--NRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR 272 (537)
Q Consensus 197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~--t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~ 272 (537)
.+++++|++|+|||||++.+.+..+ ..+.|+.|. ....+.+++ .+.+.+||++|++.+...+..++..
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~-------- 74 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRG-------- 74 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCc--------
Confidence 4799999999999999999998766 345677773 334555555 4678999999998887777666655
Q ss_pred CCccceeeEEee-cCcccccCCccccccc
Q psy16304 273 PDSRTCQVYLIM-CGVHQVSGIPDELTSA 300 (537)
Q Consensus 273 ~~~~~~il~v~D-s~~~~~~~l~~~l~~~ 300 (537)
++++++++| ++.+.+.++..++..+
T Consensus 75 ---~~~ii~v~d~~~~~s~~~l~~~~~~~ 100 (166)
T cd01869 75 ---AHGIIIVYDVTDQESFNNVKQWLQEI 100 (166)
T ss_pred ---CCEEEEEEECcCHHHHHhHHHHHHHH
Confidence 899999999 6666666666555443
No 431
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.88 E-value=1.7e-10 Score=115.46 Aligned_cols=68 Identities=9% Similarity=0.058 Sum_probs=42.9
Q ss_pred chhhhhcCCCceeeecccccccceec--cCCceEEEEEe--cCchhhH--HHHHHHHHhc-CCEEEEEEeCCCcchhhhh
Q psy16304 325 SIIKRILGEPIISLVPTVGFNRARVE--YGNKYEVFLYD--LGGSEDF--RTIWKQYLGT-VSQTLLVSHSLSGRPDDRC 397 (537)
Q Consensus 325 ~li~~LSgG~rqrvs~ti~la~all~--~~e~p~lllLD--T~Gl~~~--~~l~~~~~~~-~~~vIlVvdshd~~~~~~~ 397 (537)
..+.+||+|++|++ ++++++.. ..+ |+++++| |++++.. ..+++.+.+. .+.+++++ +|+.+..+.+
T Consensus 162 ~~~~~lS~G~~qr~----~la~al~~~~~~~-~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~i-SH~~~~~~~~ 235 (251)
T cd03273 162 ESLTELSGGQRSLV----ALSLILALLLFKP-APMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVV-SLKEGMFNNA 235 (251)
T ss_pred ccccccCHHHHHHH----HHHHHHHHhhccC-CCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEE-ECCHHHHHhC
Confidence 34789999999999 88887753 122 7999999 8898332 2222333221 23455555 7776555544
Q ss_pred h
Q psy16304 398 Q 398 (537)
Q Consensus 398 ~ 398 (537)
+
T Consensus 236 d 236 (251)
T cd03273 236 N 236 (251)
T ss_pred C
Confidence 3
No 432
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=98.88 E-value=5.6e-09 Score=101.27 Aligned_cols=92 Identities=22% Similarity=0.264 Sum_probs=73.8
Q ss_pred eEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee--eEEEEEC------CcEEEEEeecCCCchhhHHHHhhhhccccC
Q psy16304 198 PILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN--RARVEYG------NKYEVFLYDLGGSEDFRTIWKQYLGTVSQT 268 (537)
Q Consensus 198 ~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t--~~~i~i~------g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~ 268 (537)
+++++|.+|+|||||++.+.+..| ..+.||.|.+ ...+.++ ..+.+.+||++|++.++.++..++..
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~---- 77 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQ---- 77 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCc----
Confidence 689999999999999999999877 5577899843 3345553 24789999999999888777777766
Q ss_pred CCCCCCccceeeEEee-cCcccccCCccccccc
Q psy16304 269 PLGRPDSRTCQVYLIM-CGVHQVSGIPDELTSA 300 (537)
Q Consensus 269 ~~l~~~~~~~il~v~D-s~~~~~~~l~~~l~~~ 300 (537)
++++++|+| ++...++++..|+..+
T Consensus 78 -------ad~iIlVyDvtn~~Sf~~l~~W~~ei 103 (202)
T cd04102 78 -------VNGIILVHDLTNRKSSQNLQRWSLEA 103 (202)
T ss_pred -------CCEEEEEEECcChHHHHHHHHHHHHH
Confidence 899999999 8888888777766544
No 433
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=98.88 E-value=4.1e-09 Score=98.00 Aligned_cols=93 Identities=22% Similarity=0.352 Sum_probs=71.1
Q ss_pred CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee--eEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304 197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN--RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR 272 (537)
Q Consensus 197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t--~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~ 272 (537)
.+++++|++|||||||++.+.+.++ ..+.|+.|.. ..++..++ ...+.+||++|+++++..+..++..
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~-------- 73 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRG-------- 73 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccC--------
Confidence 3699999999999999999999887 4567888843 34455554 4789999999998887776666555
Q ss_pred CCccceeeEEee-cCcccccCCccccccc
Q psy16304 273 PDSRTCQVYLIM-CGVHQVSGIPDELTSA 300 (537)
Q Consensus 273 ~~~~~~il~v~D-s~~~~~~~l~~~l~~~ 300 (537)
++++++++| ++.+.++.+.+++..+
T Consensus 74 ---~~~~l~v~d~~~~~s~~~~~~~~~~i 99 (165)
T cd01865 74 ---AMGFILMYDITNEESFNAVQDWSTQI 99 (165)
T ss_pred ---CcEEEEEEECCCHHHHHHHHHHHHHH
Confidence 899999999 6666666665555443
No 434
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=98.88 E-value=5.1e-09 Score=97.50 Aligned_cols=107 Identities=21% Similarity=0.355 Sum_probs=76.5
Q ss_pred CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee--EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304 197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR--ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR 272 (537)
Q Consensus 197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~--~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~ 272 (537)
.+++++|++|+|||||++.+.+.++ ..+.|+.|... ..+.+++ .+.+.+||++|++.+...+..++..
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~-------- 75 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRG-------- 75 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCC--------
Confidence 5799999999999999999999877 55678888433 4566665 4688999999998877666665554
Q ss_pred CCccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEEec
Q psy16304 273 PDSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVLG 317 (537)
Q Consensus 273 ~~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llG 317 (537)
++++++++| ++.+.+..+..++..+... .....++.++|
T Consensus 76 ---ad~~i~v~d~~~~~s~~~~~~~~~~i~~~---~~~~~p~iiv~ 115 (167)
T cd01867 76 ---AMGIILVYDITDEKSFENIRNWMRNIEEH---ASEDVERMLVG 115 (167)
T ss_pred ---CCEEEEEEECcCHHHHHhHHHHHHHHHHh---CCCCCcEEEEE
Confidence 899999999 6666666555544433221 12234555555
No 435
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=98.88 E-value=4.4e-09 Score=96.89 Aligned_cols=90 Identities=20% Similarity=0.371 Sum_probs=68.5
Q ss_pred eEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee--EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304 198 PILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR--ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP 273 (537)
Q Consensus 198 ~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~--~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~ 273 (537)
+++++|++|+|||||++.+++.++ ..+.|+.|+.. ..+.+++ .+.+.+||++|++.+...+..++..
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~--------- 72 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKD--------- 72 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhcc---------
Confidence 689999999999999999999876 56678888543 3455554 5788999999998777666665554
Q ss_pred CccceeeEEee-cCcccccCCccccc
Q psy16304 274 DSRTCQVYLIM-CGVHQVSGIPDELT 298 (537)
Q Consensus 274 ~~~~~il~v~D-s~~~~~~~l~~~l~ 298 (537)
++++++++| ++...+..+..++.
T Consensus 73 --~d~~ilv~D~~~~~s~~~~~~~~~ 96 (168)
T cd04119 73 --TQGVLLVYDVTDRQSFEALDSWLK 96 (168)
T ss_pred --CCEEEEEEECCCHHHHHhHHHHHH
Confidence 889999999 66655555544443
No 436
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=98.88 E-value=5.8e-09 Score=96.83 Aligned_cols=106 Identities=20% Similarity=0.332 Sum_probs=75.8
Q ss_pred eEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee--eEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304 198 PILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN--RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP 273 (537)
Q Consensus 198 ~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t--~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~ 273 (537)
+++++|++|+|||||++.+.+..+ ..+.||.|.. ...+.+++ .+.+.+||++|+.++...+..++..
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~--------- 72 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRR--------- 72 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcC---------
Confidence 689999999999999999988766 4567888843 34566665 4678999999998877666665555
Q ss_pred CccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEEec
Q psy16304 274 DSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVLG 317 (537)
Q Consensus 274 ~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llG 317 (537)
++++++++| ++.+.++.+..++..+... .....++.++|
T Consensus 73 --~~~~i~v~d~~~~~sf~~~~~~~~~~~~~---~~~~~~iilvg 112 (161)
T cd04117 73 --AQGIFLVYDISSERSYQHIMKWVSDVDEY---APEGVQKILIG 112 (161)
T ss_pred --CcEEEEEEECCCHHHHHHHHHHHHHHHHh---CCCCCeEEEEE
Confidence 899999999 7766666665544433222 12234556665
No 437
>KOG0079|consensus
Probab=98.88 E-value=1.7e-09 Score=97.10 Aligned_cols=93 Identities=23% Similarity=0.377 Sum_probs=81.1
Q ss_pred eEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee--eeeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304 198 PILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP 273 (537)
Q Consensus 198 ~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G--~t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~ 273 (537)
+..|+|.+|+|||+|+-++....| ..+..|.| |...++.++| .+++.+||++|+++++.+...++..
T Consensus 10 kllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrg--------- 80 (198)
T KOG0079|consen 10 KLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRG--------- 80 (198)
T ss_pred HHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccC---------
Confidence 357899999999999999998877 45788899 6677888887 6899999999999999999988887
Q ss_pred CccceeeEEee-cCcccccCCcccccccC
Q psy16304 274 DSRTCQVYLIM-CGVHQVSGIPDELTSAT 301 (537)
Q Consensus 274 ~~~~~il~v~D-s~~~~~~~l~~~l~~~~ 301 (537)
+++++.|+| +..+.+.++..||+.+.
T Consensus 81 --thgv~vVYDVTn~ESF~Nv~rWLeei~ 107 (198)
T KOG0079|consen 81 --THGVIVVYDVTNGESFNNVKRWLEEIR 107 (198)
T ss_pred --CceEEEEEECcchhhhHhHHHHHHHHH
Confidence 999999999 88899999998876653
No 438
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=98.88 E-value=5.2e-09 Score=97.27 Aligned_cols=110 Identities=16% Similarity=0.293 Sum_probs=72.7
Q ss_pred CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceee-eeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304 197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGF-NRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP 273 (537)
Q Consensus 197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~-t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~ 273 (537)
.+++++|++|+|||||++.+.+..+ ..+.|+.+. .+..+..++ ...+.+||++|++++..++...+..
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~--------- 72 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISK--------- 72 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhc---------
Confidence 4799999999999999999998876 445677662 233344443 4678999999998877665555444
Q ss_pred CccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEEec
Q psy16304 274 DSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVLG 317 (537)
Q Consensus 274 ~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llG 317 (537)
++++++++| ++...++++..++..+...........++.++|
T Consensus 73 --~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~ 115 (165)
T cd04140 73 --GHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVG 115 (165)
T ss_pred --CCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEE
Confidence 788999999 666555555444433332211111334555554
No 439
>KOG0084|consensus
Probab=98.87 E-value=7e-09 Score=97.74 Aligned_cols=108 Identities=21% Similarity=0.375 Sum_probs=89.6
Q ss_pred ccEEEeccCccCccchhhhhcCCC-ceeeecccccccc--eeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304 311 VPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFNRA--RVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVS 386 (537)
Q Consensus 311 ~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la~a--ll~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVv 386 (537)
.+++++|.+++||+.++.+|++|- ..+...|+|+.-. .+..++ ..++.+|||+|+++++.+...|++.++|+|+|+
T Consensus 10 FKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~vy 89 (205)
T KOG0084|consen 10 FKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIFVY 89 (205)
T ss_pred EEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEEEE
Confidence 467899999999999999999998 7778888885433 232233 478899999999999999999999999999999
Q ss_pred eCCCcchhhhhhhhhhc------CCcEEEEeccc-chhh
Q psy16304 387 HSLSGRPDDRCQVYLMS------CNCQVYLISAK-NLSN 418 (537)
Q Consensus 387 dshd~~~~~~~~i~ll~------~G~ii~~g~nk-dl~~ 418 (537)
|.++++++..+..|+-+ .+.+....+|+ |+.+
T Consensus 90 DiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~ 128 (205)
T KOG0084|consen 90 DITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTE 128 (205)
T ss_pred EcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHh
Confidence 99999999999987765 44567777888 7744
No 440
>KOG0087|consensus
Probab=98.87 E-value=2e-09 Score=102.39 Aligned_cols=109 Identities=17% Similarity=0.284 Sum_probs=89.1
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee--eeeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCC
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL 270 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G--~t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~ 270 (537)
...++.|+|.+|+|||-||.+++..+| ....+|.| |....+.++| .++.++||++|+++++.+...++..
T Consensus 13 ylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrg------ 86 (222)
T KOG0087|consen 13 YLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRG------ 86 (222)
T ss_pred eEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcc------
Confidence 467799999999999999999999988 45679999 4455677776 5788999999999999888888777
Q ss_pred CCCCccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEEec
Q psy16304 271 GRPDSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVLG 317 (537)
Q Consensus 271 l~~~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llG 317 (537)
+.+.++|+| +.+..++++..||..+ +........+.++|
T Consensus 87 -----AvGAllVYDITr~~Tfenv~rWL~EL---Rdhad~nivimLvG 126 (222)
T KOG0087|consen 87 -----AVGALLVYDITRRQTFENVERWLKEL---RDHADSNIVIMLVG 126 (222)
T ss_pred -----cceeEEEEechhHHHHHHHHHHHHHH---HhcCCCCeEEEEee
Confidence 999999999 7888888888766554 34455567777876
No 441
>KOG0394|consensus
Probab=98.87 E-value=3.1e-09 Score=98.90 Aligned_cols=123 Identities=17% Similarity=0.310 Sum_probs=90.3
Q ss_pred CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee--eeeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304 197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR 272 (537)
Q Consensus 197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G--~t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~ 272 (537)
-+|.|+|.+|+|||+|++.+...+| ..+..|.| |..+++.+++ -+.+++|||+|++++.++...++..
T Consensus 10 LKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRg-------- 81 (210)
T KOG0394|consen 10 LKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRG-------- 81 (210)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecC--------
Confidence 6799999999999999999998777 45789999 7788888886 5789999999999987654444444
Q ss_pred CCccceeeEEee-cCcccccCCcccccccCcCCc-cccCCccEEEeccCccCccchhhhhcCCCceee
Q psy16304 273 PDSRTCQVYLIM-CGVHQVSGIPDELTSATHLPL-VDFRSVPILVLGLDNAGKSSIIKRILGEPIISL 338 (537)
Q Consensus 273 ~~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~-~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrv 338 (537)
+|..++++| ....+++++..|-+.+-.... ......+..++|- |.. +++|..+.+
T Consensus 82 ---aDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGN----KiD----~~~~~~r~V 138 (210)
T KOG0394|consen 82 ---ADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGN----KID----VDGGKSRQV 138 (210)
T ss_pred ---CceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcc----ccc----CCCCcccee
Confidence 999999999 777777777655433321111 2224567778873 333 667775555
No 442
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=98.86 E-value=6.5e-09 Score=95.49 Aligned_cols=84 Identities=31% Similarity=0.682 Sum_probs=69.9
Q ss_pred eEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccc
Q psy16304 198 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRT 277 (537)
Q Consensus 198 ~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~ 277 (537)
+++++|+.|+|||||++.+++.++....|+.|++...+.+.+ ..+.+||++|+..++..+...+.. ++
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~D~~G~~~~~~~~~~~~~~-----------~~ 68 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKN-VSFTVWDVGGQDKIRPLWKHYYEN-----------TN 68 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceEEEEECC-EEEEEEECCCChhhHHHHHHHhcc-----------CC
Confidence 589999999999999999999877777899998888888875 999999999998887777766665 89
Q ss_pred eeeEEee-cCcccccCC
Q psy16304 278 CQVYLIM-CGVHQVSGI 293 (537)
Q Consensus 278 ~il~v~D-s~~~~~~~l 293 (537)
++++++| ++...+...
T Consensus 69 ~~i~v~D~~~~~~~~~~ 85 (158)
T cd00878 69 GIIFVVDSSDRERIEEA 85 (158)
T ss_pred EEEEEEECCCHHHHHHH
Confidence 9999999 554444333
No 443
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=98.85 E-value=6.8e-09 Score=101.84 Aligned_cols=108 Identities=19% Similarity=0.390 Sum_probs=78.4
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeeeEEEE--ECC-cEEEEEeecCCCchhhHHHHhhhhccccCCC
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNRARVE--YGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL 270 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~~~i~--i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~ 270 (537)
...++++||.+|+|||||++.+....+ ..+.||.|++...+. .++ .+.+.+||++|++.++.++..++..
T Consensus 12 ~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~------ 85 (219)
T PLN03071 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH------ 85 (219)
T ss_pred CceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHccc------
Confidence 457899999999999999999877666 567899996655443 333 5799999999998887777666555
Q ss_pred CCCCccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEEec
Q psy16304 271 GRPDSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVLG 317 (537)
Q Consensus 271 l~~~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llG 317 (537)
++++++++| ++...+..+..|+..+... ....++.++|
T Consensus 86 -----~~~~ilvfD~~~~~s~~~i~~w~~~i~~~----~~~~piilvg 124 (219)
T PLN03071 86 -----GQCAIIMFDVTARLTYKNVPTWHRDLCRV----CENIPIVLCG 124 (219)
T ss_pred -----ccEEEEEEeCCCHHHHHHHHHHHHHHHHh----CCCCcEEEEE
Confidence 889999999 7777666665554443221 1234566665
No 444
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=98.85 E-value=7.7e-09 Score=95.73 Aligned_cols=91 Identities=16% Similarity=0.315 Sum_probs=68.6
Q ss_pred CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceee--eeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304 197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGF--NRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR 272 (537)
Q Consensus 197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~--t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~ 272 (537)
.+++++|++|||||||++.+.+..+ ..+.|+.|. ....+.+++ ...+.+||++|++.+..++..++..
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~-------- 75 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRG-------- 75 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCC--------
Confidence 4799999999999999999998876 356788884 344566665 3678999999998877666655554
Q ss_pred CCccceeeEEee-cCcccccCCccccc
Q psy16304 273 PDSRTCQVYLIM-CGVHQVSGIPDELT 298 (537)
Q Consensus 273 ~~~~~~il~v~D-s~~~~~~~l~~~l~ 298 (537)
++++++++| ++...+..+..++.
T Consensus 76 ---~~~~i~v~d~~~~~s~~~~~~~~~ 99 (165)
T cd01868 76 ---AVGALLVYDITKKQTFENVERWLK 99 (165)
T ss_pred ---CCEEEEEEECcCHHHHHHHHHHHH
Confidence 788999999 65555555554443
No 445
>KOG0095|consensus
Probab=98.84 E-value=6.8e-09 Score=93.29 Aligned_cols=96 Identities=21% Similarity=0.356 Sum_probs=78.1
Q ss_pred CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee--eeeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304 197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR 272 (537)
Q Consensus 197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G--~t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~ 272 (537)
.++.|||.-|+|||+|++.++..-| .+...|.| |-.+++.++| .+++++||++|++++|.+...++..
T Consensus 8 fkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrs-------- 79 (213)
T KOG0095|consen 8 FKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRS-------- 79 (213)
T ss_pred EEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhh--------
Confidence 5799999999999999999997633 34445666 6778899987 6899999999999999999999887
Q ss_pred CCccceeeEEee-cCcccccCCcccccccCcC
Q psy16304 273 PDSRTCQVYLIM-CGVHQVSGIPDELTSATHL 303 (537)
Q Consensus 273 ~~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l 303 (537)
++++++++| +-...+.-+.+|+..++.+
T Consensus 80 ---ahalilvydiscqpsfdclpewlreie~y 108 (213)
T KOG0095|consen 80 ---AHALILVYDISCQPSFDCLPEWLREIEQY 108 (213)
T ss_pred ---cceEEEEEecccCcchhhhHHHHHHHHHH
Confidence 999999999 6666666667766555443
No 446
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.84 E-value=5.4e-10 Score=129.36 Aligned_cols=96 Identities=9% Similarity=0.114 Sum_probs=64.9
Q ss_pred EEeccCccCccchhhhhcCCCceeeecccccccceecc-CCceEEEEEe--cCchh--hHHHHH---HHHHhcCCEEEEE
Q psy16304 314 LVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEY-GNKYEVFLYD--LGGSE--DFRTIW---KQYLGTVSQTLLV 385 (537)
Q Consensus 314 ~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~-~e~p~lllLD--T~Gl~--~~~~l~---~~~~~~~~~vIlV 385 (537)
..+|+........+.+|||||+||+ .++++++.. .+ |++++|| |+|++ ....++ ..+.+. +.++++
T Consensus 813 ~~~gL~~l~l~~~~~tLSgGe~QRl----~LA~aL~~~~~~-p~llILDEPtsgLD~~~~~~L~~~L~~l~~~-G~TVIv 886 (924)
T TIGR00630 813 CDVGLGYIKLGQPATTLSGGEAQRI----KLAKELSKRSTG-RTLYILDEPTTGLHFDDIKKLLEVLQRLVDQ-GNTVVV 886 (924)
T ss_pred HHcCCCchhhcCccccCCHHHHHHH----HHHHHHhhcCCC-CCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEE
Confidence 3566654222444789999999999 999998862 13 7999999 99992 222333 344333 346666
Q ss_pred EeCCCcchhhhhh-hhhh------cCCcEEEEecccch
Q psy16304 386 SHSLSGRPDDRCQ-VYLM------SCNCQVYLISAKNL 416 (537)
Q Consensus 386 vdshd~~~~~~~~-i~ll------~~G~ii~~g~nkdl 416 (537)
+ +|+......++ ++.+ ++|+++..|++.++
T Consensus 887 i-~H~~~~i~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 887 I-EHNLDVIKTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred E-eCCHHHHHhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 6 78877766555 7777 68899888776543
No 447
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=98.84 E-value=8e-09 Score=97.19 Aligned_cols=85 Identities=27% Similarity=0.609 Sum_probs=69.4
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCC
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPD 274 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~ 274 (537)
+..+++++|++|+|||||++.+++..+....||.|.+...+.+.+ ..+.+||++|+..++..+..++..
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~D~~G~~~~~~~~~~~~~~---------- 82 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEEIVYKN-IRFLMWDIGGQESLRSSWNTYYTN---------- 82 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECC-eEEEEEECCCCHHHHHHHHHHhhc----------
Confidence 356899999999999999999988777667889887777777775 999999999998887777666554
Q ss_pred ccceeeEEee-cCccccc
Q psy16304 275 SRTCQVYLIM-CGVHQVS 291 (537)
Q Consensus 275 ~~~~il~v~D-s~~~~~~ 291 (537)
++++++++| ++.+.+.
T Consensus 83 -~d~vi~V~D~s~~~~~~ 99 (174)
T cd04153 83 -TDAVILVIDSTDRERLP 99 (174)
T ss_pred -CCEEEEEEECCCHHHHH
Confidence 899999999 5554433
No 448
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=98.84 E-value=6.9e-09 Score=95.83 Aligned_cols=93 Identities=18% Similarity=0.299 Sum_probs=69.7
Q ss_pred CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee-eeeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304 197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG-FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP 273 (537)
Q Consensus 197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G-~t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~ 273 (537)
.+++++|.+|+|||||++.+.+..+ ..+.||.+ +....+.+++ ...+.+||++|+++++.++..++..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~--------- 72 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKN--------- 72 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhh---------
Confidence 4699999999999999988887766 44566665 4445666765 4578899999998888777776665
Q ss_pred CccceeeEEee-cCcccccCCccccccc
Q psy16304 274 DSRTCQVYLIM-CGVHQVSGIPDELTSA 300 (537)
Q Consensus 274 ~~~~~il~v~D-s~~~~~~~l~~~l~~~ 300 (537)
++++++++| ++...+.++..++..+
T Consensus 73 --ad~~i~v~d~~~~~s~~~~~~~~~~~ 98 (163)
T cd04176 73 --GQGFIVVYSLVNQQTFQDIKPMRDQI 98 (163)
T ss_pred --CCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 899999999 6666665555544443
No 449
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=98.84 E-value=1.1e-08 Score=95.31 Aligned_cols=91 Identities=19% Similarity=0.368 Sum_probs=68.2
Q ss_pred CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee--eEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304 196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN--RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG 271 (537)
Q Consensus 196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t--~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l 271 (537)
..+++++|++|+|||||++.+.+..+ ..+.|+.|+. ...+.+++ .+.+.+||++|+++++.++..++..
T Consensus 5 ~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~------- 77 (170)
T cd04116 5 LLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRG------- 77 (170)
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcC-------
Confidence 46799999999999999999998766 3456777743 34556654 4678899999998888777766655
Q ss_pred CCCccceeeEEee-cCcccccCCcccc
Q psy16304 272 RPDSRTCQVYLIM-CGVHQVSGIPDEL 297 (537)
Q Consensus 272 ~~~~~~~il~v~D-s~~~~~~~l~~~l 297 (537)
++++++++| ++.+.++.+..+.
T Consensus 78 ----~d~~i~v~d~~~~~s~~~~~~~~ 100 (170)
T cd04116 78 ----SDCCLLTFAVDDSQSFQNLSNWK 100 (170)
T ss_pred ----CCEEEEEEECCCHHHHHhHHHHH
Confidence 788999999 6565555554433
No 450
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=98.83 E-value=8.7e-09 Score=94.34 Aligned_cols=88 Identities=18% Similarity=0.296 Sum_probs=65.8
Q ss_pred CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee-eEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304 197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN-RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP 273 (537)
Q Consensus 197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t-~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~ 273 (537)
.+++++|++|+|||||++.+.+..+ ..+.||.|.. ...+.+++ ...+.+||++|+++++.++..++..
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~--------- 72 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT--------- 72 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhc---------
Confidence 3689999999999999999998776 4566777722 33455555 3568889999999888877777666
Q ss_pred CccceeeEEee-cCcccccCCcc
Q psy16304 274 DSRTCQVYLIM-CGVHQVSGIPD 295 (537)
Q Consensus 274 ~~~~~il~v~D-s~~~~~~~l~~ 295 (537)
++++++++| ++...+.++..
T Consensus 73 --~~~~i~v~~~~~~~s~~~~~~ 93 (162)
T cd04138 73 --GEGFLCVFAINSRKSFEDIHT 93 (162)
T ss_pred --CCEEEEEEECCCHHHHHHHHH
Confidence 888999999 55544444433
No 451
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=98.83 E-value=1e-08 Score=94.22 Aligned_cols=89 Identities=20% Similarity=0.346 Sum_probs=66.9
Q ss_pred eEEEEeCCCCcHHHHHHHHhCCCC-ccccCceee--eeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304 198 PILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGF--NRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP 273 (537)
Q Consensus 198 ~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~--t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~ 273 (537)
+++++|+.|+|||||++.+.+..+ ....|+.|. ....+.+++ ...+.+||++|+..++..+..++..
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~--------- 72 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRD--------- 72 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcc---------
Confidence 689999999999999999999876 345677773 344566665 3578999999998887766666655
Q ss_pred CccceeeEEee-cCcccccCCcccc
Q psy16304 274 DSRTCQVYLIM-CGVHQVSGIPDEL 297 (537)
Q Consensus 274 ~~~~~il~v~D-s~~~~~~~l~~~l 297 (537)
++++++++| ++...+..+..++
T Consensus 73 --~~~ii~v~d~~~~~s~~~~~~~~ 95 (161)
T cd01861 73 --SSVAVVVYDITNRQSFDNTDKWI 95 (161)
T ss_pred --CCEEEEEEECcCHHHHHHHHHHH
Confidence 889999999 6555555544443
No 452
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=98.83 E-value=6.9e-09 Score=98.78 Aligned_cols=92 Identities=17% Similarity=0.300 Sum_probs=72.3
Q ss_pred eEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee--EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304 198 PILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR--ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP 273 (537)
Q Consensus 198 ~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~--~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~ 273 (537)
+++++|.+|+|||||++.+.+..| ..+.||.|... ..+.+++ .+.+.+||++|++.++.++..++..
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~--------- 72 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCND--------- 72 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcC---------
Confidence 689999999999999999988777 45789998443 5666765 4788999999998887766665555
Q ss_pred CccceeeEEee-cCcccccCCccccccc
Q psy16304 274 DSRTCQVYLIM-CGVHQVSGIPDELTSA 300 (537)
Q Consensus 274 ~~~~~il~v~D-s~~~~~~~l~~~l~~~ 300 (537)
++++++++| ++...+.++..++..+
T Consensus 73 --a~~iilv~D~t~~~s~~~i~~~~~~~ 98 (182)
T cd04128 73 --AVAILFMFDLTRKSTLNSIKEWYRQA 98 (182)
T ss_pred --CCEEEEEEECcCHHHHHHHHHHHHHH
Confidence 899999999 7777766665555433
No 453
>KOG0060|consensus
Probab=98.83 E-value=1.8e-09 Score=115.85 Aligned_cols=260 Identities=16% Similarity=0.079 Sum_probs=135.0
Q ss_pred cccccccceeeeeeeccchh--hhhHHHHHhhhcccccccccccccccCccccccccCC--CCCCchhHHHHHHHHHHH-
Q psy16304 74 PIEMVEHKMLRDVVLYNMYK--AEIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSD--DPAPTFEVCIVSLLVHLM- 148 (537)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~p~~~~~~~~l~~~m- 148 (537)
|-+=+.|..+--+|++|.|- --+....++.....++..-.+=.+|+-++++.-.+.. .++-+.+- .....+
T Consensus 340 ~y~~~s~aEL~~~i~~na~~~i~Li~~f~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~----~~~~E~~ 415 (659)
T KOG0060|consen 340 VYDDLSPAELSGLISNNAFVFIYLISAFGRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEE----EELGEAE 415 (659)
T ss_pred ccCCcCHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhh----hhhhhhh
Confidence 44444566666678888653 4456677777777766666666667666655332221 11111100 000000
Q ss_pred --------------HhhhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHH
Q psy16304 149 --------------RGILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIK 214 (537)
Q Consensus 149 --------------~~~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~ 214 (537)
.+.++.+++++-. .+. + .-.+..++++.+..|..+.|.||||+|||+|++
T Consensus 416 ~~l~~~~G~~~~~~~Dn~i~~e~v~l~-----tPt----------~-g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlR 479 (659)
T KOG0060|consen 416 WGLSLPPGSGKAEPADNAIEFEEVSLS-----TPT----------N-GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLR 479 (659)
T ss_pred hccCCCCCCcccccccceEEeeeeeec-----CCC----------C-CceeeeeeeeEecCCCeEEEECCCCCchhHHHH
Confidence 0112222222221 000 0 122455788999999999999999999999999
Q ss_pred HHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCC-ccceeeEEe---ecCcccc
Q psy16304 215 RILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPD-SRTCQVYLI---MCGVHQV 290 (537)
Q Consensus 215 ~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~---Ds~~~~~ 290 (537)
.|.|. -.-+.| .+.... |- +. ..+=++||.|+.-.. ..+-+++=. |.+....
T Consensus 480 vlggL----Wp~~~G----~l~k~~-------~~-~~--------~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~ 535 (659)
T KOG0060|consen 480 VLGGL----WPSTGG----KLTKPT-------DG-GP--------KDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSA 535 (659)
T ss_pred HHhcc----cccCCC----eEEecc-------cC-CC--------CceEEecCCCCccccchhheeeccCccccccccCC
Confidence 99998 555777 555332 10 00 124456777653221 222222110 0000000
Q ss_pred --cCCcccccccCcCCccccCCccEEEe-ccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCch
Q psy16304 291 --SGIPDELTSATHLPLVDFRSVPILVL-GLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGS 365 (537)
Q Consensus 291 --~~l~~~l~~~~~l~~~~~~~~~L~ll-Gl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl 365 (537)
+.+...+++. .. .-.+... |++..........||+|++||+ ++||-..+ . |++-+|| |+.+
T Consensus 536 ~d~~i~r~Le~v---~L----~hl~~r~ggld~~~~~dW~dvLS~GEqQRL----a~ARLfy~-k--Pk~AiLDE~TSAv 601 (659)
T KOG0060|consen 536 SDEDILRILENV---QL----GHLLEREGGLDQQVDWDWMDVLSPGEQQRL----AFARLFYH-K--PKFAILDECTSAV 601 (659)
T ss_pred CHHHHHHHHHHh---hh----hhHHHHhCCCCchhhccHHhhcCHHHHHHH----HHHHHHhc-C--CceEEeechhhhc
Confidence 0011111111 00 0001111 2221122334678999999999 99999987 5 8999999 8888
Q ss_pred h-hHHHHHHHHHhcCCEEEEEEeCCCcc
Q psy16304 366 E-DFRTIWKQYLGTVSQTLLVSHSLSGR 392 (537)
Q Consensus 366 ~-~~~~l~~~~~~~~~~vIlVvdshd~~ 392 (537)
. ......-...++.+.+.+.+ .|...
T Consensus 602 ~~dvE~~~Yr~~r~~giT~iSV-gHRkS 628 (659)
T KOG0060|consen 602 TEDVEGALYRKCREMGITFISV-GHRKS 628 (659)
T ss_pred cHHHHHHHHHHHHHcCCeEEEe-ccHHH
Confidence 3 22223333445556677777 77654
No 454
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=98.83 E-value=9.3e-09 Score=98.06 Aligned_cols=108 Identities=18% Similarity=0.226 Sum_probs=78.9
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee-EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG 271 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~-~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l 271 (537)
...+++++|..|+|||||++.+.+..| ..+.||.|... ..+.+++ .+.+.+||++|++.++.++..++..
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~------- 76 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPD------- 76 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCC-------
Confidence 346799999999999999999998877 56788988332 3456665 5789999999998887766655554
Q ss_pred CCCccceeeEEee-cCcccccCC-cccccccCcCCccccCCccEEEec
Q psy16304 272 RPDSRTCQVYLIM-CGVHQVSGI-PDELTSATHLPLVDFRSVPILVLG 317 (537)
Q Consensus 272 ~~~~~~~il~v~D-s~~~~~~~l-~~~l~~~~~l~~~~~~~~~L~llG 317 (537)
++++++++| +++..++++ ..|+..+... . ...++.++|
T Consensus 77 ----ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~---~-~~~piilVg 116 (182)
T cd04172 77 ----SDAVLICFDISRPETLDSVLKKWKGEIQEF---C-PNTKMLLVG 116 (182)
T ss_pred ----CCEEEEEEECCCHHHHHHHHHHHHHHHHHH---C-CCCCEEEEe
Confidence 899999999 777777665 4444433222 1 235566776
No 455
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.83 E-value=8.5e-09 Score=97.87 Aligned_cols=106 Identities=18% Similarity=0.232 Sum_probs=75.0
Q ss_pred CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee-EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304 197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP 273 (537)
Q Consensus 197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~-~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~ 273 (537)
.+++++|++|+|||||++.+.+..| ..+.||.|... ..+.+++ .+.+.+||++|++.++.+...++..
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~--------- 72 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPD--------- 72 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCC---------
Confidence 3699999999999999999998877 56778887322 3455665 4788999999998776554444443
Q ss_pred CccceeeEEee-cCcccccCC-cccccccCcCCccccCCccEEEec
Q psy16304 274 DSRTCQVYLIM-CGVHQVSGI-PDELTSATHLPLVDFRSVPILVLG 317 (537)
Q Consensus 274 ~~~~~il~v~D-s~~~~~~~l-~~~l~~~~~l~~~~~~~~~L~llG 317 (537)
++++++++| ++.+.++++ ..|+..+... . ...++.++|
T Consensus 73 --a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~---~-~~~~iilVg 112 (178)
T cd04131 73 --SDAVLICFDISRPETLDSVLKKWRGEIQEF---C-PNTKVLLVG 112 (178)
T ss_pred --CCEEEEEEECCChhhHHHHHHHHHHHHHHH---C-CCCCEEEEE
Confidence 889999999 777777664 4444333222 1 235566676
No 456
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=98.82 E-value=9.3e-09 Score=97.12 Aligned_cols=105 Identities=22% Similarity=0.304 Sum_probs=74.8
Q ss_pred eEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeeeE-EEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCCCC
Q psy16304 198 PILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNRA-RVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPD 274 (537)
Q Consensus 198 ~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~~-~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~ 274 (537)
++++||.+|+|||||++.+.+..| ..+.||.|.... .+.+++ .+.+.+||++|++++..++..++..
T Consensus 3 ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~---------- 72 (175)
T cd01874 3 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQ---------- 72 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhccc----------
Confidence 689999999999999999998877 667899884332 455554 4678899999998877665555544
Q ss_pred ccceeeEEee-cCcccccCCcc-cccccCcCCccccCCccEEEec
Q psy16304 275 SRTCQVYLIM-CGVHQVSGIPD-ELTSATHLPLVDFRSVPILVLG 317 (537)
Q Consensus 275 ~~~~il~v~D-s~~~~~~~l~~-~l~~~~~l~~~~~~~~~L~llG 317 (537)
++++++++| ++++.++++.. ++..+... ....++.++|
T Consensus 73 -a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~----~~~~piilvg 112 (175)
T cd01874 73 -TDVFLVCFSVVSPSSFENVKEKWVPEITHH----CPKTPFLLVG 112 (175)
T ss_pred -CCEEEEEEECCCHHHHHHHHHHHHHHHHHh----CCCCCEEEEE
Confidence 899999999 77666665542 33333211 1235566665
No 457
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=98.82 E-value=1.2e-08 Score=95.22 Aligned_cols=91 Identities=15% Similarity=0.262 Sum_probs=67.7
Q ss_pred CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee--EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304 197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR--ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR 272 (537)
Q Consensus 197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~--~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~ 272 (537)
.+++++|++|||||||++.+.+..+ ....|+.|.+. ..+.+++ ...+.+||++|++++..++..++..
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~-------- 76 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRG-------- 76 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcc--------
Confidence 4799999999999999999999866 44567777443 3455554 4688999999998777666555554
Q ss_pred CCccceeeEEee-cCcccccCCccccc
Q psy16304 273 PDSRTCQVYLIM-CGVHQVSGIPDELT 298 (537)
Q Consensus 273 ~~~~~~il~v~D-s~~~~~~~l~~~l~ 298 (537)
++++++++| ++...+..+..++.
T Consensus 77 ---~d~il~v~d~~~~~s~~~~~~~~~ 100 (168)
T cd01866 77 ---AAGALLVYDITRRETFNHLTSWLE 100 (168)
T ss_pred ---CCEEEEEEECCCHHHHHHHHHHHH
Confidence 889999999 66655555554443
No 458
>PTZ00369 Ras-like protein; Provisional
Probab=98.81 E-value=1e-08 Score=97.90 Aligned_cols=93 Identities=16% Similarity=0.227 Sum_probs=71.3
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee-eEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN-RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG 271 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t-~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l 271 (537)
+..+++++|.+|+|||||++.+.+..+ ..+.||.|.+ ...+.+++ .+.+.+||++|+++++.++..++..
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~------- 76 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRT------- 76 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhc-------
Confidence 357899999999999999999998766 4567887733 23455665 4678899999999988877777666
Q ss_pred CCCccceeeEEee-cCcccccCCccccc
Q psy16304 272 RPDSRTCQVYLIM-CGVHQVSGIPDELT 298 (537)
Q Consensus 272 ~~~~~~~il~v~D-s~~~~~~~l~~~l~ 298 (537)
++++++++| ++.+.++.+..+..
T Consensus 77 ----~d~iilv~D~s~~~s~~~~~~~~~ 100 (189)
T PTZ00369 77 ----GQGFLCVYSITSRSSFEEIASFRE 100 (189)
T ss_pred ----CCEEEEEEECCCHHHHHHHHHHHH
Confidence 899999999 66666555554443
No 459
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.81 E-value=1.2e-08 Score=97.07 Aligned_cols=92 Identities=18% Similarity=0.287 Sum_probs=70.3
Q ss_pred eEEEEeCCCCcHHHHHHHHhCCCCcc-ccCceeee--eEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304 198 PILVLGLDNAGKSSIIKRILGEPIIS-LVPTVGFN--RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP 273 (537)
Q Consensus 198 ~vgLVG~NGAGKSTLL~~L~G~~~~~-~~Pt~G~t--~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~ 273 (537)
+|+++|+.|+|||||++.+.+..+.. +.||.|.. ...+.+++ .+.+.+||++|++.+...+...+..
T Consensus 2 ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~--------- 72 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRG--------- 72 (188)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccC---------
Confidence 68999999999999999999988853 77888843 34566655 4678899999998777666666555
Q ss_pred CccceeeEEee-cCcccccCCccccccc
Q psy16304 274 DSRTCQVYLIM-CGVHQVSGIPDELTSA 300 (537)
Q Consensus 274 ~~~~~il~v~D-s~~~~~~~l~~~l~~~ 300 (537)
++++++++| ++.+.+..+..++..+
T Consensus 73 --~d~iilv~d~~~~~s~~~i~~~~~~i 98 (188)
T cd04125 73 --AHGYLLVYDVTDQESFENLKFWINEI 98 (188)
T ss_pred --CCEEEEEEECcCHHHHHHHHHHHHHH
Confidence 899999999 6666666555544433
No 460
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=98.81 E-value=1.1e-08 Score=98.00 Aligned_cols=106 Identities=18% Similarity=0.261 Sum_probs=77.8
Q ss_pred CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee-EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304 197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP 273 (537)
Q Consensus 197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~-~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~ 273 (537)
.+++++|.+|+|||||+..+....| ..+.||.|... ..+.+++ .+.+.+||++|+++++.++..++..
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~--------- 74 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQ--------- 74 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccC---------
Confidence 5799999999999999999998877 56789998432 2345555 4788999999999998777776665
Q ss_pred CccceeeEEee-cCcccccCCcc-cccccCcCCccccCCccEEEec
Q psy16304 274 DSRTCQVYLIM-CGVHQVSGIPD-ELTSATHLPLVDFRSVPILVLG 317 (537)
Q Consensus 274 ~~~~~il~v~D-s~~~~~~~l~~-~l~~~~~l~~~~~~~~~L~llG 317 (537)
++++++++| ++...++++.. +...+... ....++.++|
T Consensus 75 --a~~~ilvydit~~~Sf~~~~~~w~~~i~~~----~~~~piilvg 114 (191)
T cd01875 75 --TNVFIICFSIASPSSYENVRHKWHPEVCHH----CPNVPILLVG 114 (191)
T ss_pred --CCEEEEEEECCCHHHHHHHHHHHHHHHHhh----CCCCCEEEEE
Confidence 899999999 77777766642 33322211 1245666665
No 461
>KOG0075|consensus
Probab=98.81 E-value=1.5e-09 Score=97.47 Aligned_cols=115 Identities=30% Similarity=0.575 Sum_probs=88.4
Q ss_pred cccCCCCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccC
Q psy16304 190 SLFDFRSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQT 268 (537)
Q Consensus 190 ~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~ 268 (537)
+++.+..-.+.+||.-+||||||++.++...+ ....||.||+..++.-+. +.+.+||.+|+..++..|..+...
T Consensus 14 ~~f~k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~tkgn-vtiklwD~gGq~rfrsmWerycR~---- 88 (186)
T KOG0075|consen 14 NSFWKEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKVTKGN-VTIKLWDLGGQPRFRSMWERYCRG---- 88 (186)
T ss_pred HHHHHheeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEeccCc-eEEEEEecCCCccHHHHHHHHhhc----
Confidence 34444567789999999999999999987655 345799999998888665 999999999999999999999988
Q ss_pred CCCCCCccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEEecc
Q psy16304 269 PLGRPDSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVLGL 318 (537)
Q Consensus 269 ~~l~~~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl 318 (537)
.+++++++| ++.+.......++..+ +...+-...+++++|-
T Consensus 89 -------v~aivY~VDaad~~k~~~sr~EL~~L--L~k~~l~gip~LVLGn 130 (186)
T KOG0075|consen 89 -------VSAIVYVVDAADPDKLEASRSELHDL--LDKPSLTGIPLLVLGN 130 (186)
T ss_pred -------CcEEEEEeecCCcccchhhHHHHHHH--hcchhhcCCcEEEecc
Confidence 899999999 6666555555544333 1222344566777764
No 462
>KOG0070|consensus
Probab=98.81 E-value=8.3e-09 Score=96.47 Aligned_cols=113 Identities=29% Similarity=0.575 Sum_probs=96.2
Q ss_pred cCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEe
Q psy16304 308 FRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSH 387 (537)
Q Consensus 308 ~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvd 387 (537)
..+..+.++|++++||++++..|-.|+.....||+++....+...+ ..+.+||..|++..+.+|+.|++..+++|+|+|
T Consensus 15 ~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfnVE~v~ykn-~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvD 93 (181)
T KOG0070|consen 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFNVETVEYKN-ISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVD 93 (181)
T ss_pred cceEEEEEEeccCCCceeeeEeeccCCcccCCCccccceeEEEEcc-eEEEEEecCCCcccccchhhhccCCcEEEEEEe
Confidence 4566788999999999999999999998888999999999998887 999999999999999999999999999999999
Q ss_pred CCCcchhhhhh---hhhhc----CCcEEEEeccc-chhhhhc
Q psy16304 388 SLSGRPDDRCQ---VYLMS----CNCQVYLISAK-NLSNGFK 421 (537)
Q Consensus 388 shd~~~~~~~~---i~ll~----~G~ii~~g~nk-dl~~~~~ 421 (537)
+.|++.+.... ..++. .+.++...+|| |+..++.
T Consensus 94 S~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als 135 (181)
T KOG0070|consen 94 SSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALS 135 (181)
T ss_pred CCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCC
Confidence 99999887655 22222 36677778888 6655444
No 463
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.81 E-value=1.6e-09 Score=108.31 Aligned_cols=67 Identities=10% Similarity=0.037 Sum_probs=44.2
Q ss_pred chhhhhcCCCceeeecccccccceecc--CCceEEEEEe--cCchhhH-HH----HHHHHHhcCCEEEEEEeCCCcchhh
Q psy16304 325 SIIKRILGEPIISLVPTVGFNRARVEY--GNKYEVFLYD--LGGSEDF-RT----IWKQYLGTVSQTLLVSHSLSGRPDD 395 (537)
Q Consensus 325 ~li~~LSgG~rqrvs~ti~la~all~~--~e~p~lllLD--T~Gl~~~-~~----l~~~~~~~~~~vIlVvdshd~~~~~ 395 (537)
..+.+||+|+++++ +++++++.. .+ |+++++| |+|++.. .. .+..+.+. +.+++++ +|+.....
T Consensus 151 ~~~~~LS~G~k~rl----~la~al~~~~~~~-p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~-g~~vi~i-sH~~~~~~ 223 (247)
T cd03275 151 RDMDNLSGGEKTMA----ALALLFAIHSYQP-APFFVLDEVDAALDNTNVGKVASYIREQAGP-NFQFIVI-SLKEEFFS 223 (247)
T ss_pred hhHHHcCHHHHHHH----HHHHHHHHhccCC-CCEEEEecccccCCHHHHHHHHHHHHHhccC-CcEEEEE-ECCHHHHh
Confidence 34689999999999 888888752 23 7899999 8898432 22 22333222 3466666 78866655
Q ss_pred hhh
Q psy16304 396 RCQ 398 (537)
Q Consensus 396 ~~~ 398 (537)
.++
T Consensus 224 ~~d 226 (247)
T cd03275 224 KAD 226 (247)
T ss_pred hCC
Confidence 444
No 464
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=98.80 E-value=1.3e-08 Score=93.71 Aligned_cols=90 Identities=18% Similarity=0.393 Sum_probs=67.4
Q ss_pred eEEEEeCCCCcHHHHHHHHhCCCC-ccccCceee--eeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304 198 PILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGF--NRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP 273 (537)
Q Consensus 198 ~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~--t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~ 273 (537)
+++++|++|+|||||++.+.+..+ ....++.|. ....+.+++ ...+.+||++|++.+...++.++..
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~--------- 72 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRG--------- 72 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcC---------
Confidence 689999999999999999998766 445677773 334556655 4688999999998777666665554
Q ss_pred CccceeeEEee-cCcccccCCccccc
Q psy16304 274 DSRTCQVYLIM-CGVHQVSGIPDELT 298 (537)
Q Consensus 274 ~~~~~il~v~D-s~~~~~~~l~~~l~ 298 (537)
++++++++| ++...+.++..++.
T Consensus 73 --~~~~i~v~d~~~~~s~~~~~~~~~ 96 (161)
T cd04113 73 --AAGALLVYDITNRTSFEALPTWLS 96 (161)
T ss_pred --CCEEEEEEECCCHHHHHHHHHHHH
Confidence 889999999 66665555554443
No 465
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=98.80 E-value=1.3e-08 Score=95.73 Aligned_cols=108 Identities=17% Similarity=0.250 Sum_probs=78.1
Q ss_pred CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee-EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304 197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP 273 (537)
Q Consensus 197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~-~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~ 273 (537)
.+++++|..|+|||||++.+.+..+ ..+.||.|... ..+.+++ .+.+.+||++|+.+++.++..++..
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~--------- 73 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRC--------- 73 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhc---------
Confidence 4799999999999999999998777 45678887333 3466665 4678999999999888887777666
Q ss_pred CccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEEec
Q psy16304 274 DSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVLG 317 (537)
Q Consensus 274 ~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llG 317 (537)
++++++++| ++...+..+.++...+.... .....++.++|
T Consensus 74 --~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~--~~~~~piilvg 114 (172)
T cd04141 74 --GEGFIICYSVTDRHSFQEASEFKKLITRVR--LTEDIPLVLVG 114 (172)
T ss_pred --CCEEEEEEECCchhHHHHHHHHHHHHHHhc--CCCCCCEEEEE
Confidence 899999999 77776666654433332221 11245666665
No 466
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=98.80 E-value=1e-08 Score=97.46 Aligned_cols=86 Identities=30% Similarity=0.632 Sum_probs=67.8
Q ss_pred CCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEEC----CcEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304 196 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYG----NKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG 271 (537)
Q Consensus 196 G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~----g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l 271 (537)
-.+++++|++|||||||++.+.+..+....||.|++...+.+. .++.+.+||++|++.++..|..++..
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~------- 75 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRC------- 75 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhcc-------
Confidence 4679999999999999999999887755678888776665552 25889999999998888777776655
Q ss_pred CCCccceeeEEee-cCcccccC
Q psy16304 272 RPDSRTCQVYLIM-CGVHQVSG 292 (537)
Q Consensus 272 ~~~~~~~il~v~D-s~~~~~~~ 292 (537)
++++++++| ++...+..
T Consensus 76 ----~d~ii~v~D~~~~~~~~~ 93 (183)
T cd04152 76 ----TDGIVFVVDSVDVERMEE 93 (183)
T ss_pred ----CCEEEEEEECCCHHHHHH
Confidence 899999999 55444433
No 467
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=98.80 E-value=1.1e-08 Score=94.20 Aligned_cols=107 Identities=20% Similarity=0.401 Sum_probs=79.1
Q ss_pred eEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee--EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304 198 PILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR--ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP 273 (537)
Q Consensus 198 ~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~--~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~ 273 (537)
||+++|++|+|||||++.+.+..+ ..+.||.|... ..+.+++ .+.+.+||++|++.+.......+..
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~--------- 71 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRN--------- 71 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTT---------
T ss_pred CEEEECCCCCCHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccccc---------
Confidence 689999999999999999998776 55778887443 4455554 5789999999998777665555555
Q ss_pred CccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEEecc
Q psy16304 274 DSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVLGL 318 (537)
Q Consensus 274 ~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl 318 (537)
++++++++| ++.+.++.+..++..+.... ....++.++|.
T Consensus 72 --~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~---~~~~~iivvg~ 112 (162)
T PF00071_consen 72 --SDAIIIVFDVTDEESFENLKKWLEEIQKYK---PEDIPIIVVGN 112 (162)
T ss_dssp --ESEEEEEEETTBHHHHHTHHHHHHHHHHHS---TTTSEEEEEEE
T ss_pred --cccccccccccccccccccccccccccccc---cccccceeeec
Confidence 889999999 77777777776665543322 13456777763
No 468
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=98.80 E-value=1e-08 Score=98.88 Aligned_cols=91 Identities=23% Similarity=0.358 Sum_probs=69.6
Q ss_pred CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee--eEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304 197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN--RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR 272 (537)
Q Consensus 197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t--~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~ 272 (537)
.+|+++|+.|+|||||++.+.+..+ ..+.||.|+. ...+.++| .+.+.+||++|++.++..+..++..
T Consensus 7 ~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~-------- 78 (199)
T cd04110 7 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRG-------- 78 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCC--------
Confidence 5799999999999999999998877 3467888843 34555555 4678999999998887777666655
Q ss_pred CCccceeeEEee-cCcccccCCccccc
Q psy16304 273 PDSRTCQVYLIM-CGVHQVSGIPDELT 298 (537)
Q Consensus 273 ~~~~~~il~v~D-s~~~~~~~l~~~l~ 298 (537)
++++++++| ++.+.++.+..++.
T Consensus 79 ---a~~iilv~D~~~~~s~~~~~~~~~ 102 (199)
T cd04110 79 ---THGVIVVYDVTNGESFVNVKRWLQ 102 (199)
T ss_pred ---CcEEEEEEECCCHHHHHHHHHHHH
Confidence 788999999 66665555554443
No 469
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=98.80 E-value=1.1e-08 Score=96.14 Aligned_cols=90 Identities=21% Similarity=0.335 Sum_probs=69.8
Q ss_pred eEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee--EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304 198 PILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR--ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP 273 (537)
Q Consensus 198 ~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~--~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~ 273 (537)
+++++|..|+|||||++.+.+..| ..+.||.|... ..+.++| ...+.+||++|++++..++..++..
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~--------- 72 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRG--------- 72 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcC---------
Confidence 689999999999999999999877 56789988443 4455555 5689999999998887776666655
Q ss_pred CccceeeEEee-cCcccccCCccccc
Q psy16304 274 DSRTCQVYLIM-CGVHQVSGIPDELT 298 (537)
Q Consensus 274 ~~~~~il~v~D-s~~~~~~~l~~~l~ 298 (537)
++++++++| ++...+..+..++.
T Consensus 73 --ad~~ilv~d~~~~~s~~~~~~~~~ 96 (170)
T cd04108 73 --AQAIIIVFDLTDVASLEHTRQWLE 96 (170)
T ss_pred --CCEEEEEEECcCHHHHHHHHHHHH
Confidence 899999999 56555555544443
No 470
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.79 E-value=1.5e-09 Score=104.91 Aligned_cols=77 Identities=6% Similarity=-0.172 Sum_probs=49.4
Q ss_pred cchhhhhcCCCceeeecccccccceec--cCCceEEEEEe--cCchhhH-----HHHHHHHHhc--CCEEEEEEeCCCcc
Q psy16304 324 SSIIKRILGEPIISLVPTVGFNRARVE--YGNKYEVFLYD--LGGSEDF-----RTIWKQYLGT--VSQTLLVSHSLSGR 392 (537)
Q Consensus 324 s~li~~LSgG~rqrvs~ti~la~all~--~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~--~~~vIlVvdshd~~ 392 (537)
...+.+||+||++++ ++++++.. ..+ |+++++| |+|++.. ..++..+.+. ...+++++ +|+..
T Consensus 104 ~~~~~~lS~G~k~r~----~ia~al~~~~~~~-p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~-th~~~ 177 (198)
T cd03276 104 VRDVKTLSGGERSFS----TVCLLLSLWEVME-SPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFIT-PQDIS 177 (198)
T ss_pred CCcccccChhHHHHH----HHHHHHHHhcccC-CCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEE-CCccc
Confidence 445789999999999 88887741 133 8999999 8888322 2222333332 22456666 78888
Q ss_pred hhhhhh-hhhhcCCc
Q psy16304 393 PDDRCQ-VYLMSCNC 406 (537)
Q Consensus 393 ~~~~~~-i~ll~~G~ 406 (537)
.....+ +.++..++
T Consensus 178 ~i~~~d~v~~~~~~~ 192 (198)
T cd03276 178 GLASSDDVKVFRMKD 192 (198)
T ss_pred ccccccceeEEEecC
Confidence 776654 55555443
No 471
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=98.79 E-value=5.8e-09 Score=100.87 Aligned_cols=74 Identities=7% Similarity=0.022 Sum_probs=45.2
Q ss_pred hhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH--HHH----HHHHHhcCCEEEEEEeCCCcchhhhhh
Q psy16304 327 IKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTI----WKQYLGTVSQTLLVSHSLSGRPDDRCQ 398 (537)
Q Consensus 327 i~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l----~~~~~~~~~~vIlVvdshd~~~~~~~~ 398 (537)
+..||+|++++. .++.+. . + |+++++| ++|++.. ..+ ++.+.+ .+.+++++ +|+......++
T Consensus 89 ~s~fs~g~~~~~----~i~~~~-~-~--p~llllDEp~~glD~~~~~~i~~~~l~~l~~-~~~~vi~~-tH~~~l~~~~d 158 (200)
T cd03280 89 LSTFSSHMKNIA----RILQHA-D-P--DSLVLLDELGSGTDPVEGAALAIAILEELLE-RGALVIAT-THYGELKAYAY 158 (200)
T ss_pred cchHHHHHHHHH----HHHHhC-C-C--CcEEEEcCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEE-CCHHHHHHHHh
Confidence 457999998887 555443 2 4 8999999 7787322 222 233333 34455555 77654433333
Q ss_pred -hhhhcCCcEEEE
Q psy16304 399 -VYLMSCNCQVYL 410 (537)
Q Consensus 399 -i~ll~~G~ii~~ 410 (537)
+..+++|.+...
T Consensus 159 ~~~~l~~g~l~~~ 171 (200)
T cd03280 159 KREGVENASMEFD 171 (200)
T ss_pred cCCCeEEEEEEEe
Confidence 777778887654
No 472
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=98.78 E-value=1.4e-08 Score=93.85 Aligned_cols=88 Identities=20% Similarity=0.291 Sum_probs=64.8
Q ss_pred eEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee-eeeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCCCC
Q psy16304 198 PILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG-FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPD 274 (537)
Q Consensus 198 ~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G-~t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~ 274 (537)
+|+++|++|||||||++.+.+..+ ..+.|+.+ .....+.+++ .+.+.+||++|++++...+..++..
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~---------- 71 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRT---------- 71 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhh----------
Confidence 689999999999999999998766 34556665 2234455554 4678899999999887777666655
Q ss_pred ccceeeEEee-cCcccccCCccc
Q psy16304 275 SRTCQVYLIM-CGVHQVSGIPDE 296 (537)
Q Consensus 275 ~~~~il~v~D-s~~~~~~~l~~~ 296 (537)
++++++++| ++.+.++.+..+
T Consensus 72 -~~~~i~v~d~~~~~s~~~~~~~ 93 (164)
T smart00173 72 -GEGFLLVYSITDRQSFEEIKKF 93 (164)
T ss_pred -CCEEEEEEECCCHHHHHHHHHH
Confidence 889999999 555554444443
No 473
>KOG0086|consensus
Probab=98.78 E-value=8.9e-09 Score=92.90 Aligned_cols=107 Identities=20% Similarity=0.375 Sum_probs=82.7
Q ss_pred CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee--eeeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304 197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR 272 (537)
Q Consensus 197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G--~t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~ 272 (537)
.++.++|+.|.|||+||..+....+ -....|.| |-..-|.++| .+++++||++|++++|...+.++..
T Consensus 10 fKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRG-------- 81 (214)
T KOG0086|consen 10 FKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRG-------- 81 (214)
T ss_pred heeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhcc--------
Confidence 5689999999999999999987766 34567888 4445566665 5789999999999999999999888
Q ss_pred CCccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEEec
Q psy16304 273 PDSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVLG 317 (537)
Q Consensus 273 ~~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llG 317 (537)
+.+.++|+| ++++.++.+..|+.... ..+.....+.++|
T Consensus 82 ---AAGAlLVYD~TsrdsfnaLtnWL~DaR---~lAs~nIvviL~G 121 (214)
T KOG0086|consen 82 ---AAGALLVYDITSRDSFNALTNWLTDAR---TLASPNIVVILCG 121 (214)
T ss_pred ---ccceEEEEeccchhhHHHHHHHHHHHH---hhCCCcEEEEEeC
Confidence 889999999 88888877776655433 2333445555655
No 474
>PLN00023 GTP-binding protein; Provisional
Probab=98.78 E-value=1.3e-08 Score=104.61 Aligned_cols=96 Identities=19% Similarity=0.328 Sum_probs=76.1
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee--EEEEECC--------------cEEEEEeecCCCchhhHH
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR--ARVEYGN--------------KYEVFLYDLGGSEDFRTI 257 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~--~~i~i~g--------------~~~i~~~D~~G~~~~r~~ 257 (537)
...+|+|+|.+|+|||||++.+.+..| ..+.||.|.+. ..+.+++ .+.+.+||++|++.++.+
T Consensus 20 ~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrsL 99 (334)
T PLN00023 20 GQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKDC 99 (334)
T ss_pred cceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhhh
Confidence 457899999999999999999998877 45679999543 4555531 367999999999999888
Q ss_pred HHhhhhccccCCCCCCCccceeeEEee-cCcccccCCcccccccC
Q psy16304 258 WKQYLGTVSQTPLGRPDSRTCQVYLIM-CGVHQVSGIPDELTSAT 301 (537)
Q Consensus 258 ~~~~i~~v~Q~~~l~~~~~~~il~v~D-s~~~~~~~l~~~l~~~~ 301 (537)
+..++.. ++++++|+| ++...++++..|+..+.
T Consensus 100 ~~~yyr~-----------AdgiILVyDITdr~SFenL~kWl~eI~ 133 (334)
T PLN00023 100 RSLFYSQ-----------INGVIFVHDLSQRRTKTSLQKWASEVA 133 (334)
T ss_pred hHHhccC-----------CCEEEEEEeCCCHHHHHHHHHHHHHHH
Confidence 8777666 899999999 77777777766665543
No 475
>PLN03110 Rab GTPase; Provisional
Probab=98.78 E-value=1.8e-08 Score=98.63 Aligned_cols=93 Identities=17% Similarity=0.292 Sum_probs=71.1
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee--eEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCC
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN--RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL 270 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t--~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~ 270 (537)
...+++++|+.|+|||||++.+.+..+ ..+.||.|.. ...+.+++ .+.+.+||++|++++...+..++..
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~------ 84 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRG------ 84 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCC------
Confidence 346899999999999999999998876 3567888844 45566665 4689999999998887776666655
Q ss_pred CCCCccceeeEEee-cCcccccCCccccc
Q psy16304 271 GRPDSRTCQVYLIM-CGVHQVSGIPDELT 298 (537)
Q Consensus 271 l~~~~~~~il~v~D-s~~~~~~~l~~~l~ 298 (537)
++++++++| ++...++.+..++.
T Consensus 85 -----~~~~ilv~d~~~~~s~~~~~~~~~ 108 (216)
T PLN03110 85 -----AVGALLVYDITKRQTFDNVQRWLR 108 (216)
T ss_pred -----CCEEEEEEECCChHHHHHHHHHHH
Confidence 889999999 66655555544443
No 476
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=98.78 E-value=1.6e-08 Score=96.53 Aligned_cols=90 Identities=17% Similarity=0.285 Sum_probs=66.1
Q ss_pred eEEEEeCCCCcHHHHHHHHhCCCCc--cccCceee--eeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304 198 PILVLGLDNAGKSSIIKRILGEPII--SLVPTVGF--NRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR 272 (537)
Q Consensus 198 ~vgLVG~NGAGKSTLL~~L~G~~~~--~~~Pt~G~--t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~ 272 (537)
+|+++|++|+|||||++.+.+..+. .+.||.|. ....+.+++ .+.+.+||++|+.+++.++..++..
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~-------- 73 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRG-------- 73 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCC--------
Confidence 6899999999999999999987773 37788883 334566665 3567799999998776555544443
Q ss_pred CCccceeeEEee-cCcccccCCccccc
Q psy16304 273 PDSRTCQVYLIM-CGVHQVSGIPDELT 298 (537)
Q Consensus 273 ~~~~~~il~v~D-s~~~~~~~l~~~l~ 298 (537)
++++++++| ++...++.+..++.
T Consensus 74 ---~d~iilv~d~~~~~s~~~~~~~~~ 97 (193)
T cd04118 74 ---AKAAIVCYDLTDSSSFERAKFWVK 97 (193)
T ss_pred ---CCEEEEEEECCCHHHHHHHHHHHH
Confidence 889999999 66555544444443
No 477
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=98.78 E-value=1e-08 Score=95.78 Aligned_cols=105 Identities=19% Similarity=0.389 Sum_probs=72.3
Q ss_pred eEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeeeEEEEE--CC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304 198 PILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNRARVEY--GN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP 273 (537)
Q Consensus 198 ~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~~~i~i--~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~ 273 (537)
+++++|+.|||||||++.+....+ ..+.||.|.....+.+ ++ .+.+.+||++|++.+...+..++..
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~--------- 72 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIG--------- 72 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcC---------
Confidence 689999999999999999986655 4577888865544443 22 4789999999997765444444333
Q ss_pred CccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEEec
Q psy16304 274 DSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVLG 317 (537)
Q Consensus 274 ~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llG 317 (537)
++++++++| ++.+.+..+..++..+.... ...++.++|
T Consensus 73 --~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~----~~~piiiv~ 111 (166)
T cd00877 73 --GQCAIIMFDVTSRVTYKNVPNWHRDLVRVC----GNIPIVLCG 111 (166)
T ss_pred --CCEEEEEEECCCHHHHHHHHHHHHHHHHhC----CCCcEEEEE
Confidence 899999999 66666665555444433221 145555554
No 478
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=98.78 E-value=1.9e-08 Score=94.08 Aligned_cols=92 Identities=23% Similarity=0.412 Sum_probs=67.2
Q ss_pred CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee--eEEEEECC-cEEEEEeecCCCchhh-HHHHhhhhccccCCCC
Q psy16304 197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN--RARVEYGN-KYEVFLYDLGGSEDFR-TIWKQYLGTVSQTPLG 271 (537)
Q Consensus 197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t--~~~i~i~g-~~~i~~~D~~G~~~~r-~~~~~~i~~v~Q~~~l 271 (537)
.+++++|++|+|||||++.+.+..+ ..+.|+.|+. ...+.+++ .+.+.+||++|+++++ .++..++..
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~------- 75 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRN------- 75 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcC-------
Confidence 4799999999999999999998766 3466777733 34555665 4789999999998776 344444433
Q ss_pred CCCccceeeEEee-cCcccccCCcccccc
Q psy16304 272 RPDSRTCQVYLIM-CGVHQVSGIPDELTS 299 (537)
Q Consensus 272 ~~~~~~~il~v~D-s~~~~~~~l~~~l~~ 299 (537)
++++++++| ++.+.+..+..++..
T Consensus 76 ----~d~~i~v~d~~~~~s~~~~~~~~~~ 100 (170)
T cd04115 76 ----VHAVVFVYDVTNMASFHSLPSWIEE 100 (170)
T ss_pred ----CCEEEEEEECCCHHHHHhHHHHHHH
Confidence 889999999 666666655554433
No 479
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=98.78 E-value=1.5e-08 Score=95.19 Aligned_cols=93 Identities=19% Similarity=0.378 Sum_probs=69.7
Q ss_pred CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee--eEEEEEC-----------CcEEEEEeecCCCchhhHHHHhhh
Q psy16304 197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN--RARVEYG-----------NKYEVFLYDLGGSEDFRTIWKQYL 262 (537)
Q Consensus 197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t--~~~i~i~-----------g~~~i~~~D~~G~~~~r~~~~~~i 262 (537)
.+++++|++|+|||||++.+.+..+ ..+.||.|.. ...+.+. ..+.+.+||++|+++++..+..++
T Consensus 5 ~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~ 84 (180)
T cd04127 5 IKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTAFF 84 (180)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHHHh
Confidence 5799999999999999999998766 4457777733 2334432 247889999999988887776666
Q ss_pred hccccCCCCCCCccceeeEEee-cCcccccCCccccccc
Q psy16304 263 GTVSQTPLGRPDSRTCQVYLIM-CGVHQVSGIPDELTSA 300 (537)
Q Consensus 263 ~~v~Q~~~l~~~~~~~il~v~D-s~~~~~~~l~~~l~~~ 300 (537)
.. ++++++++| ++.+.+..+..++..+
T Consensus 85 ~~-----------~~~~i~v~d~~~~~s~~~~~~~~~~i 112 (180)
T cd04127 85 RD-----------AMGFLLIFDLTNEQSFLNVRNWMSQL 112 (180)
T ss_pred CC-----------CCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 65 899999999 6666666665554433
No 480
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=98.77 E-value=1.6e-08 Score=92.98 Aligned_cols=89 Identities=22% Similarity=0.363 Sum_probs=67.7
Q ss_pred eEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee--EEEEEC--C-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304 198 PILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR--ARVEYG--N-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG 271 (537)
Q Consensus 198 ~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~--~~i~i~--g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l 271 (537)
+++++|++|+|||||++.+.+..+ ..+.|+.|... ..+.+. + .+++.+||++|+++++..+..++..
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~------- 74 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRG------- 74 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcC-------
Confidence 689999999999999999998766 45678888443 344444 2 5789999999998888777766665
Q ss_pred CCCccceeeEEee-cCcccccCCcccc
Q psy16304 272 RPDSRTCQVYLIM-CGVHQVSGIPDEL 297 (537)
Q Consensus 272 ~~~~~~~il~v~D-s~~~~~~~l~~~l 297 (537)
++++++++| ++.+.+..+..++
T Consensus 75 ----~~~~v~v~d~~~~~s~~~l~~~~ 97 (162)
T cd04106 75 ----AQACILVFSTTDRESFEAIESWK 97 (162)
T ss_pred ----CCEEEEEEECCCHHHHHHHHHHH
Confidence 889999999 6665555554433
No 481
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.77 E-value=1.6e-08 Score=93.77 Aligned_cols=94 Identities=19% Similarity=0.339 Sum_probs=69.5
Q ss_pred CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceee--eeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304 196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGF--NRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG 271 (537)
Q Consensus 196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~--t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l 271 (537)
..+++++|+.|||||||++.+.+..+ ..+.++.|. ....+.+++ .+.+.+||++|++.+...+...+..
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~------- 75 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRS------- 75 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhcc-------
Confidence 36799999999999999999987665 345677773 345566665 3588999999998887666666655
Q ss_pred CCCccceeeEEee-cCcccccCCccccccc
Q psy16304 272 RPDSRTCQVYLIM-CGVHQVSGIPDELTSA 300 (537)
Q Consensus 272 ~~~~~~~il~v~D-s~~~~~~~l~~~l~~~ 300 (537)
++++++++| ++...+..+..++..+
T Consensus 76 ----~d~~llv~d~~~~~s~~~~~~~~~~i 101 (165)
T cd01864 76 ----ANGAIIAYDITRRSSFESVPHWIEEV 101 (165)
T ss_pred ----CCEEEEEEECcCHHHHHhHHHHHHHH
Confidence 899999999 6655555555544433
No 482
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=98.77 E-value=1.4e-08 Score=96.28 Aligned_cols=105 Identities=19% Similarity=0.257 Sum_probs=77.5
Q ss_pred eEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee-EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCCCC
Q psy16304 198 PILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPD 274 (537)
Q Consensus 198 ~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~-~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~ 274 (537)
+++++|..|+|||+|+..+....| ..+.||.|... ..+.+++ .+++.+||++|+++++.++..++..
T Consensus 3 kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~---------- 72 (176)
T cd04133 3 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRG---------- 72 (176)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCC----------
Confidence 689999999999999999998888 46789988332 3455665 4788999999999887666555555
Q ss_pred ccceeeEEee-cCcccccCC-cccccccCcCCccccCCccEEEec
Q psy16304 275 SRTCQVYLIM-CGVHQVSGI-PDELTSATHLPLVDFRSVPILVLG 317 (537)
Q Consensus 275 ~~~~il~v~D-s~~~~~~~l-~~~l~~~~~l~~~~~~~~~L~llG 317 (537)
++++++++| ++++.++++ ..|+..+... . ...++.++|
T Consensus 73 -a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~---~-~~~piilvg 112 (176)
T cd04133 73 -ADVFVLAFSLISRASYENVLKKWVPELRHY---A-PNVPIVLVG 112 (176)
T ss_pred -CcEEEEEEEcCCHHHHHHHHHHHHHHHHHh---C-CCCCEEEEE
Confidence 899999999 777777765 3444433221 1 245677776
No 483
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.77 E-value=2.3e-09 Score=129.94 Aligned_cols=98 Identities=13% Similarity=0.128 Sum_probs=67.4
Q ss_pred EEEeccCccCccchhhhhcCCCceeeecccccccceec-cCCceEEEEEe--cCchh-----hHHHHHHHHHhcCCEEEE
Q psy16304 313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVE-YGNKYEVFLYD--LGGSE-----DFRTIWKQYLGTVSQTLL 384 (537)
Q Consensus 313 L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~-~~e~p~lllLD--T~Gl~-----~~~~l~~~~~~~~~~vIl 384 (537)
+..+|+........+.+|||||+||+ .++++++. ..+ |++++|| |+|++ .+..++..+.+. ..+|+
T Consensus 793 L~~vGL~~l~l~q~~~tLSGGE~QRV----~LAraL~~~~~~-P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~-G~TVI 866 (1809)
T PRK00635 793 LCSLGLDYLPLGRPLSSLSGGEIQRL----KLAYELLAPSKK-PTLYVLDEPTTGLHTHDIKALIYVLQSLTHQ-GHTVV 866 (1809)
T ss_pred HHHcCCcchhhcCccccCCHHHHHHH----HHHHHHhhcCCC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEE
Confidence 34567765422445889999999999 99999973 123 8999999 99993 222333444433 34566
Q ss_pred EEeCCCcchhhhhh-hhhhc------CCcEEEEecccchh
Q psy16304 385 VSHSLSGRPDDRCQ-VYLMS------CNCQVYLISAKNLS 417 (537)
Q Consensus 385 Vvdshd~~~~~~~~-i~ll~------~G~ii~~g~nkdl~ 417 (537)
++ +|+++....++ ++.|. .|+++..|+++++.
T Consensus 867 iI-sHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~ 905 (1809)
T PRK00635 867 II-EHNMHVVKVADYVLELGPEGGNLGGYLLASCSPEELI 905 (1809)
T ss_pred EE-eCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCHHHHH
Confidence 66 78888775444 66774 68899999888764
No 484
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=98.76 E-value=1.7e-08 Score=93.51 Aligned_cols=89 Identities=18% Similarity=0.300 Sum_probs=65.0
Q ss_pred eEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee--eEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304 198 PILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN--RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP 273 (537)
Q Consensus 198 ~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t--~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~ 273 (537)
+++++|.+|+|||||++.+.+..+ ....++.|.+ ...+.+++ .+.+.+||++|++.++..+..++..
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~--------- 72 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHK--------- 72 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCC---------
Confidence 689999999999999999988766 3345565533 23444554 4688999999999888777766665
Q ss_pred CccceeeEEee-cCcccccCCcccc
Q psy16304 274 DSRTCQVYLIM-CGVHQVSGIPDEL 297 (537)
Q Consensus 274 ~~~~~il~v~D-s~~~~~~~l~~~l 297 (537)
++++++++| ++...+..+..++
T Consensus 73 --~d~~i~v~d~~~~~s~~~~~~~~ 95 (161)
T cd04124 73 --AHACILVFDVTRKITYKNLSKWY 95 (161)
T ss_pred --CCEEEEEEECCCHHHHHHHHHHH
Confidence 899999999 5555444444443
No 485
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=98.76 E-value=3.1e-08 Score=91.27 Aligned_cols=78 Identities=36% Similarity=0.724 Sum_probs=64.7
Q ss_pred eEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccc
Q psy16304 198 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRT 277 (537)
Q Consensus 198 ~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~ 277 (537)
+++|+|++|+|||||++.+....+....||.|++...+.+.+ ..+.+||++|+..++..++.++.. ++
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~-----------~~ 68 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVETVTYKN-LKFQVWDLGGQTSIRPYWRCYYSN-----------TD 68 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCeEEEEECC-EEEEEEECCCCHHHHHHHHHHhcC-----------CC
Confidence 589999999999999999987766556788887766676664 899999999998888777776665 89
Q ss_pred eeeEEee-cCc
Q psy16304 278 CQVYLIM-CGV 287 (537)
Q Consensus 278 ~il~v~D-s~~ 287 (537)
++++++| ++.
T Consensus 69 ~ii~v~d~~~~ 79 (158)
T cd04151 69 AIIYVVDSTDR 79 (158)
T ss_pred EEEEEEECCCH
Confidence 9999999 444
No 486
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=98.76 E-value=1.8e-08 Score=93.40 Aligned_cols=79 Identities=34% Similarity=0.671 Sum_probs=61.3
Q ss_pred eEEEEeCCCCcHHHHHHHHhCCC-------CccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCC
Q psy16304 198 PILVLGLDNAGKSSIIKRILGEP-------IISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL 270 (537)
Q Consensus 198 ~vgLVG~NGAGKSTLL~~L~G~~-------~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~ 270 (537)
+++++|++|+|||||++.|++.. ...+.||.|.....+.+++ ..+.+||++|+..+...+...+..
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~Dt~G~~~~~~~~~~~~~~------ 73 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGN-ARLKFWDLGGQESLRSLWDKYYAE------ 73 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECC-EEEEEEECCCChhhHHHHHHHhCC------
Confidence 47899999999999999998642 1234567776666777775 999999999998887766666555
Q ss_pred CCCCccceeeEEee-cCcc
Q psy16304 271 GRPDSRTCQVYLIM-CGVH 288 (537)
Q Consensus 271 l~~~~~~~il~v~D-s~~~ 288 (537)
++++++++| ++.+
T Consensus 74 -----~~~~v~vvd~~~~~ 87 (167)
T cd04160 74 -----CHAIIYVIDSTDRE 87 (167)
T ss_pred -----CCEEEEEEECchHH
Confidence 889999999 4443
No 487
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.76 E-value=2.1e-08 Score=95.92 Aligned_cols=90 Identities=22% Similarity=0.383 Sum_probs=66.4
Q ss_pred eEEEEeCCCCcHHHHHHHHhCCCCc--cccCceeeee--EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304 198 PILVLGLDNAGKSSIIKRILGEPII--SLVPTVGFNR--ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR 272 (537)
Q Consensus 198 ~vgLVG~NGAGKSTLL~~L~G~~~~--~~~Pt~G~t~--~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~ 272 (537)
+++|+|+.|||||||++.+.+..+. .+.|+.|.+. ..+.+++ .+.+.+||++|+.++...+..++..
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~-------- 73 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRD-------- 73 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccC--------
Confidence 6899999999999999999987763 4567777333 3456665 4788999999998777666555544
Q ss_pred CCccceeeEEee-cCcccccCCccccc
Q psy16304 273 PDSRTCQVYLIM-CGVHQVSGIPDELT 298 (537)
Q Consensus 273 ~~~~~~il~v~D-s~~~~~~~l~~~l~ 298 (537)
++++++++| ++.+.++++..++.
T Consensus 74 ---ad~~i~v~D~~~~~s~~~~~~~~~ 97 (191)
T cd04112 74 ---AHALLLLYDITNKASFDNIRAWLT 97 (191)
T ss_pred ---CCEEEEEEECCCHHHHHHHHHHHH
Confidence 889999999 66555555544443
No 488
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=98.75 E-value=1.6e-08 Score=99.42 Aligned_cols=88 Identities=23% Similarity=0.389 Sum_probs=69.1
Q ss_pred eEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccc
Q psy16304 198 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRT 277 (537)
Q Consensus 198 ~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~ 277 (537)
+++++|.+|+|||||++.+.+..|..+.||.|.......+. .+.+.+||++|++.++.++..++.. ++
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~~~~~~~~~-~~~l~iwDt~G~e~~~~l~~~~~~~-----------ad 69 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQWG-PYNISIWDTAGREQFHGLGSMYCRG-----------AA 69 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCCccceEEEEEEee-EEEEEEEeCCCcccchhhHHHHhcc-----------CC
Confidence 68999999999999999999988866678888443333443 4889999999999888777766655 89
Q ss_pred eeeEEee-cCcccccCCcccc
Q psy16304 278 CQVYLIM-CGVHQVSGIPDEL 297 (537)
Q Consensus 278 ~il~v~D-s~~~~~~~l~~~l 297 (537)
++++++| ++...+.++..++
T Consensus 70 ~~IlV~Dvt~~~Sf~~l~~~~ 90 (220)
T cd04126 70 AVILTYDVSNVQSLEELEDRF 90 (220)
T ss_pred EEEEEEECCCHHHHHHHHHHH
Confidence 9999999 7766666655433
No 489
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=98.75 E-value=2.1e-08 Score=92.85 Aligned_cols=92 Identities=20% Similarity=0.285 Sum_probs=68.1
Q ss_pred CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee-eEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304 197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN-RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP 273 (537)
Q Consensus 197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t-~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~ 273 (537)
.+++++|.+|||||||++.+....+ ..+.||.|.+ ...+.+++ .+.+.+||++|++.++.++..++..
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~--------- 72 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKN--------- 72 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhh---------
Confidence 4799999999999999999886555 4466777732 23555665 4677899999999888877777666
Q ss_pred CccceeeEEee-cCcccccCCcccccc
Q psy16304 274 DSRTCQVYLIM-CGVHQVSGIPDELTS 299 (537)
Q Consensus 274 ~~~~~il~v~D-s~~~~~~~l~~~l~~ 299 (537)
++++++++| ++...++.+..++..
T Consensus 73 --~d~~ilv~d~~~~~s~~~~~~~~~~ 97 (164)
T cd04175 73 --GQGFVLVYSITAQSTFNDLQDLREQ 97 (164)
T ss_pred --CCEEEEEEECCCHHHHHHHHHHHHH
Confidence 889999999 655555555444433
No 490
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=98.74 E-value=3e-08 Score=91.56 Aligned_cols=90 Identities=16% Similarity=0.258 Sum_probs=66.2
Q ss_pred eEEEEeCCCCcHHHHHHHHhCC--CC-ccccCceeee--eEEEEEC--CcEEEEEeecCCCchhhHHHHhhhhccccCCC
Q psy16304 198 PILVLGLDNAGKSSIIKRILGE--PI-ISLVPTVGFN--RARVEYG--NKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL 270 (537)
Q Consensus 198 ~vgLVG~NGAGKSTLL~~L~G~--~~-~~~~Pt~G~t--~~~i~i~--g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~ 270 (537)
+++++|+.|||||||++.+.+. .+ ..+.|+.|.. ...+.++ ....+.+||++|+..+..++...+..
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~------ 75 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWES------ 75 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCC------
Confidence 6899999999999999999753 44 4577888843 3344443 25889999999998777666666554
Q ss_pred CCCCccceeeEEee-cCcccccCCccccc
Q psy16304 271 GRPDSRTCQVYLIM-CGVHQVSGIPDELT 298 (537)
Q Consensus 271 l~~~~~~~il~v~D-s~~~~~~~l~~~l~ 298 (537)
++++++++| ++.+.+.++..++.
T Consensus 76 -----~d~ii~v~d~~~~~s~~~~~~~~~ 99 (164)
T cd04101 76 -----PSVFILVYDVSNKASFENCSRWVN 99 (164)
T ss_pred -----CCEEEEEEECcCHHHHHHHHHHHH
Confidence 899999999 66555554444443
No 491
>KOG0092|consensus
Probab=98.74 E-value=2e-08 Score=94.32 Aligned_cols=110 Identities=19% Similarity=0.356 Sum_probs=88.3
Q ss_pred CCccEEEeccCccCccchhhhhcCCCcee-eeccccc--ccceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEE
Q psy16304 309 RSVPILVLGLDNAGKSSIIKRILGEPIIS-LVPTVGF--NRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLL 384 (537)
Q Consensus 309 ~~~~L~llGl~~~gKs~li~~LSgG~rqr-vs~ti~l--a~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIl 384 (537)
...++.+||..++||++++-.+-.|+.-. ..+|++- -...+..++ ..++.||||+|++++..+-+.|++.++++|+
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAiv 83 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIV 83 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEEE
Confidence 35678899999999999999999999433 4677772 222222233 4678899999999999999999999999999
Q ss_pred EEeCCCcchhhhhhhhhhc------CCcEEEEeccc-chhh
Q psy16304 385 VSHSLSGRPDDRCQVYLMS------CNCQVYLISAK-NLSN 418 (537)
Q Consensus 385 Vvdshd~~~~~~~~i~ll~------~G~ii~~g~nk-dl~~ 418 (537)
|+|.++.+++..+..|+.+ .+.++++.+|| ||.+
T Consensus 84 vYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~ 124 (200)
T KOG0092|consen 84 VYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLE 124 (200)
T ss_pred EEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhh
Confidence 9999999999999988865 34577888999 7754
No 492
>PLN03108 Rab family protein; Provisional
Probab=98.74 E-value=2.1e-08 Score=97.62 Aligned_cols=89 Identities=16% Similarity=0.268 Sum_probs=67.3
Q ss_pred CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee--eEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304 197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN--RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR 272 (537)
Q Consensus 197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t--~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~ 272 (537)
.+++|+|++|+|||||++.+++..+ ....|+.|++ ...+.+++ .+.+.+||++|++.+...+..++..
T Consensus 7 ~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~-------- 78 (210)
T PLN03108 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG-------- 78 (210)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcc--------
Confidence 5799999999999999999998876 3456777744 34566665 4678899999998877666665554
Q ss_pred CCccceeeEEee-cCcccccCCccc
Q psy16304 273 PDSRTCQVYLIM-CGVHQVSGIPDE 296 (537)
Q Consensus 273 ~~~~~~il~v~D-s~~~~~~~l~~~ 296 (537)
++++++++| ++...+..+..+
T Consensus 79 ---ad~~vlv~D~~~~~s~~~l~~~ 100 (210)
T PLN03108 79 ---AAGALLVYDITRRETFNHLASW 100 (210)
T ss_pred ---CCEEEEEEECCcHHHHHHHHHH
Confidence 889999999 665555544443
No 493
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=98.74 E-value=2.1e-08 Score=92.31 Aligned_cols=91 Identities=18% Similarity=0.312 Sum_probs=68.3
Q ss_pred CeEEEEeCCCCcHHHHHHHHhCCCCc-cccCcee--eeeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304 197 VPILVLGLDNAGKSSIIKRILGEPII-SLVPTVG--FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR 272 (537)
Q Consensus 197 ~~vgLVG~NGAGKSTLL~~L~G~~~~-~~~Pt~G--~t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~ 272 (537)
.+++++|+.|||||||++.+.+.++. ...|+.| +....+.+++ ++.+.+||++|++++...+..++..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~-------- 73 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRG-------- 73 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhcc--------
Confidence 47899999999999999999998774 3678888 3345666665 5788999999998777666555544
Q ss_pred CCccceeeEEee-cCcccccCCccccc
Q psy16304 273 PDSRTCQVYLIM-CGVHQVSGIPDELT 298 (537)
Q Consensus 273 ~~~~~~il~v~D-s~~~~~~~l~~~l~ 298 (537)
++++++++| ++.+.+.....++.
T Consensus 74 ---~~~~i~v~d~~~~~s~~~~~~~~~ 97 (163)
T cd01860 74 ---AAAAIVVYDITSEESFEKAKSWVK 97 (163)
T ss_pred ---CCEEEEEEECcCHHHHHHHHHHHH
Confidence 889999999 55555554444433
No 494
>PLN03118 Rab family protein; Provisional
Probab=98.73 E-value=3.6e-08 Score=95.83 Aligned_cols=88 Identities=23% Similarity=0.436 Sum_probs=69.6
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeee--EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNR--ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG 271 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~--~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l 271 (537)
...+++++|+.|+|||||++.+++..+..+.|+.|... ..+.+++ .+.+.+||++|++.+..++..++..
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~------- 85 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRN------- 85 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhc-------
Confidence 45789999999999999999999887777788888543 4455654 4688999999999888777776665
Q ss_pred CCCccceeeEEee-cCcccccCC
Q psy16304 272 RPDSRTCQVYLIM-CGVHQVSGI 293 (537)
Q Consensus 272 ~~~~~~~il~v~D-s~~~~~~~l 293 (537)
++++++++| ++.+.+..+
T Consensus 86 ----~d~~vlv~D~~~~~sf~~~ 104 (211)
T PLN03118 86 ----AQGIILVYDVTRRETFTNL 104 (211)
T ss_pred ----CCEEEEEEECCCHHHHHHH
Confidence 899999999 655544443
No 495
>KOG0073|consensus
Probab=98.73 E-value=3.9e-08 Score=90.04 Aligned_cols=114 Identities=32% Similarity=0.654 Sum_probs=94.9
Q ss_pred CccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEeCC
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSHSL 389 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvdsh 389 (537)
+..+.++|++++||+.+++.|++.....++||.++....+..++ ..+.+||.+|+...+..|+.|++..++.|.|+|+.
T Consensus 16 E~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Iktl~~~~-~~L~iwDvGGq~~lr~~W~nYfestdglIwvvDss 94 (185)
T KOG0073|consen 16 EVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIKTLEYKG-YTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSS 94 (185)
T ss_pred eeEEEEEecCCCCchhHHHHhcCCCccccCCccceeeEEEEecc-eEEEEEEcCCcchhHHHHHHhhhccCeEEEEEECc
Confidence 66788999999999999999999999999999999888777677 99999999999999999999999999999999999
Q ss_pred Ccchhhhhh----hhhhc---CCcEEEEeccc-chhhhhccch
Q psy16304 390 SGRPDDRCQ----VYLMS---CNCQVYLISAK-NLSNGFKKSE 424 (537)
Q Consensus 390 d~~~~~~~~----i~ll~---~G~ii~~g~nk-dl~~~~~~~~ 424 (537)
|+..++.+. ..+.+ .|..+....|+ |+...+...+
T Consensus 95 D~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~ 137 (185)
T KOG0073|consen 95 DRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEE 137 (185)
T ss_pred hHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHH
Confidence 988887665 22222 46667777777 6643444333
No 496
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=98.73 E-value=2.6e-08 Score=91.71 Aligned_cols=89 Identities=17% Similarity=0.225 Sum_probs=65.8
Q ss_pred CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceee-eeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304 197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGF-NRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP 273 (537)
Q Consensus 197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~-t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~ 273 (537)
.+++++|++|+|||||++.+.+..+ ..+.|+.+. ....+.+++ ...+.+||++|++++..++..++..
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~--------- 73 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRT--------- 73 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhh---------
Confidence 5799999999999999999988765 445676662 233445555 3678899999999888777776665
Q ss_pred CccceeeEEee-cCcccccCCccc
Q psy16304 274 DSRTCQVYLIM-CGVHQVSGIPDE 296 (537)
Q Consensus 274 ~~~~~il~v~D-s~~~~~~~l~~~ 296 (537)
++++++++| ++...+..+..+
T Consensus 74 --~~~~ilv~d~~~~~s~~~~~~~ 95 (164)
T cd04145 74 --GEGFLLVFSVTDRGSFEEVDKF 95 (164)
T ss_pred --CCEEEEEEECCCHHHHHHHHHH
Confidence 889999999 555544444433
No 497
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.72 E-value=3.2e-08 Score=98.07 Aligned_cols=86 Identities=19% Similarity=0.249 Sum_probs=68.5
Q ss_pred CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee-EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304 196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR 272 (537)
Q Consensus 196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~-~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~ 272 (537)
..++++||+.|+|||+|++.+.+..| ..+.||.|... ..+.+++ .+.+.+||++|++.++.++..++..
T Consensus 13 ~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~-------- 84 (232)
T cd04174 13 RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSD-------- 84 (232)
T ss_pred eEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCC--------
Confidence 46899999999999999999998877 56788888322 2355555 5789999999999888777666655
Q ss_pred CCccceeeEEee-cCcccccC
Q psy16304 273 PDSRTCQVYLIM-CGVHQVSG 292 (537)
Q Consensus 273 ~~~~~~il~v~D-s~~~~~~~ 292 (537)
++++++++| ++.+.+.+
T Consensus 85 ---ad~vIlVyDit~~~Sf~~ 102 (232)
T cd04174 85 ---SDAVLLCFDISRPETVDS 102 (232)
T ss_pred ---CcEEEEEEECCChHHHHH
Confidence 899999999 77776665
No 498
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=98.72 E-value=4e-08 Score=90.38 Aligned_cols=88 Identities=19% Similarity=0.355 Sum_probs=65.0
Q ss_pred eEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee--eEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304 198 PILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN--RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP 273 (537)
Q Consensus 198 ~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t--~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~ 273 (537)
+++++|++|||||||++.+.+..+ ....++.|+. ...+.+++ .+.+.+||++|+..+...+...+..
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~--------- 72 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRG--------- 72 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCC---------
Confidence 689999999999999999998766 4455777743 34556655 3688999999988776665555554
Q ss_pred CccceeeEEee-cCcccccCCccc
Q psy16304 274 DSRTCQVYLIM-CGVHQVSGIPDE 296 (537)
Q Consensus 274 ~~~~~il~v~D-s~~~~~~~l~~~ 296 (537)
++++++++| ++...++.+..+
T Consensus 73 --~d~~ilv~d~~~~~s~~~~~~~ 94 (164)
T smart00175 73 --AVGALLVYDITNRESFENLKNW 94 (164)
T ss_pred --CCEEEEEEECCCHHHHHHHHHH
Confidence 889999999 555555444433
No 499
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=98.70 E-value=3.3e-08 Score=98.93 Aligned_cols=92 Identities=20% Similarity=0.319 Sum_probs=68.3
Q ss_pred eEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee-eeeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCCCC
Q psy16304 198 PILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG-FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPD 274 (537)
Q Consensus 198 ~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G-~t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~ 274 (537)
+++++|..|+|||||++.+.+.+| ..+.||.+ +....+.+++ .+.+.+||++|++.+..++..++..
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~---------- 71 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILT---------- 71 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhcc----------
Confidence 689999999999999999987766 45678877 4445566665 4678899999998776555544444
Q ss_pred ccceeeEEee-cCcccccCCccccccc
Q psy16304 275 SRTCQVYLIM-CGVHQVSGIPDELTSA 300 (537)
Q Consensus 275 ~~~~il~v~D-s~~~~~~~l~~~l~~~ 300 (537)
++++++++| ++.+.++++..++..+
T Consensus 72 -ad~iIlVfdv~~~~Sf~~i~~~~~~I 97 (247)
T cd04143 72 -GDVFILVFSLDNRESFEEVCRLREQI 97 (247)
T ss_pred -CCEEEEEEeCCCHHHHHHHHHHHHHH
Confidence 789999999 6666665555444333
No 500
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=98.70 E-value=5.6e-08 Score=90.23 Aligned_cols=83 Identities=18% Similarity=0.373 Sum_probs=61.8
Q ss_pred eEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee--eeeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304 198 PILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP 273 (537)
Q Consensus 198 ~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G--~t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~ 273 (537)
+++++|++|||||||++.+.+..+ ....++.| +....+.+.+ .+.+.+||++|+..+...+..++..
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~--------- 72 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRG--------- 72 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcC---------
Confidence 689999999999999999998765 34456666 3344566665 4667899999998777666665554
Q ss_pred CccceeeEEee-cCccccc
Q psy16304 274 DSRTCQVYLIM-CGVHQVS 291 (537)
Q Consensus 274 ~~~~~il~v~D-s~~~~~~ 291 (537)
++++++++| .+...++
T Consensus 73 --~d~~i~v~d~~~~~~~~ 89 (172)
T cd01862 73 --ADCCVLVYDVTNPKSFE 89 (172)
T ss_pred --CCEEEEEEECCCHHHHH
Confidence 889999999 4444333
Done!