Query psy16304
Match_columns 537
No_of_seqs 479 out of 2860
Neff 7.2
Searched_HMMs 29240
Date Fri Aug 16 17:56:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16304.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16304hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fvq_A Fe(3+) IONS import ATP- 99.9 2E-25 6.9E-30 231.9 0.9 213 152-417 4-227 (359)
2 3tui_C Methionine import ATP-b 99.9 5.9E-26 2E-30 236.1 -3.3 219 150-417 22-252 (366)
3 3tif_A Uncharacterized ABC tra 99.9 6E-25 2.1E-29 216.3 0.7 199 186-416 21-232 (235)
4 4g1u_C Hemin import ATP-bindin 99.9 3.9E-25 1.3E-29 221.6 -1.0 212 152-416 11-235 (266)
5 3rlf_A Maltose/maltodextrin im 99.9 4.7E-25 1.6E-29 230.7 -0.7 208 152-417 3-222 (381)
6 2olj_A Amino acid ABC transpor 99.9 4.6E-25 1.6E-29 220.6 -1.3 212 152-417 24-247 (263)
7 1b0u_A Histidine permease; ABC 99.9 2E-25 6.9E-30 223.2 -4.0 219 148-417 2-241 (262)
8 3gfo_A Cobalt import ATP-bindi 99.9 9.2E-25 3.1E-29 219.8 0.3 215 150-417 5-232 (275)
9 3d31_A Sulfate/molybdate ABC t 99.9 1.4E-24 4.7E-29 225.2 0.6 190 188-417 18-216 (348)
10 2pcj_A ABC transporter, lipopr 99.9 1E-24 3.4E-29 213.2 -0.7 208 152-412 4-222 (224)
11 1g6h_A High-affinity branched- 99.9 2.3E-24 8E-29 214.9 0.9 209 152-415 7-239 (257)
12 2yyz_A Sugar ABC transporter, 99.9 2.2E-24 7.6E-29 224.5 0.4 208 152-417 3-222 (359)
13 1oxx_K GLCV, glucose, ABC tran 99.9 1.6E-24 5.5E-29 225.3 -1.3 215 152-417 3-229 (353)
14 1z47_A CYSA, putative ABC-tran 99.9 1.9E-24 6.5E-29 224.5 -1.0 209 151-417 13-234 (355)
15 1v43_A Sugar-binding transport 99.9 3.9E-24 1.3E-28 223.6 1.1 208 152-417 11-230 (372)
16 1vpl_A ABC transporter, ATP-bi 99.9 2.7E-24 9.2E-29 214.3 -0.7 210 151-418 14-235 (256)
17 2it1_A 362AA long hypothetical 99.9 3.3E-24 1.1E-28 223.4 -0.2 208 152-417 3-222 (362)
18 1ji0_A ABC transporter; ATP bi 99.9 1.9E-24 6.6E-29 213.4 -2.9 212 150-416 4-226 (240)
19 1g29_1 MALK, maltose transport 99.9 4.9E-24 1.7E-28 223.0 -1.5 212 152-417 3-228 (372)
20 3nh6_A ATP-binding cassette SU 99.9 1.9E-24 6.5E-29 220.5 -4.9 247 108-418 17-277 (306)
21 3b5x_A Lipid A export ATP-bind 99.9 2.4E-23 8.3E-28 230.4 0.4 265 92-417 291-566 (582)
22 2ixe_A Antigen peptide transpo 99.9 5.5E-23 1.9E-27 206.6 2.6 213 152-417 16-244 (271)
23 2onk_A Molybdate/tungstate ABC 99.9 3.1E-23 1E-27 204.8 0.0 190 188-417 17-215 (240)
24 3b60_A Lipid A export ATP-bind 99.9 2.4E-23 8.2E-28 230.5 -1.9 266 92-418 291-567 (582)
25 2ff7_A Alpha-hemolysin translo 99.8 3.4E-23 1.2E-27 205.3 -1.0 187 187-417 26-231 (247)
26 3qf4_B Uncharacterized ABC tra 99.8 4.3E-23 1.5E-27 229.1 -1.1 264 93-418 304-578 (598)
27 2ihy_A ABC transporter, ATP-bi 99.8 1.1E-23 3.7E-28 212.5 -5.8 212 151-416 20-250 (279)
28 2yz2_A Putative ABC transporte 99.8 1.6E-22 5.6E-27 202.5 2.6 190 187-417 24-226 (266)
29 4a82_A Cystic fibrosis transme 99.8 5.6E-23 1.9E-27 227.3 -1.8 268 92-418 287-564 (578)
30 1sgw_A Putative ABC transporte 99.8 5.8E-23 2E-27 199.3 -1.5 195 149-407 7-210 (214)
31 2qi9_C Vitamin B12 import ATP- 99.8 1.4E-22 4.8E-27 201.1 1.2 185 188-416 18-220 (249)
32 1mv5_A LMRA, multidrug resista 99.8 1.1E-22 3.7E-27 201.2 -0.6 187 188-416 20-224 (243)
33 2yl4_A ATP-binding cassette SU 99.8 9.7E-23 3.3E-27 226.2 -2.4 260 93-417 289-569 (595)
34 2zu0_C Probable ATP-dependent 99.8 1.2E-22 4.2E-27 203.6 -2.0 219 151-416 19-252 (267)
35 3qf4_A ABC transporter, ATP-bi 99.8 9.3E-23 3.2E-27 225.9 -3.8 267 93-418 290-566 (587)
36 2nq2_C Hypothetical ABC transp 99.8 1.6E-22 5.3E-27 201.3 -2.6 196 152-416 4-215 (253)
37 2d2e_A SUFC protein; ABC-ATPas 99.8 4E-22 1.4E-26 197.9 -0.4 211 152-414 3-229 (250)
38 4f4c_A Multidrug resistance pr 99.8 3.5E-22 1.2E-26 239.2 -0.9 270 92-419 362-642 (1321)
39 4f4c_A Multidrug resistance pr 99.8 1.7E-22 5.7E-27 242.0 -4.8 263 97-418 1029-1304(1321)
40 2ghi_A Transport protein; mult 99.8 7.1E-22 2.4E-26 197.3 -0.8 210 151-417 16-241 (260)
41 3gd7_A Fusion complex of cysti 99.8 4.1E-22 1.4E-26 209.6 -3.3 206 152-417 19-241 (390)
42 2pjz_A Hypothetical protein ST 99.8 2.6E-21 8.9E-26 193.4 -0.0 184 187-417 22-214 (263)
43 2cbz_A Multidrug resistance-as 99.8 5E-21 1.7E-25 188.6 0.2 199 152-417 3-216 (237)
44 2pze_A Cystic fibrosis transme 99.8 5.2E-21 1.8E-25 187.4 -0.9 202 152-417 6-217 (229)
45 3g5u_A MCG1178, multidrug resi 99.8 7.7E-21 2.6E-25 227.1 -2.8 265 93-418 335-613 (1284)
46 3g5u_A MCG1178, multidrug resi 99.8 1.9E-20 6.4E-25 223.8 -3.0 261 96-418 981-1258(1284)
47 2bbs_A Cystic fibrosis transme 99.7 1.2E-19 4E-24 183.9 -0.6 180 187-416 55-245 (290)
48 3bk7_A ABC transporter ATP-bin 99.7 2.5E-18 8.6E-23 190.5 -0.9 173 191-417 377-562 (607)
49 3ozx_A RNAse L inhibitor; ATP 99.7 6E-18 2.1E-22 185.1 1.9 177 190-416 288-475 (538)
50 1yqt_A RNAse L inhibitor; ATP- 99.7 2.7E-18 9.4E-23 188.0 -1.0 174 190-417 306-492 (538)
51 3ux8_A Excinuclease ABC, A sub 99.7 5.1E-17 1.7E-21 182.6 6.6 213 185-417 33-297 (670)
52 3j16_B RLI1P; ribosome recycli 99.6 2.3E-17 8E-22 182.6 0.3 179 188-418 365-559 (608)
53 3bk7_A ABC transporter ATP-bin 99.6 4.6E-17 1.6E-21 180.5 0.1 180 188-405 110-304 (607)
54 2iw3_A Elongation factor 3A; a 99.6 2.6E-17 9E-22 189.2 -2.7 94 312-413 883-982 (986)
55 1yqt_A RNAse L inhibitor; ATP- 99.6 8.5E-17 2.9E-21 176.2 -0.5 177 189-404 41-233 (538)
56 3ozx_A RNAse L inhibitor; ATP 99.6 3.4E-16 1.2E-20 171.2 -0.0 83 312-405 122-213 (538)
57 2hjg_A GTP-binding protein ENG 99.5 9.6E-15 3.3E-19 156.0 10.7 209 197-417 4-299 (436)
58 4dcu_A GTP-binding protein ENG 99.5 4.2E-14 1.4E-18 151.8 12.7 210 196-417 23-319 (456)
59 3ux8_A Excinuclease ABC, A sub 99.5 4.9E-16 1.7E-20 174.6 -3.3 97 315-417 529-639 (670)
60 3j16_B RLI1P; ribosome recycli 99.5 8.6E-16 2.9E-20 170.1 -2.3 86 311-406 204-298 (608)
61 2iw3_A Elongation factor 3A; a 99.5 1.9E-15 6.6E-20 173.8 -0.7 176 185-416 450-633 (986)
62 2npi_A Protein CLP1; CLP1-PCF1 99.5 3.2E-15 1.1E-19 160.5 -0.4 182 190-416 132-336 (460)
63 1mky_A Probable GTP-binding pr 99.4 1.2E-12 4.2E-17 139.7 14.8 207 198-417 3-305 (439)
64 3pih_A Uvrabc system protein A 99.4 2.6E-14 8.7E-19 164.2 -3.0 99 313-417 789-901 (916)
65 2v9p_A Replication protein E1; 99.3 8.6E-15 2.9E-19 148.9 -8.0 208 95-416 54-264 (305)
66 2vf7_A UVRA2, excinuclease ABC 99.3 3.7E-13 1.3E-17 153.4 -0.2 98 313-417 714-826 (842)
67 2ygr_A Uvrabc system protein A 99.3 1E-12 3.6E-17 150.8 3.0 98 313-417 847-959 (993)
68 4aby_A DNA repair protein RECN 99.2 1.9E-12 6.5E-17 136.6 3.5 77 327-411 292-381 (415)
69 2r6f_A Excinuclease ABC subuni 99.2 5.5E-13 1.9E-17 152.6 -1.6 98 313-417 829-941 (972)
70 3b85_A Phosphate starvation-in 99.2 7.2E-13 2.5E-17 127.7 -0.9 140 194-395 20-162 (208)
71 1ye8_A Protein THEP1, hypothet 99.2 5.6E-12 1.9E-16 118.4 3.7 75 326-409 73-159 (178)
72 3sop_A Neuronal-specific septi 99.2 5.5E-12 1.9E-16 126.2 3.2 148 197-392 3-153 (270)
73 3b9q_A Chloroplast SRP recepto 99.2 9.9E-12 3.4E-16 126.4 5.0 152 189-386 93-254 (302)
74 1fzq_A ADP-ribosylation factor 99.1 8.9E-11 3E-15 109.2 9.4 89 195-295 15-104 (181)
75 2og2_A Putative signal recogni 99.1 3.7E-11 1.3E-15 124.9 5.8 153 188-386 149-310 (359)
76 1oix_A RAS-related protein RAB 99.1 6.8E-11 2.3E-15 111.2 5.8 149 197-374 30-185 (191)
77 4gp7_A Metallophosphoesterase; 99.1 1.6E-12 5.5E-17 120.9 -5.7 31 189-219 2-32 (171)
78 1f6b_A SAR1; gtpases, N-termin 99.1 1.2E-10 4.2E-15 110.1 7.1 91 195-297 24-115 (198)
79 2f9l_A RAB11B, member RAS onco 99.0 1.3E-10 4.4E-15 109.7 5.7 87 197-294 6-97 (199)
80 1m2o_B GTP-binding protein SAR 99.0 3.8E-10 1.3E-14 105.9 7.8 90 195-296 22-112 (190)
81 2i3b_A HCR-ntpase, human cance 99.0 9.9E-11 3.4E-15 111.0 2.6 29 196-229 1-29 (189)
82 4dkx_A RAS-related protein RAB 99.0 2.9E-10 9.8E-15 109.9 5.8 109 195-317 12-125 (216)
83 1upt_A ARL1, ADP-ribosylation 99.0 6.9E-10 2.3E-14 100.9 7.9 88 195-294 6-94 (171)
84 2b6h_A ADP-ribosylation factor 99.0 6.4E-10 2.2E-14 104.4 7.5 93 192-296 25-118 (192)
85 1zj6_A ADP-ribosylation factor 99.0 5.6E-10 1.9E-14 103.8 6.9 91 194-296 14-105 (187)
86 1r8s_A ADP-ribosylation factor 99.0 5.4E-10 1.9E-14 101.0 6.4 86 198-295 2-88 (164)
87 1ksh_A ARF-like protein 2; sma 99.0 9.5E-10 3.3E-14 101.9 8.1 89 195-295 17-106 (186)
88 2h17_A ADP-ribosylation factor 99.0 6.8E-10 2.3E-14 102.8 6.7 89 195-295 20-109 (181)
89 1moz_A ARL1, ADP-ribosylation 98.9 4.7E-10 1.6E-14 103.5 5.0 90 194-295 16-106 (183)
90 4bas_A ADP-ribosylation factor 98.9 1.4E-09 4.8E-14 101.6 8.1 90 195-296 16-108 (199)
91 2dpy_A FLII, flagellum-specifi 98.9 8.9E-11 3E-15 125.3 -0.4 171 191-416 152-342 (438)
92 1rj9_A FTSY, signal recognitio 98.9 4.9E-10 1.7E-14 113.9 4.7 175 195-414 101-283 (304)
93 2h57_A ADP-ribosylation factor 98.9 9.4E-10 3.2E-14 102.6 6.2 89 195-295 20-111 (190)
94 1tq4_A IIGP1, interferon-induc 98.9 3.1E-11 1E-15 127.7 -4.6 147 198-398 71-244 (413)
95 1znw_A Guanylate kinase, GMP k 98.9 5.6E-12 1.9E-16 120.6 -9.7 29 191-219 15-43 (207)
96 3qf7_A RAD50; ABC-ATPase, ATPa 98.9 6.2E-10 2.1E-14 116.0 5.0 81 323-409 273-364 (365)
97 2x77_A ADP-ribosylation factor 98.9 6.4E-10 2.2E-14 103.5 4.5 89 194-294 20-109 (189)
98 3aez_A Pantothenate kinase; tr 98.9 9.5E-11 3.2E-15 119.7 -1.5 33 193-229 87-119 (312)
99 1z6g_A Guanylate kinase; struc 98.9 2.8E-11 9.5E-16 117.1 -5.2 68 187-273 14-81 (218)
100 1zd9_A ADP-ribosylation factor 98.9 2.8E-09 9.6E-14 99.4 7.9 89 195-295 21-111 (188)
101 2pt7_A CAG-ALFA; ATPase, prote 98.9 6.5E-10 2.2E-14 114.3 3.5 45 187-239 162-206 (330)
102 2hxs_A RAB-26, RAS-related pro 98.9 9.4E-10 3.2E-14 100.8 4.1 92 195-297 5-102 (178)
103 2obl_A ESCN; ATPase, hydrolase 98.9 1.9E-10 6.5E-15 119.1 -0.7 41 191-239 66-106 (347)
104 2iwr_A Centaurin gamma 1; ANK 98.8 2E-09 6.9E-14 98.8 5.4 107 195-317 6-115 (178)
105 3q72_A GTP-binding protein RAD 98.8 2.4E-09 8.3E-14 96.8 5.6 90 197-297 3-95 (166)
106 1e69_A Chromosome segregation 98.8 1.6E-09 5.5E-14 110.8 4.9 80 325-410 215-304 (322)
107 2hup_A RAS-related protein RAB 98.8 4.6E-09 1.6E-13 99.3 7.7 92 196-298 29-125 (201)
108 2ew1_A RAS-related protein RAB 98.8 5.3E-09 1.8E-13 99.3 7.8 92 196-298 26-122 (201)
109 1udx_A The GTP-binding protein 98.8 3E-09 1E-13 112.6 6.1 158 188-398 149-316 (416)
110 1ek0_A Protein (GTP-binding pr 98.8 5.5E-09 1.9E-13 94.4 6.7 88 197-295 4-96 (170)
111 1zbd_A Rabphilin-3A; G protein 98.8 8.3E-09 2.9E-13 97.0 8.1 88 197-295 9-101 (203)
112 2oil_A CATX-8, RAS-related pro 98.8 7.4E-09 2.5E-13 96.6 7.6 91 196-297 25-120 (193)
113 2bme_A RAB4A, RAS-related prot 98.8 9E-09 3.1E-13 95.0 7.8 91 196-297 10-105 (186)
114 1x3s_A RAS-related protein RAB 98.8 8.5E-09 2.9E-13 95.8 7.6 91 196-297 15-110 (195)
115 2fg5_A RAB-22B, RAS-related pr 98.8 6.7E-09 2.3E-13 97.1 6.9 91 196-297 23-118 (192)
116 1wms_A RAB-9, RAB9, RAS-relate 98.8 9.6E-09 3.3E-13 93.9 7.5 90 196-296 7-101 (177)
117 1r2q_A RAS-related protein RAB 98.8 7.9E-09 2.7E-13 93.3 6.7 89 196-295 6-99 (170)
118 2erx_A GTP-binding protein DI- 98.8 1.5E-08 5E-13 91.8 8.4 91 196-297 3-97 (172)
119 1z0j_A RAB-22, RAS-related pro 98.8 7.5E-09 2.6E-13 93.6 6.5 89 196-295 6-99 (170)
120 2yc2_C IFT27, small RAB-relate 98.8 2.2E-09 7.6E-14 100.8 2.8 92 195-297 19-119 (208)
121 2p5s_A RAS and EF-hand domain 98.8 7.6E-09 2.6E-13 97.3 6.4 93 194-297 26-123 (199)
122 2gf9_A RAS-related protein RAB 98.7 8.4E-09 2.9E-13 96.0 6.4 90 197-297 23-117 (189)
123 2g6b_A RAS-related protein RAB 98.7 9.3E-09 3.2E-13 94.2 6.7 91 196-297 10-106 (180)
124 1z0f_A RAB14, member RAS oncog 98.7 1.1E-08 3.8E-13 93.3 7.1 90 196-296 15-109 (179)
125 1z2a_A RAS-related protein RAB 98.7 7.6E-09 2.6E-13 93.4 5.9 89 196-295 5-98 (168)
126 3szr_A Interferon-induced GTP- 98.7 9.2E-09 3.1E-13 114.1 7.6 60 199-271 48-108 (608)
127 1z06_A RAS-related protein RAB 98.7 1.1E-08 3.9E-13 95.0 7.1 91 196-297 20-116 (189)
128 2gf0_A GTP-binding protein DI- 98.7 1.3E-08 4.6E-13 94.9 7.6 92 195-297 7-102 (199)
129 3bc1_A RAS-related protein RAB 98.7 1.3E-08 4.4E-13 94.1 7.4 91 196-297 11-116 (195)
130 1m7b_A RND3/RHOE small GTP-bin 98.7 9.6E-09 3.3E-13 95.3 6.5 88 195-293 6-97 (184)
131 2il1_A RAB12; G-protein, GDP, 98.7 1.1E-08 3.7E-13 95.8 6.9 90 196-296 26-120 (192)
132 1kao_A RAP2A; GTP-binding prot 98.7 1.2E-08 3.9E-13 91.8 6.8 88 196-294 3-94 (167)
133 1u8z_A RAS-related protein RAL 98.7 9.5E-09 3.3E-13 92.5 6.2 88 197-295 5-96 (168)
134 3ihw_A Centg3; RAS, centaurin, 98.7 1.3E-08 4.4E-13 94.9 7.3 90 195-300 19-111 (184)
135 1c1y_A RAS-related protein RAP 98.7 9E-09 3.1E-13 92.8 6.0 90 197-297 4-97 (167)
136 3lvq_E ARF-GAP with SH3 domain 98.7 8.6E-09 2.9E-13 111.4 6.9 91 195-297 321-412 (497)
137 2gj8_A MNME, tRNA modification 98.7 3.4E-08 1.2E-12 91.0 10.0 83 195-289 3-98 (172)
138 2f7s_A C25KG, RAS-related prot 98.7 1.4E-08 4.7E-13 96.6 7.6 91 196-297 25-130 (217)
139 2nzj_A GTP-binding protein REM 98.7 1.2E-08 4E-13 92.9 6.6 89 197-296 5-99 (175)
140 2efe_B Small GTP-binding prote 98.7 1.2E-08 4.3E-13 93.5 6.8 89 196-295 12-105 (181)
141 2y8e_A RAB-protein 6, GH09086P 98.7 1.4E-08 4.8E-13 92.7 7.0 90 196-296 14-108 (179)
142 1g16_A RAS-related protein SEC 98.7 6.8E-09 2.3E-13 93.9 4.7 90 197-297 4-98 (170)
143 3tw8_B RAS-related protein RAB 98.7 8.3E-09 2.8E-13 94.4 5.3 90 196-296 9-103 (181)
144 1z08_A RAS-related protein RAB 98.7 6.9E-09 2.4E-13 94.0 4.7 89 196-295 6-99 (170)
145 2bcg_Y Protein YP2, GTP-bindin 98.7 8.6E-09 2.9E-13 97.2 5.5 89 196-295 8-101 (206)
146 3q3j_B RHO-related GTP-binding 98.7 1.2E-08 4.1E-13 97.5 6.5 94 195-299 26-124 (214)
147 3tkl_A RAS-related protein RAB 98.7 1.3E-08 4.6E-13 94.6 6.7 91 196-297 16-111 (196)
148 3r7w_A Gtpase1, GTP-binding pr 98.7 1.1E-08 3.6E-13 104.0 6.5 91 195-296 2-102 (307)
149 3c5c_A RAS-like protein 12; GD 98.7 8.1E-09 2.8E-13 96.4 4.9 92 195-298 20-115 (187)
150 2bov_A RAla, RAS-related prote 98.7 1.5E-08 5E-13 95.1 6.7 90 195-295 13-106 (206)
151 4dsu_A GTPase KRAS, isoform 2B 98.7 1.3E-08 4.3E-13 94.0 6.1 89 196-295 4-96 (189)
152 1gwn_A RHO-related GTP-binding 98.7 1.4E-08 4.6E-13 96.7 6.3 88 195-293 27-118 (205)
153 2a5j_A RAS-related protein RAB 98.7 1E-08 3.5E-13 95.6 5.4 91 196-297 21-116 (191)
154 2o52_A RAS-related protein RAB 98.7 1.1E-08 3.7E-13 96.5 5.6 91 196-297 25-120 (200)
155 1tf7_A KAIC; homohexamer, hexa 98.7 1.3E-09 4.3E-14 119.0 -1.3 155 188-393 30-187 (525)
156 1mh1_A RAC1; GTP-binding, GTPa 98.7 1.8E-08 6.3E-13 92.6 6.7 87 196-293 5-95 (186)
157 2q3h_A RAS homolog gene family 98.7 1.6E-08 5.5E-13 94.9 6.2 88 195-293 19-110 (201)
158 3t5g_A GTP-binding protein RHE 98.7 1.1E-08 3.7E-13 94.2 4.8 90 196-296 6-99 (181)
159 2atv_A RERG, RAS-like estrogen 98.7 2.1E-08 7.3E-13 93.8 6.8 92 195-298 27-122 (196)
160 3clv_A RAB5 protein, putative; 98.7 1.5E-08 5E-13 94.2 5.7 88 195-293 6-135 (208)
161 2fn4_A P23, RAS-related protei 98.7 1.6E-08 5.4E-13 92.5 5.8 90 195-295 8-101 (181)
162 2a9k_A RAS-related protein RAL 98.7 1.9E-08 6.4E-13 92.5 6.3 89 196-295 18-110 (187)
163 2zej_A Dardarin, leucine-rich 98.7 1.1E-08 3.8E-13 95.0 4.8 89 197-296 3-102 (184)
164 2fu5_C RAS-related protein RAB 98.7 4.9E-09 1.7E-13 96.6 2.2 90 196-296 8-102 (183)
165 1vg8_A RAS-related protein RAB 98.7 1.3E-08 4.4E-13 95.7 5.1 89 195-294 7-100 (207)
166 3kkq_A RAS-related protein M-R 98.7 2E-08 6.8E-13 92.5 6.2 92 195-297 17-112 (183)
167 2qnr_A Septin-2, protein NEDD5 98.7 6.3E-08 2.1E-12 98.2 10.4 23 197-219 19-41 (301)
168 3dz8_A RAS-related protein RAB 98.7 9.5E-09 3.3E-13 95.9 3.8 93 195-298 22-119 (191)
169 3t1o_A Gliding protein MGLA; G 98.7 1.3E-08 4.3E-13 94.5 4.6 79 196-285 14-107 (198)
170 2j0v_A RAC-like GTP-binding pr 98.7 1.5E-08 5.3E-13 95.9 5.3 88 195-293 8-99 (212)
171 3cph_A RAS-related protein SEC 98.7 2E-08 6.8E-13 94.9 6.0 90 195-295 19-113 (213)
172 3thx_A DNA mismatch repair pro 98.7 2.2E-08 7.6E-13 115.5 7.5 33 185-217 651-683 (934)
173 3reg_A RHO-like small GTPase; 98.7 4.9E-08 1.7E-12 91.1 8.5 87 195-292 22-112 (194)
174 3oes_A GTPase rhebl1; small GT 98.6 1.8E-08 6.2E-13 94.8 5.4 93 195-298 23-119 (201)
175 3o47_A ADP-ribosylation factor 98.6 2E-08 6.8E-13 103.0 6.2 89 194-294 163-252 (329)
176 1ky3_A GTP-binding protein YPT 98.6 1.6E-08 5.6E-13 92.5 4.8 92 195-297 7-104 (182)
177 3cbq_A GTP-binding protein REM 98.6 3.3E-08 1.1E-12 93.1 6.9 92 196-298 23-120 (195)
178 2ce2_X GTPase HRAS; signaling 98.6 3.1E-08 1.1E-12 88.7 6.3 86 197-293 4-93 (166)
179 3cpj_B GTP-binding protein YPT 98.6 1.6E-08 5.6E-13 96.9 4.7 89 196-295 13-106 (223)
180 1pui_A ENGB, probable GTP-bind 98.6 2.1E-08 7.3E-13 94.7 5.2 88 191-284 21-117 (210)
181 3q85_A GTP-binding protein REM 98.6 4.1E-08 1.4E-12 88.9 6.8 90 197-297 3-98 (169)
182 4gzl_A RAS-related C3 botulinu 98.6 3.6E-08 1.2E-12 93.3 6.5 88 195-293 29-120 (204)
183 2yhs_A FTSY, cell division pro 98.6 2.3E-08 7.7E-13 107.4 5.2 71 186-270 283-357 (503)
184 3bwd_D RAC-like GTP-binding pr 98.6 1.1E-08 3.8E-13 93.9 2.3 88 195-293 7-98 (182)
185 2atx_A Small GTP binding prote 98.6 3.3E-08 1.1E-12 92.1 5.6 87 196-293 18-108 (194)
186 2wji_A Ferrous iron transport 98.6 1.5E-07 5.1E-12 85.7 9.5 78 197-284 4-90 (165)
187 2fh5_B SR-beta, signal recogni 98.6 1.1E-07 3.6E-12 90.2 8.8 79 195-284 6-87 (214)
188 3con_A GTPase NRAS; structural 98.6 3.8E-08 1.3E-12 91.3 5.4 89 196-295 21-113 (190)
189 2lkc_A Translation initiation 98.6 6.9E-08 2.3E-12 88.2 7.0 78 195-284 7-87 (178)
190 3e70_C DPA, signal recognition 98.6 3.7E-08 1.3E-12 101.1 5.3 38 193-238 126-163 (328)
191 2j1l_A RHO-related GTP-binding 98.6 7.2E-08 2.4E-12 91.9 6.7 88 195-293 33-124 (214)
192 2gco_A H9, RHO-related GTP-bin 98.5 1.6E-07 5.5E-12 88.4 8.8 86 196-292 25-114 (201)
193 4djt_A GTP-binding nuclear pro 98.5 2.1E-08 7.3E-13 95.4 2.7 89 196-295 11-105 (218)
194 2jeo_A Uridine-cytidine kinase 98.5 7.6E-09 2.6E-13 101.4 -0.6 34 186-219 15-48 (245)
195 1htw_A HI0065; nucleotide-bind 98.5 1.3E-08 4.5E-13 93.5 0.9 44 187-239 24-67 (158)
196 2f1r_A Molybdopterin-guanine d 98.5 8.7E-09 3E-13 96.0 -0.3 42 197-247 3-47 (171)
197 2fv8_A H6, RHO-related GTP-bin 98.5 1.5E-07 5.3E-12 88.9 8.1 86 195-291 24-113 (207)
198 3thx_B DNA mismatch repair pro 98.5 6.1E-08 2.1E-12 111.6 5.3 36 184-219 661-696 (918)
199 3gj0_A GTP-binding nuclear pro 98.5 2.7E-08 9.4E-13 95.0 1.8 93 195-298 14-111 (221)
200 4dkx_A RAS-related protein RAB 98.5 2E-07 6.8E-12 89.9 7.7 109 310-418 13-132 (216)
201 1fzq_A ADP-ribosylation factor 98.5 4.5E-07 1.6E-11 83.9 9.9 108 309-417 15-130 (181)
202 2g3y_A GTP-binding protein GEM 98.5 2.1E-07 7E-12 89.4 7.6 109 196-317 37-152 (211)
203 3r7w_B Gtpase2, GTP-binding pr 98.5 4.9E-08 1.7E-12 99.9 3.2 77 198-287 1-85 (331)
204 1wf3_A GTP-binding protein; GT 98.5 3.5E-07 1.2E-11 92.7 9.5 77 197-285 8-96 (301)
205 2qag_C Septin-7; cell cycle, c 98.5 2.8E-07 9.7E-12 97.5 9.2 45 151-219 10-54 (418)
206 2wjg_A FEOB, ferrous iron tran 98.5 4.9E-07 1.7E-11 83.4 9.5 79 196-284 7-94 (188)
207 2ehv_A Hypothetical protein PH 98.5 2.8E-08 9.5E-13 96.4 1.0 26 193-218 27-52 (251)
208 1svi_A GTP-binding protein YSX 98.5 1.7E-07 5.8E-12 87.1 6.2 80 195-284 22-114 (195)
209 3pqc_A Probable GTP-binding pr 98.4 2.3E-07 7.8E-12 85.8 6.8 82 195-284 22-113 (195)
210 2dyk_A GTP-binding protein; GT 98.4 5.2E-07 1.8E-11 80.7 8.9 75 198-284 3-88 (161)
211 3l0i_B RAS-related protein RAB 98.4 1.3E-08 4.3E-13 95.8 -2.2 92 196-298 33-129 (199)
212 3th5_A RAS-related C3 botulinu 97.8 2.6E-08 8.9E-13 93.9 0.0 90 194-294 28-121 (204)
213 2o8b_B DNA mismatch repair pro 98.4 1.1E-07 3.6E-12 111.1 5.0 34 185-219 771-811 (1022)
214 3llu_A RAS-related GTP-binding 98.4 3.1E-07 1.1E-11 86.0 7.3 79 195-286 19-107 (196)
215 2ohf_A Protein OLA1, GTP-bindi 98.4 4.3E-07 1.5E-11 95.2 8.7 80 193-287 19-129 (396)
216 2rcn_A Probable GTPase ENGC; Y 98.4 2.1E-08 7.3E-13 103.9 -1.4 36 195-238 214-250 (358)
217 1zj6_A ADP-ribosylation factor 98.4 6.4E-07 2.2E-11 82.9 8.7 108 309-417 15-130 (187)
218 2cjw_A GTP-binding protein GEM 98.4 2.1E-07 7.1E-12 87.3 5.4 89 197-296 7-102 (192)
219 3iev_A GTP-binding protein ERA 98.4 4.5E-07 1.5E-11 92.0 8.3 78 196-284 10-101 (308)
220 2wkq_A NPH1-1, RAS-related C3 98.4 4E-07 1.4E-11 92.0 7.1 87 195-292 154-244 (332)
221 3k53_A Ferrous iron transport 98.4 8.1E-07 2.8E-11 88.2 9.2 78 197-284 4-90 (271)
222 3qkt_A DNA double-strand break 98.4 3.1E-07 1.1E-11 94.4 6.1 73 321-398 240-321 (339)
223 3lxx_A GTPase IMAP family memb 98.4 1.1E-06 3.9E-11 85.2 9.6 57 195-252 28-89 (239)
224 3gee_A MNME, tRNA modification 98.3 2.4E-07 8.3E-12 99.7 5.2 91 194-288 231-326 (476)
225 1ni3_A YCHF GTPase, YCHF GTP-b 98.3 8.2E-07 2.8E-11 93.1 8.9 56 193-252 17-96 (392)
226 1ega_A Protein (GTP-binding pr 98.3 3.3E-07 1.1E-11 92.7 5.6 86 195-284 7-97 (301)
227 2b6h_A ADP-ribosylation factor 98.3 1.4E-06 4.9E-11 81.4 9.1 108 309-417 28-143 (192)
228 1r8s_A ADP-ribosylation factor 98.3 9.1E-07 3.1E-11 79.5 7.4 105 312-417 2-114 (164)
229 1f6b_A SAR1; gtpases, N-termin 98.3 4.9E-07 1.7E-11 85.1 5.6 107 310-417 25-139 (198)
230 2h17_A ADP-ribosylation factor 98.3 6.7E-07 2.3E-11 82.4 6.5 108 309-417 20-135 (181)
231 1mky_A Probable GTP-binding pr 98.3 1.1E-06 3.6E-11 93.7 8.5 58 196-254 180-241 (439)
232 3iby_A Ferrous iron transport 98.3 1.8E-06 6.3E-11 85.2 9.3 80 198-287 3-96 (256)
233 3lxw_A GTPase IMAP family memb 98.3 2.2E-06 7.6E-11 84.0 9.8 57 195-252 20-81 (247)
234 1ksh_A ARF-like protein 2; sma 98.3 1.2E-06 4E-11 80.8 7.1 108 309-417 17-132 (186)
235 4bas_A ADP-ribosylation factor 98.3 7.8E-07 2.7E-11 82.7 5.9 107 310-417 17-140 (199)
236 1tf7_A KAIC; homohexamer, hexa 98.3 3.3E-07 1.1E-11 99.9 3.6 34 191-229 276-309 (525)
237 1upt_A ARL1, ADP-ribosylation 98.2 9.2E-07 3.2E-11 79.9 5.8 107 310-417 7-121 (171)
238 1nrj_B SR-beta, signal recogni 98.2 3.8E-07 1.3E-11 86.6 3.0 85 195-292 11-101 (218)
239 1zd9_A ADP-ribosylation factor 98.2 1.9E-06 6.4E-11 80.0 7.6 108 309-417 21-137 (188)
240 3b1v_A Ferrous iron uptake tra 98.2 1.5E-06 5.2E-11 86.7 7.4 82 196-287 3-93 (272)
241 1cr0_A DNA primase/helicase; R 98.2 3.7E-07 1.3E-11 91.6 2.6 36 190-229 29-64 (296)
242 2h57_A ADP-ribosylation factor 98.2 9.1E-07 3.1E-11 82.1 4.8 107 310-417 21-139 (190)
243 2ged_A SR-beta, signal recogni 98.2 1.7E-07 5.7E-12 87.1 -0.4 85 195-292 47-137 (193)
244 2qtf_A Protein HFLX, GTP-bindi 98.2 3.6E-06 1.2E-10 87.5 9.5 56 195-251 177-236 (364)
245 3def_A T7I23.11 protein; chlor 98.2 3.5E-06 1.2E-10 83.2 8.8 88 195-285 35-126 (262)
246 1m2o_B GTP-binding protein SAR 98.2 1.2E-06 4.1E-11 81.7 5.1 107 310-417 23-137 (190)
247 2qu8_A Putative nucleolar GTP- 98.2 6.2E-06 2.1E-10 79.1 10.3 56 195-252 28-87 (228)
248 3i8s_A Ferrous iron transport 98.2 2.6E-06 8.9E-11 84.9 7.4 80 196-286 3-97 (274)
249 3a1s_A Iron(II) transport prot 98.2 3.1E-06 1E-10 83.7 7.8 81 196-287 5-96 (258)
250 4dhe_A Probable GTP-binding pr 98.2 1.7E-06 5.8E-11 82.2 5.7 82 195-284 28-124 (223)
251 1moz_A ARL1, ADP-ribosylation 98.2 1.2E-06 4E-11 80.4 4.4 108 309-417 17-132 (183)
252 2xtp_A GTPase IMAP family memb 98.1 7E-06 2.4E-10 80.5 10.2 91 195-286 21-116 (260)
253 1jal_A YCHF protein; nucleotid 98.1 2.9E-06 1E-10 88.0 7.6 81 196-284 2-105 (363)
254 1s96_A Guanylate kinase, GMP k 98.1 4.4E-07 1.5E-11 87.7 1.1 33 193-229 13-47 (219)
255 2x77_A ADP-ribosylation factor 98.1 1.2E-06 4.1E-11 81.1 3.9 108 309-417 21-136 (189)
256 3jvv_A Twitching mobility prot 98.1 1.3E-06 4.4E-11 90.6 4.4 33 193-229 120-152 (356)
257 1ewq_A DNA mismatch repair pro 98.1 3.8E-07 1.3E-11 103.4 0.3 38 185-229 568-606 (765)
258 2qm8_A GTPase/ATPase; G protei 98.1 1E-06 3.4E-11 90.7 3.2 37 189-229 48-84 (337)
259 1nij_A Hypothetical protein YJ 98.1 1.9E-07 6.6E-12 95.2 -2.3 39 197-239 5-47 (318)
260 1wb9_A DNA mismatch repair pro 98.1 2.7E-06 9.1E-11 97.0 6.7 34 185-219 597-630 (800)
261 1h65_A Chloroplast outer envel 98.1 2.6E-06 8.8E-11 84.5 5.8 86 196-284 39-128 (270)
262 2w0m_A SSO2452; RECA, SSPF, un 98.1 8.5E-07 2.9E-11 84.6 2.1 33 193-229 20-52 (235)
263 2x8a_A Nuclear valosin-contain 98.1 8.3E-07 2.8E-11 88.6 2.0 28 190-219 40-67 (274)
264 3dpu_A RAB family protein; roc 98.1 1.4E-06 4.8E-11 95.0 3.7 79 195-284 40-130 (535)
265 2hjg_A GTP-binding protein ENG 98.1 3.6E-06 1.2E-10 89.4 6.6 77 196-284 175-266 (436)
266 1xzp_A Probable tRNA modificat 98.0 2.3E-06 7.8E-11 92.2 4.7 81 195-287 242-336 (482)
267 2gza_A Type IV secretion syste 98.0 1.1E-06 3.8E-11 91.2 2.1 45 187-239 166-210 (361)
268 3lnc_A Guanylate kinase, GMP k 98.0 1.2E-06 4.2E-11 84.5 1.9 32 188-219 19-51 (231)
269 2hup_A RAS-related protein RAB 98.0 1.4E-05 4.9E-10 75.0 9.1 108 310-417 29-147 (201)
270 2cxx_A Probable GTP-binding pr 98.0 9.1E-06 3.1E-10 74.7 7.5 50 198-250 3-53 (190)
271 3q72_A GTP-binding protein RAD 98.0 1.3E-05 4.4E-10 71.9 8.3 107 311-417 3-119 (166)
272 3lvq_E ARF-GAP with SH3 domain 98.0 2.8E-06 9.7E-11 91.5 4.6 108 309-417 321-436 (497)
273 1pzn_A RAD51, DNA repair and r 98.0 1.7E-06 5.9E-11 89.4 2.7 34 191-228 126-161 (349)
274 3euj_A Chromosome partition pr 98.0 9.6E-07 3.3E-11 94.9 0.6 45 186-239 20-64 (483)
275 3geh_A MNME, tRNA modification 98.0 3.2E-06 1.1E-10 90.6 4.5 87 194-284 222-312 (462)
276 3tr0_A Guanylate kinase, GMP k 98.0 2.4E-06 8.3E-11 80.3 3.2 28 192-219 3-30 (205)
277 3o47_A ADP-ribosylation factor 98.0 7.2E-06 2.4E-10 83.9 6.6 108 309-417 164-279 (329)
278 1lnz_A SPO0B-associated GTP-bi 98.0 2E-06 6.9E-11 88.7 2.5 78 197-286 159-248 (342)
279 4a9a_A Ribosome-interacting GT 98.0 7.5E-06 2.6E-10 85.3 6.7 75 197-284 73-158 (376)
280 2eyu_A Twitching motility prot 98.0 1.7E-06 5.7E-11 85.9 1.6 39 193-239 22-61 (261)
281 2f7s_A C25KG, RAS-related prot 98.0 2.5E-05 8.6E-10 73.8 9.7 108 310-417 25-154 (217)
282 1zp6_A Hypothetical protein AT 98.0 6.2E-06 2.1E-10 76.6 5.3 37 193-239 6-42 (191)
283 3dz8_A RAS-related protein RAB 98.0 1.4E-05 4.8E-10 74.1 7.6 108 310-417 23-141 (191)
284 1ek0_A Protein (GTP-binding pr 97.9 2.1E-05 7.2E-10 70.5 8.4 108 311-418 4-122 (170)
285 4dcu_A GTP-binding protein ENG 97.9 1.5E-05 5.1E-10 85.2 8.3 79 195-285 194-287 (456)
286 2il1_A RAB12; G-protein, GDP, 97.9 3.5E-05 1.2E-09 71.6 9.8 108 310-417 26-144 (192)
287 3c8u_A Fructokinase; YP_612366 97.9 2.9E-06 9.9E-11 80.7 1.7 38 194-239 20-60 (208)
288 1z0f_A RAB14, member RAS oncog 97.9 3.5E-05 1.2E-09 69.7 8.9 108 310-417 15-133 (179)
289 2yc2_C IFT27, small RAB-relate 97.9 1.7E-05 5.7E-10 74.0 6.9 108 310-417 20-145 (208)
290 3bc1_A RAS-related protein RAB 97.9 2.5E-05 8.6E-10 71.6 8.0 108 310-417 11-140 (195)
291 1jwy_B Dynamin A GTPase domain 97.9 3.3E-05 1.1E-09 77.7 9.3 26 196-221 24-49 (315)
292 2nzj_A GTP-binding protein REM 97.9 2.9E-05 9.9E-10 70.1 8.0 107 311-417 5-124 (175)
293 1z06_A RAS-related protein RAB 97.9 3.7E-05 1.3E-09 70.9 8.8 108 310-417 20-140 (189)
294 3t5d_A Septin-7; GTP-binding p 97.9 4.6E-05 1.6E-09 75.6 10.0 55 197-251 9-75 (274)
295 2dy1_A Elongation factor G; tr 97.9 2.4E-05 8.3E-10 87.6 8.8 81 192-284 5-106 (665)
296 1r2q_A RAS-related protein RAB 97.9 3.5E-05 1.2E-09 69.0 8.3 107 311-417 7-124 (170)
297 1zbd_A Rabphilin-3A; G protein 97.9 4E-05 1.4E-09 71.5 8.9 107 311-417 9-126 (203)
298 2g6b_A RAS-related protein RAB 97.8 2.5E-05 8.6E-10 71.0 7.3 108 310-417 10-129 (180)
299 3tkl_A RAS-related protein RAB 97.8 2.2E-05 7.5E-10 72.5 6.9 108 310-417 16-134 (196)
300 2e87_A Hypothetical protein PH 97.8 4.9E-05 1.7E-09 78.5 10.2 58 195-253 166-226 (357)
301 2bme_A RAB4A, RAS-related prot 97.8 3.3E-05 1.1E-09 70.7 8.0 108 310-417 10-128 (186)
302 2fg5_A RAB-22B, RAS-related pr 97.8 2E-05 6.8E-10 73.2 6.5 108 310-417 23-141 (192)
303 1lvg_A Guanylate kinase, GMP k 97.8 3.9E-06 1.3E-10 79.3 1.6 25 195-219 3-27 (198)
304 2dby_A GTP-binding protein; GD 97.8 1.7E-05 5.7E-10 82.6 6.5 72 198-284 3-108 (368)
305 1u8z_A RAS-related protein RAL 97.8 4.9E-05 1.7E-09 67.7 8.8 107 311-417 5-122 (168)
306 2ew1_A RAS-related protein RAB 97.8 3.3E-05 1.1E-09 72.9 8.0 108 310-417 26-144 (201)
307 3t1o_A Gliding protein MGLA; G 97.8 1.2E-05 4.1E-10 74.1 4.7 108 310-417 14-148 (198)
308 1kao_A RAP2A; GTP-binding prot 97.8 4.8E-05 1.7E-09 67.7 8.6 107 311-417 4-121 (167)
309 3q85_A GTP-binding protein REM 97.8 3.8E-05 1.3E-09 69.0 7.8 106 312-417 4-122 (169)
310 2hxs_A RAB-26, RAS-related pro 97.8 1.6E-05 5.5E-10 72.2 5.4 108 310-417 6-128 (178)
311 1u0l_A Probable GTPase ENGC; p 97.8 8.9E-06 3E-10 82.2 3.8 35 195-237 168-202 (301)
312 2fu5_C RAS-related protein RAB 97.8 1.8E-05 6.1E-10 72.4 5.5 107 311-417 9-126 (183)
313 1sq5_A Pantothenate kinase; P- 97.8 6.6E-06 2.3E-10 83.4 2.7 32 194-229 78-111 (308)
314 3a00_A Guanylate kinase, GMP k 97.8 6.6E-06 2.3E-10 76.7 2.4 30 196-229 1-30 (186)
315 2p5s_A RAS and EF-hand domain 97.8 3.4E-05 1.2E-09 72.0 7.2 108 310-417 28-146 (199)
316 2erx_A GTP-binding protein DI- 97.8 6.7E-05 2.3E-09 67.2 8.8 107 311-417 4-122 (172)
317 1z2a_A RAS-related protein RAB 97.8 2.6E-05 8.9E-10 69.8 6.0 108 310-417 5-122 (168)
318 1lw7_A Transcriptional regulat 97.8 6.4E-06 2.2E-10 85.3 2.2 37 188-228 160-198 (365)
319 1z0j_A RAB-22, RAS-related pro 97.8 4.4E-05 1.5E-09 68.4 7.5 107 311-417 7-124 (170)
320 1z08_A RAS-related protein RAB 97.8 2.8E-05 9.5E-10 69.9 6.0 107 311-417 7-124 (170)
321 2aka_B Dynamin-1; fusion prote 97.8 4.2E-05 1.4E-09 76.1 7.9 26 196-221 26-51 (299)
322 1c1y_A RAS-related protein RAP 97.8 3.8E-05 1.3E-09 68.6 6.8 107 311-417 4-121 (167)
323 2j41_A Guanylate kinase; GMP, 97.8 1.4E-05 4.6E-10 75.1 3.9 33 193-229 3-35 (207)
324 2a5j_A RAS-related protein RAB 97.8 3.8E-05 1.3E-09 71.1 6.9 108 310-417 21-139 (191)
325 2o52_A RAS-related protein RAB 97.8 3.4E-05 1.1E-09 72.3 6.5 108 310-417 25-143 (200)
326 1wxq_A GTP-binding protein; st 97.7 4.8E-05 1.6E-09 79.9 8.3 83 198-284 2-110 (397)
327 2efe_B Small GTP-binding prote 97.7 5.3E-05 1.8E-09 68.9 7.6 108 310-417 12-130 (181)
328 2y8e_A RAB-protein 6, GH09086P 97.7 5.5E-05 1.9E-09 68.4 7.7 107 311-417 15-132 (179)
329 3r7w_B Gtpase2, GTP-binding pr 97.7 2.9E-05 1E-09 79.3 6.3 103 312-417 1-119 (331)
330 4a74_A DNA repair and recombin 97.7 1E-05 3.5E-10 77.1 2.8 27 193-219 22-48 (231)
331 1t9h_A YLOQ, probable GTPase E 97.7 5.9E-06 2E-10 83.8 1.1 39 191-237 168-206 (307)
332 3t34_A Dynamin-related protein 97.7 4.8E-05 1.6E-09 78.5 7.9 24 198-221 36-59 (360)
333 3pih_A Uvrabc system protein A 97.7 7E-06 2.4E-10 94.5 1.7 96 315-417 450-559 (916)
334 3r7w_A Gtpase1, GTP-binding pr 97.7 4.5E-05 1.6E-09 77.1 7.6 106 311-417 4-128 (307)
335 2fh5_B SR-beta, signal recogni 97.7 6.2E-05 2.1E-09 70.9 8.0 108 310-417 7-128 (214)
336 2qag_B Septin-6, protein NEDD5 97.7 1E-05 3.6E-10 85.5 2.7 33 188-220 32-66 (427)
337 3q3j_B RHO-related GTP-binding 97.7 2.3E-05 7.9E-10 74.5 4.6 109 309-417 26-144 (214)
338 2a9k_A RAS-related protein RAL 97.7 0.0001 3.4E-09 67.1 8.7 108 310-417 18-136 (187)
339 2oil_A CATX-8, RAS-related pro 97.7 6.3E-05 2.2E-09 69.5 7.5 108 310-417 25-143 (193)
340 2oap_1 GSPE-2, type II secreti 97.7 9.2E-06 3.1E-10 88.1 1.9 44 188-239 252-295 (511)
341 2bov_A RAla, RAS-related prote 97.7 8E-05 2.7E-09 69.3 8.1 108 310-417 14-132 (206)
342 3c5c_A RAS-like protein 12; GD 97.7 5.4E-05 1.9E-09 70.1 6.8 107 310-417 21-140 (187)
343 1wms_A RAB-9, RAB9, RAS-relate 97.7 5.6E-05 1.9E-09 68.4 6.7 106 311-416 8-128 (177)
344 3cbq_A GTP-binding protein REM 97.7 8.1E-05 2.8E-09 69.6 7.8 108 310-417 23-143 (195)
345 3tw8_B RAS-related protein RAB 97.7 4.5E-05 1.5E-09 69.1 5.9 107 311-417 10-126 (181)
346 3c5h_A Glucocorticoid receptor 97.7 3.8E-06 1.3E-10 82.6 -1.6 24 195-218 18-50 (255)
347 3t5g_A GTP-binding protein RHE 97.7 2.4E-05 8.1E-10 71.4 3.9 107 310-416 6-123 (181)
348 3cnl_A YLQF, putative uncharac 97.7 1.1E-05 3.7E-10 80.0 1.7 54 197-252 100-155 (262)
349 3kkq_A RAS-related protein M-R 97.7 6.6E-05 2.3E-09 68.6 6.9 108 310-417 18-136 (183)
350 4djt_A GTP-binding nuclear pro 97.7 4.3E-05 1.5E-09 72.2 5.7 108 310-417 11-130 (218)
351 2fn4_A P23, RAS-related protei 97.6 5.4E-05 1.9E-09 68.6 6.1 108 310-417 9-127 (181)
352 3gj0_A GTP-binding nuclear pro 97.6 1.8E-05 6.1E-10 75.2 2.9 108 310-417 15-132 (221)
353 1puj_A YLQF, conserved hypothe 97.6 1.8E-05 6.2E-10 79.2 3.1 56 195-252 119-176 (282)
354 3j2k_7 ERF3, eukaryotic polype 97.6 8.7E-05 3E-09 78.9 8.5 80 195-286 16-129 (439)
355 1ky3_A GTP-binding protein YPT 97.6 3.7E-05 1.3E-09 69.8 4.8 107 310-416 8-130 (182)
356 2iwr_A Centaurin gamma 1; ANK 97.6 7.7E-05 2.6E-09 67.8 6.9 102 310-416 7-120 (178)
357 2r6f_A Excinuclease ABC subuni 97.6 1.8E-05 6.1E-10 91.0 3.0 98 313-417 488-599 (972)
358 3sjy_A Translation initiation 97.6 0.00016 5.4E-09 75.9 10.0 78 195-286 7-109 (403)
359 2bcg_Y Protein YP2, GTP-bindin 97.6 4E-05 1.4E-09 71.8 4.9 107 311-417 9-126 (206)
360 3tr5_A RF-3, peptide chain rel 97.6 0.00015 5.1E-09 78.9 10.0 78 196-285 13-115 (528)
361 3asz_A Uridine kinase; cytidin 97.6 2.1E-05 7.1E-10 74.4 2.8 26 194-219 4-29 (211)
362 2yv5_A YJEQ protein; hydrolase 97.6 2.2E-05 7.6E-10 79.3 3.2 35 194-237 163-197 (302)
363 2atv_A RERG, RAS-like estrogen 97.6 0.00013 4.6E-09 67.6 8.4 107 310-417 28-145 (196)
364 3izq_1 HBS1P, elongation facto 97.6 8.3E-05 2.8E-09 82.4 8.0 81 194-286 165-279 (611)
365 2gf0_A GTP-binding protein DI- 97.6 6.8E-05 2.3E-09 69.4 6.2 108 310-417 8-127 (199)
366 1svi_A GTP-binding protein YSX 97.6 9.8E-05 3.3E-09 68.1 7.3 105 310-416 23-146 (195)
367 1x3s_A RAS-related protein RAB 97.6 6.1E-05 2.1E-09 69.3 5.9 107 310-416 15-133 (195)
368 2gf9_A RAS-related protein RAB 97.6 4.4E-05 1.5E-09 70.4 4.9 108 310-417 22-140 (189)
369 3qq5_A Small GTP-binding prote 97.6 2.3E-05 7.8E-10 83.0 3.2 79 196-285 34-123 (423)
370 3oes_A GTPase rhebl1; small GT 97.6 2.7E-05 9.2E-10 72.8 3.4 108 310-417 24-142 (201)
371 2qpt_A EH domain-containing pr 97.6 7.9E-05 2.7E-09 81.5 7.6 28 195-222 64-91 (550)
372 2zej_A Dardarin, leucine-rich 97.6 7.7E-05 2.6E-09 68.7 6.2 106 311-417 3-125 (184)
373 2bbw_A Adenylate kinase 4, AK4 97.6 2.8E-05 9.6E-10 75.7 3.3 31 195-229 26-59 (246)
374 3cpj_B GTP-binding protein YPT 97.6 4.3E-05 1.5E-09 72.8 4.6 108 310-417 13-131 (223)
375 3llu_A RAS-related GTP-binding 97.6 5.9E-05 2E-09 70.3 5.3 105 309-416 19-141 (196)
376 4dsu_A GTPase KRAS, isoform 2B 97.6 7.1E-05 2.4E-09 68.4 5.7 107 311-417 5-122 (189)
377 3l0i_B RAS-related protein RAB 97.6 2.4E-05 8.4E-10 73.0 2.4 107 310-416 33-150 (199)
378 1kgd_A CASK, peripheral plasma 97.6 3.1E-05 1.1E-09 71.8 3.1 25 195-219 4-28 (180)
379 2h5e_A Peptide chain release f 97.5 0.00013 4.4E-09 79.5 8.3 79 195-285 12-115 (529)
380 3clv_A RAB5 protein, putative; 97.5 0.00013 4.4E-09 67.1 7.2 106 310-415 7-158 (208)
381 2p67_A LAO/AO transport system 97.5 3.7E-05 1.3E-09 79.0 3.5 29 190-218 50-78 (341)
382 1g16_A RAS-related protein SEC 97.5 5.5E-05 1.9E-09 67.8 4.3 106 311-416 4-120 (170)
383 2elf_A Protein translation elo 97.5 6.3E-05 2.2E-09 78.2 5.3 72 198-287 23-94 (370)
384 3reg_A RHO-like small GTPase; 97.5 7.8E-05 2.7E-09 69.1 5.4 108 310-417 23-140 (194)
385 3ihw_A Centg3; RAS, centaurin, 97.5 0.00015 5.2E-09 67.0 7.3 103 309-416 19-131 (184)
386 3pqc_A Probable GTP-binding pr 97.5 0.00019 6.5E-09 65.8 8.0 105 310-416 23-145 (195)
387 2j1l_A RHO-related GTP-binding 97.5 7.9E-05 2.7E-09 70.6 5.4 108 310-417 34-151 (214)
388 1dar_A EF-G, elongation factor 97.5 0.00015 5.3E-09 81.4 8.6 77 196-284 12-109 (691)
389 1m7b_A RND3/RHOE small GTP-bin 97.5 6.3E-05 2.2E-09 69.1 4.4 108 310-417 7-124 (184)
390 1d2e_A Elongation factor TU (E 97.5 0.00011 3.9E-09 76.9 6.8 80 196-286 3-100 (397)
391 2dyk_A GTP-binding protein; GT 97.5 0.00022 7.6E-09 63.2 7.8 105 312-417 3-121 (161)
392 4fid_A G protein alpha subunit 97.5 0.00011 3.8E-09 75.4 6.6 110 194-315 3-235 (340)
393 3cph_A RAS-related protein SEC 97.5 0.0001 3.5E-09 69.0 5.7 107 310-416 20-137 (213)
394 2qag_A Septin-2, protein NEDD5 97.5 0.00016 5.5E-09 74.8 7.7 55 197-251 38-105 (361)
395 2c78_A Elongation factor TU-A; 97.5 0.00014 4.9E-09 76.2 7.4 81 195-286 10-109 (405)
396 2q3h_A RAS homolog gene family 97.5 7E-05 2.4E-09 69.7 4.4 108 310-417 20-137 (201)
397 2ewv_A Twitching motility prot 97.5 3.1E-05 1.1E-09 80.6 2.1 33 193-229 133-166 (372)
398 1gwn_A RHO-related GTP-binding 97.5 7.1E-05 2.4E-09 70.7 4.4 109 309-417 27-145 (205)
399 1wb1_A Translation elongation 97.5 0.0002 6.7E-09 77.1 8.4 79 196-286 19-107 (482)
400 1vg8_A RAS-related protein RAB 97.4 4.1E-05 1.4E-09 71.4 2.4 108 310-417 8-130 (207)
401 1jny_A EF-1-alpha, elongation 97.4 0.00014 4.9E-09 77.1 6.9 81 196-288 6-120 (435)
402 4e22_A Cytidylate kinase; P-lo 97.4 5E-05 1.7E-09 74.5 3.2 32 194-229 25-59 (252)
403 2vf7_A UVRA2, excinuclease ABC 97.4 5.3E-05 1.8E-09 86.5 3.8 98 313-417 363-474 (842)
404 3izy_P Translation initiation 97.4 1.1E-05 3.8E-10 87.9 -1.9 81 195-286 3-86 (537)
405 2ygr_A Uvrabc system protein A 97.4 2.8E-05 9.5E-10 89.7 1.2 98 313-417 505-616 (993)
406 3p26_A Elongation factor 1 alp 97.4 0.00017 5.8E-09 77.5 7.2 79 195-285 32-144 (483)
407 3ec2_A DNA replication protein 97.4 2.6E-05 8.8E-10 72.0 0.6 33 193-229 35-67 (180)
408 1p9r_A General secretion pathw 97.4 3.4E-05 1.2E-09 81.5 1.6 32 194-229 165-196 (418)
409 2j0v_A RAC-like GTP-binding pr 97.4 4.9E-05 1.7E-09 71.5 2.5 108 310-417 9-126 (212)
410 1f60_A Elongation factor EEF1A 97.4 0.00021 7.2E-09 76.4 7.7 79 196-286 7-119 (458)
411 3tau_A Guanylate kinase, GMP k 97.4 7.2E-05 2.4E-09 71.0 3.5 26 194-219 6-31 (208)
412 3bwd_D RAC-like GTP-binding pr 97.4 5.4E-05 1.8E-09 68.9 2.4 108 310-417 8-125 (182)
413 1zun_B Sulfate adenylate trans 97.4 0.0003 1E-08 74.5 8.6 79 196-286 24-138 (434)
414 3kta_A Chromosome segregation 97.4 5.7E-05 1.9E-09 69.6 2.5 28 191-219 22-49 (182)
415 1mh1_A RAC1; GTP-binding, GTPa 97.4 8.7E-05 3E-09 67.6 3.6 107 311-417 6-122 (186)
416 3ohm_A Guanine nucleotide-bind 97.4 0.00036 1.2E-08 71.3 8.5 108 198-317 9-241 (327)
417 4eun_A Thermoresistant glucoki 97.4 7.1E-05 2.4E-09 70.4 3.0 27 193-219 26-52 (200)
418 2atx_A Small GTP binding prote 97.4 8.1E-05 2.8E-09 68.8 3.4 108 310-417 18-135 (194)
419 3con_A GTPase NRAS; structural 97.4 0.00023 7.9E-09 65.4 6.4 106 311-416 22-138 (190)
420 2ce2_X GTPase HRAS; signaling 97.4 0.00023 7.9E-09 63.0 6.2 107 311-417 4-121 (166)
421 2fv8_A H6, RHO-related GTP-bin 97.4 8.9E-05 3E-09 69.7 3.5 108 310-417 25-142 (207)
422 4gzl_A RAS-related C3 botulinu 97.3 8.7E-05 3E-09 69.7 3.4 109 309-417 29-147 (204)
423 2wji_A Ferrous iron transport 97.3 0.00037 1.3E-08 62.9 7.5 106 311-417 4-121 (165)
424 2lkc_A Translation initiation 97.3 6.2E-05 2.1E-09 68.2 2.2 106 310-416 8-119 (178)
425 2xex_A Elongation factor G; GT 97.3 0.00027 9.4E-09 79.4 7.9 77 196-284 10-107 (693)
426 2bdt_A BH3686; alpha-beta prot 97.3 6.1E-05 2.1E-09 69.9 2.0 23 196-218 2-24 (189)
427 2g3y_A GTP-binding protein GEM 97.3 0.00041 1.4E-08 66.2 7.9 108 310-417 37-158 (211)
428 2gco_A H9, RHO-related GTP-bin 97.3 0.00011 3.8E-09 68.7 3.9 108 310-417 25-142 (201)
429 1r5b_A Eukaryotic peptide chai 97.3 0.00017 6E-09 77.2 5.7 80 195-286 42-155 (467)
430 1wf3_A GTP-binding protein; GT 97.3 0.00056 1.9E-08 68.9 9.0 105 312-417 9-130 (301)
431 1qhl_A Protein (cell division 97.3 7E-06 2.4E-10 79.7 -5.1 35 197-239 28-62 (227)
432 1nrj_B SR-beta, signal recogni 97.3 0.00026 8.8E-09 66.8 5.9 103 310-418 12-134 (218)
433 2j69_A Bacterial dynamin-like 97.3 0.0002 6.9E-09 80.5 5.9 27 195-221 68-94 (695)
434 3i8s_A Ferrous iron transport 97.3 0.00028 9.7E-09 70.0 6.3 106 311-418 4-126 (274)
435 2x2e_A Dynamin-1; nitration, h 97.3 0.0003 1E-08 72.4 6.6 26 196-221 31-56 (353)
436 3iby_A Ferrous iron transport 97.3 0.00029 1E-08 69.3 6.1 105 312-418 3-124 (256)
437 1f2t_B RAD50 ABC-ATPase; DNA d 97.2 8.8E-05 3E-09 67.1 1.7 71 324-402 52-135 (148)
438 2vp4_A Deoxynucleoside kinase; 97.2 0.00011 3.9E-09 70.7 2.6 27 193-219 17-43 (230)
439 2gj8_A MNME, tRNA modification 97.2 0.00083 2.8E-08 61.2 8.3 105 310-416 4-127 (172)
440 1kk1_A EIF2gamma; initiation o 97.2 0.00075 2.5E-08 70.9 8.9 80 196-286 10-117 (410)
441 3iev_A GTP-binding protein ERA 97.2 0.0011 3.6E-08 67.0 9.5 105 312-417 12-135 (308)
442 1s0u_A EIF-2-gamma, translatio 97.2 0.00082 2.8E-08 70.5 8.8 81 195-286 7-115 (408)
443 1rz3_A Hypothetical protein rb 97.2 0.00013 4.3E-09 68.8 2.3 33 193-229 19-51 (201)
444 2qu8_A Putative nucleolar GTP- 97.2 0.0019 6.5E-08 61.5 10.6 107 309-417 28-155 (228)
445 3uie_A Adenylyl-sulfate kinase 97.2 0.00013 4.3E-09 68.7 2.2 34 191-229 20-53 (200)
446 3ney_A 55 kDa erythrocyte memb 97.1 0.0002 6.7E-09 68.0 3.3 27 193-219 16-42 (197)
447 1knq_A Gluconate kinase; ALFA/ 97.1 0.00018 6.2E-09 65.7 3.0 26 194-219 6-31 (175)
448 3vaa_A Shikimate kinase, SK; s 97.1 0.00023 7.9E-09 66.8 3.6 33 187-219 16-48 (199)
449 3gee_A MNME, tRNA modification 97.1 0.00049 1.7E-08 73.9 6.5 107 310-417 233-356 (476)
450 2ged_A SR-beta, signal recogni 97.1 0.0001 3.5E-09 68.0 0.7 107 309-417 47-169 (193)
451 3cb4_D GTP-binding protein LEP 97.1 0.0005 1.7E-08 75.8 6.2 77 197-284 5-103 (599)
452 3th5_A RAS-related C3 botulinu 96.1 8.5E-05 2.9E-09 69.5 0.0 109 309-417 29-147 (204)
453 3avx_A Elongation factor TS, e 97.1 0.00046 1.6E-08 80.7 6.1 81 195-286 295-393 (1289)
454 2rdo_7 EF-G, elongation factor 97.1 0.0011 3.9E-08 74.4 9.2 80 195-285 9-115 (704)
455 1g7s_A Translation initiation 97.1 0.00017 5.7E-09 79.6 2.3 79 196-285 5-103 (594)
456 1kag_A SKI, shikimate kinase I 97.1 0.00022 7.7E-09 64.8 2.8 25 195-219 3-27 (173)
457 2wjg_A FEOB, ferrous iron tran 97.0 0.00073 2.5E-08 61.8 6.2 106 311-417 8-125 (188)
458 4dhe_A Probable GTP-binding pr 97.0 0.00068 2.3E-08 64.0 6.0 107 310-417 29-157 (223)
459 1n0u_A EF-2, elongation factor 97.0 0.00063 2.2E-08 78.1 6.7 77 197-284 20-130 (842)
460 2www_A Methylmalonic aciduria 97.0 0.00018 6.1E-09 74.2 1.9 31 195-229 73-103 (349)
461 3lxw_A GTPase IMAP family memb 97.0 0.0011 3.8E-08 64.6 7.5 106 310-416 21-151 (247)
462 2ywe_A GTP-binding protein LEP 97.0 0.0012 4.3E-08 72.6 8.7 78 197-285 7-106 (600)
463 1n0w_A DNA repair protein RAD5 97.0 0.00033 1.1E-08 67.1 3.6 26 193-218 21-46 (243)
464 3nwj_A ATSK2; P loop, shikimat 97.0 6.3E-05 2.2E-09 74.0 -1.6 32 188-219 37-71 (250)
465 1zo1_I IF2, translation initia 97.0 9.4E-05 3.2E-09 79.9 -0.7 78 195-286 3-85 (501)
466 2cjw_A GTP-binding protein GEM 97.0 0.00047 1.6E-08 64.1 4.1 106 311-416 7-126 (192)
467 3a1s_A Iron(II) transport prot 96.9 0.0011 3.9E-08 65.0 6.7 106 311-418 6-124 (258)
468 3ec1_A YQEH GTPase; atnos1, at 96.9 0.00027 9.2E-09 73.4 2.2 58 195-252 161-223 (369)
469 2qt1_A Nicotinamide riboside k 96.9 0.00057 1.9E-08 64.3 4.1 28 192-219 17-44 (207)
470 2kjq_A DNAA-related protein; s 96.9 0.00029 9.8E-09 63.5 1.9 25 195-219 35-59 (149)
471 2px0_A Flagellar biosynthesis 96.9 0.00032 1.1E-08 70.6 2.3 32 194-229 103-134 (296)
472 1xzp_A Probable tRNA modificat 96.9 0.00068 2.3E-08 72.9 4.9 106 311-417 244-363 (482)
473 3b1v_A Ferrous iron uptake tra 96.9 0.00095 3.3E-08 66.3 5.6 105 311-418 4-121 (272)
474 2wkq_A NPH1-1, RAS-related C3 96.8 0.00052 1.8E-08 68.8 3.6 109 309-417 154-272 (332)
475 1vma_A Cell division protein F 96.8 0.00054 1.8E-08 69.4 3.5 35 191-229 99-133 (306)
476 3mca_A HBS1, elongation factor 96.8 0.00021 7.1E-09 78.9 0.4 78 196-285 177-288 (592)
477 2f9l_A RAB11B, member RAS onco 96.8 0.0015 5.1E-08 60.7 6.1 107 311-417 6-123 (199)
478 3cr8_A Sulfate adenylyltranfer 96.8 0.00028 9.7E-09 77.1 1.1 34 192-229 365-398 (552)
479 1svm_A Large T antigen; AAA+ f 96.8 0.00041 1.4E-08 72.3 2.2 32 188-219 161-192 (377)
480 1cke_A CK, MSSA, protein (cyti 96.8 0.00037 1.3E-08 66.3 1.6 24 196-219 5-28 (227)
481 3h2y_A GTPase family protein; 96.7 0.00071 2.4E-08 70.2 3.4 59 195-253 159-223 (368)
482 1f5n_A Interferon-induced guan 96.7 0.0014 4.8E-08 72.0 5.9 59 195-253 37-103 (592)
483 1zu4_A FTSY; GTPase, signal re 96.7 0.00054 1.9E-08 69.7 2.4 38 188-229 97-134 (320)
484 2cvh_A DNA repair and recombin 96.7 0.00075 2.6E-08 63.5 3.2 26 193-218 17-42 (220)
485 3k53_A Ferrous iron transport 96.7 0.0017 5.9E-08 63.9 6.0 105 311-417 4-122 (271)
486 3dpu_A RAB family protein; roc 96.7 0.0012 4.1E-08 71.8 5.0 108 310-417 41-163 (535)
487 2o5v_A DNA replication and rep 96.7 0.00059 2E-08 70.6 2.4 31 187-218 18-48 (359)
488 2cxx_A Probable GTP-binding pr 96.6 0.0016 5.4E-08 59.4 5.0 103 312-417 3-135 (190)
489 1ixz_A ATP-dependent metallopr 96.6 0.00077 2.6E-08 65.5 2.8 28 190-219 45-72 (254)
490 3tqc_A Pantothenate kinase; bi 96.6 0.00088 3E-08 68.2 3.2 24 196-219 92-115 (321)
491 1jjv_A Dephospho-COA kinase; P 96.6 0.00098 3.4E-08 62.5 3.3 22 198-219 4-25 (206)
492 1oix_A RAS-related protein RAB 96.6 0.0019 6.4E-08 59.8 5.1 107 311-417 30-147 (191)
493 1w1w_A Structural maintenance 96.5 0.0009 3.1E-08 70.6 2.7 66 327-398 331-404 (430)
494 1iy2_A ATP-dependent metallopr 96.5 0.001 3.5E-08 65.7 2.8 28 190-219 69-96 (278)
495 2xtp_A GTPase IMAP family memb 96.5 0.0079 2.7E-07 58.4 9.3 80 310-390 22-117 (260)
496 1nlf_A Regulatory protein REPA 96.5 0.00094 3.2E-08 66.1 2.6 27 193-219 27-53 (279)
497 3lxx_A GTPase IMAP family memb 96.5 0.0055 1.9E-07 58.8 7.9 83 310-393 29-127 (239)
498 1in4_A RUVB, holliday junction 96.5 0.00077 2.6E-08 68.7 1.8 23 197-219 52-74 (334)
499 2qor_A Guanylate kinase; phosp 96.5 0.0014 4.6E-08 61.7 3.3 26 194-219 10-35 (204)
500 2if2_A Dephospho-COA kinase; a 96.5 0.0012 4E-08 61.8 2.8 22 198-219 3-24 (204)
No 1
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.90 E-value=2e-25 Score=231.86 Aligned_cols=213 Identities=14% Similarity=0.140 Sum_probs=150.0
Q ss_pred hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304 152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN 231 (537)
Q Consensus 152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t 231 (537)
++.++++.+.|++.. +...++|.+.+|++++|+||||||||||+++|+|. ..|++|
T Consensus 4 ~l~i~~ls~~y~~~~------------------~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl----~~p~~G-- 59 (359)
T 3fvq_A 4 ALHIGHLSKSFQNTP------------------VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGF----EQPDSG-- 59 (359)
T ss_dssp CEEEEEEEEEETTEE------------------EEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTS----SCCSEE--
T ss_pred EEEEEeEEEEECCEE------------------EEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcC----CCCCCc--
Confidence 567888888876432 23345678889999999999999999999999999 999999
Q ss_pred eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcC--CccccC
Q psy16304 232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHL--PLVDFR 309 (537)
Q Consensus 232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l--~~~~~~ 309 (537)
+|.++| .++...+. .... .++.+++|||++.+++.++. .+++...+...... ....+.
T Consensus 60 --~I~i~G-~~i~~~~~-~~~~----~~r~ig~vfQ~~~l~p~ltV------------~eni~~~l~~~~~~~~~~~~~v 119 (359)
T 3fvq_A 60 --EISLSG-KTIFSKNT-NLPV----RERRLGYLVQEGVLFPHLTV------------YRNIAYGLGNGKGRTAQERQRI 119 (359)
T ss_dssp --EEEETT-EEEESSSC-BCCG----GGSCCEEECTTCCCCTTSCH------------HHHHHTTSTTSSCCSHHHHHHH
T ss_pred --EEEECC-EECccccc-ccch----hhCCEEEEeCCCcCCCCCCH------------HHHHHHHHHHcCCChHHHHHHH
Confidence 999997 55532111 1111 23679999999988876554 11111111100000 011123
Q ss_pred CccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH--HHHH---HHHHhcCCEE
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIW---KQYLGTVSQT 382 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l~---~~~~~~~~~v 382 (537)
...+..+|+.+.. .+.+.+|||||+||+ ++|++++. + |++++|| |++++.. ..++ ..+.++.+.+
T Consensus 120 ~~~l~~~gL~~~~-~r~~~~LSGGq~QRV----alArAL~~-~--P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~t 191 (359)
T 3fvq_A 120 EAMLELTGISELA-GRYPHELSGGQQQRA----ALARALAP-D--PELILLDEPFSALDEQLRRQIREDMIAALRANGKS 191 (359)
T ss_dssp HHHHHHHTCGGGT-TSCGGGSCHHHHHHH----HHHHHHTT-C--CSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHcCCchHh-cCChhhCCHHHHHHH----HHHHHHHc-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCE
Confidence 3445578887765 455999999999999 99999996 4 8999999 9999322 2233 3444455567
Q ss_pred EEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchh
Q psy16304 383 LLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLS 417 (537)
Q Consensus 383 IlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~ 417 (537)
++++ +||..++...+ +++|++|+++..|++.++.
T Consensus 192 vi~v-THd~~ea~~~aDri~vl~~G~i~~~g~~~el~ 227 (359)
T 3fvq_A 192 AVFV-SHDREEALQYADRIAVMKQGRILQTASPHELY 227 (359)
T ss_dssp EEEE-CCCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred EEEE-eCCHHHHHHHCCEEEEEECCEEEEEeCHHHHH
Confidence 7777 89998876543 9999999999999998874
No 2
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.90 E-value=5.9e-26 Score=236.11 Aligned_cols=219 Identities=16% Similarity=0.121 Sum_probs=152.8
Q ss_pred hhhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304 150 GILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG 229 (537)
Q Consensus 150 ~~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G 229 (537)
+.++.++++.+.|+...- . ..+...++|.+.+|+++||+||||||||||+++|+|. ..|++|
T Consensus 22 ~~mi~v~~ls~~y~~~~~--~------------~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL----~~p~~G 83 (366)
T 3tui_C 22 KHMIKLSNITKVFHQGTR--T------------IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLL----ERPTEG 83 (366)
T ss_dssp -CCEEEEEEEEEEECSSS--E------------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS----SCCSEE
T ss_pred CceEEEEeEEEEeCCCCC--C------------eEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcC----CCCCce
Confidence 457899999998864310 0 2234456788999999999999999999999999999 999999
Q ss_pred eeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC---cc
Q psy16304 230 FNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LV 306 (537)
Q Consensus 230 ~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~ 306 (537)
+|.++| .++..++. ... ...++.++++||++.+++.++. .+++...+.. .... ..
T Consensus 84 ----~I~i~G-~~i~~~~~---~~~-~~~r~~Ig~v~Q~~~l~~~~TV------------~env~~~~~~-~~~~~~~~~ 141 (366)
T 3tui_C 84 ----SVLVDG-QELTTLSE---SEL-TKARRQIGMIFQHFNLLSSRTV------------FGNVALPLEL-DNTPKDEVK 141 (366)
T ss_dssp ----EEEETT-EECSSCCH---HHH-HHHHTTEEEECSSCCCCTTSCH------------HHHHHHHHHH-SCCCHHHHH
T ss_pred ----EEEECC-EECCcCCH---HHH-HHHhCcEEEEeCCCccCCCCCH------------HHHHHHHHHh-cCCCHHHHH
Confidence 999987 44322111 111 2234679999999987765443 1111111110 0111 11
Q ss_pred ccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchh-----hHHHHHHHHHhcC
Q psy16304 307 DFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSE-----DFRTIWKQYLGTV 379 (537)
Q Consensus 307 ~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~-----~~~~l~~~~~~~~ 379 (537)
.+....+..+|+.+.. ...+.+|||||+||+ ++|++++. + |+++++| |++++ .+..+++.+.++.
T Consensus 142 ~~v~~lL~~vgL~~~~-~~~~~~LSGGqkQRV----aIArAL~~-~--P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~ 213 (366)
T 3tui_C 142 RRVTELLSLVGLGDKH-DSYPSNLSGGQKQRV----AIARALAS-N--PKVLLCDQATSALDPATTRSILELLKDINRRL 213 (366)
T ss_dssp HHHHHHHHHHTCGGGT-TCCTTTSCHHHHHHH----HHHHHTTT-C--CSEEEEESTTTTSCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCchHh-cCChhhCCHHHHHHH----HHHHHHhc-C--CCEEEEECCCccCCHHHHHHHHHHHHHHHHhC
Confidence 1233445578887765 556999999999999 99999996 5 8999999 99993 2233334554454
Q ss_pred CEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchh
Q psy16304 380 SQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLS 417 (537)
Q Consensus 380 ~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~ 417 (537)
+.+++++ +||+......+ +++|++|+++..|.+.++.
T Consensus 214 g~Tii~v-THdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~ 252 (366)
T 3tui_C 214 GLTILLI-THEMDVVKRICDCVAVISNGELIEQDTVSEVF 252 (366)
T ss_dssp CCEEEEE-ESCHHHHHHHCSEEEEEETTEEEECCBHHHHH
T ss_pred CCEEEEE-ecCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 5677777 89998876544 9999999999999888774
No 3
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.89 E-value=6e-25 Score=216.33 Aligned_cols=199 Identities=14% Similarity=0.042 Sum_probs=131.0
Q ss_pred cccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcc
Q psy16304 186 PTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTV 265 (537)
Q Consensus 186 ~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v 265 (537)
-..+++.+.+|++++|+||||||||||+++|+|. ..|++| +|.++| .++..++. .......+..++++
T Consensus 21 L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl----~~p~~G----~I~~~g-~~~~~~~~---~~~~~~~~~~i~~v 88 (235)
T 3tif_A 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCL----DKPTEG----EVYIDN-IKTNDLDD---DELTKIRRDKIGFV 88 (235)
T ss_dssp EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS----SCCSEE----EEEETT-EECTTCCH---HHHHHHHHHHEEEE
T ss_pred EEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcC----CCCCce----EEEECC-EEcccCCH---HHHHHHhhccEEEE
Confidence 3456788889999999999999999999999999 999999 999987 43321111 12222334579999
Q ss_pred ccCCCCCCCccceeeEEeecCcccccCCccccc--ccCcCC---ccccCCccEEEeccCccCccchhhhhcCCCceeeec
Q psy16304 266 SQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELT--SATHLP---LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVP 340 (537)
Q Consensus 266 ~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~--~~~~l~---~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ 340 (537)
||++.+++..+.. +++...+. ...... ...+....+..+|+.+......+.+|||||+||+
T Consensus 89 ~Q~~~l~~~~tv~------------enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv-- 154 (235)
T 3tif_A 89 FQQFNLIPLLTAL------------ENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRV-- 154 (235)
T ss_dssp CTTCCCCTTSCHH------------HHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHH--
T ss_pred ecCCccCCCCcHH------------HHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHH--
Confidence 9998876654431 11110000 000000 0011222344566655433456899999999999
Q ss_pred ccccccceeccCCceEEEEEe--cCchhhH--HH---HHHHHHhcCCEEEEEEeCCCcchhhhhh-hhhhcCCcEEEEec
Q psy16304 341 TVGFNRARVEYGNKYEVFLYD--LGGSEDF--RT---IWKQYLGTVSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLIS 412 (537)
Q Consensus 341 ti~la~all~~~e~p~lllLD--T~Gl~~~--~~---l~~~~~~~~~~vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g~ 412 (537)
++|++++. + |+++++| |+|++.. .. ++..+.++.+.+++++ +||......++ ++++++|+++..+.
T Consensus 155 --~iAral~~-~--p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~v-tHd~~~~~~~d~i~~l~~G~i~~~~~ 228 (235)
T 3tif_A 155 --AIARALAN-N--PPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVV-THDINVARFGERIIYLKDGEVEREEK 228 (235)
T ss_dssp --HHHHHHTT-C--CSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEE-CSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred --HHHHHHHc-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEE-cCCHHHHHhCCEEEEEECCEEEEEcC
Confidence 99999996 5 8999999 9999322 22 3344433334566777 88887654444 89999999998877
Q ss_pred ccch
Q psy16304 413 AKNL 416 (537)
Q Consensus 413 nkdl 416 (537)
..++
T Consensus 229 ~~~~ 232 (235)
T 3tif_A 229 LRGF 232 (235)
T ss_dssp CC--
T ss_pred hhhh
Confidence 6654
No 4
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.89 E-value=3.9e-25 Score=221.61 Aligned_cols=212 Identities=10% Similarity=0.003 Sum_probs=142.1
Q ss_pred hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304 152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN 231 (537)
Q Consensus 152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t 231 (537)
++.++++.+.|+... +...++|.+.+|++++|+||||||||||+++|+|. +.|++|
T Consensus 11 ~l~~~~l~~~~~~~~------------------vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl----~~p~~G-- 66 (266)
T 4g1u_C 11 LLEASHLHYHVQQQA------------------LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGY----LSPSHG-- 66 (266)
T ss_dssp EEEEEEEEEEETTEE------------------EEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSS----SCCSSC--
T ss_pred eEEEEeEEEEeCCee------------------EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC----CCCCCc--
Confidence 567788888765432 22345677889999999999999999999999999 999999
Q ss_pred eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCc
Q psy16304 232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSV 311 (537)
Q Consensus 232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~ 311 (537)
+|.++| .++ .... ...+.+.+++++|++.++...+. .+ ++.........-....+...
T Consensus 67 --~I~~~g-~~~-----~~~~--~~~~~~~i~~v~q~~~~~~~~tv-----~e-------~l~~~~~~~~~~~~~~~~~~ 124 (266)
T 4g1u_C 67 --ECHLLG-QNL-----NSWQ--PKALARTRAVMRQYSELAFPFSV-----SE-------VIQMGRAPYGGSQDRQALQQ 124 (266)
T ss_dssp --EEEETT-EET-----TTSC--HHHHHHHEEEECSCCCCCSCCBH-----HH-------HHHGGGTTSCSTTHHHHHHH
T ss_pred --EEEECC-EEC-----CcCC--HHHHhheEEEEecCCccCCCCCH-----HH-------HHHhhhhhcCcHHHHHHHHH
Confidence 999987 432 1111 11233678999998775443222 00 00000000000001111223
Q ss_pred cEEEeccCccCccchhhhhcCCCceeeecccccccceecc----CCceEEEEEe--cCchhh-----HHHHHHHHHhcCC
Q psy16304 312 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEY----GNKYEVFLYD--LGGSED-----FRTIWKQYLGTVS 380 (537)
Q Consensus 312 ~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~----~e~p~lllLD--T~Gl~~-----~~~l~~~~~~~~~ 380 (537)
.+..+|+.+.. ...+.+|||||+||+ ++|++++.. .+ |+++++| |+|++. +..++..+.++.+
T Consensus 125 ~l~~~~l~~~~-~~~~~~LSgGq~QRv----~iAraL~~~~~~~~~-p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~ 198 (266)
T 4g1u_C 125 VMAQTDCLALA-QRDYRVLSGGEQQRV----QLARVLAQLWQPQPT-PRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEP 198 (266)
T ss_dssp HHHHTTCSTTT-TSBGGGCCHHHHHHH----HHHHHHHHTCCSSCC-CEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHcCChhHh-cCCcccCCHHHHHHH----HHHHHHhcccccCCC-CCEEEEeCccccCCHHHHHHHHHHHHHHHHcCC
Confidence 34466776554 445899999999999 999999951 03 8999999 999932 2233345544555
Q ss_pred EEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccch
Q psy16304 381 QTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 381 ~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl 416 (537)
.+++++ +||.......+ ++++++|+++..+.+.++
T Consensus 199 ~tvi~v-tHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~ 235 (266)
T 4g1u_C 199 LAVCCV-LHDLNLAALYADRIMLLAQGKLVACGTPEEV 235 (266)
T ss_dssp EEEEEE-CSCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred CEEEEE-EcCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 677777 99998876533 999999999999988776
No 5
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.89 E-value=4.7e-25 Score=230.66 Aligned_cols=208 Identities=17% Similarity=0.127 Sum_probs=147.6
Q ss_pred hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304 152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN 231 (537)
Q Consensus 152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t 231 (537)
++.++++.+.|+... +...++|.+.+|++++|+||||||||||+++|+|. +.|++|
T Consensus 3 ~l~~~~l~~~yg~~~------------------~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl----~~p~~G-- 58 (381)
T 3rlf_A 3 SVQLQNVTKAWGEVV------------------VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGL----ETITSG-- 58 (381)
T ss_dssp CEEEEEEEEEETTEE------------------EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS----SCCSEE--
T ss_pred EEEEEeEEEEECCEE------------------EEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcC----CCCCCe--
Confidence 467788888775432 23345678889999999999999999999999999 999999
Q ss_pred eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC---cccc
Q psy16304 232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDF 308 (537)
Q Consensus 232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~ 308 (537)
+|.++| .++. ..... ++.+++|||++.+++.++. .+++...+... ... ...+
T Consensus 59 --~I~i~G-~~~~-----~~~~~----~r~ig~VfQ~~~l~p~ltV------------~eni~~~~~~~-~~~~~~~~~~ 113 (381)
T 3rlf_A 59 --DLFIGE-KRMN-----DTPPA----ERGVGMVFQSYALYPHLSV------------AENMSFGLKLA-GAKKEVINQR 113 (381)
T ss_dssp --EEEETT-EECT-----TCCGG----GSCEEEECTTCCCCTTSCH------------HHHHTHHHHHT-TCCHHHHHHH
T ss_pred --EEEECC-EECC-----CCCHH----HCCEEEEecCCcCCCCCCH------------HHHHHHHHHHc-CCCHHHHHHH
Confidence 999987 4331 11111 2569999999998877654 11121111110 111 0112
Q ss_pred CCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCE
Q psy16304 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQ 381 (537)
Q Consensus 309 ~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~ 381 (537)
....+..+|+.+.. .+.+.+|||||+||+ ++|++++. + |++++|| |++++.. ...+..+.++.+.
T Consensus 114 v~~~l~~~~L~~~~-~r~p~~LSGGqrQRV----aiArAL~~-~--P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~ 185 (381)
T 3rlf_A 114 VNQVAEVLQLAHLL-DRKPKALSGGQRQRV----AIGRTLVA-E--PSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGR 185 (381)
T ss_dssp HHHHHHHTTCGGGT-TCCGGGSCHHHHHHH----HHHHHHHH-C--CSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCchhh-cCChhHCCHHHHHHH----HHHHHHHc-C--CCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCC
Confidence 33445577887665 455999999999999 99999997 5 8999999 9999322 2233444444356
Q ss_pred EEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchh
Q psy16304 382 TLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLS 417 (537)
Q Consensus 382 vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~ 417 (537)
+++++ +||..+....+ +++|++|+++..|++.++.
T Consensus 186 tii~v-THd~~ea~~~aDri~vl~~G~i~~~g~~~~l~ 222 (381)
T 3rlf_A 186 TMIYV-THDQVEAMTLADKIVVLDAGRVAQVGKPLELY 222 (381)
T ss_dssp EEEEE-CSCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred EEEEE-ECCHHHHHHhCCEEEEEECCEEEEEeCHHHHH
Confidence 67777 89988876544 9999999999999998874
No 6
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.89 E-value=4.6e-25 Score=220.64 Aligned_cols=212 Identities=13% Similarity=0.090 Sum_probs=143.4
Q ss_pred hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304 152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN 231 (537)
Q Consensus 152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t 231 (537)
++.++++.+.|+... +..+++|.+.+|++++|+||||||||||+++|+|. +.|++|
T Consensus 24 ~l~i~~l~~~y~~~~------------------vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl----~~p~~G-- 79 (263)
T 2olj_A 24 MIDVHQLKKSFGSLE------------------VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLL----EDFDEG-- 79 (263)
T ss_dssp SEEEEEEEEEETTEE------------------EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS----SCCSEE--
T ss_pred eEEEEeEEEEECCEE------------------EEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcC----CCCCCc--
Confidence 678899998875321 12345677889999999999999999999999999 999999
Q ss_pred eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC---cccc
Q psy16304 232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDF 308 (537)
Q Consensus 232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~ 308 (537)
+|.++| .++. .+ . ... ..+++.+++++|++.+++..+.. +++.........+. ...+
T Consensus 80 --~I~~~g-~~i~-~~--~-~~~-~~~~~~i~~v~Q~~~l~~~~tv~------------e~l~~~~~~~~~~~~~~~~~~ 139 (263)
T 2olj_A 80 --EIIIDG-INLK-AK--D-TNL-NKVREEVGMVFQRFNLFPHMTVL------------NNITLAPMKVRKWPREKAEAK 139 (263)
T ss_dssp --EEEETT-EESS-ST--T-CCH-HHHHHHEEEECSSCCCCTTSCHH------------HHHHHHHHHTSCCCHHHHHHH
T ss_pred --EEEECC-EECC-Cc--c-ccH-HHHhCcEEEEeCCCcCCCCCCHH------------HHHHHHHHHHcCCCHHHHHHH
Confidence 999987 4432 11 1 111 22346799999998766543320 11100000000110 0111
Q ss_pred CCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCE
Q psy16304 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQ 381 (537)
Q Consensus 309 ~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~ 381 (537)
....+..+|+.+.. ...+.+|||||+||+ ++|++++. + |++++|| |+|++.. ..++..+.++ +.
T Consensus 140 ~~~~l~~~~L~~~~-~~~~~~LSgGqkQRv----~lAraL~~-~--p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~ 210 (263)
T 2olj_A 140 AMELLDKVGLKDKA-HAYPDSLSGGQAQRV----AIARALAM-E--PKIMLFDEPTSALDPEMVGEVLSVMKQLANE-GM 210 (263)
T ss_dssp HHHHHHHTTCGGGT-TSCGGGSCHHHHHHH----HHHHHHTT-C--CSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TC
T ss_pred HHHHHHHCCCchHh-cCChhhCCHHHHHHH----HHHHHHHC-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CC
Confidence 22334567776554 445899999999999 99999996 5 8999999 9999322 2233444344 56
Q ss_pred EEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchh
Q psy16304 382 TLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLS 417 (537)
Q Consensus 382 vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~ 417 (537)
+++++ +||.......+ ++++++|+++..+.+.++.
T Consensus 211 tvi~v-tHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 247 (263)
T 2olj_A 211 TMVVV-THEMGFAREVGDRVLFMDGGYIIEEGKPEDLF 247 (263)
T ss_dssp EEEEE-CSCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred EEEEE-cCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 67777 89988876543 8999999999888777663
No 7
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.89 E-value=2e-25 Score=223.22 Aligned_cols=219 Identities=13% Similarity=0.057 Sum_probs=144.0
Q ss_pred HHhhhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCc
Q psy16304 148 MRGILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPT 227 (537)
Q Consensus 148 m~~~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt 227 (537)
|...++.++++.+.|+... +..+++|.+.+|++++|+||||||||||+++|+|. ..|+
T Consensus 2 m~~~~l~i~~l~~~y~~~~------------------vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl----~~p~ 59 (262)
T 1b0u_A 2 MSENKLHVIDLHKRYGGHE------------------VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFL----EKPS 59 (262)
T ss_dssp ---CCEEEEEEEEEETTEE------------------EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS----SCCS
T ss_pred CCCceEEEeeEEEEECCEE------------------EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC----CCCC
Confidence 3344678889988875321 12345677889999999999999999999999999 9999
Q ss_pred eeeeeEEEEECCcEEEEEe--------ecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccc
Q psy16304 228 VGFNRARVEYGNKYEVFLY--------DLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTS 299 (537)
Q Consensus 228 ~G~t~~~i~i~g~~~i~~~--------D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~ 299 (537)
+| +|.++| .++... +.. ......+++.++++||++.+++..+.. +++......
T Consensus 60 ~G----~i~~~g-~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~v~Q~~~l~~~ltv~------------e~l~~~~~~ 120 (262)
T 1b0u_A 60 EG----AIIVNG-QNINLVRDKDGQLKVAD--KNQLRLLRTRLTMVFQHFNLWSHMTVL------------ENVMEAPIQ 120 (262)
T ss_dssp EE----EEEETT-EECCEEECTTSSEEESC--HHHHHHHHHHEEEECSSCCCCTTSCHH------------HHHHHHHHH
T ss_pred Cc----EEEECC-EEccccccccccccccC--hhhHHHHhcceEEEecCcccCCCCcHH------------HHHHhhHHH
Confidence 99 999987 443210 010 011112346799999998766544331 111000000
Q ss_pred cCcCCc---cccCCccEEEeccCcc-CccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-----
Q psy16304 300 ATHLPL---VDFRSVPILVLGLDNA-GKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF----- 368 (537)
Q Consensus 300 ~~~l~~---~~~~~~~L~llGl~~~-gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~----- 368 (537)
...... ..+....+..+|+.+. . ...+.+|||||+||+ ++|++++. + |++++|| |+|++..
T Consensus 121 ~~~~~~~~~~~~~~~~l~~~~L~~~~~-~~~~~~LSgGq~qRv----~lAraL~~-~--p~lllLDEPts~LD~~~~~~~ 192 (262)
T 1b0u_A 121 VLGLSKHDARERALKYLAKVGIDERAQ-GKYPVHLSGGQQQRV----SIARALAM-E--PDVLLFDEPTSALDPELVGEV 192 (262)
T ss_dssp TTCCCHHHHHHHHHHHHHHTTCCHHHH-TSCGGGSCHHHHHHH----HHHHHHHT-C--CSEEEEESTTTTSCHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHcCCCchhh-cCCcccCCHHHHHHH----HHHHHHhc-C--CCEEEEeCCCccCCHHHHHHH
Confidence 001100 1112234456777654 3 445899999999999 99999996 5 8999999 9999322
Q ss_pred HHHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchh
Q psy16304 369 RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLS 417 (537)
Q Consensus 369 ~~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~ 417 (537)
..++..+.++ +.+++++ +||.......+ ++++++|+++..+.+.++.
T Consensus 193 ~~~l~~l~~~-g~tvi~v-tHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 241 (262)
T 1b0u_A 193 LRIMQQLAEE-GKTMVVV-THEMGFARHVSSHVIFLHQGKIEEEGDPEQVF 241 (262)
T ss_dssp HHHHHHHHHT-TCCEEEE-CSCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHHhC-CCEEEEE-eCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 2233444444 5567777 89988876533 8999999999888877763
No 8
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.89 E-value=9.2e-25 Score=219.83 Aligned_cols=215 Identities=13% Similarity=0.125 Sum_probs=143.0
Q ss_pred hhhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304 150 GILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG 229 (537)
Q Consensus 150 ~~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G 229 (537)
+.++.++++++.|+... .+..+++|.+.+|++++|+||||||||||+++|+|. +.|++|
T Consensus 5 ~~~l~i~~ls~~y~~~~-----------------~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl----~~p~~G 63 (275)
T 3gfo_A 5 DYILKVEELNYNYSDGT-----------------HALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGI----LKPSSG 63 (275)
T ss_dssp CEEEEEEEEEEECTTSC-----------------EEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTS----SCCSEE
T ss_pred CcEEEEEEEEEEECCCC-----------------eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcC----CCCCCe
Confidence 44678899999876432 012345677889999999999999999999999999 999999
Q ss_pred eeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCC-CCCCccceeeEEeecCcccccCCcccccccCcCC---c
Q psy16304 230 FNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL-GRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---L 305 (537)
Q Consensus 230 ~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~-l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~ 305 (537)
+|.++| .++. . .......++..++++||++. .+...+. .+ ++...... .... .
T Consensus 64 ----~I~~~G-~~i~---~--~~~~~~~~~~~ig~v~Q~~~~~~~~~tv-----~e-------~l~~~~~~-~~~~~~~~ 120 (275)
T 3gfo_A 64 ----RILFDN-KPID---Y--SRKGIMKLRESIGIVFQDPDNQLFSASV-----YQ-------DVSFGAVN-MKLPEDEI 120 (275)
T ss_dssp ----EEEETT-EECC---C--SHHHHHHHHHSEEEECSSGGGTCCSSBH-----HH-------HHHHHHHT-SCCCHHHH
T ss_pred ----EEEECC-EECC---c--ccccHHHHhCcEEEEEcCcccccccCcH-----HH-------HHHHHHHH-cCCCHHHH
Confidence 999987 4431 1 11111234478999999873 1111111 00 00000000 0010 0
Q ss_pred cccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhh-----HHHHHHHHHhc
Q psy16304 306 VDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSED-----FRTIWKQYLGT 378 (537)
Q Consensus 306 ~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~-----~~~l~~~~~~~ 378 (537)
..+....+..+|+.... ...+.+|||||+||+ ++|++++. + |++++|| |+|++. +..++..+.++
T Consensus 121 ~~~~~~~l~~~~L~~~~-~~~~~~LSgGqkQRv----~iAraL~~-~--P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~ 192 (275)
T 3gfo_A 121 RKRVDNALKRTGIEHLK-DKPTHCLSFGQKKRV----AIAGVLVM-E--PKVLILDEPTAGLDPMGVSEIMKLLVEMQKE 192 (275)
T ss_dssp HHHHHHHHHHTTCGGGT-TSBGGGSCHHHHHHH----HHHHHHTT-C--CSEEEEECTTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCchhh-cCCcccCCHHHHHHH----HHHHHHHc-C--CCEEEEECccccCCHHHHHHHHHHHHHHHhh
Confidence 11223345567776654 455899999999999 99999996 5 8999999 999932 22233444422
Q ss_pred CCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchh
Q psy16304 379 VSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLS 417 (537)
Q Consensus 379 ~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~ 417 (537)
.+.+++++ +||.......+ ++++++|+++..|.+.++.
T Consensus 193 ~g~tvi~v-tHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~ 232 (275)
T 3gfo_A 193 LGITIIIA-THDIDIVPLYCDNVFVMKEGRVILQGNPKEVF 232 (275)
T ss_dssp HCCEEEEE-ESCCSSGGGGCSEEEEEETTEEEEEECHHHHT
T ss_pred CCCEEEEE-ecCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 24566666 78888776533 9999999999999988763
No 9
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.88 E-value=1.4e-24 Score=225.20 Aligned_cols=190 Identities=16% Similarity=0.084 Sum_probs=134.2
Q ss_pred cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304 188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ 267 (537)
Q Consensus 188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q 267 (537)
.++|.+.+|++++|+||||||||||+++|+|. ..|++| +|.++| ..+ ..... .++.+++|||
T Consensus 18 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl----~~p~~G----~I~~~g-~~i-----~~~~~----~~r~ig~v~Q 79 (348)
T 3d31_A 18 NLSLKVESGEYFVILGPTGAGKTLFLELIAGF----HVPDSG----RILLDG-KDV-----TDLSP----EKHDIAFVYQ 79 (348)
T ss_dssp EEEEEECTTCEEEEECCCTHHHHHHHHHHHTS----SCCSEE----EEEETT-EEC-----TTSCH----HHHTCEEECT
T ss_pred eeEEEEcCCCEEEEECCCCccHHHHHHHHHcC----CCCCCc----EEEECC-EEC-----CCCch----hhCcEEEEec
Confidence 45677889999999999999999999999999 999999 999987 433 11122 2367999999
Q ss_pred CCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccc
Q psy16304 268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA 347 (537)
Q Consensus 268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~a 347 (537)
++.+++.++. .+++...+... ......+....+..+|+.+.. .+.+.+|||||+||+ ++|++
T Consensus 80 ~~~l~~~ltv------------~enl~~~~~~~-~~~~~~~v~~~l~~~~L~~~~-~~~~~~LSgGq~QRv----alAra 141 (348)
T 3d31_A 80 NYSLFPHMNV------------KKNLEFGMRMK-KIKDPKRVLDTARDLKIEHLL-DRNPLTLSGGEQQRV----ALARA 141 (348)
T ss_dssp TCCCCTTSCH------------HHHHHHHHHHH-CCCCHHHHHHHHHHTTCTTTT-TSCGGGSCHHHHHHH----HHHHH
T ss_pred CcccCCCCCH------------HHHHHHHHHHc-CCCHHHHHHHHHHHcCCchHh-cCChhhCCHHHHHHH----HHHHH
Confidence 9988776544 11111101000 000001223345567877665 455899999999999 99999
Q ss_pred eeccCCceEEEEEe--cCchhh-----HHHHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchh
Q psy16304 348 RVEYGNKYEVFLYD--LGGSED-----FRTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLS 417 (537)
Q Consensus 348 ll~~~e~p~lllLD--T~Gl~~-----~~~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~ 417 (537)
++. + |++++|| |++++. +...++.+.++.+.+++++ +||..++...+ +++|++|+++..+++.++.
T Consensus 142 L~~-~--P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~v-THd~~~~~~~adri~vl~~G~i~~~g~~~~~~ 216 (348)
T 3d31_A 142 LVT-N--PKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHI-THDQTEARIMADRIAVVMDGKLIQVGKPEEIF 216 (348)
T ss_dssp TTS-C--CSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEE-ESCHHHHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred HHc-C--CCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 996 5 8999999 999932 2233344444445566666 79988776543 8999999999999888773
No 10
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.88 E-value=1e-24 Score=213.22 Aligned_cols=208 Identities=15% Similarity=0.112 Sum_probs=137.0
Q ss_pred hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304 152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN 231 (537)
Q Consensus 152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t 231 (537)
++.++++.+.|+... +-.++++.+.+|++++|+||||||||||+++|+|. ..|++|
T Consensus 4 ~l~~~~l~~~y~~~~------------------~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl----~~p~~G-- 59 (224)
T 2pcj_A 4 ILRAENIKKVIRGYE------------------ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLL----DAPTEG-- 59 (224)
T ss_dssp EEEEEEEEEEETTEE------------------EEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTS----SCCSEE--
T ss_pred EEEEEeEEEEECCEe------------------eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC----CCCCce--
Confidence 467788888775421 12345677889999999999999999999999999 999999
Q ss_pred eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC---cccc
Q psy16304 232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDF 308 (537)
Q Consensus 232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~ 308 (537)
+|.++| .++..++. .......+..+++++|++.+++..+.. +++..... ..... ...+
T Consensus 60 --~i~~~g-~~~~~~~~---~~~~~~~~~~i~~v~q~~~l~~~~tv~------------e~l~~~~~-~~~~~~~~~~~~ 120 (224)
T 2pcj_A 60 --KVFLEG-KEVDYTNE---KELSLLRNRKLGFVFQFHYLIPELTAL------------ENVIVPML-KMGKPKKEAKER 120 (224)
T ss_dssp --EEEETT-EECCSSCH---HHHHHHHHHHEEEECSSCCCCTTSCHH------------HHHHHHHH-HTTCCHHHHHHH
T ss_pred --EEEECC-EECCCCCH---HHHHHHHhCcEEEEecCcccCCCCCHH------------HHHHhHHH-HcCCCHHHHHHH
Confidence 999987 44321110 111112236799999998766543320 01100000 00000 0111
Q ss_pred CCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCE
Q psy16304 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQ 381 (537)
Q Consensus 309 ~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~ 381 (537)
....+..+|+.+.. ...+.+|||||+||+ ++|++++. + |++++|| |+|++.. ...+..+.++ +.
T Consensus 121 ~~~~l~~~~l~~~~-~~~~~~LSgGq~qrv----~laral~~-~--p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~-g~ 191 (224)
T 2pcj_A 121 GEYLLSELGLGDKL-SRKPYELSGGEQQRV----AIARALAN-E--PILLFADEPTGNLDSANTKRVMDIFLKINEG-GT 191 (224)
T ss_dssp HHHHHHHTTCTTCT-TCCGGGSCHHHHHHH----HHHHHTTT-C--CSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TC
T ss_pred HHHHHHHcCCchhh-hCChhhCCHHHHHHH----HHHHHHHc-C--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CC
Confidence 22334467776554 455899999999999 99999996 5 8999999 9999332 2233444344 55
Q ss_pred EEEEEeCCCcchhhhhh-hhhhcCCcEEEEec
Q psy16304 382 TLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLIS 412 (537)
Q Consensus 382 vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g~ 412 (537)
+++++ +||......++ ++++++|+++..|+
T Consensus 192 tvi~v-tHd~~~~~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 192 SIVMV-THERELAELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp EEEEE-CSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred EEEEE-cCCHHHHHhCCEEEEEECCEEEEEee
Confidence 67777 89987664344 88899999987764
No 11
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.88 E-value=2.3e-24 Score=214.88 Aligned_cols=209 Identities=15% Similarity=0.111 Sum_probs=140.1
Q ss_pred hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304 152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN 231 (537)
Q Consensus 152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t 231 (537)
++.++++.+.|+... +..++++.+.+|++++|+||||||||||+++|+|. +.|++|
T Consensus 7 ~l~i~~l~~~y~~~~------------------vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl----~~p~~G-- 62 (257)
T 1g6h_A 7 ILRTENIVKYFGEFK------------------ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGF----LKADEG-- 62 (257)
T ss_dssp EEEEEEEEEEETTEE------------------EEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTS----SCCSEE--
T ss_pred EEEEeeeEEEECCEe------------------eEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCc--
Confidence 467788888775322 12345677889999999999999999999999999 999999
Q ss_pred eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccc-cCc--------
Q psy16304 232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTS-ATH-------- 302 (537)
Q Consensus 232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~-~~~-------- 302 (537)
+|.++| .++ .... ....++..+++++|++.+++..+. .+ ++...... ...
T Consensus 63 --~i~~~g-~~~-----~~~~-~~~~~~~~i~~v~q~~~l~~~~tv-----~e-------nl~~~~~~~~~~~~~~~~~~ 121 (257)
T 1g6h_A 63 --RVYFEN-KDI-----TNKE-PAELYHYGIVRTFQTPQPLKEMTV-----LE-------NLLIGEICPGESPLNSLFYK 121 (257)
T ss_dssp --EEEETT-EEC-----TTCC-HHHHHHHTEEECCCCCGGGGGSBH-----HH-------HHHGGGTSTTSCHHHHHHHC
T ss_pred --EEEECC-EEC-----CCCC-HHHHHhCCEEEEccCCccCCCCcH-----HH-------HHHHHHhhhccCcccccccc
Confidence 999987 432 1111 112234679999999875543332 01 00000000 000
Q ss_pred ---CC---ccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-----H
Q psy16304 303 ---LP---LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----R 369 (537)
Q Consensus 303 ---l~---~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~ 369 (537)
.. ...+....+..+|+.... ...+.+|||||+||+ ++|++++. + |++++|| |+|++.. .
T Consensus 122 ~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgGqkQrv----~iAraL~~-~--p~lllLDEPts~LD~~~~~~l~ 193 (257)
T 1g6h_A 122 KWIPKEEEMVEKAFKILEFLKLSHLY-DRKAGELSGGQMKLV----EIGRALMT-N--PKMIVMDEPIAGVAPGLAHDIF 193 (257)
T ss_dssp SSCCCCHHHHHHHHHHHHHTTCGGGT-TSBGGGSCHHHHHHH----HHHHHHHT-C--CSEEEEESTTTTCCHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHcCCchhh-CCCchhCCHHHHHHH----HHHHHHHc-C--CCEEEEeCCccCCCHHHHHHHH
Confidence 00 011122344567876654 445899999999999 99999996 5 8999999 9999322 2
Q ss_pred HHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccc
Q psy16304 370 TIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKN 415 (537)
Q Consensus 370 ~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkd 415 (537)
.++..+.++ +.+++++ +||.......+ ++++++|+++..+.+.+
T Consensus 194 ~~l~~l~~~-g~tvi~v-tHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 194 NHVLELKAK-GITFLII-EHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239 (257)
T ss_dssp HHHHHHHHT-TCEEEEE-CSCCSTTGGGCSEEEEEETTEEEEEEESHH
T ss_pred HHHHHHHHC-CCEEEEE-ecCHHHHHHhCCEEEEEECCEEEEEeCHHH
Confidence 233444343 4567777 89988776433 88999999998887766
No 12
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.88 E-value=2.2e-24 Score=224.46 Aligned_cols=208 Identities=15% Similarity=0.104 Sum_probs=143.9
Q ss_pred hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304 152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN 231 (537)
Q Consensus 152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t 231 (537)
++.++++.+.|+... +...++|.+.+|++++|+||||||||||+++|+|. ..|++|
T Consensus 3 ~l~~~~l~~~y~~~~------------------vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl----~~p~~G-- 58 (359)
T 2yyz_A 3 SIRVVNLKKYFGKVK------------------AVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGI----YKPTSG-- 58 (359)
T ss_dssp CEEEEEEEEEETTEE------------------EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTS----SCCSEE--
T ss_pred EEEEEEEEEEECCEE------------------EEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCC----CCCCcc--
Confidence 466778888765321 22345677889999999999999999999999999 999999
Q ss_pred eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC---cccc
Q psy16304 232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LVDF 308 (537)
Q Consensus 232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~~~ 308 (537)
+|.++| .++. ..... ++.+++|||++.+++.++. .+++...+.. .... ...+
T Consensus 59 --~I~i~g-~~i~-----~~~~~----~r~ig~v~Q~~~l~~~ltv------------~eni~~~~~~-~~~~~~~~~~~ 113 (359)
T 2yyz_A 59 --EIYFDD-VLVN-----DIPPK----YREVGMVFQNYALYPHMTV------------FENIAFPLRA-RRISKDEVEKR 113 (359)
T ss_dssp --EEEETT-EECT-----TSCGG----GTTEEEECSSCCCCTTSCH------------HHHHHGGGSS-SCSHHHHTTHH
T ss_pred --EEEECC-EECC-----CCChh----hCcEEEEecCcccCCCCCH------------HHHHHHHHHh-cCCCHHHHHHH
Confidence 999987 4331 11111 2679999999988776554 1111111100 0110 0112
Q ss_pred CCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCE
Q psy16304 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQ 381 (537)
Q Consensus 309 ~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~ 381 (537)
....+..+|+.+.. .+.+.+|||||+||+ ++|++++. + |++++|| |++++.. ...+..+.++.+.
T Consensus 114 v~~~l~~~~L~~~~-~r~~~~LSgGq~QRv----alArAL~~-~--P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~ 185 (359)
T 2yyz_A 114 VVEIARKLLIDNLL-DRKPTQLSGGQQQRV----ALARALVK-Q--PKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGI 185 (359)
T ss_dssp HHHHHHHTTCGGGT-TSCGGGSCHHHHHHH----HHHHHHTT-C--CSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCchHh-cCChhhCCHHHHHHH----HHHHHHHc-C--CCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 23345577887665 455999999999999 99999996 5 8999999 9999322 2223344444345
Q ss_pred EEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchh
Q psy16304 382 TLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLS 417 (537)
Q Consensus 382 vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~ 417 (537)
+++++ +||..++...+ +++|++|+++..|++.++.
T Consensus 186 tvi~v-THd~~~~~~~adri~vl~~G~i~~~g~~~~l~ 222 (359)
T 2yyz_A 186 TSVYV-THDQAEAMTMASRIAVFNQGKLVQYGTPDEVY 222 (359)
T ss_dssp EEEEE-ESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred EEEEE-cCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 66666 79988775433 8999999999999988774
No 13
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.88 E-value=1.6e-24 Score=225.30 Aligned_cols=215 Identities=18% Similarity=0.128 Sum_probs=145.3
Q ss_pred hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304 152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN 231 (537)
Q Consensus 152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t 231 (537)
++.++++.+.|+.... .+...++|.+.+|++++|+||||||||||+++|+|. ..|++|
T Consensus 3 ~l~i~~l~~~y~~~~~----------------~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl----~~p~~G-- 60 (353)
T 1oxx_K 3 RIIVKNVSKVFKKGKV----------------VALDNVNINIENGERFGILGPSGAGKTTFMRIIAGL----DVPSTG-- 60 (353)
T ss_dssp CEEEEEEEEEEGGGTE----------------EEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTS----SCCSEE--
T ss_pred EEEEEeEEEEECCEee----------------eeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCC----CCCCce--
Confidence 3567778887654220 022345677889999999999999999999999999 999999
Q ss_pred eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCc---ccc
Q psy16304 232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPL---VDF 308 (537)
Q Consensus 232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~---~~~ 308 (537)
+|.++| .++........... ++.+++|||++.+++.++. .+++...+.. ..... ..+
T Consensus 61 --~I~i~g-~~i~~~~~~~~~~~----~r~ig~v~Q~~~l~~~ltv------------~eni~~~~~~-~~~~~~~~~~~ 120 (353)
T 1oxx_K 61 --ELYFDD-RLVASNGKLIVPPE----DRKIGMVFQTWALYPNLTA------------FENIAFPLTN-MKMSKEEIRKR 120 (353)
T ss_dssp --EEEETT-EEEEETTEESSCGG----GSCEEEEETTSCCCTTSCH------------HHHHHGGGTT-SSCCHHHHHHH
T ss_pred --EEEECC-EECcccccccCChh----hCCEEEEeCCCccCCCCCH------------HHHHHHHHHH-cCCCHHHHHHH
Confidence 999997 55532100001112 3679999999988776544 1111111100 01110 112
Q ss_pred CCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchh--h---HHHHHHHHHhcCCE
Q psy16304 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSE--D---FRTIWKQYLGTVSQ 381 (537)
Q Consensus 309 ~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~--~---~~~l~~~~~~~~~~ 381 (537)
....+..+|+.+.. .+.+.+|||||+||+ ++|++++. + |++++|| |++++ . ....+..+.++.+.
T Consensus 121 v~~~l~~~~L~~~~-~~~~~~LSGGq~QRv----alAraL~~-~--P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~ 192 (353)
T 1oxx_K 121 VEEVAKILDIHHVL-NHFPRELSGAQQQRV----ALARALVK-D--PSLLLLDEPFSNLDARMRDSARALVKEVQSRLGV 192 (353)
T ss_dssp HHHHHHHTTCGGGT-TSCGGGSCHHHHHHH----HHHHHHTT-C--CSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCchHh-cCChhhCCHHHHHHH----HHHHHHHh-C--CCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 23445567887665 455899999999999 99999996 5 8999999 99992 2 22233444444345
Q ss_pred EEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchh
Q psy16304 382 TLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLS 417 (537)
Q Consensus 382 vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~ 417 (537)
+++++ +||..++...+ +++|++|+++..+++.++.
T Consensus 193 tvi~v-THd~~~~~~~adri~vl~~G~i~~~g~~~~l~ 229 (353)
T 1oxx_K 193 TLLVV-SHDPADIFAIADRVGVLVKGKLVQVGKPEDLY 229 (353)
T ss_dssp EEEEE-ESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred EEEEE-eCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 66666 79988776543 8999999999999888774
No 14
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.88 E-value=1.9e-24 Score=224.49 Aligned_cols=209 Identities=16% Similarity=0.134 Sum_probs=145.3
Q ss_pred hhcccccCCCcc-cCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304 151 ILMGIQNVPNFQ-TSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG 229 (537)
Q Consensus 151 ~li~~~~l~k~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G 229 (537)
.++.++++.+.| +...+ ..+++|.+.+|++++|+||||||||||+++|+|. ..|++|
T Consensus 13 ~~l~~~~l~~~y~g~~~v------------------l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl----~~p~~G 70 (355)
T 1z47_A 13 MTIEFVGVEKIYPGGARS------------------VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGL----ERPTKG 70 (355)
T ss_dssp EEEEEEEEEECCTTSTTC------------------EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTS----SCCSEE
T ss_pred ceEEEEEEEEEEcCCCEE------------------EeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCC----CCCCcc
Confidence 467788888887 43221 2345677889999999999999999999999999 999999
Q ss_pred eeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC---cc
Q psy16304 230 FNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---LV 306 (537)
Q Consensus 230 ~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~~ 306 (537)
+|.++| .++. ..... ++.+++|||++.+++.++. .+++...+.. ..+. ..
T Consensus 71 ----~I~i~g-~~i~-----~~~~~----~r~ig~v~Q~~~l~~~ltv------------~eni~~~l~~-~~~~~~~~~ 123 (355)
T 1z47_A 71 ----DVWIGG-KRVT-----DLPPQ----KRNVGLVFQNYALFQHMTV------------YDNVSFGLRE-KRVPKDEMD 123 (355)
T ss_dssp ----EEEETT-EECT-----TCCGG----GSSEEEECGGGCCCTTSCH------------HHHHHHHHHH-TTCCHHHHH
T ss_pred ----EEEECC-EECC-----cCChh----hCcEEEEecCcccCCCCCH------------HHHHHHHHHH-cCCCHHHHH
Confidence 999987 4331 11122 3679999999887776544 1111110100 0111 01
Q ss_pred ccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcC
Q psy16304 307 DFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTV 379 (537)
Q Consensus 307 ~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~ 379 (537)
.+....+..+|+.+.. .+.+.+|||||+||+ ++|++++. + |++++|| |++++.. ...+..+.++.
T Consensus 124 ~~v~~~l~~~gL~~~~-~r~~~~LSGGq~QRv----alArAL~~-~--P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~ 195 (355)
T 1z47_A 124 ARVRELLRFMRLESYA-NRFPHELSGGQQQRV----ALARALAP-R--PQVLLFDEPFAAIDTQIRRELRTFVRQVHDEM 195 (355)
T ss_dssp HHHHHHHHHTTCGGGT-TSCGGGSCHHHHHHH----HHHHHHTT-C--CSEEEEESTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCChhHh-cCCcccCCHHHHHHH----HHHHHHHc-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc
Confidence 1223345567877665 455999999999999 99999996 5 8999999 9999322 22333444443
Q ss_pred CEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchh
Q psy16304 380 SQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLS 417 (537)
Q Consensus 380 ~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~ 417 (537)
+.+++++ +||..++...+ +++|++|+++..+++.++.
T Consensus 196 g~tvi~v-THd~~~a~~~adri~vl~~G~i~~~g~~~~l~ 234 (355)
T 1z47_A 196 GVTSVFV-THDQEEALEVADRVLVLHEGNVEQFGTPEEVY 234 (355)
T ss_dssp TCEEEEE-CSCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred CCEEEEE-CCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 5567777 89988876543 8999999999999888774
No 15
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.88 E-value=3.9e-24 Score=223.63 Aligned_cols=208 Identities=17% Similarity=0.132 Sum_probs=138.5
Q ss_pred hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304 152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN 231 (537)
Q Consensus 152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t 231 (537)
++.++++.+.|+... +...++|.+.+|++++|+||||||||||+++|+|. ..|++|
T Consensus 11 ~l~~~~l~~~y~~~~------------------vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl----~~p~~G-- 66 (372)
T 1v43_A 11 EVKLENLTKRFGNFT------------------AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGL----EEPTEG-- 66 (372)
T ss_dssp CEEEEEEEEEETTEE------------------EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS----SCCSEE--
T ss_pred eEEEEEEEEEECCEE------------------EEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcC----CCCCce--
Confidence 467788888775321 12345677889999999999999999999999999 999999
Q ss_pred eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCc---ccc
Q psy16304 232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPL---VDF 308 (537)
Q Consensus 232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~---~~~ 308 (537)
+|.++| ..+. ..... ++.+++|||++.+++.++. .+++...+.. ..... ..+
T Consensus 67 --~I~i~g-~~i~-----~~~~~----~r~ig~v~Q~~~l~~~ltv------------~eni~~~~~~-~~~~~~~~~~~ 121 (372)
T 1v43_A 67 --RIYFGD-RDVT-----YLPPK----DRNISMVFQSYAVWPHMTV------------YENIAFPLKI-KKFPKDEIDKR 121 (372)
T ss_dssp --EEEETT-EECT-----TSCGG----GGTEEEEEC------CCCH------------HHHHHTTCC---CCCHHHHHHH
T ss_pred --EEEECC-EECC-----CCChh----hCcEEEEecCcccCCCCCH------------HHHHHHHHHh-cCCCHHHHHHH
Confidence 999987 4331 11111 2679999999887766543 1111110100 00100 112
Q ss_pred CCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCE
Q psy16304 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQ 381 (537)
Q Consensus 309 ~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~ 381 (537)
....+..+|+.+.. .+.+.+|||||+||+ ++|++++. + |++++|| |++++.. ...+..+.++.+.
T Consensus 122 v~~~l~~~~L~~~~-~r~~~~LSGGq~QRv----alArAL~~-~--P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~ 193 (372)
T 1v43_A 122 VRWAAELLQIEELL-NRYPAQLSGGQRQRV----AVARAIVV-E--PDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKV 193 (372)
T ss_dssp HHHHHHHTTCGGGT-TSCTTTCCSSCHHHH----HHHHHHTT-C--CSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCChhHh-cCChhhCCHHHHHHH----HHHHHHhc-C--CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCC
Confidence 23345567887665 445899999999999 99999996 5 8999999 9999322 2233444444345
Q ss_pred EEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchh
Q psy16304 382 TLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLS 417 (537)
Q Consensus 382 vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~ 417 (537)
+++++ +||..++...+ +++|++|+++..+++.++.
T Consensus 194 tvi~v-THd~~~a~~~adri~vl~~G~i~~~g~~~~l~ 230 (372)
T 1v43_A 194 TTIYV-THDQVEAMTMGDRIAVMNRGQLLQIGSPTEVY 230 (372)
T ss_dssp EEEEE-ESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred EEEEE-eCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 66666 79988775433 9999999999999988774
No 16
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.87 E-value=2.7e-24 Score=214.31 Aligned_cols=210 Identities=13% Similarity=0.041 Sum_probs=141.4
Q ss_pred hhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceee
Q psy16304 151 ILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF 230 (537)
Q Consensus 151 ~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~ 230 (537)
.++.++++.+.|+... +...+++.+.+|++++|+||||||||||+++|+|. ..|++|
T Consensus 14 ~~l~i~~l~~~y~~~~------------------vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl----~~p~~G- 70 (256)
T 1vpl_A 14 GAVVVKDLRKRIGKKE------------------ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTL----IKPSSG- 70 (256)
T ss_dssp CCEEEEEEEEEETTEE------------------EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS----SCCSEE-
T ss_pred CeEEEEEEEEEECCEE------------------EEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcC----CCCCce-
Confidence 4677888888775321 12345677889999999999999999999999999 999999
Q ss_pred eeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCc---cc
Q psy16304 231 NRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPL---VD 307 (537)
Q Consensus 231 t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~---~~ 307 (537)
+|.++| .++ ... ...++..+++++|++.+++..+.. +++..... ...... ..
T Consensus 71 ---~I~~~g-~~~-----~~~---~~~~~~~i~~v~q~~~l~~~ltv~------------enl~~~~~-~~~~~~~~~~~ 125 (256)
T 1vpl_A 71 ---IVTVFG-KNV-----VEE---PHEVRKLISYLPEEAGAYRNMQGI------------EYLRFVAG-FYASSSSEIEE 125 (256)
T ss_dssp ---EEEETT-EET-----TTC---HHHHHTTEEEECTTCCCCTTSBHH------------HHHHHHHH-HHCCCHHHHHH
T ss_pred ---EEEECC-EEC-----Ccc---HHHHhhcEEEEcCCCCCCCCCcHH------------HHHHHHHH-HcCCChHHHHH
Confidence 999987 332 111 122346799999998766543320 00100000 000000 01
Q ss_pred cCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH--HHH---HHHHHhcCC
Q psy16304 308 FRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTI---WKQYLGTVS 380 (537)
Q Consensus 308 ~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l---~~~~~~~~~ 380 (537)
+....+..+|+.+.. ...+.+|||||+||+ ++|++++. + |++++|| |+|++.. ..+ +..+.+. +
T Consensus 126 ~~~~~l~~~gL~~~~-~~~~~~LSgGq~qRv----~lAraL~~-~--p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g 196 (256)
T 1vpl_A 126 MVERATEIAGLGEKI-KDRVSTYSKGMVRKL----LIARALMV-N--PRLAILDEPTSGLDVLNAREVRKILKQASQE-G 196 (256)
T ss_dssp HHHHHHHHHCCGGGG-GSBGGGCCHHHHHHH----HHHHHHTT-C--CSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-T
T ss_pred HHHHHHHHCCCchHh-cCChhhCCHHHHHHH----HHHHHHHc-C--CCEEEEeCCccccCHHHHHHHHHHHHHHHhC-C
Confidence 122334466776654 344899999999999 99999996 5 8999999 9999322 223 3344333 4
Q ss_pred EEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchhh
Q psy16304 381 QTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLSN 418 (537)
Q Consensus 381 ~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~~ 418 (537)
.+++++ +||.......+ ++++++|+++..+.+.++.+
T Consensus 197 ~tiiiv-tHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 197 LTILVS-SHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp CEEEEE-ECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred CEEEEE-cCCHHHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 566666 89988776533 88999999998887777644
No 17
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.87 E-value=3.3e-24 Score=223.43 Aligned_cols=208 Identities=16% Similarity=0.120 Sum_probs=143.6
Q ss_pred hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304 152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN 231 (537)
Q Consensus 152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t 231 (537)
++.++++.+.|+... +...++|.+.+|++++|+||||||||||+++|+|. ..|++|
T Consensus 3 ~l~~~~l~~~y~~~~------------------vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl----~~p~~G-- 58 (362)
T 2it1_A 3 EIKLENIVKKFGNFT------------------ALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGI----YKPTSG-- 58 (362)
T ss_dssp CEEEEEEEEESSSSE------------------EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS----SCCSEE--
T ss_pred EEEEEeEEEEECCEE------------------EEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcC----CCCCce--
Confidence 356778888775322 12345677889999999999999999999999999 999999
Q ss_pred eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCc---ccc
Q psy16304 232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPL---VDF 308 (537)
Q Consensus 232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~---~~~ 308 (537)
+|.++| .++. ..... ++.+++|||++.+++.++. .+++...+.. ..... ..+
T Consensus 59 --~I~i~g-~~i~-----~~~~~----~r~ig~v~Q~~~l~~~ltv------------~eni~~~~~~-~~~~~~~~~~~ 113 (362)
T 2it1_A 59 --KIYFDE-KDVT-----ELPPK----DRNVGLVFQNWALYPHMTV------------YKNIAFPLEL-RKAPREEIDKK 113 (362)
T ss_dssp --EEEETT-EECT-----TSCGG----GTTEEEECTTCCCCTTSCH------------HHHHHHHHHH-TTCCHHHHHHH
T ss_pred --EEEECC-EECC-----cCCHh----HCcEEEEecCcccCCCCCH------------HHHHHHHHHh-cCCCHHHHHHH
Confidence 999987 4331 11111 2579999999988776544 1111110100 01100 112
Q ss_pred CCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCE
Q psy16304 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQ 381 (537)
Q Consensus 309 ~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~ 381 (537)
....+..+|+.+.. .+.+.+|||||+||+ ++|++++. + |++++|| |++++.. ...++.+.++.+.
T Consensus 114 v~~~l~~~~L~~~~-~r~~~~LSGGq~QRv----alArAL~~-~--P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~ 185 (362)
T 2it1_A 114 VREVAKMLHIDKLL-NRYPWQLSGGQQQRV----AIARALVK-E--PEVLLLDEPLSNLDALLRLEVRAELKRLQKELGI 185 (362)
T ss_dssp HHHHHHHTTCTTCT-TCCGGGSCHHHHHHH----HHHHHHTT-C--CSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCchHh-hCChhhCCHHHHHHH----HHHHHHHc-C--CCEEEEECccccCCHHHHHHHHHHHHHHHHhCCC
Confidence 23345577887665 455999999999999 99999996 5 8999999 9999322 2233444444345
Q ss_pred EEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchh
Q psy16304 382 TLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLS 417 (537)
Q Consensus 382 vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~ 417 (537)
+++++ +||..++...+ +++|++|+++..+++.++.
T Consensus 186 tvi~v-THd~~~a~~~adri~vl~~G~i~~~g~~~~~~ 222 (362)
T 2it1_A 186 TTVYV-THDQAEALAMADRIAVIREGEILQVGTPDEVY 222 (362)
T ss_dssp EEEEE-ESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred EEEEE-CCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 66666 79988765433 8999999999999888774
No 18
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.87 E-value=1.9e-24 Score=213.35 Aligned_cols=212 Identities=13% Similarity=0.113 Sum_probs=137.7
Q ss_pred hhhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304 150 GILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG 229 (537)
Q Consensus 150 ~~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G 229 (537)
..++.++++.+.|+... +-..+++.+.+|++++|+||||||||||+++|+|. +.|++|
T Consensus 4 ~~~l~~~~l~~~y~~~~------------------vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl----~~p~~G 61 (240)
T 1ji0_A 4 DIVLEVQSLHVYYGAIH------------------AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGL----VRAQKG 61 (240)
T ss_dssp SEEEEEEEEEEEETTEE------------------EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTS----SCCSEE
T ss_pred CceEEEEeEEEEECCee------------------EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCc
Confidence 34577888888775321 12345677889999999999999999999999999 999999
Q ss_pred eeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccc-cccCcCCcccc
Q psy16304 230 FNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDEL-TSATHLPLVDF 308 (537)
Q Consensus 230 ~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l-~~~~~l~~~~~ 308 (537)
+|.++| .++. .. ......+..+++++|++.+++..+.. +++.... .....-.....
T Consensus 62 ----~i~~~g-~~~~-----~~-~~~~~~~~~i~~v~q~~~l~~~ltv~------------enl~~~~~~~~~~~~~~~~ 118 (240)
T 1ji0_A 62 ----KIIFNG-QDIT-----NK-PAHVINRMGIALVPEGRRIFPELTVY------------ENLMMGAYNRKDKEGIKRD 118 (240)
T ss_dssp ----EEEETT-EECT-----TC-CHHHHHHTTEEEECSSCCCCTTSBHH------------HHHHGGGTTCCCSSHHHHH
T ss_pred ----eEEECC-EECC-----CC-CHHHHHhCCEEEEecCCccCCCCcHH------------HHHHHhhhcCCCHHHHHHH
Confidence 999987 4331 11 11122235699999998766543320 0000000 00000000011
Q ss_pred CCccEEEe-ccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH--H---HHHHHHHhcCC
Q psy16304 309 RSVPILVL-GLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--R---TIWKQYLGTVS 380 (537)
Q Consensus 309 ~~~~L~ll-Gl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~---~l~~~~~~~~~ 380 (537)
....+..+ |+.... ...+.+|||||+||+ ++|++++. + |++++|| |+|++.. . ..+..+.+ .+
T Consensus 119 ~~~~l~~~~~l~~~~-~~~~~~LSgGq~qrv----~lAraL~~-~--p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~g 189 (240)
T 1ji0_A 119 LEWIFSLFPRLKERL-KQLGGTLSGGEQQML----AIGRALMS-R--PKLLMMDEPSLGLAPILVSEVFEVIQKINQ-EG 189 (240)
T ss_dssp HHHHHHHCHHHHTTT-TSBSSSSCHHHHHHH----HHHHHHTT-C--CSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHcccHhhHh-cCChhhCCHHHHHHH----HHHHHHHc-C--CCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CC
Confidence 12223345 365544 344889999999999 99999996 5 8999999 9999322 2 23334433 34
Q ss_pred EEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccch
Q psy16304 381 QTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 381 ~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl 416 (537)
.+++++ +||.......+ ++++++|+++..+.+.++
T Consensus 190 ~tvi~v-tHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 226 (240)
T 1ji0_A 190 TTILLV-EQNALGALKVAHYGYVLETGQIVLEGKASEL 226 (240)
T ss_dssp CCEEEE-ESCHHHHHHHCSEEEEEETTEEEEEEEHHHH
T ss_pred CEEEEE-ecCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 556666 79987665433 889999999888777665
No 19
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.87 E-value=4.9e-24 Score=223.04 Aligned_cols=212 Identities=17% Similarity=0.120 Sum_probs=144.8
Q ss_pred hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304 152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN 231 (537)
Q Consensus 152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t 231 (537)
++.++++.+.|+... +...++|.+.+|++++|+||||||||||+++|+|. ..|++|
T Consensus 3 ~l~~~~l~~~y~~~~------------------vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl----~~p~~G-- 58 (372)
T 1g29_1 3 GVRLVDVWKVFGEVT------------------AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGL----EEPSRG-- 58 (372)
T ss_dssp EEEEEEEEEEETTEE------------------EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTS----SCCSEE--
T ss_pred EEEEEeEEEEECCEE------------------EEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcC----CCCCcc--
Confidence 356778888765321 12345677889999999999999999999999999 999999
Q ss_pred eEEEEECCcEEEEEeecCC--CchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCc---c
Q psy16304 232 RARVEYGNKYEVFLYDLGG--SEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPL---V 306 (537)
Q Consensus 232 ~~~i~i~g~~~i~~~D~~G--~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~---~ 306 (537)
+|.++| ..+..... + .... ++.+++|||++.+++.++. .+++...+.. ..... .
T Consensus 59 --~I~i~g-~~~~~~~~-~~~~~~~----~r~ig~v~Q~~~l~~~ltv------------~eni~~~~~~-~~~~~~~~~ 117 (372)
T 1g29_1 59 --QIYIGD-KLVADPEK-GIFVPPK----DRDIAMVFQSYALYPHMTV------------YDNIAFPLKL-RKVPRQEID 117 (372)
T ss_dssp --EEEETT-EEEEEGGG-TEECCGG----GSSEEEECSCCCCCTTSCH------------HHHHHHHHHH-TTCCHHHHH
T ss_pred --EEEECC-EECccccc-cccCCHh----HCCEEEEeCCCccCCCCCH------------HHHHHHHHHH-cCCCHHHHH
Confidence 999997 55532100 0 0111 2569999999888776554 1111110100 01110 1
Q ss_pred ccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcC
Q psy16304 307 DFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTV 379 (537)
Q Consensus 307 ~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~ 379 (537)
.+....+..+|+.+.. .+.+.+|||||+||+ ++|++++. + |++++|| |++++.. ...++.+.++.
T Consensus 118 ~~v~~~l~~~~L~~~~-~r~~~~LSGGq~QRv----alArAL~~-~--P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~ 189 (372)
T 1g29_1 118 QRVREVAELLGLTELL-NRKPRELSGGQRQRV----ALGRAIVR-K--PQVFLMDEPLSNLDAKLRVRMRAELKKLQRQL 189 (372)
T ss_dssp HHHHHHHHHHTCGGGT-TCCGGGSCHHHHHHH----HHHHHHHT-C--CSEEEEECTTTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCchHh-cCCcccCCHHHHHHH----HHHHHHhc-C--CCEEEECCCCccCCHHHHHHHHHHHHHHHHhc
Confidence 1223445567887665 455999999999999 99999996 5 8999999 9999322 22334444443
Q ss_pred CEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchh
Q psy16304 380 SQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLS 417 (537)
Q Consensus 380 ~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~ 417 (537)
+.+++++ +||..++...+ +++|++|+++..|++.++.
T Consensus 190 g~tvi~v-THd~~~a~~~adri~vl~~G~i~~~g~~~~l~ 228 (372)
T 1g29_1 190 GVTTIYV-THDQVEAMTMGDRIAVMNRGVLQQVGSPDEVY 228 (372)
T ss_dssp TCEEEEE-ESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred CCEEEEE-CCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHH
Confidence 4566666 79988776543 8999999999999888774
No 20
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.87 E-value=1.9e-24 Score=220.53 Aligned_cols=247 Identities=13% Similarity=0.113 Sum_probs=150.1
Q ss_pred ccccccccccccCccccccccCCCCCCc--hhHHHHHHHHHHHHhhhcccccCCCcccCCCCCCCCCcchhhcccccccc
Q psy16304 108 NIACKDMNMQNVPNFQTSSVLSDDPAPT--FEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLL 185 (537)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (537)
.++.+..++++++++++.+....++..+ ... ....+.++++.+.|+... .+
T Consensus 17 ~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~----------~~~~i~~~~vs~~y~~~~-----------------~v 69 (306)
T 3nh6_A 17 RGSHMFIDMENMFDLLKEETEVKDLPGAGPLRF----------QKGRIEFENVHFSYADGR-----------------ET 69 (306)
T ss_dssp --CCTTCCHHHHHHHHHHHHSCCCCTTCBCCCC----------SSCCEEEEEEEEESSTTC-----------------EE
T ss_pred hHHHHHHHHHHHHHHHhCCccccccccccccCC----------CCCeEEEEEEEEEcCCCC-----------------ce
Confidence 4566677777777777655443322111 110 012456677777664211 12
Q ss_pred cccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcc
Q psy16304 186 PTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTV 265 (537)
Q Consensus 186 ~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v 265 (537)
..+++|.+.+|++++||||||||||||+++|+|. +.|+.| +|.++| .++..++. ..++..+++|
T Consensus 70 L~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl----~~p~~G----~I~i~G-~~i~~~~~-------~~~r~~i~~v 133 (306)
T 3nh6_A 70 LQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRF----YDISSG----CIRIDG-QDISQVTQ-------ASLRSHIGVV 133 (306)
T ss_dssp EEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTS----SCCSEE----EEEETT-EETTSBCH-------HHHHHTEEEE
T ss_pred eeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcC----CCCCCc----EEEECC-EEcccCCH-------HHHhcceEEE
Confidence 3356788889999999999999999999999999 999999 999987 44322221 2344789999
Q ss_pred ccCCCCCCC-ccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEE--eccCccCccchhhhhcCCCceeeecc
Q psy16304 266 SQTPLGRPD-SRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILV--LGLDNAGKSSIIKRILGEPIISLVPT 341 (537)
Q Consensus 266 ~Q~~~l~~~-~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~l--lGl~~~gKs~li~~LSgG~rqrvs~t 341 (537)
+|++.++.. ..+++.+... ...+. +.+.+... .+ ...+.. -|+...- .....+|||||+||+
T Consensus 134 ~Q~~~lf~~Tv~eNi~~~~~~~~~~~---~~~~~~~~-~l------~~~i~~lp~gl~t~~-~~~g~~LSGGqrQRv--- 199 (306)
T 3nh6_A 134 PQDTVLFNDTIADNIRYGRVTAGNDE---VEAAAQAA-GI------HDAIMAFPEGYRTQV-GERGLKLSGGEKQRV--- 199 (306)
T ss_dssp CSSCCCCSEEHHHHHHTTSTTCCHHH---HHHHHHHH-TC------HHHHHHSTTGGGCEE-STTSBCCCHHHHHHH---
T ss_pred ecCCccCcccHHHHHHhhcccCCHHH---HHHHHHHh-Cc------HHHHHhccchhhhHh-cCCcCCCCHHHHHHH---
Confidence 999887642 1111100000 00000 00000000 00 000000 0111111 112457999999999
Q ss_pred cccccceeccCCceEEEEEe--cCchhhH--HHHH---HHHHhcCCEEEEEEeCCCcchhhhhh-hhhhcCCcEEEEecc
Q psy16304 342 VGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIW---KQYLGTVSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLISA 413 (537)
Q Consensus 342 i~la~all~~~e~p~lllLD--T~Gl~~~--~~l~---~~~~~~~~~vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g~n 413 (537)
++|++++. + |++++|| |++++.. ..++ ..+.+ +.+++++ +|+......++ +++|++|+++..|++
T Consensus 200 -aiARAL~~-~--p~iLlLDEPts~LD~~~~~~i~~~l~~l~~--~~Tvi~i-tH~l~~~~~aD~i~vl~~G~iv~~G~~ 272 (306)
T 3nh6_A 200 -AIARTILK-A--PGIILLDEATSALDTSNERAIQASLAKVCA--NRTTIVV-AHRLSTVVNADQILVIKDGCIVERGRH 272 (306)
T ss_dssp -HHHHHHHH-C--CSEEEEECCSSCCCHHHHHHHHHHHHHHHT--TSEEEEE-CCSHHHHHTCSEEEEEETTEEEEEECH
T ss_pred -HHHHHHHh-C--CCEEEEECCcccCCHHHHHHHHHHHHHHcC--CCEEEEE-EcChHHHHcCCEEEEEECCEEEEECCH
Confidence 99999997 5 8999999 9999332 2222 33322 3566777 89998887755 999999999999999
Q ss_pred cchhh
Q psy16304 414 KNLSN 418 (537)
Q Consensus 414 kdl~~ 418 (537)
.++..
T Consensus 273 ~el~~ 277 (306)
T 3nh6_A 273 EALLS 277 (306)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88753
No 21
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.86 E-value=2.4e-23 Score=230.43 Aligned_cols=265 Identities=15% Similarity=0.060 Sum_probs=169.4
Q ss_pred hhhhhHHHHHhhhcccccccccccccccCccccccccCCCCCCchhHHHHHHHHHHHHhhhcccccCCCcccCCCCCCCC
Q psy16304 92 YKAEIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAPTFEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDDP 171 (537)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~~~~ 171 (537)
...-..|+..++..++.++.+..+++++.++++.+...+++..+... ....+.++++.+.|++.. .+
T Consensus 291 ~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~----------~~~~i~~~~v~~~y~~~~---~~ 357 (582)
T 3b5x_A 291 MFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDNGKYEAER----------VNGEVDVKDVTFTYQGKE---KP 357 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCCCCCCC----------CCCeEEEEEEEEEcCCCC---cc
Confidence 34567899999999999999999999999998865443221111110 023467888888876421 00
Q ss_pred CcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCC
Q psy16304 172 APTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGS 251 (537)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~ 251 (537)
+-.++++.+++|++++|+||||||||||+++|+|. +.|++| +|.++| .++..++.
T Consensus 358 -------------~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~----~~p~~G----~i~~~g-~~~~~~~~--- 412 (582)
T 3b5x_A 358 -------------ALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRF----YDVDSG----SICLDG-HDVRDYKL--- 412 (582)
T ss_pred -------------ccccceEEECCCCEEEEECCCCCCHHHHHHHHhcC----CCCCCC----EEEECC-EEhhhCCH---
Confidence 12345677889999999999999999999999999 999999 999987 55432221
Q ss_pred chhhHHHHhhhhccccCCCCCCC-ccceeeEEe--ecCcccccCCcccccccCcCCccccCCccEEE--eccCccCccch
Q psy16304 252 EDFRTIWKQYLGTVSQTPLGRPD-SRTCQVYLI--MCGVHQVSGIPDELTSATHLPLVDFRSVPILV--LGLDNAGKSSI 326 (537)
Q Consensus 252 ~~~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~--Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~l--lGl~~~gKs~l 326 (537)
..+++.+++|+|++.++.. ..+++.+.. +.+.++ +.+.++.. ++. ..+.. -|+...- ...
T Consensus 413 ----~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~---~~~~~~~~-~l~------~~~~~~p~g~~t~~-~~~ 477 (582)
T 3b5x_A 413 ----TNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQ---IEQAARQA-HAM------EFIENMPQGLDTVI-GEN 477 (582)
T ss_pred ----HHHhcCeEEEcCCCccccccHHHHHhccCCCCCCHHH---HHHHHHHC-CCH------HHHHhCcccccchh-cCC
Confidence 2234789999999887643 111111110 000000 00000000 000 00000 0111111 112
Q ss_pred hhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH--HHHHHHHhc-CCEEEEEEeCCCcchhhhhh-hh
Q psy16304 327 IKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR--TIWKQYLGT-VSQTLLVSHSLSGRPDDRCQ-VY 400 (537)
Q Consensus 327 i~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~--~l~~~~~~~-~~~vIlVvdshd~~~~~~~~-i~ 400 (537)
..+|||||+||+ ++|++++. + |++++|| |++++... .+++.+.+. .+.+++++ +|+......++ ++
T Consensus 478 ~~~LSgGq~qr~----~iAral~~-~--p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~i-tH~~~~~~~~d~i~ 549 (582)
T 3b5x_A 478 GTSLSGGQRQRV----AIARALLR-D--APVLILDEATSALDTESERAIQAALDELQKNKTVLVI-AHRLSTIEQADEIL 549 (582)
T ss_pred CCcCCHHHHHHH----HHHHHHHc-C--CCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEE-ecCHHHHHhCCEEE
Confidence 467999999999 99999996 5 8999999 99994333 233333221 24466666 78887776555 89
Q ss_pred hhcCCcEEEEecccchh
Q psy16304 401 LMSCNCQVYLISAKNLS 417 (537)
Q Consensus 401 ll~~G~ii~~g~nkdl~ 417 (537)
++++|+++..|+++++.
T Consensus 550 ~l~~G~i~~~g~~~~l~ 566 (582)
T 3b5x_A 550 VVDEGEIIERGRHADLL 566 (582)
T ss_pred EEECCEEEEECCHHHHH
Confidence 99999999998888774
No 22
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.86 E-value=5.5e-23 Score=206.55 Aligned_cols=213 Identities=16% Similarity=0.143 Sum_probs=137.1
Q ss_pred hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304 152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN 231 (537)
Q Consensus 152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t 231 (537)
++.++++.+.|+... + ..+..+++|.+.+|++++|+||||||||||+++|+|. +.|++|
T Consensus 16 ~l~~~~l~~~y~~~~---~------------~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl----~~p~~G-- 74 (271)
T 2ixe_A 16 LVKFQDVSFAYPNHP---N------------VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNL----YQPTGG-- 74 (271)
T ss_dssp CEEEEEEEECCTTCT---T------------SCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS----SCCSEE--
T ss_pred eEEEEEEEEEeCCCC---C------------ceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcC----CCCCCC--
Confidence 467888888876410 0 0112345677889999999999999999999999999 999999
Q ss_pred eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCc---CC---c
Q psy16304 232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATH---LP---L 305 (537)
Q Consensus 232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~---l~---~ 305 (537)
+|.++| .++..++ ...++..+++++|++.++.. +. .+ ++......... .. .
T Consensus 75 --~I~~~g-~~i~~~~-------~~~~~~~i~~v~Q~~~l~~~-tv-----~e-------nl~~~~~~~~~~~~~~~~~~ 131 (271)
T 2ixe_A 75 --KVLLDG-EPLVQYD-------HHYLHTQVAAVGQEPLLFGR-SF-----RE-------NIAYGLTRTPTMEEITAVAM 131 (271)
T ss_dssp --EEEETT-EEGGGBC-------HHHHHHHEEEECSSCCCCSS-BH-----HH-------HHHTTCSSCCCHHHHHHHHH
T ss_pred --EEEECC-EEcccCC-------HHHHhccEEEEecCCccccc-cH-----HH-------HHhhhcccCChHHHHHHHHH
Confidence 999987 4331111 11234679999999876542 11 11 00000000000 00 0
Q ss_pred cccCCccEEEe--ccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH--HHHHHHHHh--
Q psy16304 306 VDFRSVPILVL--GLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIWKQYLG-- 377 (537)
Q Consensus 306 ~~~~~~~L~ll--Gl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l~~~~~~-- 377 (537)
.......+..+ |+.... ...+.+|||||+||+ ++|++++. + |++++|| |+|++.. ..+++.+.+
T Consensus 132 ~~~~~~~l~~l~~gl~~~~-~~~~~~LSgGq~QRv----~lAraL~~-~--p~lllLDEPts~LD~~~~~~i~~~l~~~~ 203 (271)
T 2ixe_A 132 ESGAHDFISGFPQGYDTEV-GETGNQLSGGQRQAV----ALARALIR-K--PRLLILDNATSALDAGNQLRVQRLLYESP 203 (271)
T ss_dssp HHTCHHHHHHSTTGGGSBC-CGGGTTSCHHHHHHH----HHHHHHTT-C--CSEEEEESTTTTCCHHHHHHHHHHHHHCT
T ss_pred HHhHHHHHHhhhcchhhhh-cCCcCCCCHHHHHHH----HHHHHHhc-C--CCEEEEECCccCCCHHHHHHHHHHHHHHH
Confidence 00011112223 454433 344889999999999 99999996 5 8999999 9999433 333343333
Q ss_pred -cCCEEEEEEeCCCcchhhhhh-hhhhcCCcEEEEecccchh
Q psy16304 378 -TVSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLISAKNLS 417 (537)
Q Consensus 378 -~~~~vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g~nkdl~ 417 (537)
+.+.+++++ +||......++ ++++++|+++..+...++.
T Consensus 204 ~~~g~tviiv-tHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~ 244 (271)
T 2ixe_A 204 EWASRTVLLI-TQQLSLAERAHHILFLKEGSVCEQGTHLQLM 244 (271)
T ss_dssp TTTTSEEEEE-CSCHHHHTTCSEEEEEETTEEEEEECHHHHH
T ss_pred hhcCCEEEEE-eCCHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 224567777 89988766544 8999999999888877663
No 23
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.85 E-value=3.1e-23 Score=204.77 Aligned_cols=190 Identities=18% Similarity=0.072 Sum_probs=127.7
Q ss_pred cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304 188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ 267 (537)
Q Consensus 188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q 267 (537)
.+++.+.+ ++++|+||||||||||+++|+|. ..|++| +|.++| .++. ..... ++.+++++|
T Consensus 17 ~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl----~~p~~G----~i~~~g-~~~~-----~~~~~----~~~i~~v~q 77 (240)
T 2onk_A 17 NVDFEMGR-DYCVLLGPTGAGKSVFLELIAGI----VKPDRG----EVRLNG-ADIT-----PLPPE----RRGIGFVPQ 77 (240)
T ss_dssp EEEEEECS-SEEEEECCTTSSHHHHHHHHHTS----SCCSEE----EEEETT-EECT-----TSCTT----TSCCBCCCS
T ss_pred eeEEEECC-EEEEEECCCCCCHHHHHHHHhCC----CCCCce----EEEECC-EECC-----cCchh----hCcEEEEcC
Confidence 35677889 99999999999999999999999 999999 999987 4331 11112 256999999
Q ss_pred CCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccc
Q psy16304 268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA 347 (537)
Q Consensus 268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~a 347 (537)
++.+++..+.. +++.........-....+....+..+|+.+.. ...+.+|||||+||+ ++|++
T Consensus 78 ~~~l~~~ltv~------------enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgGqkqRv----~lAra 140 (240)
T 2onk_A 78 DYALFPHLSVY------------RNIAYGLRNVERVERDRRVREMAEKLGIAHLL-DRKPARLSGGERQRV----ALARA 140 (240)
T ss_dssp SCCCCTTSCHH------------HHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTT-TCCGGGSCHHHHHHH----HHHHH
T ss_pred CCccCCCCcHH------------HHHHHHHHHcCCchHHHHHHHHHHHcCCHHHh-cCChhhCCHHHHHHH----HHHHH
Confidence 98766543320 00100000000000011122334467776554 455899999999999 99999
Q ss_pred eeccCCceEEEEEe--cCchhhH--HH---HHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccchh
Q psy16304 348 RVEYGNKYEVFLYD--LGGSEDF--RT---IWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNLS 417 (537)
Q Consensus 348 ll~~~e~p~lllLD--T~Gl~~~--~~---l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl~ 417 (537)
++. + |++++|| |+|++.. .. .+..+.++.+.+++++ +||.......+ ++++++|+++..+.+.++.
T Consensus 141 l~~-~--p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~v-tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 215 (240)
T 2onk_A 141 LVI-Q--PRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHV-THDLIEAAMLADEVAVMLNGRIVEKGKLKELF 215 (240)
T ss_dssp HTT-C--CSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEE-ESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHc-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 996 5 8999999 9999332 22 2334433324556666 78887765433 8999999999888877763
No 24
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.85 E-value=2.4e-23 Score=230.45 Aligned_cols=266 Identities=15% Similarity=0.033 Sum_probs=169.0
Q ss_pred hhhhhHHHHHhhhcccccccccccccccCccccccccCCCCCCchhHHHHHHHHHHHHhhhcccccCCCcccCCCCCCCC
Q psy16304 92 YKAEIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAPTFEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDDP 171 (537)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~~~~ 171 (537)
...-.+|+..++..++.++.+..+++++.++++.+...+++..+... ....+.++++.+.|++.. .+
T Consensus 291 ~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~----------~~~~i~~~~v~~~y~~~~---~~ 357 (582)
T 3b60_A 291 MIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDEGKRVIDR----------ATGDLEFRNVTFTYPGRE---VP 357 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCCCCCBCCSC----------CCCCEEEEEEEECSSSSS---CC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCCCCCCCC----------CCCcEEEEEEEEEcCCCC---Cc
Confidence 34567899999999999999999999999998865443221111110 023467888888775320 01
Q ss_pred CcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCC
Q psy16304 172 APTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGS 251 (537)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~ 251 (537)
+-.++++.+++|++++|+||||||||||+++|+|. +.|++| +|.++| .++..++
T Consensus 358 -------------~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~----~~p~~G----~i~~~g-~~~~~~~---- 411 (582)
T 3b60_A 358 -------------ALRNINLKIPAGKTVALVGRSGSGKSTIASLITRF----YDIDEG----HILMDG-HDLREYT---- 411 (582)
T ss_dssp -------------SEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTT----TCCSEE----EEEETT-EETTTBC----
T ss_pred -------------cccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhc----cCCCCC----eEEECC-EEccccC----
Confidence 12345677889999999999999999999999999 999999 999987 4332111
Q ss_pred chhhHHHHhhhhccccCCCCCCC-ccceeeEEe--ecCcccccCCcccccccCcCCccccCCccEEEe--ccCccCccch
Q psy16304 252 EDFRTIWKQYLGTVSQTPLGRPD-SRTCQVYLI--MCGVHQVSGIPDELTSATHLPLVDFRSVPILVL--GLDNAGKSSI 326 (537)
Q Consensus 252 ~~~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~--Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~ll--Gl~~~gKs~l 326 (537)
...+++.+++|+|++.++.. ..+.+.+.. +.+.++ +.+.++.. ++. ..+..+ |+...- ...
T Consensus 412 ---~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~---~~~~l~~~-~l~------~~~~~~p~g~~~~~-~~~ 477 (582)
T 3b60_A 412 ---LASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQ---IEEAARMA-YAM------DFINKMDNGLDTII-GEN 477 (582)
T ss_dssp ---HHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHH---HHHHHHTT-TCH------HHHHHSTTGGGSBC-CTT
T ss_pred ---HHHHHhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHH---HHHHHHHc-CCH------HHHHhccccccccc-cCC
Confidence 12344789999999987653 111111000 000000 00000000 000 000000 111111 112
Q ss_pred hhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH--HHHHHHHh-cCCEEEEEEeCCCcchhhhhh-hh
Q psy16304 327 IKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR--TIWKQYLG-TVSQTLLVSHSLSGRPDDRCQ-VY 400 (537)
Q Consensus 327 i~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~--~l~~~~~~-~~~~vIlVvdshd~~~~~~~~-i~ 400 (537)
..+|||||+||+ ++|++++. + |++++|| |++++... .+++.+.+ ..+.+++++ +|+......++ ++
T Consensus 478 ~~~LSgGq~qrl----~iAral~~-~--p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~i-tH~~~~~~~~d~i~ 549 (582)
T 3b60_A 478 GVLLSGGQRQRI----AIARALLR-D--SPILILDEATSALDTESERAIQAALDELQKNRTSLVI-AHRLSTIEQADEIV 549 (582)
T ss_dssp SCSSCHHHHHHH----HHHHHHHH-C--CSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEE-CSCGGGTTTCSEEE
T ss_pred CCCCCHHHHHHH----HHHHHHHh-C--CCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEE-eccHHHHHhCCEEE
Confidence 467999999999 99999997 5 8999999 99994332 23332222 124567777 88888776655 89
Q ss_pred hhcCCcEEEEecccchhh
Q psy16304 401 LMSCNCQVYLISAKNLSN 418 (537)
Q Consensus 401 ll~~G~ii~~g~nkdl~~ 418 (537)
++++|+++..|+++++.+
T Consensus 550 ~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b60_A 550 VVEDGIIVERGTHSELLA 567 (582)
T ss_dssp EEETTEEEEEECHHHHHH
T ss_pred EEECCEEEEecCHHHHHH
Confidence 999999999998887743
No 25
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.85 E-value=3.4e-23 Score=205.33 Aligned_cols=187 Identities=15% Similarity=0.105 Sum_probs=122.2
Q ss_pred ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304 187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS 266 (537)
Q Consensus 187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~ 266 (537)
..++|.+.+|++++|+||||||||||+++|+|. +.|++| +|.++| .++ .... . ..++..+++++
T Consensus 26 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~p~~G----~I~i~g-~~~-----~~~~-~-~~~~~~i~~v~ 89 (247)
T 2ff7_A 26 DNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRF----YIPENG----QVLIDG-HDL-----ALAD-P-NWLRRQVGVVL 89 (247)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHTTS----SCCSEE----EEEETT-EET-----TTSC-H-HHHHHHEEEEC
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC----CCCCCc----EEEECC-EEh-----hhCC-H-HHHHhcEEEEe
Confidence 345677889999999999999999999999999 999999 999987 432 1111 1 12346799999
Q ss_pred cCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEec-----------cCccCccchhhhhcCCCc
Q psy16304 267 QTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLG-----------LDNAGKSSIIKRILGEPI 335 (537)
Q Consensus 267 Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llG-----------l~~~gKs~li~~LSgG~r 335 (537)
|++.++.. +. .+ .+..........+....+..+| +.... ...+.+|||||+
T Consensus 90 Q~~~l~~~-tv-----~e-----------nl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~-~~~~~~LSgGq~ 151 (247)
T 2ff7_A 90 QDNVLLNR-SI-----ID-----------NISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIV-GEQGAGLSGGQR 151 (247)
T ss_dssp SSCCCTTS-BH-----HH-----------HHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBC-STTTTCCCHHHH
T ss_pred CCCccccc-cH-----HH-----------HHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhh-hCCCCCCCHHHH
Confidence 99876532 11 11 0000000000000000111122 22211 223678999999
Q ss_pred eeeecccccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhhh-hhhhcCCcE
Q psy16304 336 ISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQ 407 (537)
Q Consensus 336 qrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~~-i~ll~~G~i 407 (537)
||+ ++|++++. + |++++|| |++++.. ...+..+ +. +.+++++ +|+......++ ++++++|++
T Consensus 152 qRv----~iAraL~~-~--p~lllLDEPts~LD~~~~~~i~~~l~~~-~~-g~tviiv-tH~~~~~~~~d~v~~l~~G~i 221 (247)
T 2ff7_A 152 QRI----AIARALVN-N--PKILIFDEATSALDYESEHVIMRNMHKI-CK-GRTVIII-AHRLSTVKNADRIIVMEKGKI 221 (247)
T ss_dssp HHH----HHHHHHTT-C--CSEEEECCCCSCCCHHHHHHHHHHHHHH-HT-TSEEEEE-CSSGGGGTTSSEEEEEETTEE
T ss_pred HHH----HHHHHHhc-C--CCEEEEeCCcccCCHHHHHHHHHHHHHH-cC-CCEEEEE-eCCHHHHHhCCEEEEEECCEE
Confidence 999 99999996 5 8999999 9999322 2233343 23 4566777 88887766544 899999999
Q ss_pred EEEecccchh
Q psy16304 408 VYLISAKNLS 417 (537)
Q Consensus 408 i~~g~nkdl~ 417 (537)
+..+.+.++.
T Consensus 222 ~~~g~~~~l~ 231 (247)
T 2ff7_A 222 VEQGKHKELL 231 (247)
T ss_dssp EEEECHHHHH
T ss_pred EEECCHHHHH
Confidence 9888877663
No 26
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.85 E-value=4.3e-23 Score=229.07 Aligned_cols=264 Identities=10% Similarity=0.040 Sum_probs=169.6
Q ss_pred hhhhHHHHHhhhcccccccccccccccCccccccccCCCCCC-chhHHHHHHHHHHHHhhhcccccCCCcccCCCCCCCC
Q psy16304 93 KAEIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAP-TFEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDDP 171 (537)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~~~~ 171 (537)
..-.+|+..+...++.++.+..+++|+.++++.+...+.+.+ +... ....+.++++++.|+...
T Consensus 304 ~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~----------~~~~i~~~~v~~~y~~~~----- 368 (598)
T 3qf4_B 304 RQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKDDPDAVELRE----------VRGEIEFKNVWFSYDKKK----- 368 (598)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCSSCCCCCS----------CCCCEEEEEEECCSSSSS-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCC----------CCCeEEEEEEEEECCCCC-----
Confidence 345689999999999999999999999999886554322211 1100 012456788888775321
Q ss_pred CcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCC
Q psy16304 172 APTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGS 251 (537)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~ 251 (537)
.+-.++++.+++|++++|+||||||||||+++|+|. +.|++| +|.++| .++..++.
T Consensus 369 ------------~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~----~~p~~G----~i~~~g-~~i~~~~~--- 424 (598)
T 3qf4_B 369 ------------PVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRF----YDVDRG----QILVDG-IDIRKIKR--- 424 (598)
T ss_dssp ------------CSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTS----SCCSEE----EEEETT-EEGGGSCH---
T ss_pred ------------ccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcC----cCCCCe----EEEECC-EEhhhCCH---
Confidence 012345678889999999999999999999999999 999999 999987 44422221
Q ss_pred chhhHHHHhhhhccccCCCCCCC-ccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEE--eccCccCccchh
Q psy16304 252 EDFRTIWKQYLGTVSQTPLGRPD-SRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILV--LGLDNAGKSSII 327 (537)
Q Consensus 252 ~~~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~l--lGl~~~gKs~li 327 (537)
..+++.+++++|++.++.. ..+++.+... .+.++ +.+.+.... .. ..+.. -|+...- ....
T Consensus 425 ----~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~---~~~~~~~~~-~~------~~~~~~~~g~~t~~-~~~g 489 (598)
T 3qf4_B 425 ----SSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEE---IKEAAKLTH-SD------HFIKHLPEGYETVL-TDNG 489 (598)
T ss_dssp ----HHHHHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTH---HHHHTTTTT-CH------HHHHTSTTGGGCBC-HHHH
T ss_pred ----HHHHhceEEEeCCCccccccHHHHHhcCCCCCCHHH---HHHHHHHhC-CH------HHHHhccccccchh-cCCC
Confidence 2345789999999987753 1111111000 00000 000000000 00 00000 0111111 1224
Q ss_pred hhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH--HHHHHHHh-cCCEEEEEEeCCCcchhhhhh-hhh
Q psy16304 328 KRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR--TIWKQYLG-TVSQTLLVSHSLSGRPDDRCQ-VYL 401 (537)
Q Consensus 328 ~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~--~l~~~~~~-~~~~vIlVvdshd~~~~~~~~-i~l 401 (537)
.+|||||+||+ ++|++++. + |++++|| |++++... .+.+.+.+ ..+.+++++ +|+......++ +++
T Consensus 490 ~~LSgGq~Qrv----~iAral~~-~--p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~i-tH~l~~~~~~d~i~~ 561 (598)
T 3qf4_B 490 EDLSQGQRQLL----AITRAFLA-N--PKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIII-AHRLNTIKNADLIIV 561 (598)
T ss_dssp TTSCHHHHHHH----HHHHHHHT-C--CSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEE-SCCTTHHHHCSEEEE
T ss_pred CCCCHHHHHHH----HHHHHHhc-C--CCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEE-ecCHHHHHcCCEEEE
Confidence 67999999999 99999996 5 8999999 99994332 22222221 124567777 89988887766 999
Q ss_pred hcCCcEEEEecccchhh
Q psy16304 402 MSCNCQVYLISAKNLSN 418 (537)
Q Consensus 402 l~~G~ii~~g~nkdl~~ 418 (537)
+++|+++..|+++++.+
T Consensus 562 l~~G~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 562 LRDGEIVEMGKHDELIQ 578 (598)
T ss_dssp ECSSSEEECSCHHHHHH
T ss_pred EECCEEEEECCHHHHHh
Confidence 99999999999988753
No 27
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.85 E-value=1.1e-23 Score=212.50 Aligned_cols=212 Identities=14% Similarity=0.106 Sum_probs=136.0
Q ss_pred hhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceee
Q psy16304 151 ILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF 230 (537)
Q Consensus 151 ~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~ 230 (537)
.++.++++.+.|+...+ -.+++|.+.+|++++|+||||||||||+++|+|. +.|++|
T Consensus 20 ~~l~~~~l~~~y~~~~v------------------L~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl----~~p~~G- 76 (279)
T 2ihy_A 20 MLIQLDQIGRMKQGKTI------------------LKKISWQIAKGDKWILYGLNGAGKTTLLNILNAY----EPATSG- 76 (279)
T ss_dssp EEEEEEEEEEEETTEEE------------------EEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTS----SCCSEE-
T ss_pred ceEEEEeEEEEECCEEE------------------EEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCC----CCCCCe-
Confidence 45788899888754221 2345677889999999999999999999999999 999999
Q ss_pred eeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCc--cceeeEEeecCcccccCCcccc----cccCcCC
Q psy16304 231 NRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDS--RTCQVYLIMCGVHQVSGIPDEL----TSATHLP 304 (537)
Q Consensus 231 t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~--~~~il~v~Ds~~~~~~~l~~~l----~~~~~l~ 304 (537)
+|.++| .++.. .... . ..+++.+++++|++.++... +. .+ ++.... .......
T Consensus 77 ---~I~~~g-~~~~~---~~~~-~-~~~~~~i~~v~Q~~~~~~~~~ltv-----~e-------nl~~~~~~~~~~~~~~~ 135 (279)
T 2ihy_A 77 ---TVNLFG-KMPGK---VGYS-A-ETVRQHIGFVSHSLLEKFQEGERV-----ID-------VVISGAFKSIGVYQDID 135 (279)
T ss_dssp ---EEEETT-BCCC------CC-H-HHHHTTEEEECHHHHTTSCTTSBH-----HH-------HHHTTC---------CC
T ss_pred ---EEEECC-EEccc---ccCC-H-HHHcCcEEEEEcCcccccCCCCCH-----HH-------HHHhhhhhccccccCCc
Confidence 999987 32210 0111 1 12346799999986532111 11 00 000000 0000000
Q ss_pred c--cccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-----HHHHHHH
Q psy16304 305 L--VDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQY 375 (537)
Q Consensus 305 ~--~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~ 375 (537)
. ..+....+..+|+.... ...+.+|||||+||+ ++|++++. + |++++|| |+|++.. ..++..+
T Consensus 136 ~~~~~~~~~~l~~~gl~~~~-~~~~~~LSgGqkqRv----~lAraL~~-~--p~lLlLDEPts~LD~~~~~~l~~~l~~l 207 (279)
T 2ihy_A 136 DEIRNEAHQLLKLVGMSAKA-QQYIGYLSTGEKQRV----MIARALMG-Q--PQVLILDEPAAGLDFIARESLLSILDSL 207 (279)
T ss_dssp HHHHHHHHHHHHHTTCGGGT-TSBGGGSCHHHHHHH----HHHHHHHT-C--CSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChhHh-cCChhhCCHHHHHHH----HHHHHHhC-C--CCEEEEeCCccccCHHHHHHHHHHHHHH
Confidence 0 01122334467776554 445899999999999 99999996 5 8999999 9999322 2233444
Q ss_pred HhcCCEEE--EEEeCCCcchhhhhh--hhhhcCCcEEEEecccch
Q psy16304 376 LGTVSQTL--LVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 376 ~~~~~~vI--lVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl 416 (537)
.++ +.++ +++ +||.......+ ++++++|+++..+...++
T Consensus 208 ~~~-g~tv~~iiv-tHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 250 (279)
T 2ihy_A 208 SDS-YPTLAMIYV-THFIEEITANFSKILLLKDGQSIQQGAVEDI 250 (279)
T ss_dssp HHH-CTTCEEEEE-ESCGGGCCTTCCEEEEEETTEEEEEEEHHHH
T ss_pred HHC-CCEEEEEEE-ecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 344 3344 556 78888765433 899999999988877665
No 28
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.85 E-value=1.6e-22 Score=202.52 Aligned_cols=190 Identities=17% Similarity=0.166 Sum_probs=127.9
Q ss_pred ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304 187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS 266 (537)
Q Consensus 187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~ 266 (537)
.++++.+.+|++++|+||||||||||+++|+|. ..|++| +|.++| ..+. .. .++..+++++
T Consensus 24 ~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl----~~p~~G----~I~~~g-~~~~--------~~--~~~~~i~~v~ 84 (266)
T 2yz2_A 24 ENVSLVINEGECLLVAGNTGSGKSTLLQIVAGL----IEPTSG----DVLYDG-ERKK--------GY--EIRRNIGIAF 84 (266)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS----SCCSEE----EEEETT-EECC--------HH--HHGGGEEEEC
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC----CCCCCc----EEEECC-EECc--------hH--HhhhhEEEEe
Confidence 346678889999999999999999999999999 999999 999987 4321 11 2336799999
Q ss_pred cCC-CCCCCccceeeEEeecCcccccCCcccccc-cCcCCccccCCccEEEeccC--ccCccchhhhhcCCCceeeeccc
Q psy16304 267 QTP-LGRPDSRTCQVYLIMCGVHQVSGIPDELTS-ATHLPLVDFRSVPILVLGLD--NAGKSSIIKRILGEPIISLVPTV 342 (537)
Q Consensus 267 Q~~-~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~-~~~l~~~~~~~~~L~llGl~--~~gKs~li~~LSgG~rqrvs~ti 342 (537)
|++ ..+...+. .+ ++...... ...-....+....+..+|+. +.. ...+.+|||||+||+
T Consensus 85 q~~~~~~~~~tv-----~e-------nl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~~~LSgGq~qRv---- 147 (266)
T 2yz2_A 85 QYPEDQFFAERV-----FD-------EVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFK-DRVPFFLSGGEKRRV---- 147 (266)
T ss_dssp SSGGGGCCCSSH-----HH-------HHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHT-TCCGGGSCHHHHHHH----
T ss_pred ccchhhcCCCcH-----HH-------HHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccc-cCChhhCCHHHHHHH----
Confidence 985 22222221 00 00000000 00000011122344567776 544 455899999999999
Q ss_pred ccccceeccCCceEEEEEe--cCchhhH--H---HHHHHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEEEecc
Q psy16304 343 GFNRARVEYGNKYEVFLYD--LGGSEDF--R---TIWKQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVYLISA 413 (537)
Q Consensus 343 ~la~all~~~e~p~lllLD--T~Gl~~~--~---~l~~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~~g~n 413 (537)
++|++++. + |++++|| |+|++.. . ..+..+.++ +.+++++ +||....... + ++++++|+++..+..
T Consensus 148 ~lAraL~~-~--p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tii~v-tHd~~~~~~~~d~v~~l~~G~i~~~g~~ 222 (266)
T 2yz2_A 148 AIASVIVH-E--PDILILDEPLVGLDREGKTDLLRIVEKWKTL-GKTVILI-SHDIETVINHVDRVVVLEKGKKVFDGTR 222 (266)
T ss_dssp HHHHHHTT-C--CSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEE-CSCCTTTGGGCSEEEEEETTEEEEEEEH
T ss_pred HHHHHHHc-C--CCEEEEcCccccCCHHHHHHHHHHHHHHHHc-CCEEEEE-eCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999996 5 8999999 9999322 2 233444334 5567777 8998877653 3 889999999888877
Q ss_pred cchh
Q psy16304 414 KNLS 417 (537)
Q Consensus 414 kdl~ 417 (537)
.++.
T Consensus 223 ~~~~ 226 (266)
T 2yz2_A 223 MEFL 226 (266)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7663
No 29
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.84 E-value=5.6e-23 Score=227.34 Aligned_cols=268 Identities=12% Similarity=0.054 Sum_probs=171.5
Q ss_pred hhhhhHHHHHhhhcccccccccccccccCccccccccCCCCCCchhHHHHHHHHHHHHhhhcccccCCCcccCCCCCCCC
Q psy16304 92 YKAEIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAPTFEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDDP 171 (537)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~~~~ 171 (537)
+..-.+|+..+...++.++.+..+++|+.++++.+....++.++.+. -.....+.++++++.|+...
T Consensus 287 ~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~--------~~~~~~i~~~~v~~~y~~~~----- 353 (578)
T 4a82_A 287 LELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNGVGAQPI--------EIKQGRIDIDHVSFQYNDNE----- 353 (578)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCCCTTCCCC--------CCCSCCEEEEEEEECSCSSS-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCcccc--------CCCCCeEEEEEEEEEcCCCC-----
Confidence 44557899999999999999999999999998866544332211110 00022456778887765321
Q ss_pred CcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCC
Q psy16304 172 APTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGS 251 (537)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~ 251 (537)
..+-.++++.+++|++++|+||||||||||+++|.|. +.|++| +|.++| .++..++.
T Consensus 354 -----------~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~----~~p~~G----~i~~~g-~~~~~~~~--- 410 (578)
T 4a82_A 354 -----------APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRF----YDVTSG----QILIDG-HNIKDFLT--- 410 (578)
T ss_dssp -----------CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTS----SCCSEE----EEEETT-EEGGGSCH---
T ss_pred -----------CcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcC----CCCCCc----EEEECC-EEhhhCCH---
Confidence 0123356678889999999999999999999999999 999999 999997 44322211
Q ss_pred chhhHHHHhhhhccccCCCCCCC-ccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEE--eccCccCccchh
Q psy16304 252 EDFRTIWKQYLGTVSQTPLGRPD-SRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILV--LGLDNAGKSSII 327 (537)
Q Consensus 252 ~~~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~l--lGl~~~gKs~li 327 (537)
..+++.+++++|++.++.. ..+++.+... ...++ +.+.+.... .. ..+.. -|+...- ....
T Consensus 411 ----~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~---~~~~~~~~~-~~------~~~~~lp~g~~t~~-~~~g 475 (578)
T 4a82_A 411 ----GSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEE---VVEAAKMAN-AH------DFIMNLPQGYDTEV-GERG 475 (578)
T ss_dssp ----HHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHH---HHHHHHHTT-CH------HHHHTSTTGGGCBC-CGGG
T ss_pred ----HHHhhheEEEeCCCccCcccHHHHHhcCCCCCCHHH---HHHHHHHhC-cH------HHHHhCcchhhhhh-ccCC
Confidence 2345789999999987754 1121111000 00000 000000000 00 00000 0211111 1224
Q ss_pred hhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH--HHHHHHHh-cCCEEEEEEeCCCcchhhhhh-hhh
Q psy16304 328 KRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR--TIWKQYLG-TVSQTLLVSHSLSGRPDDRCQ-VYL 401 (537)
Q Consensus 328 ~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~--~l~~~~~~-~~~~vIlVvdshd~~~~~~~~-i~l 401 (537)
.+|||||+||+ ++|++++. + |++++|| |++++... .+++.+.+ ..+.+++++ +|+......++ +++
T Consensus 476 ~~LSgGq~Qrv----~lAral~~-~--p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~i-tH~l~~~~~~d~i~~ 547 (578)
T 4a82_A 476 VKLSGGQKQRL----SIARIFLN-N--PPILILDEATSALDLESESIIQEALDVLSKDRTTLIV-AHRLSTITHADKIVV 547 (578)
T ss_dssp TTSCHHHHHHH----HHHHHHHH-C--CSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEE-CSSGGGTTTCSEEEE
T ss_pred CcCCHHHHHHH----HHHHHHHc-C--CCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEE-ecCHHHHHcCCEEEE
Confidence 67999999999 99999997 5 8999999 99994332 22232221 123567777 89988887666 999
Q ss_pred hcCCcEEEEecccchhh
Q psy16304 402 MSCNCQVYLISAKNLSN 418 (537)
Q Consensus 402 l~~G~ii~~g~nkdl~~ 418 (537)
+++|+++..|+++++.+
T Consensus 548 l~~G~i~~~g~~~el~~ 564 (578)
T 4a82_A 548 IENGHIVETGTHRELIA 564 (578)
T ss_dssp EETTEEEEEECHHHHHH
T ss_pred EECCEEEEECCHHHHHh
Confidence 99999999999988743
No 30
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.84 E-value=5.8e-23 Score=199.33 Aligned_cols=195 Identities=9% Similarity=0.032 Sum_probs=126.8
Q ss_pred HhhhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCce
Q psy16304 149 RGILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTV 228 (537)
Q Consensus 149 ~~~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~ 228 (537)
.+.++.++++.+.|+. .+ ...+++.+.+|++++|+||||||||||+++|+|. ..|++
T Consensus 7 ~~~~l~~~~ls~~y~~-~i------------------l~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl----~~p~~ 63 (214)
T 1sgw_A 7 HGSKLEIRDLSVGYDK-PV------------------LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTY----LKPLK 63 (214)
T ss_dssp --CEEEEEEEEEESSS-EE------------------EEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTS----SCCSE
T ss_pred CCceEEEEEEEEEeCC-eE------------------EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC----CCCCC
Confidence 3677888888887754 22 1234577789999999999999999999999999 99999
Q ss_pred eeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccC-cCCccc
Q psy16304 229 GFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSAT-HLPLVD 307 (537)
Q Consensus 229 G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~-~l~~~~ 307 (537)
| +|.++| .++. . ++..+++++|++.+++..+.. +++........ ... ..
T Consensus 64 G----~I~~~g-~~~~--------~----~~~~i~~v~q~~~~~~~~tv~------------enl~~~~~~~~~~~~-~~ 113 (214)
T 1sgw_A 64 G----EIIYNG-VPIT--------K----VKGKIFFLPEEIIVPRKISVE------------DYLKAVASLYGVKVN-KN 113 (214)
T ss_dssp E----EEEETT-EEGG--------G----GGGGEEEECSSCCCCTTSBHH------------HHHHHHHHHTTCCCC-HH
T ss_pred e----EEEECC-EEhh--------h----hcCcEEEEeCCCcCCCCCCHH------------HHHHHHHHhcCCchH-HH
Confidence 9 999987 3321 1 236799999998765543320 00100000000 000 11
Q ss_pred cCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCch-----hhHHHHHHHHHhcCC
Q psy16304 308 FRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGS-----EDFRTIWKQYLGTVS 380 (537)
Q Consensus 308 ~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl-----~~~~~l~~~~~~~~~ 380 (537)
+....+..+|+... ...+.+|||||+||+ +++++++. + |++++|| |+|+ ..+...+..+.+. +
T Consensus 114 ~~~~~l~~~gl~~~--~~~~~~LSgGqkqrv----~laraL~~-~--p~lllLDEPts~LD~~~~~~l~~~l~~~~~~-g 183 (214)
T 1sgw_A 114 EIMDALESVEVLDL--KKKLGELSQGTIRRV----QLASTLLV-N--AEIYVLDDPVVAIDEDSKHKVLKSILEILKE-K 183 (214)
T ss_dssp HHHHHHHHTTCCCT--TSBGGGSCHHHHHHH----HHHHHTTS-C--CSEEEEESTTTTSCTTTHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHcCCCcC--CCChhhCCHHHHHHH----HHHHHHHh-C--CCEEEEECCCcCCCHHHHHHHHHHHHHHHhC-C
Confidence 12233446677665 445899999999999 99999996 5 8999999 9998 2233333444333 3
Q ss_pred EEEEEEeCCCcchhhhhh-hhhhcCCcE
Q psy16304 381 QTLLVSHSLSGRPDDRCQ-VYLMSCNCQ 407 (537)
Q Consensus 381 ~vIlVvdshd~~~~~~~~-i~ll~~G~i 407 (537)
.+++++ +|+......++ .+++..|++
T Consensus 184 ~tiiiv-tHd~~~~~~~~d~v~~~~~~~ 210 (214)
T 1sgw_A 184 GIVIIS-SREELSYCDVNENLHKYSTKI 210 (214)
T ss_dssp SEEEEE-ESSCCTTSSEEEEGGGGBC--
T ss_pred CEEEEE-eCCHHHHHHhCCEEEEeCCcc
Confidence 456666 78888776655 444544443
No 31
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.84 E-value=1.4e-22 Score=201.10 Aligned_cols=185 Identities=14% Similarity=0.087 Sum_probs=127.0
Q ss_pred cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304 188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ 267 (537)
Q Consensus 188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q 267 (537)
.+++.+.+|++++|+||||||||||+++|+|. +.|+ | +|.++| ..+..++ ...++..+++++|
T Consensus 18 ~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl----~~p~-G----~i~~~g-~~~~~~~-------~~~~~~~i~~v~q 80 (249)
T 2qi9_C 18 PLSGEVRAGEILHLVGPNGAGKSTLLARMAGM----TSGK-G----SIQFAG-QPLEAWS-------ATKLALHRAYLSQ 80 (249)
T ss_dssp EEEEEEETTCEEEEECCTTSSHHHHHHHHTTS----SCCE-E----EEEETT-EEGGGSC-------HHHHHHHEEEECS
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC----CCCC-e----EEEECC-EECCcCC-------HHHHhceEEEECC
Confidence 45677889999999999999999999999999 9999 9 999987 4321111 1223467999999
Q ss_pred CCCCCCCccceeeEEeecCcccccCCcccccccC--cCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccc
Q psy16304 268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSAT--HLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN 345 (537)
Q Consensus 268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~--~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la 345 (537)
++.++...+. .+.+.... ... ..+....+..+|+.+.. ...+.+|||||+||+ ++|
T Consensus 81 ~~~~~~~~tv----------------~e~l~~~~~~~~~-~~~~~~~l~~~~l~~~~-~~~~~~LSgGq~qrv----~lA 138 (249)
T 2qi9_C 81 QQTPPFATPV----------------WHYLTLHQHDKTR-TELLNDVAGALALDDKL-GRSTNQLSGGEWQRV----RLA 138 (249)
T ss_dssp CCCCCTTCBH----------------HHHHHTTCSSTTC-HHHHHHHHHHTTCGGGT-TSBGGGCCHHHHHHH----HHH
T ss_pred CCccCCCCcH----------------HHHHHHhhccCCc-HHHHHHHHHHcCChhHh-cCChhhCCHHHHHHH----HHH
Confidence 9876543322 11111000 000 11122334456776554 344899999999999 999
Q ss_pred cceeccCCceE-------EEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhh-h-hhhhcCCcEEE
Q psy16304 346 RARVEYGNKYE-------VFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRC-Q-VYLMSCNCQVY 409 (537)
Q Consensus 346 ~all~~~e~p~-------lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~-~-i~ll~~G~ii~ 409 (537)
++++. + |+ +++|| |+|++.. ...+..+.++ +.+++++ +||....... + ++++++|+++.
T Consensus 139 raL~~-~--p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tviiv-tHd~~~~~~~~d~v~~l~~G~i~~ 213 (249)
T 2qi9_C 139 AVVLQ-I--TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQ-GLAIVMS-SHDLNHTLRHAHRAWLLKGGKMLA 213 (249)
T ss_dssp HHHHH-H--CTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEE-CSCHHHHHHHCSEEEEEETTEEEE
T ss_pred HHHHc-C--CCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhC-CCEEEEE-eCCHHHHHHhCCEEEEEECCEEEE
Confidence 99997 4 78 99999 9999332 2233344334 4567777 8998877543 3 88999999988
Q ss_pred Eecccch
Q psy16304 410 LISAKNL 416 (537)
Q Consensus 410 ~g~nkdl 416 (537)
.+.+.++
T Consensus 214 ~g~~~~~ 220 (249)
T 2qi9_C 214 SGRREEV 220 (249)
T ss_dssp EEEHHHH
T ss_pred eCCHHHH
Confidence 8877665
No 32
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.84 E-value=1.1e-22 Score=201.16 Aligned_cols=187 Identities=14% Similarity=0.076 Sum_probs=120.9
Q ss_pred cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304 188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQ 267 (537)
Q Consensus 188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q 267 (537)
++++.+.+|++++|+||||||||||+++|+|. +.|++| +|.++| .++..++ .... ++.+++++|
T Consensus 20 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~p~~G----~i~~~g-~~~~~~~---~~~~----~~~i~~v~q 83 (243)
T 1mv5_A 20 DISFEAQPNSIIAFAGPSGGGKSTIFSLLERF----YQPTAG----EITIDG-QPIDNIS---LENW----RSQIGFVSQ 83 (243)
T ss_dssp EEEEEECTTEEEEEECCTTSSHHHHHHHHTTS----SCCSBS----CEEETT-EESTTTS---CSCC----TTTCCEECC
T ss_pred EeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC----CCCCCc----EEEECC-EEhhhCC---HHHH----HhhEEEEcC
Confidence 45677889999999999999999999999999 999999 999887 4331111 1122 267999999
Q ss_pred CCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCc----------cchhhhhcCCCcee
Q psy16304 268 TPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGK----------SSIIKRILGEPIIS 337 (537)
Q Consensus 268 ~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gK----------s~li~~LSgG~rqr 337 (537)
++.++.. + +.+ ++...+. .... ..+....+..+|+.+... ...+.+|||||+||
T Consensus 84 ~~~l~~~-t-----v~e-------nl~~~~~--~~~~-~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qr 147 (243)
T 1mv5_A 84 DSAIMAG-T-----IRE-------NLTYGLE--GDYT-DEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQR 147 (243)
T ss_dssp SSCCCCE-E-----HHH-------HTTSCTT--SCSC-HHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHH
T ss_pred CCccccc-c-----HHH-------HHhhhcc--CCCC-HHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHH
Confidence 9875531 1 111 0000000 0000 000001111222221110 12357899999999
Q ss_pred eecccccccceeccCCceEEEEEe--cCch-----hhHHHHHHHHHhcCCEEEEEEeCCCcchhhhhh-hhhhcCCcEEE
Q psy16304 338 LVPTVGFNRARVEYGNKYEVFLYD--LGGS-----EDFRTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQVY 409 (537)
Q Consensus 338 vs~ti~la~all~~~e~p~lllLD--T~Gl-----~~~~~l~~~~~~~~~~vIlVvdshd~~~~~~~~-i~ll~~G~ii~ 409 (537)
+ ++|++++. + |++++|| |+|+ ..+...+..+. . +.+++++ +|+......++ ++++++|+++.
T Consensus 148 v----~lAral~~-~--p~lllLDEPts~LD~~~~~~i~~~l~~~~-~-~~tvi~v-tH~~~~~~~~d~v~~l~~G~i~~ 217 (243)
T 1mv5_A 148 L----AIARAFLR-N--PKILMLDEATASLDSESESMVQKALDSLM-K-GRTTLVI-AHRLSTIVDADKIYFIEKGQITG 217 (243)
T ss_dssp H----HHHHHHHH-C--CSEEEEECCSCSSCSSSCCHHHHHHHHHH-T-TSEEEEE-CCSHHHHHHCSEEEEEETTEECC
T ss_pred H----HHHHHHhc-C--CCEEEEECCcccCCHHHHHHHHHHHHHhc-C-CCEEEEE-eCChHHHHhCCEEEEEECCEEEE
Confidence 9 99999997 5 8999999 9998 34444455554 3 4566777 88887665544 88999999887
Q ss_pred Eecccch
Q psy16304 410 LISAKNL 416 (537)
Q Consensus 410 ~g~nkdl 416 (537)
.+.+.++
T Consensus 218 ~g~~~~~ 224 (243)
T 1mv5_A 218 SGKHNEL 224 (243)
T ss_dssp CSCHHHH
T ss_pred eCCHHHH
Confidence 6666555
No 33
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.83 E-value=9.7e-23 Score=226.17 Aligned_cols=260 Identities=13% Similarity=-0.003 Sum_probs=165.6
Q ss_pred hhhhHHHHHhhhcccccccccccccccCccccccccCCCCCC--c-hhHHHHHHHHHHHHhhh-cccccCCCcccCCCCC
Q psy16304 93 KAEIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAP--T-FEVCIVSLLVHLMRGIL-MGIQNVPNFQTSSVLS 168 (537)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--p-~~~~~~~~l~~~m~~~l-i~~~~l~k~~~~~~~~ 168 (537)
..-..|+..++..++.++.+..+++++.++++.+....++.+ + -.. ..- +.++++++.|++..
T Consensus 289 ~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~-----------~~~~i~~~~v~~~y~~~~-- 355 (595)
T 2yl4_A 289 FWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPKLPFNEGVILNEKS-----------FQGALEFKNVHFAYPARP-- 355 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCSSCSBCCCTTT-----------CCCCEEEEEEEEECSSCT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCCCCCCcCC-----------CCCeEEEEEEEEEeCCCC--
Confidence 446789999999999999999999999999876543322111 1 011 123 56788888775321
Q ss_pred CCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeec
Q psy16304 169 DDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDL 248 (537)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~ 248 (537)
+ ..+-.++++.+++|++++|+||||||||||+++|+|. +.|++| +|.++| .++..++
T Consensus 356 -~------------~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~----~~p~~G----~i~~~g-~~i~~~~- 412 (595)
T 2yl4_A 356 -E------------VPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRL----YDPASG----TISLDG-HDIRQLN- 412 (595)
T ss_dssp -T------------SEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTS----SCCSEE----EEEETT-EETTTBC-
T ss_pred -C------------CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC----cCCCCc----EEEECC-EEhhhCC-
Confidence 0 0123356678889999999999999999999999999 999999 999987 4332111
Q ss_pred CCCchhhHHHHhhhhccccCCCCCCC-ccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCc------c
Q psy16304 249 GGSEDFRTIWKQYLGTVSQTPLGRPD-SRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDN------A 321 (537)
Q Consensus 249 ~G~~~~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~------~ 321 (537)
...+++.+++|+|++.++.. ..+++.+. ... .. ... ..+....+..+|+.+ .
T Consensus 413 ------~~~~~~~i~~v~Q~~~l~~~tv~eni~~~---~~~-~~----------~~~-~~~~~~~~~~~~l~~~~~~l~~ 471 (595)
T 2yl4_A 413 ------PVWLRSKIGTVSQEPILFSCSIAENIAYG---ADD-PS----------SVT-AEEIQRVAEVANAVAFIRNFPQ 471 (595)
T ss_dssp ------HHHHHHSEEEECSSCCCCSSBHHHHHHTT---SSS-TT----------TSC-HHHHHHHHHHTTCHHHHHTSSS
T ss_pred ------HHHHHhceEEEccCCcccCCCHHHHHhhc---CCC-cc----------ccC-HHHHHHHHHHcCCHHHHHhCcc
Confidence 12244779999999987643 11111100 000 00 000 000000011111100 0
Q ss_pred Cccc----hhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH--HHHHHHHhc-CCEEEEEEeCCCcc
Q psy16304 322 GKSS----IIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR--TIWKQYLGT-VSQTLLVSHSLSGR 392 (537)
Q Consensus 322 gKs~----li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~--~l~~~~~~~-~~~vIlVvdshd~~ 392 (537)
+-.. ...+|||||+||+ ++|++++. + |++++|| |++++... .+++.+.+. .+.+++++ +|+..
T Consensus 472 g~~~~~~~~~~~LSgGq~qrv----~iAral~~-~--p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~i-tH~~~ 543 (595)
T 2yl4_A 472 GFNTVVGEKGVLLSGGQKQRI----AIARALLK-N--PKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVI-AHRLS 543 (595)
T ss_dssp GGGCBCSSSSCCCCHHHHHHH----HHHHHHHH-C--CSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEE-CCCHH
T ss_pred cccccccCCCCcCCHHHHHHH----HHHHHHHc-C--CCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEE-ecCHH
Confidence 0011 1367999999999 99999997 5 8999999 99994332 233332221 14567777 89988
Q ss_pred hhhhhh-hhhhcCCcEEEEecccchh
Q psy16304 393 PDDRCQ-VYLMSCNCQVYLISAKNLS 417 (537)
Q Consensus 393 ~~~~~~-i~ll~~G~ii~~g~nkdl~ 417 (537)
....++ ++++++|+++..|+++++.
T Consensus 544 ~~~~~d~i~~l~~G~i~~~g~~~~l~ 569 (595)
T 2yl4_A 544 TIKNANMVAVLDQGKITEYGKHEELL 569 (595)
T ss_dssp HHHHSSEEEEEETTEEEEEECSCC--
T ss_pred HHHcCCEEEEEECCEEEEECCHHHHH
Confidence 776655 8999999999999988874
No 34
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.83 E-value=1.2e-22 Score=203.59 Aligned_cols=219 Identities=13% Similarity=0.065 Sum_probs=136.5
Q ss_pred hhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccc--cCce
Q psy16304 151 ILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISL--VPTV 228 (537)
Q Consensus 151 ~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~--~Pt~ 228 (537)
.++.++++.+.|+... +..++++.+.+|++++|+||||||||||+++|+|. . .|++
T Consensus 19 ~~l~~~~l~~~y~~~~------------------vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl----~~~~p~~ 76 (267)
T 2zu0_C 19 HMLSIKDLHVSVEDKA------------------ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR----EDYEVTG 76 (267)
T ss_dssp -CEEEEEEEEEETTEE------------------EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTC----TTCEEEE
T ss_pred ceEEEEeEEEEECCEE------------------EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCCC
Confidence 4678888988775321 12345677889999999999999999999999997 4 5899
Q ss_pred eeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCC---c
Q psy16304 229 GFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP---L 305 (537)
Q Consensus 229 G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~---~ 305 (537)
| +|.++| .++. ... .....+..+++++|++.+++..+..-.+.. . ........ ...... .
T Consensus 77 G----~I~~~g-~~i~-----~~~-~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~-~----~~~~~~~~-~~~~~~~~~~ 139 (267)
T 2zu0_C 77 G----TVEFKG-KDLL-----ALS-PEDRAGEGIFMAFQYPVEIPGVSNQFFLQT-A----LNAVRSYR-GQETLDRFDF 139 (267)
T ss_dssp E----EEEETT-EEGG-----GSC-HHHHHHHTEEEECSSCCCCTTCBHHHHHHH-H----HHHHHHGG-GCCCCCHHHH
T ss_pred e----EEEECC-EECC-----cCC-HHHHhhCCEEEEccCccccccccHHHHHHH-H----HHhhhhhh-ccccCCHHHH
Confidence 9 999987 3321 111 111123458899999876654332100000 0 00000000 000000 0
Q ss_pred cccCCccEEEeccCccCccchhh-hhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH--HHHHHHHHh--c
Q psy16304 306 VDFRSVPILVLGLDNAGKSSIIK-RILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIWKQYLG--T 378 (537)
Q Consensus 306 ~~~~~~~L~llGl~~~gKs~li~-~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l~~~~~~--~ 378 (537)
..+....+..+|+........+. +|||||+||+ ++|++++. + |++++|| |+|++.. ..+++.+.+ +
T Consensus 140 ~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv----~iAraL~~-~--p~lLlLDEPts~LD~~~~~~l~~~l~~l~~ 212 (267)
T 2zu0_C 140 QDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRN----DILQMAVL-E--PELCILDESDSGLDIDALKVVADGVNSLRD 212 (267)
T ss_dssp HHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHH----HHHHHHHH-C--CSEEEEESTTTTCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHH----HHHHHHHh-C--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Confidence 01122334456775322234465 5999999999 99999997 5 8999999 9999433 333343322 2
Q ss_pred CCEEEEEEeCCCcchhhh--hh-hhhhcCCcEEEEecccch
Q psy16304 379 VSQTLLVSHSLSGRPDDR--CQ-VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 379 ~~~vIlVvdshd~~~~~~--~~-i~ll~~G~ii~~g~nkdl 416 (537)
.+.+++++ +||...... ++ ++++++|+++..+.+.++
T Consensus 213 ~g~tviiv-tHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 252 (267)
T 2zu0_C 213 GKRSFIIV-THYQRILDYIKPDYVHVLYQGRIVKSGDFTLV 252 (267)
T ss_dssp SSCEEEEE-CSSGGGGGTSCCSEEEEEETTEEEEEECTTHH
T ss_pred cCCEEEEE-eeCHHHHHhhcCCEEEEEECCEEEEEcCHHHH
Confidence 24567777 899887764 34 889999999988877654
No 35
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.83 E-value=9.3e-23 Score=225.88 Aligned_cols=267 Identities=14% Similarity=0.092 Sum_probs=168.7
Q ss_pred hhhhHHHHHhhhcccccccccccccccCccccccccCCCCCCchhHHHHHHHHHHHHhhhcccccCCCcccCCCCCCCCC
Q psy16304 93 KAEIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAPTFEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDDPA 172 (537)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~~~~~ 172 (537)
....+|+..+...+..++.+..+++++.++++.+....++..+... . .....+.++++++.|+... .
T Consensus 290 ~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~-------~-~~~~~i~~~~v~~~y~~~~---~-- 356 (587)
T 3qf4_A 290 MQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEEADNALAL-------P-NVEGSVSFENVEFRYFENT---D-- 356 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCCTTCBCC-------S-CCCCCEEEEEEEECSSSSS---C--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCCcccc-------C-CCCCcEEEEEEEEEcCCCC---C--
Confidence 3456899999999999999999999999998866544332221110 0 0022467778887764321 0
Q ss_pred cchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCc
Q psy16304 173 PTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSE 252 (537)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~ 252 (537)
.+-.++++.+++|++++|+||||||||||+++|+|. +.|++| +|.++| .++..++
T Consensus 357 -----------~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~----~~~~~G----~i~i~g-~~i~~~~----- 411 (587)
T 3qf4_A 357 -----------PVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRL----IDPERG----RVEVDE-LDVRTVK----- 411 (587)
T ss_dssp -----------CSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTS----SCCSEE----EEEESS-SBGGGBC-----
T ss_pred -----------cceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC----ccCCCc----EEEECC-EEcccCC-----
Confidence 123356678889999999999999999999999999 999999 999887 3322111
Q ss_pred hhhHHHHhhhhccccCCCCCCC-ccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEE--eccCccCccchhh
Q psy16304 253 DFRTIWKQYLGTVSQTPLGRPD-SRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILV--LGLDNAGKSSIIK 328 (537)
Q Consensus 253 ~~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~l--lGl~~~gKs~li~ 328 (537)
...+++.+++|+|++.++.. ..+++.+... .+.++ +.+.+... .+ ...+.. -|+...- .....
T Consensus 412 --~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~---~~~~~~~~-~~------~~~i~~l~~g~~~~~-~~~~~ 478 (587)
T 3qf4_A 412 --LKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDE---IVEAAKIA-QI------HDFIISLPEGYDSRV-ERGGR 478 (587)
T ss_dssp --HHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHH---HHHHHHHT-TC------HHHHHTSSSGGGCEE-CSSSC
T ss_pred --HHHHHhheEEECCCCcCcCccHHHHHhccCCCCCHHH---HHHHHHHh-Cc------HHHHHhcccchhhHh-cCCCC
Confidence 12345789999999987643 1111110000 00000 00000000 00 000000 0221111 12256
Q ss_pred hhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH--HHHHHHHHh-cCCEEEEEEeCCCcchhhhhh-hhhh
Q psy16304 329 RILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIWKQYLG-TVSQTLLVSHSLSGRPDDRCQ-VYLM 402 (537)
Q Consensus 329 ~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l~~~~~~-~~~~vIlVvdshd~~~~~~~~-i~ll 402 (537)
+|||||+||+ ++|++++. + |++++|| |++++.. ..+.+.+.+ ..+.+++++ +|+......++ ++++
T Consensus 479 ~LSgGqrQrv----~lARal~~-~--p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~i-tH~l~~~~~~d~i~vl 550 (587)
T 3qf4_A 479 NFSGGQKQRL----SIARALVK-K--PKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFII-TQKIPTALLADKILVL 550 (587)
T ss_dssp SSCHHHHHHH----HHHHHHHT-C--CSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEE-ESCHHHHTTSSEEEEE
T ss_pred CcCHHHHHHH----HHHHHHHc-C--CCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEE-ecChHHHHhCCEEEEE
Confidence 7999999999 99999996 5 8999999 9999433 223333322 224566666 78888777655 9999
Q ss_pred cCCcEEEEecccchhh
Q psy16304 403 SCNCQVYLISAKNLSN 418 (537)
Q Consensus 403 ~~G~ii~~g~nkdl~~ 418 (537)
++|+++..|+++++.+
T Consensus 551 ~~G~i~~~g~~~el~~ 566 (587)
T 3qf4_A 551 HEGKVAGFGTHKELLE 566 (587)
T ss_dssp ETTEEEEEECHHHHHH
T ss_pred ECCEEEEECCHHHHHh
Confidence 9999999999988753
No 36
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.83 E-value=1.6e-22 Score=201.25 Aligned_cols=196 Identities=14% Similarity=0.123 Sum_probs=129.0
Q ss_pred hcccccCCCccc-CCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceee
Q psy16304 152 LMGIQNVPNFQT-SSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF 230 (537)
Q Consensus 152 li~~~~l~k~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~ 230 (537)
++.++++.+.|+ ... +-..+++.+.+|++++|+||||||||||+++|+|. ..|++|
T Consensus 4 ~l~i~~l~~~y~~~~~------------------vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl----~~p~~G- 60 (253)
T 2nq2_C 4 ALSVENLGFYYQAENF------------------LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGI----HRPIQG- 60 (253)
T ss_dssp EEEEEEEEEEETTTTE------------------EEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTS----SCCSEE-
T ss_pred eEEEeeEEEEeCCCCe------------------EEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCc-
Confidence 467788888775 221 12345677889999999999999999999999999 999999
Q ss_pred eeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCccccccc-C---cCCc-
Q psy16304 231 NRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSA-T---HLPL- 305 (537)
Q Consensus 231 t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~-~---~l~~- 305 (537)
+|.+ + ..+++++|++.++...+. .+ ++....... . ....
T Consensus 61 ---~I~~-----------------~----~~i~~v~q~~~~~~~~tv-----~e-------nl~~~~~~~~~~~~~~~~~ 104 (253)
T 2nq2_C 61 ---KIEV-----------------Y----QSIGFVPQFFSSPFAYSV-----LD-------IVLMGRSTHINTFAKPKSH 104 (253)
T ss_dssp ---EEEE-----------------C----SCEEEECSCCCCSSCCBH-----HH-------HHHGGGGGGSCTTCCCCHH
T ss_pred ---EEEE-----------------e----ccEEEEcCCCccCCCCCH-----HH-------HHHHhhhhhcccccCCCHH
Confidence 5541 1 358888998775543222 01 000000000 0 0000
Q ss_pred -cccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHh
Q psy16304 306 -VDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLG 377 (537)
Q Consensus 306 -~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~ 377 (537)
..+....+..+|+.+.. ...+.+|||||+||+ ++|++++. + |++++|| |+|++.. ...+..+.+
T Consensus 105 ~~~~~~~~l~~~~l~~~~-~~~~~~LSgGq~qrv----~lAraL~~-~--p~lllLDEPts~LD~~~~~~l~~~l~~l~~ 176 (253)
T 2nq2_C 105 DYQVAMQALDYLNLTHLA-KREFTSLSGGQRQLI----LIARAIAS-E--CKLILLDEPTSALDLANQDIVLSLLIDLAQ 176 (253)
T ss_dssp HHHHHHHHHHHTTCGGGT-TSBGGGSCHHHHHHH----HHHHHHHT-T--CSEEEESSSSTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHh-cCChhhCCHHHHHHH----HHHHHHHc-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 11122334466776654 344899999999999 99999996 5 8999999 9999332 223334433
Q ss_pred cCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEecccch
Q psy16304 378 TVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAKNL 416 (537)
Q Consensus 378 ~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nkdl 416 (537)
+.+.+++++ +||.......+ ++++++|+ +..+.+.++
T Consensus 177 ~~g~tvi~v-tHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~ 215 (253)
T 2nq2_C 177 SQNMTVVFT-THQPNQVVAIANKTLLLNKQN-FKFGETRNI 215 (253)
T ss_dssp TSCCEEEEE-ESCHHHHHHHCSEEEEEETTE-EEEEEHHHH
T ss_pred hcCCEEEEE-ecCHHHHHHhCCEEEEEeCCe-EecCCHHHH
Confidence 324566666 89988775433 88899999 777766655
No 37
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.82 E-value=4e-22 Score=197.89 Aligned_cols=211 Identities=14% Similarity=0.021 Sum_probs=129.1
Q ss_pred hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304 152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN 231 (537)
Q Consensus 152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t 231 (537)
++.++++.+.|+... +-.++++.+.+|++++|+||||||||||+++|+|.. .+.|++|
T Consensus 3 ~l~~~~l~~~y~~~~------------------vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~--~~~p~~G-- 60 (250)
T 2d2e_A 3 QLEIRDLWASIDGET------------------ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDP--EYTVERG-- 60 (250)
T ss_dssp EEEEEEEEEEETTEE------------------EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCT--TCEEEEE--
T ss_pred eEEEEeEEEEECCEE------------------EEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCCce--
Confidence 466778888765321 123456778899999999999999999999999950 0368999
Q ss_pred eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCc--C---Ccc
Q psy16304 232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATH--L---PLV 306 (537)
Q Consensus 232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~--l---~~~ 306 (537)
+|.++| .++ .... .+...+..+++++|++.+++..+.. + ++......... . ...
T Consensus 61 --~I~~~g-~~~-----~~~~-~~~~~~~~i~~v~q~~~~~~~~tv~-----e-------~l~~~~~~~~~~~~~~~~~~ 119 (250)
T 2d2e_A 61 --EILLDG-ENI-----LELS-PDERARKGLFLAFQYPVEVPGVTIA-----N-------FLRLALQAKLGREVGVAEFW 119 (250)
T ss_dssp --EEEETT-EEC-----TTSC-HHHHHHTTBCCCCCCCC-CCSCBHH-----H-------HHHHHHHHHHTSCCCHHHHH
T ss_pred --EEEECC-EEC-----CCCC-HHHHHhCcEEEeccCCccccCCCHH-----H-------HHHHHHHhhccccCCHHHHH
Confidence 999987 432 1111 1112234588999998866543320 0 00000000000 0 000
Q ss_pred ccCCccEEEeccC-ccCccchhhh-hcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH--HHHHHHHHh--c
Q psy16304 307 DFRSVPILVLGLD-NAGKSSIIKR-ILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIWKQYLG--T 378 (537)
Q Consensus 307 ~~~~~~L~llGl~-~~gKs~li~~-LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l~~~~~~--~ 378 (537)
.+....+..+|+. ... ...+.+ |||||+||+ ++|++++. + |++++|| |+|++.. ..+++.+.+ .
T Consensus 120 ~~~~~~l~~~gl~~~~~-~~~~~~~LSgGqkQrv----~iAraL~~-~--p~lllLDEPts~LD~~~~~~l~~~l~~l~~ 191 (250)
T 2d2e_A 120 TKVKKALELLDWDESYL-SRYLNEGFSGGEKKRN----EILQLLVL-E--PTYAVLDETDSGLDIDALKVVARGVNAMRG 191 (250)
T ss_dssp HHHHHHHHHHTCCGGGG-GSBTTCC----HHHHH----HHHHHHHH-C--CSEEEEECGGGTTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHcCCChhHh-cCCcccCCCHHHHHHH----HHHHHHHc-C--CCEEEEeCCCcCCCHHHHHHHHHHHHHHHh
Confidence 1122334456773 443 444788 999999999 99999997 5 8999999 9999432 223333222 2
Q ss_pred CCEEEEEEeCCCcchhhhh--h-hhhhcCCcEEEEeccc
Q psy16304 379 VSQTLLVSHSLSGRPDDRC--Q-VYLMSCNCQVYLISAK 414 (537)
Q Consensus 379 ~~~vIlVvdshd~~~~~~~--~-i~ll~~G~ii~~g~nk 414 (537)
.+.+++++ +||....... + ++++++|+++..+.+.
T Consensus 192 ~g~tvi~v-tHd~~~~~~~~~d~v~~l~~G~i~~~g~~~ 229 (250)
T 2d2e_A 192 PNFGALVI-THYQRILNYIQPDKVHVMMDGRVVATGGPE 229 (250)
T ss_dssp TTCEEEEE-CSSSGGGGTSCCSEEEEEETTEEEEEESHH
T ss_pred cCCEEEEE-ecCHHHHHHhcCCEEEEEECCEEEEEeCHH
Confidence 34567777 8998877653 4 8889999998877654
No 38
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.82 E-value=3.5e-22 Score=239.18 Aligned_cols=270 Identities=13% Similarity=0.036 Sum_probs=180.0
Q ss_pred hhhhhHHHHHhhhcccccccccccccccCccccccccCCCCCCchhHHHHHHHHHHHHhhhcccccCCCcccCCCCCCCC
Q psy16304 92 YKAEIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAPTFEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDDP 171 (537)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~~~~ 171 (537)
+..-..|+..+...+..++.+..++++++++++.++.++++.++-.. ..-...-+.+++++..|++.. +
T Consensus 362 ~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~-------~~~~~g~I~~~nvsF~Y~~~~---~- 430 (1321)
T 4f4c_A 362 VMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRKPVIDSSSKAGRK-------DMKIKGDITVENVHFTYPSRP---D- 430 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCSSCSSSCCCC-------CCCCCCCEEEEEEEECCSSST---T-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccc-------CCCCCCcEEEEEeeeeCCCCC---C-
Confidence 34456899999999999999999999999999876655443322110 000012356677777665421 1
Q ss_pred CcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCC
Q psy16304 172 APTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGS 251 (537)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~ 251 (537)
...-.++++.+++|++++|||++|||||||+++|.|. +.|+.| +|.++| .++..++.
T Consensus 431 -----------~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~----~~~~~G----~I~idG-~~i~~~~~--- 487 (1321)
T 4f4c_A 431 -----------VPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRY----YDVLKG----KITIDG-VDVRDINL--- 487 (1321)
T ss_dssp -----------SCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTS----SCCSEE----EEEETT-EETTTSCH---
T ss_pred -----------CceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccc----cccccC----cccCCC-ccchhccH---
Confidence 1123456688889999999999999999999999999 999999 999997 55443333
Q ss_pred chhhHHHHhhhhccccCCCCCCC-ccceeeEEee-cCcccccCCcccc---cccCcCCccccCCccEEEeccCccCccch
Q psy16304 252 EDFRTIWKQYLGTVSQTPLGRPD-SRTCQVYLIM-CGVHQVSGIPDEL---TSATHLPLVDFRSVPILVLGLDNAGKSSI 326 (537)
Q Consensus 252 ~~~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~D-s~~~~~~~l~~~l---~~~~~l~~~~~~~~~L~llGl~~~gKs~l 326 (537)
..++..+++|+|++.++.. ..+++.+.-+ .+.+++..+.+.. +.+..++..... .+|..+.
T Consensus 488 ----~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T-----~vGe~G~----- 553 (1321)
T 4f4c_A 488 ----EFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNT-----LVGDRGT----- 553 (1321)
T ss_dssp ----HHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSS-----EESSSSC-----
T ss_pred ----HHHhhcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCcc-----EecCCCC-----
Confidence 3445889999999998865 3444433221 1222111111000 111222211111 4555443
Q ss_pred hhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH--HHHHHHHHhc-CCEEEEEEeCCCcchhhhhh-hh
Q psy16304 327 IKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIWKQYLGT-VSQTLLVSHSLSGRPDDRCQ-VY 400 (537)
Q Consensus 327 i~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l~~~~~~~-~~~vIlVvdshd~~~~~~~~-i~ 400 (537)
.||||||||+ ++||+++. + |++++|| |++++.. ..+.+.+.+. .+.+++++ +|.......++ ++
T Consensus 554 --~LSGGQkQRi----aiARAl~~-~--~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iii-aHrls~i~~aD~Ii 623 (1321)
T 4f4c_A 554 --QLSGGQKQRI----AIARALVR-N--PKILLLDEATSALDAESEGIVQQALDKAAKGRTTIII-AHRLSTIRNADLII 623 (1321)
T ss_dssp --CCCHHHHHHH----HHHHHHTT-C--CSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEE-CSCTTTTTTCSEEE
T ss_pred --CCCHHHHHHH----HHHHHHcc-C--CCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEE-cccHHHHHhCCEEE
Confidence 3999999999 99999996 4 8999999 9999432 2222333221 23466666 79988888877 99
Q ss_pred hhcCCcEEEEecccchhhh
Q psy16304 401 LMSCNCQVYLISAKNLSNG 419 (537)
Q Consensus 401 ll~~G~ii~~g~nkdl~~~ 419 (537)
+|++|+++..|++++|.+.
T Consensus 624 vl~~G~ive~Gth~eL~~~ 642 (1321)
T 4f4c_A 624 SCKNGQVVEVGDHRALMAQ 642 (1321)
T ss_dssp EEETTEEEEEECHHHHHTT
T ss_pred EeeCCeeeccCCHHHHHHh
Confidence 9999999999999998643
No 39
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.82 E-value=1.7e-22 Score=242.02 Aligned_cols=263 Identities=12% Similarity=-0.007 Sum_probs=169.4
Q ss_pred HHHHHhhhcccccccccccccccCccccccccCCCCCCchhHHHHHHHHHHHHhhhcccccCCCcccCCCCCCCCCcchh
Q psy16304 97 WAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAPTFEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDDPAPTFE 176 (537)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~~~~~~~~~ 176 (537)
.|+..+...+..++....++++++++++.+..++++..+-+. --...-+.+++++..|+++. .
T Consensus 1029 ~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~--------~~~~g~I~f~nVsf~Y~~~~-----~---- 1091 (1321)
T 4f4c_A 1029 STLGFATSYFPEYAKATFAGGIIFGMLRKISKIDSLSLAGEK--------KKLYGKVIFKNVRFAYPERP-----E---- 1091 (1321)
T ss_dssp SSTTGGGGHHHHHHHHHHHHHHHHHHHHCCCSSCTTCCCSBC--------CCCCCCEEEEEEEECCTTSC-----S----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCCccCCCCC--------CCCCCeEEEEEEEEeCCCCC-----C----
Confidence 345555555566666667777777776655444332221111 00012355666666654321 1
Q ss_pred hcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhH
Q psy16304 177 NFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRT 256 (537)
Q Consensus 177 ~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~ 256 (537)
..+-++++|.+++|+++||||++|||||||+++|.|. +.|++| +|.++| .++.-++. .
T Consensus 1092 ------~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl----~~p~~G----~I~iDG-~di~~i~~-------~ 1149 (1321)
T 4f4c_A 1092 ------IEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERF----YDTLGG----EIFIDG-SEIKTLNP-------E 1149 (1321)
T ss_dssp ------SCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTS----SCCSSS----EEEETT-EETTTBCH-------H
T ss_pred ------CccccceeEEECCCCEEEEECCCCChHHHHHHHHhcC----ccCCCC----EEEECC-EEhhhCCH-------H
Confidence 1123456788899999999999999999999999999 999999 999998 55544333 3
Q ss_pred HHHhhhhccccCCCCCCC-ccceeeEEeecCcccccCCcccc------cccCcCCccccCCccEEEeccCccCccchhhh
Q psy16304 257 IWKQYLGTVSQTPLGRPD-SRTCQVYLIMCGVHQVSGIPDEL------TSATHLPLVDFRSVPILVLGLDNAGKSSIIKR 329 (537)
Q Consensus 257 ~~~~~i~~v~Q~~~l~~~-~~~~il~v~Ds~~~~~~~l~~~l------~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~ 329 (537)
.++..+++|+|++.+|.. ..+++.+..|......+++.+.+ +.+..++..... .+|..+. .
T Consensus 1150 ~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT-----~vge~G~-------~ 1217 (1321)
T 4f4c_A 1150 HTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFET-----RVGDRGT-------Q 1217 (1321)
T ss_dssp HHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCS-----EETTTSC-------S
T ss_pred HHHhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCC-----EecCCCc-------c
Confidence 344889999999998875 44444333331100001111111 111111111111 3443332 4
Q ss_pred hcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHHH--HHHHHHhc-CCEEEEEEeCCCcchhhhhh-hhhhc
Q psy16304 330 ILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRT--IWKQYLGT-VSQTLLVSHSLSGRPDDRCQ-VYLMS 403 (537)
Q Consensus 330 LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~--l~~~~~~~-~~~vIlVvdshd~~~~~~~~-i~ll~ 403 (537)
||||||||+ ++|||++. + |++++|| |++++...+ +.+.+.+. .+.+++++ +|...+...++ +++|+
T Consensus 1218 LSgGQrQri----aiARAllr-~--~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~I-AHRLsTi~~aD~I~Vld 1289 (1321)
T 4f4c_A 1218 LSGGQKQRI----AIARALVR-N--PKILLLDEATSALDTESEKVVQEALDRAREGRTCIVI-AHRLNTVMNADCIAVVS 1289 (1321)
T ss_dssp SCHHHHHHH----HHHHHHHS-C--CSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEE-CSSSSTTTTCSEEEEES
T ss_pred cCHHHHHHH----HHHHHHHh-C--CCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEe-ccCHHHHHhCCEEEEEE
Confidence 999999999 99999996 4 8999999 999954443 33444333 34578888 89999988777 99999
Q ss_pred CCcEEEEecccchhh
Q psy16304 404 CNCQVYLISAKNLSN 418 (537)
Q Consensus 404 ~G~ii~~g~nkdl~~ 418 (537)
+|+++..|++.+|.+
T Consensus 1290 ~G~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1290 NGTIIEKGTHTQLMS 1304 (1321)
T ss_dssp SSSEEEEECHHHHHH
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999999864
No 40
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.82 E-value=7.1e-22 Score=197.25 Aligned_cols=210 Identities=13% Similarity=0.095 Sum_probs=130.7
Q ss_pred hhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceee
Q psy16304 151 ILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF 230 (537)
Q Consensus 151 ~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~ 230 (537)
.++.++++.+.|+... . . .+..++++.+.+|++++|+||||||||||+++|+|. +.| .|
T Consensus 16 ~~l~i~~l~~~y~~~~---~-~-----------~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~~-~G- 74 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQT---N-H-----------RTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRF----YDA-EG- 74 (260)
T ss_dssp CCEEEEEEEECCTTCC---S-S-----------CSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS----SCC-EE-
T ss_pred CeEEEEEEEEEeCCCC---c-C-----------ceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcc----CCC-Ce-
Confidence 4578889988876421 0 0 012345677889999999999999999999999999 776 89
Q ss_pred eeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCC
Q psy16304 231 NRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRS 310 (537)
Q Consensus 231 t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~ 310 (537)
+|.++| .++..+ . ...++..+++++|++.++.. + +.+ .+..........+..
T Consensus 75 ---~I~i~g-~~i~~~-----~--~~~~~~~i~~v~Q~~~l~~~-t-----v~e-----------nl~~~~~~~~~~~~~ 126 (260)
T 2ghi_A 75 ---DIKIGG-KNVNKY-----N--RNSIRSIIGIVPQDTILFNE-T-----IKY-----------NILYGKLDATDEEVI 126 (260)
T ss_dssp ---EEEETT-EEGGGB-----C--HHHHHTTEEEECSSCCCCSE-E-----HHH-----------HHHTTCTTCCHHHHH
T ss_pred ---EEEECC-EEhhhc-----C--HHHHhccEEEEcCCCccccc-C-----HHH-----------HHhccCCCCCHHHHH
Confidence 999987 433111 1 11234679999999876531 1 111 000000000000000
Q ss_pred ccEEEecc-------CccC---ccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH--HHHHHHHH
Q psy16304 311 VPILVLGL-------DNAG---KSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIWKQYL 376 (537)
Q Consensus 311 ~~L~llGl-------~~~g---Ks~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l~~~~~ 376 (537)
..+..+|+ +... ....+.+|||||+||+ ++|++++. + |++++|| |++++.. ..+++.+.
T Consensus 127 ~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv----~lAraL~~-~--p~lllLDEPts~LD~~~~~~i~~~l~ 199 (260)
T 2ghi_A 127 KATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRI----AIARCLLK-D--PKIVIFDEATSSLDSKTEYLFQKAVE 199 (260)
T ss_dssp HHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHH----HHHHHHHH-C--CSEEEEECCCCTTCHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHH----HHHHHHHc-C--CCEEEEECccccCCHHHHHHHHHHHH
Confidence 00111111 1100 0123678999999999 99999997 5 8999999 9999332 22222222
Q ss_pred h-cCCEEEEEEeCCCcchhhhhh-hhhhcCCcEEEEecccchh
Q psy16304 377 G-TVSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLISAKNLS 417 (537)
Q Consensus 377 ~-~~~~vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g~nkdl~ 417 (537)
+ ..+.+++++ +|+......++ ++++++|+++..+.+.++.
T Consensus 200 ~l~~~~tviiv-tH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 241 (260)
T 2ghi_A 200 DLRKNRTLIII-AHRLSTISSAESIILLNKGKIVEKGTHKDLL 241 (260)
T ss_dssp HHTTTSEEEEE-CSSGGGSTTCSEEEEEETTEEEEEECHHHHH
T ss_pred HhcCCCEEEEE-cCCHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 1 124567777 88887766544 8899999999888877763
No 41
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.81 E-value=4.1e-22 Score=209.57 Aligned_cols=206 Identities=13% Similarity=0.100 Sum_probs=134.2
Q ss_pred hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304 152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN 231 (537)
Q Consensus 152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t 231 (537)
.+.++++.+.|+... ..+...++|.+.+|++++|+||||||||||+++|+|. +. ++|
T Consensus 19 ~i~~~~l~~~y~~~~----------------~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl----~~-~~G-- 75 (390)
T 3gd7_A 19 QMTVKDLTAKYTEGG----------------NAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRL----LN-TEG-- 75 (390)
T ss_dssp CEEEEEEEEESSSSS----------------CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTC----SE-EEE--
T ss_pred eEEEEEEEEEecCCC----------------eEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCC----CC-CCe--
Confidence 467788888874211 0123446688889999999999999999999999999 76 899
Q ss_pred eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCc
Q psy16304 232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSV 311 (537)
Q Consensus 232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~ 311 (537)
+|.++| .+ ..... ...+++.+++|||++.+++. + +.+ .+...... ...+...
T Consensus 76 --~I~i~G-~~-----i~~~~--~~~~rr~ig~v~Q~~~lf~~-t-----v~e-----------nl~~~~~~-~~~~v~~ 127 (390)
T 3gd7_A 76 --EIQIDG-VS-----WDSIT--LEQWRKAFGVIPQKVFIFSG-T-----FRK-----------NLDPNAAH-SDQEIWK 127 (390)
T ss_dssp --EEEESS-CB-----TTSSC--HHHHHHTEEEESCCCCCCSE-E-----HHH-----------HHCTTCCS-CHHHHHH
T ss_pred --EEEECC-EE-----CCcCC--hHHHhCCEEEEcCCcccCcc-C-----HHH-----------Hhhhcccc-CHHHHHH
Confidence 898887 22 21111 12234779999999887642 1 111 11000000 0001112
Q ss_pred cEEEeccCccCccchhhh-----------hcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH--HHHHHHHH
Q psy16304 312 PILVLGLDNAGKSSIIKR-----------ILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIWKQYL 376 (537)
Q Consensus 312 ~L~llGl~~~gKs~li~~-----------LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l~~~~~ 376 (537)
.+..+|+.... ..++.+ |||||+||+ ++|++++. + |++++|| |++++.. ..+++.+.
T Consensus 128 ~l~~~~L~~~~-~~~p~~l~~~i~~~g~~LSGGqrQRv----alARAL~~-~--P~lLLLDEPts~LD~~~~~~l~~~l~ 199 (390)
T 3gd7_A 128 VADEVGLRSVI-EQFPGKLDFVLVDGGCVLSHGHKQLM----CLARSVLS-K--AKILLLDEPSAHLDPVTYQIIRRTLK 199 (390)
T ss_dssp HHHHTTCHHHH-TTSTTGGGCEECTTTTTSCHHHHHHH----HHHHHHHT-T--CCEEEEESHHHHSCHHHHHHHHHHHH
T ss_pred HHHHhCCHHHH-hhcccccccccccccccCCHHHHHHH----HHHHHHhc-C--CCEEEEeCCccCCCHHHHHHHHHHHH
Confidence 22244444333 223444 999999999 99999996 5 8999999 9999432 22333333
Q ss_pred hc-CCEEEEEEeCCCcchhhhhh-hhhhcCCcEEEEecccchh
Q psy16304 377 GT-VSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLISAKNLS 417 (537)
Q Consensus 377 ~~-~~~vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g~nkdl~ 417 (537)
+. .+.+++++ +|+.+....++ +++|++|+++..|++.++.
T Consensus 200 ~~~~~~tvi~v-tHd~e~~~~aDri~vl~~G~i~~~g~~~el~ 241 (390)
T 3gd7_A 200 QAFADCTVILC-EARIEAMLECDQFLVIEENKVRQYDSILELY 241 (390)
T ss_dssp TTTTTSCEEEE-CSSSGGGTTCSEEEEEETTEEEEESSHHHHH
T ss_pred HHhCCCEEEEE-EcCHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 32 23566666 78876665555 9999999999999988874
No 42
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.80 E-value=2.6e-21 Score=193.44 Aligned_cols=184 Identities=14% Similarity=0.057 Sum_probs=123.7
Q ss_pred ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhh-cc
Q psy16304 187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLG-TV 265 (537)
Q Consensus 187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~-~v 265 (537)
..+++.+. |++++|+||||||||||+++|+|. . |++| +|.++| .++. +. .. ++.++ ++
T Consensus 22 ~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl----~-p~~G----~I~~~g-~~~~--~~---~~-----~~~i~~~v 80 (263)
T 2pjz_A 22 ENINLEVN-GEKVIILGPNGSGKTTLLRAISGL----L-PYSG----NIFING-MEVR--KI---RN-----YIRYSTNL 80 (263)
T ss_dssp EEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTS----S-CCEE----EEEETT-EEGG--GC---SC-----CTTEEECC
T ss_pred EeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCC----C-CCCc----EEEECC-EECc--ch---HH-----hhheEEEe
Confidence 45678899 999999999999999999999999 9 9999 999987 3321 10 11 25689 99
Q ss_pred ccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccC-ccCccchhhhhcCCCceeeeccccc
Q psy16304 266 SQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLD-NAGKSSIIKRILGEPIISLVPTVGF 344 (537)
Q Consensus 266 ~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~-~~gKs~li~~LSgG~rqrvs~ti~l 344 (537)
+|++.+ ..+. .+ ++..... .... ...+....+..+|+. ... ...+.+|||||+||+ ++
T Consensus 81 ~Q~~~l--~~tv-----~e-------nl~~~~~-~~~~-~~~~~~~~l~~~gl~~~~~-~~~~~~LSgGqkqRv----~l 139 (263)
T 2pjz_A 81 PEAYEI--GVTV-----ND-------IVYLYEE-LKGL-DRDLFLEMLKALKLGEEIL-RRKLYKLSAGQSVLV----RT 139 (263)
T ss_dssp GGGSCT--TSBH-----HH-------HHHHHHH-HTCC-CHHHHHHHHHHTTCCGGGG-GSBGGGSCHHHHHHH----HH
T ss_pred CCCCcc--CCcH-----HH-------HHHHhhh-hcch-HHHHHHHHHHHcCCChhHh-cCChhhCCHHHHHHH----HH
Confidence 999774 2111 00 0000000 0000 001112233456776 443 445899999999999 99
Q ss_pred ccceeccCCceEEEEEe--cCchhhH--HHHHHHHHhcCCEEEEEEeCCCcchhh--hh-hhhhhcCCcEEEEecccchh
Q psy16304 345 NRARVEYGNKYEVFLYD--LGGSEDF--RTIWKQYLGTVSQTLLVSHSLSGRPDD--RC-QVYLMSCNCQVYLISAKNLS 417 (537)
Q Consensus 345 a~all~~~e~p~lllLD--T~Gl~~~--~~l~~~~~~~~~~vIlVvdshd~~~~~--~~-~i~ll~~G~ii~~g~nkdl~ 417 (537)
|++++. + |++++|| |+|++.. ..+++.+.+... +++++ +||..... +. +++++++|+++..+.+.++.
T Consensus 140 AraL~~-~--p~lllLDEPts~LD~~~~~~l~~~L~~~~~-tviiv-tHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~ 214 (263)
T 2pjz_A 140 SLALAS-Q--PEIVGLDEPFENVDAARRHVISRYIKEYGK-EGILV-THELDMLNLYKEYKAYFLVGNRLQGPISVSELL 214 (263)
T ss_dssp HHHHHT-C--CSEEEEECTTTTCCHHHHHHHHHHHHHSCS-EEEEE-ESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHH
T ss_pred HHHHHh-C--CCEEEEECCccccCHHHHHHHHHHHHHhcC-cEEEE-EcCHHHHHHhcCceEEEEECCEEEEecCHHHHH
Confidence 999996 5 8999999 9999433 333344433334 66666 78877654 34 57889999999888877763
No 43
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.79 E-value=5e-21 Score=188.56 Aligned_cols=199 Identities=16% Similarity=0.116 Sum_probs=123.8
Q ss_pred hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304 152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN 231 (537)
Q Consensus 152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t 231 (537)
++.++++.+.|+... . .+..++++.+.+|++++|+||||||||||+++|+|. +.|++|
T Consensus 3 ~l~~~~l~~~y~~~~---~-------------~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~p~~G-- 60 (237)
T 2cbz_A 3 SITVRNATFTWARSD---P-------------PTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAE----MDKVEG-- 60 (237)
T ss_dssp CEEEEEEEEESCTTS---C-------------CSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTC----SEEEEE--
T ss_pred eEEEEEEEEEeCCCC---C-------------ceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcC----CCCCCc--
Confidence 467788888775310 0 012345677889999999999999999999999999 999999
Q ss_pred eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEee--cCcccccCCcccccccCcCCccccC
Q psy16304 232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIM--CGVHQVSGIPDELTSATHLPLVDFR 309 (537)
Q Consensus 232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~D--s~~~~~~~l~~~l~~~~~l~~~~~~ 309 (537)
+|.++| .+++++|++.++ ..+ +.+ .-..... .+..... ...
T Consensus 61 --~I~~~g---------------------~i~~v~Q~~~~~-~~t-----v~enl~~~~~~~--~~~~~~~------~~~ 103 (237)
T 2cbz_A 61 --HVAIKG---------------------SVAYVPQQAWIQ-NDS-----LRENILFGCQLE--EPYYRSV------IQA 103 (237)
T ss_dssp --EEEECS---------------------CEEEECSSCCCC-SEE-----HHHHHHTTSCCC--TTHHHHH------HHH
T ss_pred --eEEECC---------------------EEEEEcCCCcCC-CcC-----HHHHhhCccccC--HHHHHHH------HHH
Confidence 888876 166777775422 111 111 0000000 0000000 000
Q ss_pred CccEEEeccCccC----ccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH--HHHHHHHH--h--
Q psy16304 310 SVPILVLGLDNAG----KSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF--RTIWKQYL--G-- 377 (537)
Q Consensus 310 ~~~L~llGl~~~g----Ks~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~--~~l~~~~~--~-- 377 (537)
......++....+ ....+.+|||||+||+ ++|++++. + |++++|| |+|++.. ..+++.+. +
T Consensus 104 ~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv----~lAraL~~-~--p~lllLDEPts~LD~~~~~~i~~~l~~~~~~ 176 (237)
T 2cbz_A 104 CALLPDLEILPSGDRTEIGEKGVNLSGGQKQRV----SLARAVYS-N--ADIYLFDDPLSAVDAHVGKHIFENVIGPKGM 176 (237)
T ss_dssp TTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHH----HHHHHHHH-C--CSEEEEESTTTTSCHHHHHHHHHHTTSTTST
T ss_pred HhhHHHHHhccccccccccCCCCCCCHHHHHHH----HHHHHHhc-C--CCEEEEeCcccccCHHHHHHHHHHHHHHHhh
Confidence 0000011111100 1233678999999999 99999997 5 8999999 9999543 33344442 1
Q ss_pred cCCEEEEEEeCCCcchhhhhh-hhhhcCCcEEEEecccchh
Q psy16304 378 TVSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLISAKNLS 417 (537)
Q Consensus 378 ~~~~vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g~nkdl~ 417 (537)
..+.+++++ +|+......++ ++++++|+++..+.+.++.
T Consensus 177 ~~~~tviiv-tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 216 (237)
T 2cbz_A 177 LKNKTRILV-THSMSYLPQVDVIIVMSGGKISEMGSYQELL 216 (237)
T ss_dssp TTTSEEEEE-CSCSTTGGGSSEEEEEETTEEEEEECHHHHH
T ss_pred cCCCEEEEE-ecChHHHHhCCEEEEEeCCEEEEeCCHHHHh
Confidence 124566666 88887665544 8889999999888777663
No 44
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.79 E-value=5.2e-21 Score=187.42 Aligned_cols=202 Identities=15% Similarity=0.187 Sum_probs=123.2
Q ss_pred hcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee
Q psy16304 152 LMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN 231 (537)
Q Consensus 152 li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t 231 (537)
++.++++.+.|+... . .+-..+++.+.+|++++|+||||||||||+++|+|. +.|++|
T Consensus 6 ~l~~~~l~~~y~~~~---~-------------~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~p~~G-- 63 (229)
T 2pze_A 6 EVVMENVTAFWEEGG---T-------------PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE----LEPSEG-- 63 (229)
T ss_dssp EEEEEEEEECSSTTS---C-------------CSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTS----SCCSEE--
T ss_pred eEEEEEEEEEeCCCC---c-------------eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CcCCcc--
Confidence 467788888774210 0 012345677889999999999999999999999999 999999
Q ss_pred eEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccc--eeeEEeecCcccccCCcccccccCcCCccccC
Q psy16304 232 RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRT--CQVYLIMCGVHQVSGIPDELTSATHLPLVDFR 309 (537)
Q Consensus 232 ~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~--~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~ 309 (537)
+|.++| .+++++|++.+++. +. .+.+........ ..+.+... .+.
T Consensus 64 --~i~~~g---------------------~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~---~~~~~~~~-~l~----- 110 (229)
T 2pze_A 64 --KIKHSG---------------------RISFCSQFSWIMPG-TIKENIIFGVSYDEYR---YRSVIKAC-QLE----- 110 (229)
T ss_dssp --EEEECS---------------------CEEEECSSCCCCSB-CHHHHHHTTSCCCHHH---HHHHHHHT-TCH-----
T ss_pred --EEEECC---------------------EEEEEecCCcccCC-CHHHHhhccCCcChHH---HHHHHHHh-CcH-----
Confidence 888875 16677777664432 11 000000000000 00000000 000
Q ss_pred CccEEEeccCc-cCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH--HHHHHHHhc--CCEE
Q psy16304 310 SVPILVLGLDN-AGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR--TIWKQYLGT--VSQT 382 (537)
Q Consensus 310 ~~~L~llGl~~-~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~--~l~~~~~~~--~~~v 382 (537)
..+..+.... ..-...+.+|||||+||+ ++|++++. + |++++|| |+|++... .+++.+.+. .+.+
T Consensus 111 -~~~~~~~~~~~~~~~~~~~~LSgGqkqrv----~lAral~~-~--p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~t 182 (229)
T 2pze_A 111 -EDISKFAEKDNIVLGEGGITLSGGQRARI----SLARAVYK-D--ADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKT 182 (229)
T ss_dssp -HHHTTSTTGGGSCBCTTCTTSCHHHHHHH----HHHHHHHS-C--CSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSE
T ss_pred -HHHHhCcccccccccCCCCcCCHHHHHHH----HHHHHHhc-C--CCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCE
Confidence 0000000000 000112578999999999 99999996 5 8999999 99994433 333432221 2456
Q ss_pred EEEEeCCCcchhhhhh-hhhhcCCcEEEEecccchh
Q psy16304 383 LLVSHSLSGRPDDRCQ-VYLMSCNCQVYLISAKNLS 417 (537)
Q Consensus 383 IlVvdshd~~~~~~~~-i~ll~~G~ii~~g~nkdl~ 417 (537)
++++ +|+......++ ++++++|+++..+.+.++.
T Consensus 183 vi~v-tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 217 (229)
T 2pze_A 183 RILV-TSKMEHLKKADKILILHEGSSYFYGTFSELQ 217 (229)
T ss_dssp EEEE-CCCHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred EEEE-cCChHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 7777 89987765544 8899999999888776663
No 45
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.77 E-value=7.7e-21 Score=227.11 Aligned_cols=265 Identities=15% Similarity=0.084 Sum_probs=171.2
Q ss_pred hhhhHHHHHhhhcccccccccccccccCccccccccCCCCC----CchhHHHHHHHHHHHHhhhcccccCCCcccCCCCC
Q psy16304 93 KAEIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPA----PTFEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLS 168 (537)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~p~~~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~ 168 (537)
-.-..|+..+...+..++.+..++++++++++.++.++++. +|-.. ...+.++++++.|++..
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~-----------~g~i~~~~v~~~y~~~~-- 401 (1284)
T 3g5u_A 335 LIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNI-----------QGNLEFKNIHFSYPSRK-- 401 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCSSCCSSCCCCTTC-----------CCCEEEEEEEECCSSTT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcccccCCCCCCC-----------CCeEEEEEEEEEcCCCC--
Confidence 34467899999999999999999999999988665443211 11111 22467788888776431
Q ss_pred CCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeec
Q psy16304 169 DDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDL 248 (537)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~ 248 (537)
+ ..+-.++++.+++|++++|||+||||||||+++|.|. +.|+.| +|.++| .++..++.
T Consensus 402 -~------------~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~----~~~~~G----~i~i~g-~~i~~~~~ 459 (1284)
T 3g5u_A 402 -E------------VQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRL----YDPLDG----MVSIDG-QDIRTINV 459 (1284)
T ss_dssp -S------------CCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTS----SCCSEE----EEEETT-EEGGGSCH
T ss_pred -C------------CcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCe----EEEECC-EEHHhCCH
Confidence 0 0123456788889999999999999999999999999 999999 999997 54432221
Q ss_pred CCCchhhHHHHhhhhccccCCCCCCC-ccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEEe--ccCccCcc
Q psy16304 249 GGSEDFRTIWKQYLGTVSQTPLGRPD-SRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVL--GLDNAGKS 324 (537)
Q Consensus 249 ~G~~~~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~ll--Gl~~~gKs 324 (537)
..++..+++|+|++.++.. ..+++.+... .+.++ +.+.+.... . ...+..+ |+...- .
T Consensus 460 -------~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~---~~~~~~~~~-~------~~~i~~l~~g~~t~~-~ 521 (1284)
T 3g5u_A 460 -------RYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDE---IEKAVKEAN-A------YDFIMKLPHQFDTLV-G 521 (1284)
T ss_dssp -------HHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHH---HHHHHHHTT-C------HHHHHHSTTGGGCCC-S
T ss_pred -------HHHHhheEEEcCCCccCCccHHHHHhcCCCCCCHHH---HHHHHHHhC-c------HHHHHhccccccccc-c
Confidence 2344779999999987754 1122111100 00000 000000000 0 0000000 111100 1
Q ss_pred chhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHHHHH-HHHHh--cCCEEEEEEeCCCcchhhhhh-
Q psy16304 325 SIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRTIW-KQYLG--TVSQTLLVSHSLSGRPDDRCQ- 398 (537)
Q Consensus 325 ~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~l~-~~~~~--~~~~vIlVvdshd~~~~~~~~- 398 (537)
.....|||||+||+ ++|++++. + |++++|| |++++...+.+ ...++ ..+.+++++ +|+......++
T Consensus 522 ~~g~~LSgGq~Qri----aiARal~~-~--p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~i-tH~l~~i~~~d~ 593 (1284)
T 3g5u_A 522 ERGAQLSGGQKQRI----AIARALVR-N--PKILLLDEATSALDTESEAVVQAALDKAREGRTTIVI-AHRLSTVRNADV 593 (1284)
T ss_dssp SSSCSSCHHHHHHH----HHHHHHHH-C--CSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEE-CSCHHHHTTCSE
T ss_pred CCCCccCHHHHHHH----HHHHHHhc-C--CCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEE-ecCHHHHHcCCE
Confidence 11456999999999 99999997 5 8999999 99995443322 22221 124577777 89998887766
Q ss_pred hhhhcCCcEEEEecccchhh
Q psy16304 399 VYLMSCNCQVYLISAKNLSN 418 (537)
Q Consensus 399 i~ll~~G~ii~~g~nkdl~~ 418 (537)
++++++|+++..|++.++..
T Consensus 594 i~vl~~G~i~~~g~~~~l~~ 613 (1284)
T 3g5u_A 594 IAGFDGGVIVEQGNHDELMR 613 (1284)
T ss_dssp EEECSSSCCCCEECHHHHHH
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999988754
No 46
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.76 E-value=1.9e-20 Score=223.78 Aligned_cols=261 Identities=14% Similarity=0.036 Sum_probs=163.9
Q ss_pred hHHHHHhhhcccccccccccccccCccccccccCCCCC----CchhHHHHHHHHHHHHhhhcccccCCCcccCCCCCCCC
Q psy16304 96 IWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPA----PTFEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDDP 171 (537)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~p~~~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~~~~ 171 (537)
..|+..+...+..++....+++++.++++.++...++. +|-.. ...+.++++...|+... +
T Consensus 981 ~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~-----------~g~i~~~~v~~~y~~~~---~- 1045 (1284)
T 3g5u_A 981 AMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNML-----------EGNVQFSGVVFNYPTRP---S- 1045 (1284)
T ss_dssp HHHHHHHTSSSCCSTHHHHHHHHHHHHHHSCCSSSSCCSSCCCTTTT-----------SCCEEEEEEEBCCSCGG---G-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCC-----------CCcEEEEEEEEECCCCC---C-
Confidence 46778888888888888888888888877554332211 11111 22456677777665321 0
Q ss_pred CcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCC
Q psy16304 172 APTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGS 251 (537)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~ 251 (537)
..+..++++.+.+|+++||+|+||||||||+++|.|. +.|+.| +|.++| .++. ..
T Consensus 1046 -----------~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~----~~p~~G----~I~i~g-~~i~-----~~ 1100 (1284)
T 3g5u_A 1046 -----------IPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERF----YDPMAG----SVFLDG-KEIK-----QL 1100 (1284)
T ss_dssp -----------CCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTS----SCCSEE----EEESSS-SCTT-----SS
T ss_pred -----------CeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcC----cCCCCC----EEEECC-EEcc-----cC
Confidence 1123456788999999999999999999999999999 999999 999887 3321 11
Q ss_pred chhhHHHHhhhhccccCCCCCCC-ccceeeEEeecCcccccCCccccc------ccCcCCccccCCccEEEeccCccCcc
Q psy16304 252 EDFRTIWKQYLGTVSQTPLGRPD-SRTCQVYLIMCGVHQVSGIPDELT------SATHLPLVDFRSVPILVLGLDNAGKS 324 (537)
Q Consensus 252 ~~~r~~~~~~i~~v~Q~~~l~~~-~~~~il~v~Ds~~~~~~~l~~~l~------~~~~l~~~~~~~~~L~llGl~~~gKs 324 (537)
. ...++..+++|+|++.++.. ..+++.+.........+.+.+.+. .+..+..... ..+|.
T Consensus 1101 ~--~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gld-----t~vge------ 1167 (1284)
T 3g5u_A 1101 N--VQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYN-----TRVGD------ 1167 (1284)
T ss_dssp C--HHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGG-----CBCST------
T ss_pred C--HHHHHhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccc-----cccCC------
Confidence 1 12345789999999976643 111111100000000000000000 0011100000 01221
Q ss_pred chhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH--HHHHHHHh-cCCEEEEEEeCCCcchhhhhh-
Q psy16304 325 SIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR--TIWKQYLG-TVSQTLLVSHSLSGRPDDRCQ- 398 (537)
Q Consensus 325 ~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~--~l~~~~~~-~~~~vIlVvdshd~~~~~~~~- 398 (537)
....|||||+||+ ++|++++. + |++++|| |++++... .+.+.+.+ ..+.+++++ +|++.+...++
T Consensus 1168 -~G~~LSgGq~Qrv----~iARal~~-~--p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~i-sH~l~~i~~~dr 1238 (1284)
T 3g5u_A 1168 -KGTQLSGGQKQRI----AIARALVR-Q--PHILLLDEATSALDTESEKVVQEALDKAREGRTCIVI-AHRLSTIQNADL 1238 (1284)
T ss_dssp -TSCSSCHHHHHHH----HHHHHHHH-C--CSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEE-CSCTTGGGSCSE
T ss_pred -CCCccCHHHHHHH----HHHHHHHc-C--CCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEE-ecCHHHHHcCCE
Confidence 1346999999999 99999997 5 8999999 99994332 23333322 224567777 89998887666
Q ss_pred hhhhcCCcEEEEecccchhh
Q psy16304 399 VYLMSCNCQVYLISAKNLSN 418 (537)
Q Consensus 399 i~ll~~G~ii~~g~nkdl~~ 418 (537)
+++|++|+++..|++.++.+
T Consensus 1239 i~vl~~G~i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A 1239 IVVIQNGKVKEHGTHQQLLA 1258 (1284)
T ss_dssp EEEEETBEEEEEECHHHHHH
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999988854
No 47
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.74 E-value=1.2e-19 Score=183.89 Aligned_cols=180 Identities=16% Similarity=0.184 Sum_probs=112.2
Q ss_pred ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304 187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS 266 (537)
Q Consensus 187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~ 266 (537)
.+++|.+.+|++++|+||||||||||+++|+|. +.|++| +|.++| .+++++
T Consensus 55 ~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl----~~p~~G----~I~~~g---------------------~i~~v~ 105 (290)
T 2bbs_A 55 KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE----LEPSEG----KIKHSG---------------------RISFCS 105 (290)
T ss_dssp EEEEEEECTTCEEEEEESTTSSHHHHHHHHTTS----SCEEEE----EEECCS---------------------CEEEEC
T ss_pred EeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC----CCCCCc----EEEECC---------------------EEEEEe
Confidence 345677889999999999999999999999999 999999 888765 267777
Q ss_pred cCCCCCCCccceeeEEee-cCcccccC--CcccccccCcCCccccCCccEEEeccC-ccCccchhhhhcCCCceeeeccc
Q psy16304 267 QTPLGRPDSRTCQVYLIM-CGVHQVSG--IPDELTSATHLPLVDFRSVPILVLGLD-NAGKSSIIKRILGEPIISLVPTV 342 (537)
Q Consensus 267 Q~~~l~~~~~~~il~v~D-s~~~~~~~--l~~~l~~~~~l~~~~~~~~~L~llGl~-~~gKs~li~~LSgG~rqrvs~ti 342 (537)
|++.++.. +. .+ -....... ....+... ++. ..+..+... .......+.+|||||+||+
T Consensus 106 Q~~~l~~~-tv-----~enl~~~~~~~~~~~~~~~~~-~l~------~~l~~~~~~~~~~~~~~~~~LSgGq~QRv---- 168 (290)
T 2bbs_A 106 QNSWIMPG-TI-----KENIIGVSYDEYRYRSVIKAC-QLE------EDISKFAEKDNIVLGEGGITLSGGQRARI---- 168 (290)
T ss_dssp SSCCCCSS-BH-----HHHHHTTCCCHHHHHHHHHHT-TCH------HHHHTSTTGGGCBC----CCCCHHHHHHH----
T ss_pred CCCccCcc-cH-----HHHhhCcccchHHHHHHHHHh-ChH------HHHHhccccccchhcCccCcCCHHHHHHH----
Confidence 77665432 11 01 00000000 00000000 000 000000000 0000112568999999999
Q ss_pred ccccceeccCCceEEEEEe--cCchhhH--HHHHHHHHhc--CCEEEEEEeCCCcchhhhhh-hhhhcCCcEEEEecccc
Q psy16304 343 GFNRARVEYGNKYEVFLYD--LGGSEDF--RTIWKQYLGT--VSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLISAKN 415 (537)
Q Consensus 343 ~la~all~~~e~p~lllLD--T~Gl~~~--~~l~~~~~~~--~~~vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g~nkd 415 (537)
++|++++. + |++++|| |+|++.. ..+++.+.+. .+.+++++ +|+......++ ++++++|+++..+.+.+
T Consensus 169 ~lAraL~~-~--p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviiv-tHd~~~~~~~d~i~~l~~G~i~~~g~~~~ 244 (290)
T 2bbs_A 169 SLARAVYK-D--ADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILV-TSKMEHLKKADKILILHEGSSYFYGTFSE 244 (290)
T ss_dssp HHHHHHHS-C--CSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEE-CCCHHHHHHSSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHC-C--CCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEE-ecCHHHHHcCCEEEEEECCeEEEeCCHHH
Confidence 99999996 5 8999999 9999433 3333432221 24567777 89987765544 88999999998888776
Q ss_pred h
Q psy16304 416 L 416 (537)
Q Consensus 416 l 416 (537)
+
T Consensus 245 l 245 (290)
T 2bbs_A 245 L 245 (290)
T ss_dssp H
T ss_pred H
Confidence 6
No 48
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.67 E-value=2.5e-18 Score=190.54 Aligned_cols=173 Identities=13% Similarity=0.123 Sum_probs=116.6
Q ss_pred ccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCC
Q psy16304 191 LFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL 270 (537)
Q Consensus 191 l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~ 270 (537)
+.+.+|+++||+||||||||||+++|+|. ..|+.| +|.+. ..+++++|++.
T Consensus 377 ~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl----~~p~~G----~I~~~---------------------~~i~~v~Q~~~ 427 (607)
T 3bk7_A 377 GEIRKGEVIGIVGPNGIGKTTFVKMLAGV----EEPTEG----KVEWD---------------------LTVAYKPQYIK 427 (607)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHHTS----SCCSBS----CCCCC---------------------CCEEEECSSCC
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHhcC----CCCCce----EEEEe---------------------eEEEEEecCcc
Confidence 34578999999999999999999999999 999999 44321 23788888765
Q ss_pred CCCCccceeeEEeecCcccccCCccccccc--CcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccce
Q psy16304 271 GRPDSRTCQVYLIMCGVHQVSGIPDELTSA--THLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRAR 348 (537)
Q Consensus 271 l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~--~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~al 348 (537)
.....+. .+.+... ..+.........+..+|+.... ...+.+|||||+||+ ++|+++
T Consensus 428 ~~~~~tv----------------~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSGGe~QRv----~iAraL 486 (607)
T 3bk7_A 428 AEYEGTV----------------YELLSKIDSSKLNSNFYKTELLKPLGIIDLY-DRNVEDLSGGELQRV----AIAATL 486 (607)
T ss_dssp CCCSSBH----------------HHHHHHHHHHHHHCHHHHHHTHHHHTCTTTT-TSBGGGCCHHHHHHH----HHHHHH
T ss_pred CCCCCcH----------------HHHHHhhhccCCCHHHHHHHHHHHcCCchHh-cCChhhCCHHHHHHH----HHHHHH
Confidence 3322111 0000000 0000011122334466776544 455899999999999 999999
Q ss_pred eccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcC--CcEEEEecccchh
Q psy16304 349 VEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSC--NCQVYLISAKNLS 417 (537)
Q Consensus 349 l~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~--G~ii~~g~nkdl~ 417 (537)
+. + |++++|| |+|++.. ..+++.+.++.+.+++++ +||..+....+ ++++++ |.+...+++.++.
T Consensus 487 ~~-~--p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~v-sHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~ 562 (607)
T 3bk7_A 487 LR-D--ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVV-EHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMR 562 (607)
T ss_dssp TS-C--CSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEE-CSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred Hh-C--CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEE-eCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHH
Confidence 96 5 8999999 9999332 233344444445677777 89998887544 777774 7777778887764
No 49
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.67 E-value=6e-18 Score=185.10 Aligned_cols=177 Identities=13% Similarity=0.055 Sum_probs=110.1
Q ss_pred cccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCC
Q psy16304 190 SLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTP 269 (537)
Q Consensus 190 ~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~ 269 (537)
++.+.+|+++||+|+||||||||+++|+|. ..|++| +|.+.+ .. +++++|+.
T Consensus 288 ~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl----~~p~~G----~i~~~~-~~-------------------i~~~~q~~ 339 (538)
T 3ozx_A 288 NGEAKEGEIIGILGPNGIGKTTFARILVGE----ITADEG----SVTPEK-QI-------------------LSYKPQRI 339 (538)
T ss_dssp CEEEETTCEEEEECCTTSSHHHHHHHHTTS----SCCSBC----CEESSC-CC-------------------EEEECSSC
T ss_pred cceECCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCc----EEEECC-ee-------------------eEeechhc
Confidence 445679999999999999999999999999 999999 776654 22 34444443
Q ss_pred CCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccccccccee
Q psy16304 270 LGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARV 349 (537)
Q Consensus 270 ~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all 349 (537)
......+. .+ ....... ..... ........+..+|+.... ...+.+|||||+||+ ++|++++
T Consensus 340 ~~~~~~tv-----~~----~l~~~~~--~~~~~--~~~~~~~~l~~~~l~~~~-~~~~~~LSGGq~QRv----~iAraL~ 401 (538)
T 3ozx_A 340 FPNYDGTV-----QQ----YLENASK--DALST--SSWFFEEVTKRLNLHRLL-ESNVNDLSGGELQKL----YIAATLA 401 (538)
T ss_dssp CCCCSSBH-----HH----HHHHHCS--STTCT--TSHHHHHTTTTTTGGGCT-TSBGGGCCHHHHHHH----HHHHHHH
T ss_pred ccccCCCH-----HH----HHHHhhh--hccch--hHHHHHHHHHHcCCHHHh-cCChhhCCHHHHHHH----HHHHHHH
Confidence 21110000 00 0000000 00000 000011222345655443 455899999999999 9999999
Q ss_pred ccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcC--CcEEEEecccch
Q psy16304 350 EYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSC--NCQVYLISAKNL 416 (537)
Q Consensus 350 ~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~--G~ii~~g~nkdl 416 (537)
. + |++++|| |+|++.. ..+++.+.++.+.+++++ +||...+...+ +++|+. +.....+.+.++
T Consensus 402 ~-~--p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~v-sHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~ 475 (538)
T 3ozx_A 402 K-E--ADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFII-DHDLSIHDYIADRIIVFKGEPEKAGLATSPVTL 475 (538)
T ss_dssp S-C--CSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEE-CSCHHHHHHHCSEEEEEEEETTTEEEECCCEEH
T ss_pred c-C--CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEE-eCCHHHHHHhCCEEEEEeCCcceeccCCChHHH
Confidence 6 5 8999999 9999432 233345545556778888 89999887644 777764 444444444444
No 50
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.67 E-value=2.7e-18 Score=188.02 Aligned_cols=174 Identities=13% Similarity=0.111 Sum_probs=114.9
Q ss_pred cccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCC
Q psy16304 190 SLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTP 269 (537)
Q Consensus 190 ~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~ 269 (537)
++.+.+|+++||+|+||||||||+++|+|. ..|+.| +|.+. ..+++++|+.
T Consensus 306 ~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl----~~p~~G----~i~~~---------------------~~i~~v~Q~~ 356 (538)
T 1yqt_A 306 PGEIKKGEVIGIVGPNGIGKTTFVKMLAGV----EEPTEG----KIEWD---------------------LTVAYKPQYI 356 (538)
T ss_dssp CEEEETTCEEEEECCTTSSHHHHHHHHHTS----SCCSBC----CCCCC---------------------CCEEEECSSC
T ss_pred ccccCCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCe----EEEEC---------------------ceEEEEecCC
Confidence 344579999999999999999999999999 999999 44321 2377888876
Q ss_pred CCCCCccceeeEEeecCcccccCCccccccc--CcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccc
Q psy16304 270 LGRPDSRTCQVYLIMCGVHQVSGIPDELTSA--THLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA 347 (537)
Q Consensus 270 ~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~--~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~a 347 (537)
......+. .+ .+... ..+.........+..+|+.... ...+.+|||||+||+ ++|++
T Consensus 357 ~~~~~~tv-----~~-----------~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSGGe~qrv----~lAra 415 (538)
T 1yqt_A 357 KADYEGTV-----YE-----------LLSKIDASKLNSNFYKTELLKPLGIIDLY-DREVNELSGGELQRV----AIAAT 415 (538)
T ss_dssp CCCCSSBH-----HH-----------HHHHHHHHHHTCHHHHHHTTTTTTCGGGT-TSBGGGCCHHHHHHH----HHHHH
T ss_pred cCCCCCcH-----HH-----------HHHhhhccCCCHHHHHHHHHHHcCChhhh-cCChhhCCHHHHHHH----HHHHH
Confidence 53222111 00 00000 0000001112223345665433 455899999999999 99999
Q ss_pred eeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcC--CcEEEEecccch
Q psy16304 348 RVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSC--NCQVYLISAKNL 416 (537)
Q Consensus 348 ll~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~--G~ii~~g~nkdl 416 (537)
++. + |++++|| |+|++.. ...++.+.++.+.+++++ +||..+....+ +++|++ |.+...+.+.++
T Consensus 416 L~~-~--p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~v-sHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~ 491 (538)
T 1yqt_A 416 LLR-D--ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVV-EHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGM 491 (538)
T ss_dssp HTS-C--CSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEE-CSCHHHHHHHCSEEEEEEEETTTEEEECCCEEH
T ss_pred HHh-C--CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEE-eCCHHHHHHhCCEEEEEeCCcceEeecCCHHHH
Confidence 996 4 8999999 9999332 233344443345677777 89998887644 777774 677777887776
Q ss_pred h
Q psy16304 417 S 417 (537)
Q Consensus 417 ~ 417 (537)
.
T Consensus 492 ~ 492 (538)
T 1yqt_A 492 R 492 (538)
T ss_dssp H
T ss_pred H
Confidence 3
No 51
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.65 E-value=5.1e-17 Score=182.62 Aligned_cols=213 Identities=13% Similarity=-0.012 Sum_probs=110.4
Q ss_pred ccccccccCCCCCeEEEEeCCCCcHHHHH---------------------HHHhCCCCccccCceeeeeEEEEECCcEEE
Q psy16304 185 LPTHLSLFDFRSVPILVLGLDNAGKSSII---------------------KRILGEPIISLVPTVGFNRARVEYGNKYEV 243 (537)
Q Consensus 185 ~~~~~~l~~~~G~~vgLVG~NGAGKSTLL---------------------~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i 243 (537)
+..+++|.+.+|+++||+||||||||||+ +++.|. ..|+.| .+...+ ..+
T Consensus 33 ~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l----~~~~~~----~i~~~~-~~i 103 (670)
T 3ux8_A 33 NLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQM----EKPDVD----AIEGLS-PAI 103 (670)
T ss_dssp TCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC------------------CCCS----EEESCC-CEE
T ss_pred ceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhccc----ccCCcc----ceeccc-cce
Confidence 45567788999999999999999999997 666666 677766 554332 122
Q ss_pred EEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEee-cCc--ccccCCcccccccCcCC---ccccC-----C--
Q psy16304 244 FLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIM-CGV--HQVSGIPDELTSATHLP---LVDFR-----S-- 310 (537)
Q Consensus 244 ~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~D-s~~--~~~~~l~~~l~~~~~l~---~~~~~-----~-- 310 (537)
.+.+. . .....+..+++++|...++......+..+.. ... .....+.+.+.....+. ..... .
T Consensus 104 ~~~~~---~-~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (670)
T 3ux8_A 104 SIDQK---T-TSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREI 179 (670)
T ss_dssp EESSC---C------CCBHHHHTTCC-------------------------CC--------------------------C
T ss_pred EecCc---h-hhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHH
Confidence 21111 1 1111124567777765433221111111100 000 00000111111110000 00000 0
Q ss_pred ----ccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchh-----hHHHHHHHHHhcC
Q psy16304 311 ----VPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSE-----DFRTIWKQYLGTV 379 (537)
Q Consensus 311 ----~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~-----~~~~l~~~~~~~~ 379 (537)
..+..+|+........+.+|||||+||+ ++|++++..++ |++++|| |+|++ .+..+++.+.+.
T Consensus 180 ~~~~~~l~~~gL~~~~~~~~~~~LSGGe~QRv----~iArAL~~~p~-~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~- 253 (670)
T 3ux8_A 180 RDRLGFLQNVGLDYLTLSRSAGTLSGGEAQRI----RLATQIGSRLT-GVLYVLDEPSIGLHQRDNDRLIATLKSMRDL- 253 (670)
T ss_dssp HHHHHHHHHTTCTTCCTTCBGGGSCHHHHHHH----HHHHHHHTCCC-SCEEEEECTTTTCCGGGHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHcCCchhhhcCCcccCCHHHHHHH----HHHHHHhhCCC-CCEEEEECCccCCCHHHHHHHHHHHHHHHHc-
Confidence 0133466655433566899999999999 99999997332 3499999 99992 233333454333
Q ss_pred CEEEEEEeCCCcchhhhhh-hhhh------cCCcEEEEecccchh
Q psy16304 380 SQTLLVSHSLSGRPDDRCQ-VYLM------SCNCQVYLISAKNLS 417 (537)
Q Consensus 380 ~~vIlVvdshd~~~~~~~~-i~ll------~~G~ii~~g~nkdl~ 417 (537)
+.+++++ +||+.....++ ++++ ++|+++..++++++.
T Consensus 254 g~tvi~v-tHd~~~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 254 GNTLIVV-EHDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp TCEEEEE-CCCHHHHHHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred CCEEEEE-eCCHHHHhhCCEEEEecccccccCCEEEEecCHHHHh
Confidence 5677777 89988766555 7777 899999999888764
No 52
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.63 E-value=2.3e-17 Score=182.61 Aligned_cols=179 Identities=12% Similarity=0.092 Sum_probs=115.9
Q ss_pred cccccCCCC-----CeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhh
Q psy16304 188 HLSLFDFRS-----VPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYL 262 (537)
Q Consensus 188 ~~~l~~~~G-----~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i 262 (537)
.++|.+.+| +++||+|+||||||||+++|+|. ..|+.| +. +.+ ..+
T Consensus 365 ~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl----~~p~~G----~~-~~~--------------------~~i 415 (608)
T 3j16_B 365 DFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGA----LKPDEG----QD-IPK--------------------LNV 415 (608)
T ss_dssp SCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTS----SCCSBC----CC-CCS--------------------CCE
T ss_pred ceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcC----CCCCCC----cC-ccC--------------------CcE
Confidence 456666666 88999999999999999999999 999999 21 000 235
Q ss_pred hccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccc
Q psy16304 263 GTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTV 342 (537)
Q Consensus 263 ~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti 342 (537)
++++|+.......+. .+ .+.. ...............+..+|+.+.. ...+.+|||||+||+
T Consensus 416 ~~~~q~~~~~~~~tv-----~e-------~~~~--~~~~~~~~~~~~~~~l~~l~l~~~~-~~~~~~LSGGqkQRv---- 476 (608)
T 3j16_B 416 SMKPQKIAPKFPGTV-----RQ-------LFFK--KIRGQFLNPQFQTDVVKPLRIDDII-DQEVQHLSGGELQRV---- 476 (608)
T ss_dssp EEECSSCCCCCCSBH-----HH-------HHHH--HCSSTTTSHHHHHHTHHHHTSTTTS-SSBSSSCCHHHHHHH----
T ss_pred EEecccccccCCccH-----HH-------HHHH--HhhcccccHHHHHHHHHHcCChhhh-cCChhhCCHHHHHHH----
Confidence 666665432111110 00 0000 0000000001112234456666554 455899999999999
Q ss_pred ccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcC--CcEEEEe
Q psy16304 343 GFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSC--NCQVYLI 411 (537)
Q Consensus 343 ~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~--G~ii~~g 411 (537)
++|++++. + |++++|| |+|++.. ..+++.+.++.+.+++++ +||..+....+ ++++++ |+++..+
T Consensus 477 ~iAraL~~-~--p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviiv-tHdl~~~~~~aDrvivl~~~~g~~~~~g 552 (608)
T 3j16_B 477 AIVLALGI-P--ADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIV-EHDFIMATYLADKVIVFEGIPSKNAHAR 552 (608)
T ss_dssp HHHHHTTS-C--CSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEE-CSCHHHHHHHCSEEEECEEETTTEEECC
T ss_pred HHHHHHHh-C--CCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEE-eCCHHHHHHhCCEEEEEeCCCCeEEecC
Confidence 99999996 5 8999999 9999422 233345444445677777 89998887644 777875 8899999
Q ss_pred cccchhh
Q psy16304 412 SAKNLSN 418 (537)
Q Consensus 412 ~nkdl~~ 418 (537)
++.++..
T Consensus 553 ~p~~~~~ 559 (608)
T 3j16_B 553 APESLLT 559 (608)
T ss_dssp CCEEHHH
T ss_pred ChHHHhh
Confidence 9988754
No 53
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.61 E-value=4.6e-17 Score=180.48 Aligned_cols=180 Identities=13% Similarity=0.162 Sum_probs=105.2
Q ss_pred cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEe-ecCCCc--hh-hHHH--Hhh
Q psy16304 188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLY-DLGGSE--DF-RTIW--KQY 261 (537)
Q Consensus 188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~-D~~G~~--~~-r~~~--~~~ 261 (537)
+++ .+.+|+++||+|+||||||||+++|+|. +.|+.| ++. .+ .. ... ...|.. .. .... ...
T Consensus 110 ~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gl----l~p~~G----~~~-~~-~~-~~~~~~~G~~~~~~~~~~~~~~~~ 177 (607)
T 3bk7_A 110 RLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQ----LIPNLC----EDN-DS-WD-NVIRAFRGNELQNYFERLKNGEIR 177 (607)
T ss_dssp CCC-CCCTTSEEEEECCTTSSHHHHHHHHTTS----SCCCTT----TTC-CC-HH-HHHHHTTTSTHHHHHHHHHHTSCC
T ss_pred CCC-CCCCCCEEEEECCCCChHHHHHHHHhCC----CCCCCC----ccc-cc-cc-hhhheeCCEehhhhhhhhhhhhcc
Confidence 345 5789999999999999999999999999 999999 310 00 00 000 011111 00 0000 012
Q ss_pred hhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecc
Q psy16304 262 LGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPT 341 (537)
Q Consensus 262 i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~t 341 (537)
+++++|.....+.... ..+.+.+... ....+....+..+|+.... ...+.+|||||+||+
T Consensus 178 i~~~~q~~~~~~~~~~-------------~tv~e~l~~~---~~~~~~~~~L~~lgL~~~~-~~~~~~LSGGekQRv--- 237 (607)
T 3bk7_A 178 PVVKPQYVDLLPKAVK-------------GKVRELLKKV---DEVGKFEEVVKELELENVL-DRELHQLSGGELQRV--- 237 (607)
T ss_dssp CEEECSCGGGGGGTCC-------------SBHHHHHHHT---CCSSCHHHHHHHTTCTTGG-GSBGGGCCHHHHHHH---
T ss_pred eEEeechhhhchhhcc-------------ccHHHHhhhh---HHHHHHHHHHHHcCCCchh-CCChhhCCHHHHHHH---
Confidence 3344444221110000 0011111100 0111223345567877654 555899999999999
Q ss_pred cccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCC
Q psy16304 342 VGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCN 405 (537)
Q Consensus 342 i~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G 405 (537)
++|++++. + |++++|| |++++.. ..+++.+.+. +.+++++ +||+......+ +++++++
T Consensus 238 -aIAraL~~-~--P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~-g~tvIiv-sHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 238 -AIAAALLR-K--AHFYFFDEPSSYLDIRQRLKVARVIRRLANE-GKAVLVV-EHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp -HHHHHHHS-C--CSEEEEECTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEE-CSCHHHHHHHCSEEEEEESC
T ss_pred -HHHHHHhc-C--CCEEEEECCcccCCHHHHHHHHHHHHHHHhc-CCEEEEE-ecChHHHHhhCCEEEEECCC
Confidence 99999996 5 8999999 9999433 3334555443 5677777 89988876543 6677643
No 54
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.60 E-value=2.6e-17 Score=189.23 Aligned_cols=94 Identities=13% Similarity=0.056 Sum_probs=65.9
Q ss_pred cEEEeccCccC-ccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHHH-HHHHHHhcCCEEEEEEe
Q psy16304 312 PILVLGLDNAG-KSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFRT-IWKQYLGTVSQTLLVSH 387 (537)
Q Consensus 312 ~L~llGl~~~g-Ks~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~~-l~~~~~~~~~~vIlVvd 387 (537)
.+..+|+.... ....+.+|||||+||+ +++++++. + |++++|| |+|++.... .+...++..+++++++
T Consensus 883 ~Le~lGL~~~~~~~~~~~~LSGGQkQRV----aLArAL~~-~--P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~tVIiI- 954 (986)
T 2iw3_A 883 HCSMLGLDPEIVSHSRIRGLSGGQKVKL----VLAAGTWQ-R--PHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIII- 954 (986)
T ss_dssp HHHHTTCCHHHHHHSCGGGCCHHHHHHH----HHHHHHTT-C--CSEEEEECGGGTCCHHHHHHHHHHHHSCSSEEEEE-
T ss_pred HHHHcCCCchhhcCCCccccCHHHHHHH----HHHHHHHh-C--CCEEEEECCccCCCHHHHHHHHHHHHHhCCEEEEE-
Confidence 34456765321 2445889999999999 99999996 4 8999999 999954332 2234444545677777
Q ss_pred CCCcchhhhhh--hhhhcCCcEEEEecc
Q psy16304 388 SLSGRPDDRCQ--VYLMSCNCQVYLISA 413 (537)
Q Consensus 388 shd~~~~~~~~--i~ll~~G~ii~~g~n 413 (537)
+||.++....+ ++++++|+++..|.+
T Consensus 955 SHD~e~v~~l~DrVivL~~G~Iv~~G~~ 982 (986)
T 2iw3_A 955 THSAEFTKNLTEEVWAVKDGRMTPSGHN 982 (986)
T ss_dssp CSCHHHHTTTCCEEECCBTTBCCC----
T ss_pred ECCHHHHHHhCCEEEEEECCEEEEeCCc
Confidence 99998876544 899999998776654
No 55
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.59 E-value=8.5e-17 Score=176.19 Aligned_cols=177 Identities=14% Similarity=0.140 Sum_probs=104.6
Q ss_pred ccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEe-ecCCCchhhH----HH--Hhh
Q psy16304 189 LSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLY-DLGGSEDFRT----IW--KQY 261 (537)
Q Consensus 189 ~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~-D~~G~~~~r~----~~--~~~ 261 (537)
++ .+.+|+++||+|+||||||||+++|+|. +.|+.| ++. .. .. ... ...|.. ... .. ...
T Consensus 41 vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl----~~p~~G----~~~-~~-~~-~~~~~~~g~~-~~~~~~~~~~~~~~ 107 (538)
T 1yqt_A 41 LP-VVKEGMVVGIVGPNGTGKSTAVKILAGQ----LIPNLC----GDN-DS-WD-GVIRAFRGNE-LQNYFEKLKNGEIR 107 (538)
T ss_dssp CC-CCCTTSEEEEECCTTSSHHHHHHHHHTS----SCCCTT----TTC-CS-HH-HHHHHTTTST-HHHHHHHHHTTSCC
T ss_pred cC-cCCCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCC----ccC-cc-hh-hhHHhhCCcc-HHHHHHHHHHHhhh
Confidence 45 5779999999999999999999999999 899999 310 00 00 000 011111 100 00 012
Q ss_pred hhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecc
Q psy16304 262 LGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPT 341 (537)
Q Consensus 262 i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~t 341 (537)
+++++|.....+.... ..+.+.+... ....+....+..+|+.... ...+.+|||||+||+
T Consensus 108 ~~~~~q~~~~~~~~~~-------------~~v~e~~~~~---~~~~~~~~~l~~lgl~~~~-~~~~~~LSgGekQRv--- 167 (538)
T 1yqt_A 108 PVVKPQYVDLIPKAVK-------------GKVIELLKKA---DETGKLEEVVKALELENVL-EREIQHLSGGELQRV--- 167 (538)
T ss_dssp CEEECSCGGGSGGGCC-------------SBHHHHHHHH---CSSSCHHHHHHHTTCTTTT-TSBGGGCCHHHHHHH---
T ss_pred hhhhhhhhhhcchhhh-------------ccHHHHHhhh---hHHHHHHHHHHHcCCChhh-hCChhhCCHHHHHHH---
Confidence 3444444321111000 0011111000 0111223345567876654 555999999999999
Q ss_pred cccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcC
Q psy16304 342 VGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSC 404 (537)
Q Consensus 342 i~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~ 404 (537)
++|++++. + |++++|| |++++.. ..+++.+.+ .+.+++++ +||+.....++ ++++++
T Consensus 168 -~iAraL~~-~--P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvi~v-sHd~~~~~~~~dri~vl~~ 233 (538)
T 1yqt_A 168 -AIAAALLR-N--ATFYFFDEPSSYLDIRQRLNAARAIRRLSE-EGKSVLVV-EHDLAVLDYLSDIIHVVYG 233 (538)
T ss_dssp -HHHHHHHS-C--CSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEE-CSCHHHHHHHCSEEEEEEE
T ss_pred -HHHHHHhc-C--CCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEE-eCCHHHHHHhCCEEEEEcC
Confidence 99999996 5 8999999 9999432 333355544 35677777 89998887654 666654
No 56
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.55 E-value=3.4e-16 Score=171.20 Aligned_cols=83 Identities=11% Similarity=0.062 Sum_probs=59.5
Q ss_pred cEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhH-----HHHHHHHHhcCCEEEE
Q psy16304 312 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDF-----RTIWKQYLGTVSQTLL 384 (537)
Q Consensus 312 ~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~-----~~l~~~~~~~~~~vIl 384 (537)
.+..+|+.... ...+.+|||||+||+ ++|++++. + |++++|| |++++.. ..+++.+. . +.+++
T Consensus 122 ~l~~l~l~~~~-~~~~~~LSgGe~Qrv----~iA~aL~~-~--p~illlDEPts~LD~~~~~~l~~~l~~l~-~-g~tii 191 (538)
T 3ozx_A 122 VKELLNMTNLW-NKDANILSGGGLQRL----LVAASLLR-E--ADVYIFDQPSSYLDVRERMNMAKAIRELL-K-NKYVI 191 (538)
T ss_dssp HHHHTTCGGGT-TSBGGGCCHHHHHHH----HHHHHHHS-C--CSEEEEESTTTTCCHHHHHHHHHHHHHHC-T-TSEEE
T ss_pred HHHHcCCchhh-cCChhhCCHHHHHHH----HHHHHHHc-C--CCEEEEECCcccCCHHHHHHHHHHHHHHh-C-CCEEE
Confidence 34466776554 455899999999999 99999996 5 8999999 9999433 22234442 3 46777
Q ss_pred EEeCCCcchhhhhh--hhhhcCC
Q psy16304 385 VSHSLSGRPDDRCQ--VYLMSCN 405 (537)
Q Consensus 385 Vvdshd~~~~~~~~--i~ll~~G 405 (537)
++ +||+.....++ ++++++|
T Consensus 192 ~v-sHdl~~~~~~~d~i~vl~~~ 213 (538)
T 3ozx_A 192 VV-DHDLIVLDYLTDLIHIIYGE 213 (538)
T ss_dssp EE-CSCHHHHHHHCSEEEEEEEE
T ss_pred EE-EeChHHHHhhCCEEEEecCC
Confidence 77 89998877655 6666543
No 57
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.55 E-value=9.6e-15 Score=155.95 Aligned_cols=209 Identities=21% Similarity=0.307 Sum_probs=122.8
Q ss_pred CeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEEC---CcEEEEEeecCCCc--------hhhHHHHhhhhcc
Q psy16304 197 VPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYG---NKYEVFLYDLGGSE--------DFRTIWKQYLGTV 265 (537)
Q Consensus 197 ~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~---g~~~i~~~D~~G~~--------~~r~~~~~~i~~v 265 (537)
.+|+|||++|+|||||++.|+|..++.+.++.|+|++..... ++..+.+||++|+. .++..+...+..
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~- 82 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE- 82 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHH-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHh-
Confidence 479999999999999999999987777788899887654422 24789999999985 344444444444
Q ss_pred ccCCCCCCCccceeeEEee-cCccc-----------------------c------cCCcccccc-cCc------------
Q psy16304 266 SQTPLGRPDSRTCQVYLIM-CGVHQ-----------------------V------SGIPDELTS-ATH------------ 302 (537)
Q Consensus 266 ~Q~~~l~~~~~~~il~v~D-s~~~~-----------------------~------~~l~~~l~~-~~~------------ 302 (537)
++++++++| .+... . ....+.... +..
T Consensus 83 ----------ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~~~~~~~~~~lg~~~~~~iSA~~g~gv 152 (436)
T 2hjg_A 83 ----------ADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLGL 152 (436)
T ss_dssp ----------CSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC-----CCCSSGGGSSCCCEECBTTTTBTH
T ss_pred ----------CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccchhhHHHHHHcCCCCeEEEeCcCCCCh
Confidence 777777877 22100 0 000000000 000
Q ss_pred ----------CCc-----cccCCccEEEeccCccCccchhhhhcCCCceeeecccccccc----eeccCCceEEEEEecC
Q psy16304 303 ----------LPL-----VDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA----RVEYGNKYEVFLYDLG 363 (537)
Q Consensus 303 ----------l~~-----~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~a----ll~~~e~p~lllLDT~ 363 (537)
+.. .......+.++|.+++||+++++.|.++++..+++..++++. .+..++ ..+.+|||+
T Consensus 153 ~~L~~~i~~~l~~~~~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~-~~~~l~DT~ 231 (436)
T 2hjg_A 153 GDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ-QEFVIVDTA 231 (436)
T ss_dssp HHHHHHHHHTGGGCCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETT-EEEEETTHH
T ss_pred HHHHHHHHHhcCccccccccccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECC-eEEEEEECC
Confidence 000 000124677999999999999999999987766655554443 233344 689999999
Q ss_pred ch----------hhHHHHHH-HHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEeccc-chh
Q psy16304 364 GS----------EDFRTIWK-QYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAK-NLS 417 (537)
Q Consensus 364 Gl----------~~~~~l~~-~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nk-dl~ 417 (537)
|+ +.+..++. .+++.++++++|+|..+..+..... ..+.+.|..+....|| |+.
T Consensus 232 G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl~ 299 (436)
T 2hjg_A 232 GMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAV 299 (436)
T ss_dssp HHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGS
T ss_pred CcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCcEEEEEECccCC
Confidence 98 55555543 5677889999999998877665544 3344578888888888 774
No 58
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.52 E-value=4.2e-14 Score=151.82 Aligned_cols=210 Identities=21% Similarity=0.323 Sum_probs=128.5
Q ss_pred CCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEEC---CcEEEEEeecCC--------CchhhHHHHhhhhc
Q psy16304 196 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYG---NKYEVFLYDLGG--------SEDFRTIWKQYLGT 264 (537)
Q Consensus 196 G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~---g~~~i~~~D~~G--------~~~~r~~~~~~i~~ 264 (537)
-.+|+|||++|||||||++.|+|..++...++.|+|++..... ++..+.+||++| ++.++..+...+..
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ 102 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 102 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhh
Confidence 4689999999999999999999987666778889877654432 247899999999 44555555555554
Q ss_pred cccCCCCCCCccceeeEEee-cCcc-c----------------------c------cCCcccc-----------------
Q psy16304 265 VSQTPLGRPDSRTCQVYLIM-CGVH-Q----------------------V------SGIPDEL----------------- 297 (537)
Q Consensus 265 v~Q~~~l~~~~~~~il~v~D-s~~~-~----------------------~------~~l~~~l----------------- 297 (537)
++++++++| .... . . ....+.+
T Consensus 103 -----------ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~~~~~~~e~~~lg~~~~~~iSA~~g~g 171 (456)
T 4dcu_A 103 -----------ADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLG 171 (456)
T ss_dssp -----------CSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC---------CCSGGGSSSSEEECCTTTCTT
T ss_pred -----------CCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchhhhhhHHHHHHcCCCceEEeecccccc
Confidence 777777777 2110 0 0 0000000
Q ss_pred -----ccc-CcCC-----ccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccc----eeccCCceEEEEEec
Q psy16304 298 -----TSA-THLP-----LVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA----RVEYGNKYEVFLYDL 362 (537)
Q Consensus 298 -----~~~-~~l~-----~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~a----ll~~~e~p~lllLDT 362 (537)
..+ ..+. ........+.++|.+++||+++++.|.+..+..+.+..++++. .+..++ ..+.+|||
T Consensus 172 v~~L~~~i~~~l~~~~~~~~~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~~l~DT 250 (456)
T 4dcu_A 172 LGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ-QEFVIVDT 250 (456)
T ss_dssp HHHHHHHHHTTGGGSCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETT-EEEEETTG
T ss_pred hHHHHHHHHhhcccccccccccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECC-ceEEEEEC
Confidence 000 0000 0001224567999999999999999998887766665555443 333355 78999999
Q ss_pred Cc----------hhhHHHHHH-HHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEeccc-chh
Q psy16304 363 GG----------SEDFRTIWK-QYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAK-NLS 417 (537)
Q Consensus 363 ~G----------l~~~~~l~~-~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nk-dl~ 417 (537)
+| ++.+..++. .+++.++++++|+|..+........ .++.+.|+++....|| |+.
T Consensus 251 ~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~ 319 (456)
T 4dcu_A 251 AGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAV 319 (456)
T ss_dssp GGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGS
T ss_pred CCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcC
Confidence 99 566666654 4778899999999888754433333 3445678888888888 774
No 59
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.51 E-value=4.9e-16 Score=174.59 Aligned_cols=97 Identities=10% Similarity=0.096 Sum_probs=70.6
Q ss_pred EeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchh-----hHHHHHHHHHhcCCEEEEEEe
Q psy16304 315 VLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSE-----DFRTIWKQYLGTVSQTLLVSH 387 (537)
Q Consensus 315 llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~-----~~~~l~~~~~~~~~~vIlVvd 387 (537)
.+|+........+.+|||||+||+ ++|++++..+++|++++|| |+|++ .+..+++.+.+. +.+++++
T Consensus 529 ~~~l~~~~~~~~~~~LSgG~~qrv----~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~-g~tvi~v- 602 (670)
T 3ux8_A 529 DVGLGYMKLGQPATTLSGGEAQRV----KLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN-GDTVLVI- 602 (670)
T ss_dssp HTTCTTSBTTCCGGGCCHHHHHHH----HHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEE-
T ss_pred HcCCchhhccCCchhCCHHHHHHH----HHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEE-
Confidence 455543333456899999999999 9999998732126899999 99993 223333444433 5677777
Q ss_pred CCCcchhhhhh-hhhh------cCCcEEEEecccchh
Q psy16304 388 SLSGRPDDRCQ-VYLM------SCNCQVYLISAKNLS 417 (537)
Q Consensus 388 shd~~~~~~~~-i~ll------~~G~ii~~g~nkdl~ 417 (537)
+||+.....++ +++| ++|+++..|++.++.
T Consensus 603 tHd~~~~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~ 639 (670)
T 3ux8_A 603 EHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVA 639 (670)
T ss_dssp CCCHHHHTTCSEEEEEESSSGGGCCEEEEEECHHHHH
T ss_pred eCCHHHHHhCCEEEEecCCcCCCCCEEEEecCHHHHH
Confidence 89988776555 8888 899999999998874
No 60
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.50 E-value=8.6e-16 Score=170.10 Aligned_cols=86 Identities=14% Similarity=0.142 Sum_probs=61.8
Q ss_pred ccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchhhHH--HH---HHHHHhcCCEEE
Q psy16304 311 VPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSEDFR--TI---WKQYLGTVSQTL 383 (537)
Q Consensus 311 ~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~~~~--~l---~~~~~~~~~~vI 383 (537)
..+..+|+.... ...+.+|||||+||+ ++|++++. + |++++|| |++++... .+ ++.+.+. +.++
T Consensus 204 ~~l~~~gl~~~~-~~~~~~LSgGe~Qrv----~iAraL~~-~--p~llllDEPts~LD~~~~~~l~~~l~~l~~~-g~tv 274 (608)
T 3j16_B 204 RYIKILQLENVL-KRDIEKLSGGELQRF----AIGMSCVQ-E--ADVYMFDEPSSYLDVKQRLNAAQIIRSLLAP-TKYV 274 (608)
T ss_dssp HHHHHHTCTGGG-GSCTTTCCHHHHHHH----HHHHHHHS-C--CSEEEEECTTTTCCHHHHHHHHHHHHGGGTT-TCEE
T ss_pred HHHHHcCCcchh-CCChHHCCHHHHHHH----HHHHHHHh-C--CCEEEEECcccCCCHHHHHHHHHHHHHHHhC-CCEE
Confidence 345567877654 455899999999999 99999996 5 8999999 99994332 22 2333333 4567
Q ss_pred EEEeCCCcchhhhhh--hhhhcCCc
Q psy16304 384 LVSHSLSGRPDDRCQ--VYLMSCNC 406 (537)
Q Consensus 384 lVvdshd~~~~~~~~--i~ll~~G~ 406 (537)
+++ +|++......+ +++++.+.
T Consensus 275 i~v-tHdl~~~~~~~drv~vl~~~~ 298 (608)
T 3j16_B 275 ICV-EHDLSVLDYLSDFVCIIYGVP 298 (608)
T ss_dssp EEE-CSCHHHHHHHCSEEEEEESCT
T ss_pred EEE-eCCHHHHHHhCCEEEEEeCCc
Confidence 777 89998887654 77776654
No 61
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.49 E-value=1.9e-15 Score=173.82 Aligned_cols=176 Identities=16% Similarity=0.122 Sum_probs=109.2
Q ss_pred ccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhc
Q psy16304 185 LPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGT 264 (537)
Q Consensus 185 ~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~ 264 (537)
+-.+++|.+.+|++++|+|+||||||||+++|+|.. + .| . +.. .. ..+++
T Consensus 450 iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~---i---~g-----------~-----~~~--~~------~~~~~ 499 (986)
T 2iw3_A 450 LLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQ---V---DG-----------F-----PTQ--EE------CRTVY 499 (986)
T ss_dssp EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTC---S---TT-----------C-----CCT--TT------SCEEE
T ss_pred eEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---c---CC-----------C-----ccc--cc------eeEEE
Confidence 345677889999999999999999999999999641 1 12 0 000 00 11345
Q ss_pred cccCC-CCCCCccceeeEEeecCcccccCCcccccc-cCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccc
Q psy16304 265 VSQTP-LGRPDSRTCQVYLIMCGVHQVSGIPDELTS-ATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTV 342 (537)
Q Consensus 265 v~Q~~-~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~-~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti 342 (537)
++|+. .++...+. .+.+.. .... ..+....+..+|+........+.+|||||+||+
T Consensus 500 v~q~~~~~~~~ltv----------------~e~l~~~~~~~--~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRv---- 557 (986)
T 2iw3_A 500 VEHDIDGTHSDTSV----------------LDFVFESGVGT--KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKL---- 557 (986)
T ss_dssp TTCCCCCCCTTSBH----------------HHHHHTTCSSC--HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHH----
T ss_pred EcccccccccCCcH----------------HHHHHHhhcCH--HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHH----
Confidence 55543 21211111 000000 0000 111223344567642223455899999999999
Q ss_pred ccccceeccCCceEEEEEe--cCchhhHHHHH-HHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEE-Eecccch
Q psy16304 343 GFNRARVEYGNKYEVFLYD--LGGSEDFRTIW-KQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVY-LISAKNL 416 (537)
Q Consensus 343 ~la~all~~~e~p~lllLD--T~Gl~~~~~l~-~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~-~g~nkdl 416 (537)
+++++++. + |++++|| |+|++.....| .++++..+.+++++ +||+.+....+ ++++++|+++. .|...++
T Consensus 558 aLArAL~~-~--P~lLLLDEPTs~LD~~~~~~l~~~L~~~g~tvIiv-SHdl~~l~~~adrii~L~~G~iv~~~G~~~e~ 633 (986)
T 2iw3_A 558 ALARAVLR-N--ADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITI-SHDSVFLDNVCEYIINYEGLKLRKYKGNFTEF 633 (986)
T ss_dssp HHHHHHHT-T--CSEEEEESTTTTCCHHHHHHHHHHHHHSCSEEEEE-CSCHHHHHHHCSEEEEEETTEEEEEESCHHHH
T ss_pred HHHHHHhc-C--CCEEEEECCccCCCHHHHHHHHHHHHhCCCEEEEE-ECCHHHHHHhCCEEEEEECCeeecCCCCHHHH
Confidence 99999996 5 8999999 99995443333 44444345677777 99998887654 88899999874 4544454
No 62
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.47 E-value=3.2e-15 Score=160.49 Aligned_cols=182 Identities=13% Similarity=0.090 Sum_probs=109.3
Q ss_pred cccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEE-EEECCcEEEEEeecCCCchhhHHHHhhhhccccC
Q psy16304 190 SLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRAR-VEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQT 268 (537)
Q Consensus 190 ~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~-i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~ 268 (537)
++.+.+|++++|+||||||||||+++|+|. ..|+.|+ + +.+++ | .+ +.+++++|+
T Consensus 132 sl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl----~~p~~G~---~pI~vdg-------~------~~----~~i~~vpq~ 187 (460)
T 2npi_A 132 RMSNFEGPRVVIVGGSQTGKTSLSRTLCSY----ALKFNAY---QPLYINL-------D------PQ----QPIFTVPGC 187 (460)
T ss_dssp HHHSSSCCCEEEEESTTSSHHHHHHHHHHT----THHHHCC---CCEEEEC-------C------TT----SCSSSCSSC
T ss_pred ceEeCCCCEEEEECCCCCCHHHHHHHHhCc----ccccCCc---eeEEEcC-------C------cc----CCeeeeccc
Confidence 455679999999999999999999999999 8888881 1 44333 1 12 568899998
Q ss_pred CCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccc-
Q psy16304 269 PLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA- 347 (537)
Q Consensus 269 ~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~a- 347 (537)
..++..... .+ . .+++ .............+....+..+|+....+ ..+|||||+||+ +++++
T Consensus 188 ~~l~~~~~~-----~t-v---~eni-~~~~~~~~~~~~~~~~~ll~~~gl~~~~~---~~~LSgGq~qrl----alAra~ 250 (460)
T 2npi_A 188 ISATPISDI-----LD-A---QLPT-WGQSLTSGATLLHNKQPMVKNFGLERINE---NKDLYLECISQL----GQVVGQ 250 (460)
T ss_dssp CEEEECCSC-----CC-T---TCTT-CSCBCBSSCCSSCCBCCEECCCCSSSGGG---CHHHHHHHHHHH----HHHHHH
T ss_pred hhhcccccc-----cc-h---hhhh-cccccccCcchHHHHHHHHHHhCCCcccc---hhhhhHHHHHHH----HHHHHH
Confidence 653211000 00 0 0011 00000000001122334455778765532 789999999999 99999
Q ss_pred -eeccCCceEE----EEEec---CchhhHHHHHHHHHhc-CCEEEEEEeCCC--cc--hhh--hhh-----hhhhc-CCc
Q psy16304 348 -RVEYGNKYEV----FLYDL---GGSEDFRTIWKQYLGT-VSQTLLVSHSLS--GR--PDD--RCQ-----VYLMS-CNC 406 (537)
Q Consensus 348 -ll~~~e~p~l----llLDT---~Gl~~~~~l~~~~~~~-~~~vIlVvdshd--~~--~~~--~~~-----i~ll~-~G~ 406 (537)
++. + |++ ++||. ++++.....+..+.+. ..++++|+|+++ .. ... +.+ +++++ +|+
T Consensus 251 rL~~-~--p~i~~sGLlLDEpPts~LD~~~~~l~~l~~~~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~ 327 (460)
T 2npi_A 251 RLHL-D--PQVRRSGCIVDTPSISQLDENLAELHHIIEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDG 327 (460)
T ss_dssp HHHH-C--HHHHHSCEEEECCCGGGSCSSCHHHHHHHHHTTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTT
T ss_pred Hhcc-C--cccCcceEEEeCCcccccChhHHHHHHHHHHhCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCc
Confidence 886 5 899 99994 6663323334444433 345666665555 21 222 233 67788 899
Q ss_pred EEEEecccch
Q psy16304 407 QVYLISAKNL 416 (537)
Q Consensus 407 ii~~g~nkdl 416 (537)
++ .+.+.++
T Consensus 328 iv-~g~~~~~ 336 (460)
T 2npi_A 328 VS-AVDDVYK 336 (460)
T ss_dssp CC-CCCHHHH
T ss_pred EE-ECCHHHH
Confidence 87 6665544
No 63
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.42 E-value=1.2e-12 Score=139.75 Aligned_cols=207 Identities=15% Similarity=0.191 Sum_probs=119.1
Q ss_pred eEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeE----EEEECCcEEEEEeecCCCchh---------hHHHHhhhhc
Q psy16304 198 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA----RVEYGNKYEVFLYDLGGSEDF---------RTIWKQYLGT 264 (537)
Q Consensus 198 ~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~----~i~i~g~~~i~~~D~~G~~~~---------r~~~~~~i~~ 264 (537)
+|+|||.+|+|||||+|.|+|.+.+...++.|+|++ .+.++| ..+.+|||+|+... +..+..++..
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~-~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG-KTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE 81 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT-EEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECC-eEEEEEECCCccccccchHHHHHHHHHHHHHHh
Confidence 689999999999999999999876666777776653 566665 88999999997631 2223333333
Q ss_pred cccCCCCCCCccceeeEEee-cCccc-----------------------cc-------CC-ccccc-ccCcC--------
Q psy16304 265 VSQTPLGRPDSRTCQVYLIM-CGVHQ-----------------------VS-------GI-PDELT-SATHL-------- 303 (537)
Q Consensus 265 v~Q~~~l~~~~~~~il~v~D-s~~~~-----------------------~~-------~l-~~~l~-~~~~l-------- 303 (537)
++++++++| ..... .+ .. .+... .+...
T Consensus 82 -----------ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~lg~~~~~~iSA~~g 150 (439)
T 1mky_A 82 -----------ADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLREFEREVKPELYSLGFGEPIPVSAEHN 150 (439)
T ss_dssp -----------CSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHHHHHHTHHHHGGGSSCSCEECBTTTT
T ss_pred -----------CCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccccHHHHHHHHHhcCCCCEEEEeccCC
Confidence 788888888 22100 00 00 00000 00000
Q ss_pred --------------Cc---c------ccCCccEEEeccCccCccchhhhhcCCCceeeecccccccc----eeccCCceE
Q psy16304 304 --------------PL---V------DFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA----RVEYGNKYE 356 (537)
Q Consensus 304 --------------~~---~------~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~a----ll~~~e~p~ 356 (537)
.. . ......+.++|.+++||+++++.|.|..+..+++..++++. .+..++ .+
T Consensus 151 ~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g-~~ 229 (439)
T 1mky_A 151 INLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDG-RK 229 (439)
T ss_dssp BSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETT-EE
T ss_pred CCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECC-EE
Confidence 00 0 00113577999999999999999999987777666555443 233355 68
Q ss_pred EEEEecCchhhHHHHH------------HHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEeccc-chh
Q psy16304 357 VFLYDLGGSEDFRTIW------------KQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAK-NLS 417 (537)
Q Consensus 357 lllLDT~Gl~~~~~l~------------~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nk-dl~ 417 (537)
+.+|||+|+....... ..+++.++.+++++|.++..+..... ..+...|+.+....|| |+.
T Consensus 230 ~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~ilv~NK~Dl~ 305 (439)
T 1mky_A 230 YVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLV 305 (439)
T ss_dssp EEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGS
T ss_pred EEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCC
Confidence 8999999984332221 24566788999999888765444333 3344578888888888 764
No 64
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.36 E-value=2.6e-14 Score=164.19 Aligned_cols=99 Identities=10% Similarity=0.110 Sum_probs=71.6
Q ss_pred EEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchh--hHHHHH---HHHHhcCCEEEEE
Q psy16304 313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSE--DFRTIW---KQYLGTVSQTLLV 385 (537)
Q Consensus 313 L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~--~~~~l~---~~~~~~~~~vIlV 385 (537)
+..+|+........+.+|||||+||+ ++|++++..+.+|++++|| |+|++ ....++ ..+.+. +.++++
T Consensus 789 L~~vGL~~~~lgq~~~~LSGGErQRV----~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~-G~TVIv 863 (916)
T 3pih_A 789 LHDVGLGYVKLGQPATTLSGGEAQRI----KLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDR-GNTVIV 863 (916)
T ss_dssp HHHTTGGGSBTTCCSTTCCHHHHHHH----HHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEE
T ss_pred HHHcCCchhhccCCccCCCHHHHHHH----HHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc-CCEEEE
Confidence 34566654333445789999999999 9999998632127899999 99993 223333 444333 457777
Q ss_pred EeCCCcchhhhhh-hhhh------cCCcEEEEecccchh
Q psy16304 386 SHSLSGRPDDRCQ-VYLM------SCNCQVYLISAKNLS 417 (537)
Q Consensus 386 vdshd~~~~~~~~-i~ll------~~G~ii~~g~nkdl~ 417 (537)
+ +||++....++ +++| ++|+++..|++.++.
T Consensus 864 I-~HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~ 901 (916)
T 3pih_A 864 I-EHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIA 901 (916)
T ss_dssp E-CCCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHHH
T ss_pred E-eCCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHH
Confidence 7 89998877655 7778 899999999999874
No 65
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.33 E-value=8.6e-15 Score=148.92 Aligned_cols=208 Identities=9% Similarity=-0.032 Sum_probs=123.1
Q ss_pred hhHHHHHhhhcccccccccccccccCccccccccCCCCCCchhHHHHHHHHHHHHhhhcccccCCCcccCCCCCCCCCcc
Q psy16304 95 EIWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAPTFEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDDPAPT 174 (537)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~m~~~li~~~~l~k~~~~~~~~~~~~~~ 174 (537)
-..|++.++..+..++.+.++..++.++++.+....++..+... . ...+.++++.+.|+ .
T Consensus 54 q~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~-----~-----~~~i~~~~vs~~y~-~--------- 113 (305)
T 2v9p_A 54 QAKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGEGSWKS-----I-----LTFFNYQNIELITF-I--------- 113 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCSSCCTHH-----H-----HHHHHHTTCCHHHH-H---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCcccc-----c-----CCeEEEEEEEEEcC-h---------
Confidence 35899999999999999999999999998865433222222111 0 12356777777664 0
Q ss_pred hhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchh
Q psy16304 175 FENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 254 (537)
Q Consensus 175 ~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~ 254 (537)
.. ...+++.+.+|++++|+||||||||||+++|+|. + .| +|..
T Consensus 114 -~v--------L~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl----~---~G----~I~~----------------- 156 (305)
T 2v9p_A 114 -NA--------LKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHF----L---GG----SVLS----------------- 156 (305)
T ss_dssp -HH--------HHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHH----H---TC----EEEC-----------------
T ss_pred -hh--------hccceEEecCCCEEEEECCCCCcHHHHHHHHhhh----c---Cc----eEEE-----------------
Confidence 01 2234577889999999999999999999999998 6 67 4432
Q ss_pred hHHHHhhhhccccCCCCCCC-ccc-eeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcC
Q psy16304 255 RTIWKQYLGTVSQTPLGRPD-SRT-CQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILG 332 (537)
Q Consensus 255 r~~~~~~i~~v~Q~~~l~~~-~~~-~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSg 332 (537)
+++|.+.++.. ..+ .+.+..+... .+.+.+..+ ++ -|+. ...|||
T Consensus 157 ---------~v~q~~~lf~~ti~~~ni~~~~~~~~----~~~~~i~~~--L~-----------~gld-------g~~LSg 203 (305)
T 2v9p_A 157 ---------FANHKSHFWLASLADTRAALVDDATH----ACWRYFDTY--LR-----------NALD-------GYPVSI 203 (305)
T ss_dssp ---------GGGTTSGGGGGGGTTCSCEEEEEECH----HHHHHHHHT--TT-----------GGGG-------TCCEEC
T ss_pred ---------EecCccccccccHHHHhhccCccccH----HHHHHHHHH--hH-----------ccCC-------ccCcCH
Confidence 12232222211 011 2222211110 011111100 00 0111 456999
Q ss_pred CCceeeecccccccceeccCCceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEeCCCcchhhhhh-hhhhcCCcEEEEe
Q psy16304 333 EPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ-VYLMSCNCQVYLI 411 (537)
Q Consensus 333 G~rqrvs~ti~la~all~~~e~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvdshd~~~~~~~~-i~ll~~G~ii~~g 411 (537)
||+|| |++++. + |++++ |++++..... .+.. + +|+......++ + ++++|+++..|
T Consensus 204 GqkQR-------ARAll~-~--p~iLl--Ts~LD~~~~~--~i~~--------l-tH~~~~~~~aD~i-vl~~G~iv~~g 259 (305)
T 2v9p_A 204 DRKHK-------AAVQIK-A--PPLLV--TSNIDVQAED--RYLY--------L-HSRVQTFRFEQPC-TDESGEQPFNI 259 (305)
T ss_dssp CCSSC-------CCCEEC-C--CCEEE--EESSCSTTCG--GGGG--------G-TTTEEEEECCCCC-CCC---CCCCC
T ss_pred HHHHH-------HHHHhC-C--CCEEE--ECCCCHHHHH--HHHH--------H-hCCHHHHHhCCEE-EEeCCEEEEeC
Confidence 99998 788885 4 78888 8888432110 0000 1 77776665555 8 99999998888
Q ss_pred cccch
Q psy16304 412 SAKNL 416 (537)
Q Consensus 412 ~nkdl 416 (537)
++.++
T Consensus 260 ~~~el 264 (305)
T 2v9p_A 260 TDADW 264 (305)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 77666
No 66
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.27 E-value=3.7e-13 Score=153.42 Aligned_cols=98 Identities=11% Similarity=0.104 Sum_probs=70.8
Q ss_pred EEEeccCccCccchhhhhcCCCceeeecccccccceeccC-CceEEEEEe--cCchh--hHHHH---HHHHHhcCCEEEE
Q psy16304 313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYG-NKYEVFLYD--LGGSE--DFRTI---WKQYLGTVSQTLL 384 (537)
Q Consensus 313 L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~-e~p~lllLD--T~Gl~--~~~~l---~~~~~~~~~~vIl 384 (537)
+..+|+........+.+|||||+||+ .+|++++..+ + |++++|| |+|++ ....+ +..+.+. +.+|+
T Consensus 714 L~~~gL~~~~l~~~~~~LSGGekQRv----~LAraL~~~p~~-p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~-G~tVI 787 (842)
T 2vf7_A 714 LREVGLGYLRLGQPATELSGGEAQRI----KLATELRRSGRG-GTVYVLDEPTTGLHPADVERLQRQLVKLVDA-GNTVI 787 (842)
T ss_dssp HHHTTCTTSBTTCCGGGCCHHHHHHH----HHHHTTSSCCSS-CEEEEEECTTTTCCHHHHHHHHHHHHHHHHT-TCEEE
T ss_pred HHHcCCCcccccCCcccCCHHHHHHH----HHHHHHHhCCCC-CCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEE
Confidence 44567665322445899999999999 9999999732 4 7999999 99992 22233 3444333 56777
Q ss_pred EEeCCCcchhhhhh-hhhh------cCCcEEEEecccchh
Q psy16304 385 VSHSLSGRPDDRCQ-VYLM------SCNCQVYLISAKNLS 417 (537)
Q Consensus 385 Vvdshd~~~~~~~~-i~ll------~~G~ii~~g~nkdl~ 417 (537)
++ +||++....++ +++| ++|+++..+++.++.
T Consensus 788 vi-sHdl~~i~~aDrii~L~p~~g~~~G~Iv~~g~~~el~ 826 (842)
T 2vf7_A 788 AV-EHKMQVVAASDWVLDIGPGAGEDGGRLVAQGTPAEVA 826 (842)
T ss_dssp EE-CCCHHHHTTCSEEEEECSSSGGGCCSEEEEECHHHHT
T ss_pred EE-cCCHHHHHhCCEEEEECCCCCCCCCEEEEEcCHHHHH
Confidence 77 89988885544 7888 689999998888764
No 67
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.26 E-value=1e-12 Score=150.77 Aligned_cols=98 Identities=11% Similarity=0.133 Sum_probs=70.0
Q ss_pred EEEeccCccCccchhhhhcCCCceeeecccccccceeccC-CceEEEEEe--cCchh--hHHHHH---HHHHhcCCEEEE
Q psy16304 313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYG-NKYEVFLYD--LGGSE--DFRTIW---KQYLGTVSQTLL 384 (537)
Q Consensus 313 L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~-e~p~lllLD--T~Gl~--~~~~l~---~~~~~~~~~vIl 384 (537)
+..+|+........+.+|||||+||+ ++|++++..+ + |++++|| |+|++ ....++ ..+.+ .+.+|+
T Consensus 847 L~~lgL~~~~l~~~~~~LSGGekQRv----~LAraL~~~p~~-p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G~TVI 920 (993)
T 2ygr_A 847 LVDVGLGYVRLGQPAPTLSGGEAQRV----KLASELQKRSTG-RTVYILDEPTTGLHFDDIRKLLNVINGLVD-KGNTVI 920 (993)
T ss_dssp HHHTTGGGSBTTCCGGGSCHHHHHHH----HHHHHHSSCCCS-SEEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEE
T ss_pred HHHcCCCcccccCccccCCHHHHHHH----HHHHHHHhCCCC-CCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEE
Confidence 44566654223445899999999999 9999999632 3 6999999 99993 233333 34333 356777
Q ss_pred EEeCCCcchhhhhh-hhhh------cCCcEEEEecccchh
Q psy16304 385 VSHSLSGRPDDRCQ-VYLM------SCNCQVYLISAKNLS 417 (537)
Q Consensus 385 Vvdshd~~~~~~~~-i~ll------~~G~ii~~g~nkdl~ 417 (537)
++ +||+.....++ +++| ++|+++..+++.++.
T Consensus 921 vi-sHdl~~i~~aDrIivL~p~gg~~~G~Iv~~G~~~el~ 959 (993)
T 2ygr_A 921 VI-EHNLDVIKTSDWIIDLGPEGGAGGGTVVAQGTPEDVA 959 (993)
T ss_dssp EE-CCCHHHHTTCSEEEEEESSSTTSCSEEEEEECHHHHH
T ss_pred EE-cCCHHHHHhCCEEEEECCCcCCCCCEEEEecCHHHHH
Confidence 77 89988776544 7788 689999999888764
No 68
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.24 E-value=1.9e-12 Score=136.59 Aligned_cols=77 Identities=14% Similarity=0.155 Sum_probs=54.0
Q ss_pred hhhh-cCCCceeeecccccccceeccCCce--EEEEEe--cCchhhHHH--HHHHHHhc-CCEEEEEEeCCCcchhhhhh
Q psy16304 327 IKRI-LGEPIISLVPTVGFNRARVEYGNKY--EVFLYD--LGGSEDFRT--IWKQYLGT-VSQTLLVSHSLSGRPDDRCQ 398 (537)
Q Consensus 327 i~~L-SgG~rqrvs~ti~la~all~~~e~p--~lllLD--T~Gl~~~~~--l~~~~~~~-~~~vIlVvdshd~~~~~~~~ 398 (537)
+..+ ||||++|+ .++++++. + | ++++|| |+|++.... +++.+.+- .+.++|++ +|++..+..++
T Consensus 292 ~~~~lSgGe~qrl----~lA~~l~~-~--~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~i-tH~~~~~~~~d 363 (415)
T 4aby_A 292 LSDVASGGELSRV----MLAVSTVL-G--ADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVV-THLAQIAARAH 363 (415)
T ss_dssp GGGCSCHHHHHHH----HHHHHHHH-C--CSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEE-CSCHHHHTTCS
T ss_pred hhhhcCHhHHHHH----HHHHHHHh-C--CCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEE-eCcHHHHhhcC
Confidence 4455 99999999 99998875 4 7 999999 999943332 22322221 24677777 89987766544
Q ss_pred -hhhh----cCCcEEEEe
Q psy16304 399 -VYLM----SCNCQVYLI 411 (537)
Q Consensus 399 -i~ll----~~G~ii~~g 411 (537)
++++ ++|+++...
T Consensus 364 ~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 364 HHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp EEEEEEEEEETTEEEEEE
T ss_pred eEEEEEEeccCCceEEEE
Confidence 8888 788877654
No 69
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.23 E-value=5.5e-13 Score=152.57 Aligned_cols=98 Identities=10% Similarity=0.105 Sum_probs=70.7
Q ss_pred EEEeccCccCccchhhhhcCCCceeeecccccccceeccC-CceEEEEEe--cCchh--hHHHHH---HHHHhcCCEEEE
Q psy16304 313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYG-NKYEVFLYD--LGGSE--DFRTIW---KQYLGTVSQTLL 384 (537)
Q Consensus 313 L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~-e~p~lllLD--T~Gl~--~~~~l~---~~~~~~~~~vIl 384 (537)
+..+|+........+.+|||||+||+ ++|++++..+ + |++++|| |+|++ ....++ ..+.+ .+.+|+
T Consensus 829 L~~~gL~~~~l~~~~~~LSGGekQRv----~LAraL~~~p~~-p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G~TVI 902 (972)
T 2r6f_A 829 LYDVGLGYMKLGQPATTLSGGEAQRV----KLAAELHRRSNG-RTLYILDEPTTGLHVDDIARLLDVLHRLVD-NGDTVL 902 (972)
T ss_dssp HHHTTCSSSBTTCCGGGCCHHHHHHH----HHHHHHSSCCCS-CEEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEE
T ss_pred HHHcCCCcccccCchhhCCHHHHHHH----HHHHHHhcCCCC-CCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEE
Confidence 44567765223455899999999999 9999999632 3 6999999 99993 333333 34433 345777
Q ss_pred EEeCCCcchhhhhh-hhhh------cCCcEEEEecccchh
Q psy16304 385 VSHSLSGRPDDRCQ-VYLM------SCNCQVYLISAKNLS 417 (537)
Q Consensus 385 Vvdshd~~~~~~~~-i~ll------~~G~ii~~g~nkdl~ 417 (537)
++ +||++....++ +++| ++|+++..+++.++.
T Consensus 903 vi-sHdl~~i~~aDrIivL~p~gG~~~G~Iv~~g~~~el~ 941 (972)
T 2r6f_A 903 VI-EHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVA 941 (972)
T ss_dssp EE-CCCHHHHTTCSEEEEECSSSTTSCCSEEEEESHHHHH
T ss_pred EE-cCCHHHHHhCCEEEEEcCCCCCCCCEEEEecCHHHHH
Confidence 77 89988776544 7888 689999999988774
No 70
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.22 E-value=7.2e-13 Score=127.66 Aligned_cols=140 Identities=9% Similarity=-0.015 Sum_probs=74.0
Q ss_pred CCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304 194 FRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP 273 (537)
Q Consensus 194 ~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~ 273 (537)
.+|++++|+||||||||||+++|+|. .|++| +|. ...+. .+. ... +..+++++|++.
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl-----~p~~G----~I~---~~~~~-~~~---~~~----~~~ig~v~q~~~--- 76 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAMAKAVQ-----ALQSK----QVS---RIILT-RPA---VEA----GEKLGFLPGTLN--- 76 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHHHHHHH-----HHHTT----SCS---EEEEE-ECS---CCT----TCCCCSSCC------
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC-----CCcCC----eee---eEEec-CCc---hhh----hcceEEecCCHH---
Confidence 47999999999999999999999996 57888 442 11121 111 112 256899999752
Q ss_pred CccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCC
Q psy16304 274 DSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGN 353 (537)
Q Consensus 274 ~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e 353 (537)
+.+. . + .......+......... ...+.. ..||+||+ +++++++. +
T Consensus 77 ---enl~---~-----~--~~~~~~~~~~~~~~~~~--------------~~~l~~-glGq~qrv----~lAraL~~-~- 122 (208)
T 3b85_A 77 ---EKID---P-----Y--LRPLHDALRDMVEPEVI--------------PKLMEA-GIVEVAPL----AYMRGRTL-N- 122 (208)
T ss_dssp ------C---T-----T--THHHHHHHTTTSCTTHH--------------HHHHHT-TSEEEEEG----GGGTTCCB-C-
T ss_pred ---HHHH---H-----H--HHHHHHHHHHhccHHHH--------------HHHHHh-CCchHHHH----HHHHHHhc-C-
Confidence 0000 0 0 00000000000000000 111122 23999999 99999997 5
Q ss_pred ceEEEEEe--cCchhhHHHHHHHHHhc-CCEEEEEEeCCCcchhh
Q psy16304 354 KYEVFLYD--LGGSEDFRTIWKQYLGT-VSQTLLVSHSLSGRPDD 395 (537)
Q Consensus 354 ~p~lllLD--T~Gl~~~~~l~~~~~~~-~~~vIlVvdshd~~~~~ 395 (537)
|++++|| |+| ....+++.+.+. .+.+++ + +||....+
T Consensus 123 -p~lllLDEPts~--~~~~l~~~l~~l~~g~tii-v-tHd~~~~~ 162 (208)
T 3b85_A 123 -DAFVILDEAQNT--TPAQMKMFLTRLGFGSKMV-V-TGDITQVD 162 (208)
T ss_dssp -SEEEEECSGGGC--CHHHHHHHHTTBCTTCEEE-E-EEC-----
T ss_pred -CCEEEEeCCccc--cHHHHHHHHHHhcCCCEEE-E-ECCHHHHh
Confidence 8999999 777 334444433322 234555 5 77776554
No 71
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.19 E-value=5.6e-12 Score=118.39 Aligned_cols=75 Identities=7% Similarity=-0.020 Sum_probs=47.7
Q ss_pred hhhhhcCCCceeeecccccccc-----eeccCCceEEEEEe----cCchh-hHHHHHHHHHhcCCE-EEEEEe-CCCcch
Q psy16304 326 IIKRILGEPIISLVPTVGFNRA-----RVEYGNKYEVFLYD----LGGSE-DFRTIWKQYLGTVSQ-TLLVSH-SLSGRP 393 (537)
Q Consensus 326 li~~LSgG~rqrvs~ti~la~a-----ll~~~e~p~lllLD----T~Gl~-~~~~l~~~~~~~~~~-vIlVvd-shd~~~ 393 (537)
.+..|||||+|++ +++++ ++. + |+++++| |++++ .....+..+++.... +++++| +|+...
T Consensus 73 ~~~~lSgG~~qr~----~la~aa~~~~l~~-~--p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H~~h~~~~ 145 (178)
T 1ye8_A 73 YGVNVQYFEELAI----PILERAYREAKKD-R--RKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPL 145 (178)
T ss_dssp EEECHHHHHHHHH----HHHHHHHHHHHHC-T--TCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCCSHH
T ss_pred cccCcCHHHHHHH----HHHhhcccccccc-C--CCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEccCCCchH
Confidence 3667999999999 99986 664 4 8999999 46663 233334455555555 555655 577666
Q ss_pred hhhhhhhhhcCCcEEE
Q psy16304 394 DDRCQVYLMSCNCQVY 409 (537)
Q Consensus 394 ~~~~~i~ll~~G~ii~ 409 (537)
.+.++ -..+|+++.
T Consensus 146 ~~~i~--~r~~~~i~~ 159 (178)
T 1ye8_A 146 VKEIR--RLPGAVLIE 159 (178)
T ss_dssp HHHHH--TCTTCEEEE
T ss_pred HHHHH--hcCCcEEEE
Confidence 55433 123456554
No 72
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.18 E-value=5.5e-12 Score=126.23 Aligned_cols=148 Identities=10% Similarity=0.016 Sum_probs=75.1
Q ss_pred CeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCcc
Q psy16304 197 VPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSR 276 (537)
Q Consensus 197 ~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~ 276 (537)
..++|+|+||||||||+|+|+|. ..|+.| ++.++| ..+ +.. .. ...+++++|+..++..
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~----~~~~~G----~i~~~g-~~i-----~~~-~~----~~~i~~v~q~~~~~~~-- 61 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKS----QVSRKA----SSWNRE-EKI-----PKT-VE----IKAIGHVIEEGGVKMK-- 61 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHH----HC-----------------C-----CCC-CS----CCEEEESCC----CCE--
T ss_pred eEEEEECCCCCCHHHHHHHHhCC----CCCCCC----ccccCC-ccc-----Ccc-ee----eeeeEEEeecCCCcCC--
Confidence 36899999999999999999999 899999 777765 222 111 11 2568899998764432
Q ss_pred ceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceE
Q psy16304 277 TCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYE 356 (537)
Q Consensus 277 ~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~ 356 (537)
+.+.|.-. ....... ......+..+.... -...+..+||||++||+ +++++++ .
T Consensus 62 ---ltv~d~~~-----------~g~~~~~-~~~~~~i~~~~~~~-~~~~~~~~LS~G~~qrv----~iaRal~------~ 115 (270)
T 3sop_A 62 ---LTVIDTPG-----------FGDQINN-ENCWEPIEKYINEQ-YEKFLKEEVNIARKKRI----PDTRVHC------C 115 (270)
T ss_dssp ---EEEECCCC-------------CCSBC-TTCSHHHHHHHHHH-HHHHHHHHSCTTCCSSC----CCCSCCE------E
T ss_pred ---ceEEechh-----------hhhhccc-HHHHHHHHHHHHHH-HHhhhHHhcCcccchhh----hhheeee------e
Confidence 22333100 0000000 00000111111111 13455789999999999 8888755 4
Q ss_pred EEEEe--cCchhhHH-HHHHHHHhcCCEEEEEEeCCCcc
Q psy16304 357 VFLYD--LGGSEDFR-TIWKQYLGTVSQTLLVSHSLSGR 392 (537)
Q Consensus 357 lllLD--T~Gl~~~~-~l~~~~~~~~~~vIlVvdshd~~ 392 (537)
++++| +.|+.... .+++.+.+. ..+++|++-.|..
T Consensus 116 lllldep~~gL~~lD~~~l~~L~~~-~~vI~Vi~K~D~l 153 (270)
T 3sop_A 116 LYFISPTGHSLRPLDLEFMKHLSKV-VNIIPVIAKADTM 153 (270)
T ss_dssp EEEECCCSSSCCHHHHHHHHHHHTT-SEEEEEETTGGGS
T ss_pred eEEEecCCCcCCHHHHHHHHHHHhc-CcEEEEEeccccC
Confidence 88889 56774333 334555444 5666666444443
No 73
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.18 E-value=9.9e-12 Score=126.38 Aligned_cols=152 Identities=13% Similarity=0.177 Sum_probs=92.1
Q ss_pred ccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCc---hhhHHH--Hhhhh
Q psy16304 189 LSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSE---DFRTIW--KQYLG 263 (537)
Q Consensus 189 ~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~---~~r~~~--~~~i~ 263 (537)
+++.+.+|++++|+|+||||||||+++|+|. +.|+.| +|.+.+ .|+.... ..+ .| +..++
T Consensus 93 l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~----l~~~~g----~V~l~g------~d~~r~~a~~ql~-~~~~~~~i~ 157 (302)
T 3b9q_A 93 LQLGFRKPAVIMIVGVNGGGKTTSLGKLAHR----LKNEGT----KVLMAA------GDTFRAAASDQLE-IWAERTGCE 157 (302)
T ss_dssp CCCCSSSCEEEEEECCTTSCHHHHHHHHHHH----HHHTTC----CEEEEC------CCCSCHHHHHHHH-HHHHHHTCE
T ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHHH----HHHcCC----eEEEEe------ecccchhHHHHHH-HHHHhcCce
Confidence 4566778999999999999999999999999 889989 666544 3332111 111 12 24578
Q ss_pred ccccCCC-CCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccc
Q psy16304 264 TVSQTPL-GRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTV 342 (537)
Q Consensus 264 ~v~Q~~~-l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti 342 (537)
+++|++. +++..+. .+.+.... .. ......+..+|+.+.. ..++.+|| +|++
T Consensus 158 ~v~q~~~~~~~~~~v----------------~e~l~~~~-~~--~~d~~lldt~gl~~~~-~~~~~eLS---kqr~---- 210 (302)
T 3b9q_A 158 IVVAEGDKAKAATVL----------------SKAVKRGK-EE--GYDVVLCDTSGRLHTN-YSLMEELI---ACKK---- 210 (302)
T ss_dssp EECCC--CCCHHHHH----------------HHHHHHHH-HT--TCSEEEECCCCCSSCC-HHHHHHHH---HHHH----
T ss_pred EEEecCCccCHHHHH----------------HHHHHHHH-Hc--CCcchHHhcCCCCcch-hHHHHHHH---HHHH----
Confidence 8888754 3321111 11111000 00 0011223356765543 56688999 7888
Q ss_pred ccccceeccCCceE--EEEEe-cCchhhHHHHHHHHHhcCC-EEEEEE
Q psy16304 343 GFNRARVEYGNKYE--VFLYD-LGGSEDFRTIWKQYLGTVS-QTLLVS 386 (537)
Q Consensus 343 ~la~all~~~e~p~--lllLD-T~Gl~~~~~l~~~~~~~~~-~vIlVv 386 (537)
+++++++. + |+ ++++| |+|++..... +.+.+..+ +.++++
T Consensus 211 ~iaral~~-~--P~e~lLvLDptsglD~~~~~-~~~~~~~g~t~iiiT 254 (302)
T 3b9q_A 211 AVGKIVSG-A--PNEILLVLDGNTGLNMLPQA-REFNEVVGITGLILT 254 (302)
T ss_dssp HHHTTSTT-C--CSEEEEEEEGGGGGGGHHHH-HHHHHHTCCCEEEEE
T ss_pred HHHHhhcc-C--CCeeEEEEeCCCCcCHHHHH-HHHHHhcCCCEEEEe
Confidence 88999886 4 67 99999 8888766543 45544434 444444
No 74
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.15 E-value=8.9e-11 Score=109.22 Aligned_cols=89 Identities=31% Similarity=0.645 Sum_probs=75.6
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCC
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPD 274 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~ 274 (537)
+..+++++|++|||||||++.+.+..+..+.||.|++...+.+++ ..+.+||++|++.++..+..++..
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~~~-~~l~i~Dt~G~~~~~~~~~~~~~~---------- 83 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQG-FKLNVWDIGGQRKIRPYWRSYFEN---------- 83 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETT-EEEEEEECSSCGGGHHHHHHHHTT----------
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEEECC-EEEEEEECCCCHHHHHHHHHHhCC----------
Confidence 567899999999999999999999877778899999888898885 999999999999888877777766
Q ss_pred ccceeeEEee-cCcccccCCcc
Q psy16304 275 SRTCQVYLIM-CGVHQVSGIPD 295 (537)
Q Consensus 275 ~~~~il~v~D-s~~~~~~~l~~ 295 (537)
++++++++| ++...+..+..
T Consensus 84 -~~~~i~v~d~~~~~s~~~~~~ 104 (181)
T 1fzq_A 84 -TDILIYVIDSADRKRFEETGQ 104 (181)
T ss_dssp -CSEEEEEEETTCGGGHHHHHH
T ss_pred -CCEEEEEEECcCHHHHHHHHH
Confidence 899999999 66555544433
No 75
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.12 E-value=3.7e-11 Score=124.86 Aligned_cols=153 Identities=13% Similarity=0.160 Sum_probs=94.3
Q ss_pred cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCc---hhhHHH--Hhhh
Q psy16304 188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSE---DFRTIW--KQYL 262 (537)
Q Consensus 188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~---~~r~~~--~~~i 262 (537)
.+++.+.+|++++|+|+||||||||++.|+|. +.|+.| +|.+.+ .|+.... ... .| +..+
T Consensus 149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~----l~~~~G----~V~l~g------~D~~r~~a~eql~-~~~~r~~i 213 (359)
T 2og2_A 149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHR----LKNEGT----KVLMAA------GDTFRAAASDQLE-IWAERTGC 213 (359)
T ss_dssp SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHH----HHHTTC----CEEEEC------CCCSCHHHHHHHH-HHHHHHTC
T ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHhh----ccccCC----EEEEec------ccccccchhHHHH-HHHHhcCe
Confidence 35566789999999999999999999999999 889888 665544 3332111 111 12 2457
Q ss_pred hccccCCC-CCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecc
Q psy16304 263 GTVSQTPL-GRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPT 341 (537)
Q Consensus 263 ~~v~Q~~~-l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~t 341 (537)
++++|+.. ..+..+. .+.+.... .. ......+..+|+.+. ...++.+|| +|++
T Consensus 214 ~~v~q~~~~~~p~~tv----------------~e~l~~~~-~~--~~d~~lldt~Gl~~~-~~~~~~eLS---kqr~--- 267 (359)
T 2og2_A 214 EIVVAEGDKAKAATVL----------------SKAVKRGK-EE--GYDVVLCDTSGRLHT-NYSLMEELI---ACKK--- 267 (359)
T ss_dssp EEECCSSSSCCHHHHH----------------HHHHHHHH-HT--TCSEEEEECCCCSSC-CHHHHHHHH---HHHH---
T ss_pred EEEEecccccChhhhH----------------HHHHHHHH-hC--CCHHHHHHhcCCChh-hhhHHHHHH---HHHH---
Confidence 88888754 3321111 11111000 00 001123446777654 356689999 7888
Q ss_pred cccccceeccCCceE--EEEEe-cCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304 342 VGFNRARVEYGNKYE--VFLYD-LGGSEDFRTIWKQYLGTVSQTLLVS 386 (537)
Q Consensus 342 i~la~all~~~e~p~--lllLD-T~Gl~~~~~l~~~~~~~~~~vIlVv 386 (537)
.+++++.. + |+ ++++| |+|++..... +.+.+..+.+++++
T Consensus 268 -~iaral~~-~--P~e~lLvLDpttglD~~~~~-~~~~~~~g~t~iii 310 (359)
T 2og2_A 268 -AVGKIVSG-A--PNEILLVLDGNTGLNMLPQA-REFNEVVGITGLIL 310 (359)
T ss_dssp -HHHHHSTT-C--CSEEEEEEEGGGGGGGHHHH-HHHHHHTCCCEEEE
T ss_pred -HHHHHHhc-C--CCceEEEEcCCCCCCHHHHH-HHHHHhcCCeEEEE
Confidence 88999886 4 67 99999 8888766543 44544434444444
No 76
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.09 E-value=6.8e-11 Score=111.19 Aligned_cols=149 Identities=15% Similarity=0.243 Sum_probs=86.1
Q ss_pred CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee--eeeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304 197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR 272 (537)
Q Consensus 197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G--~t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~ 272 (537)
.+++|+|+||||||||+++|+|..+ ..+.||.| +....+.++| .+.+.+||++|+++++..+..++..
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~-------- 101 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRG-------- 101 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTT--------
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhc--------
Confidence 5799999999999999999999865 34556666 3344778876 3456679999987665444443332
Q ss_pred CCccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccccccceecc
Q psy16304 273 PDSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEY 351 (537)
Q Consensus 273 ~~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~ 351 (537)
++.+++++| ++...++++..++..+.. .......+..++ .|..+ ........ ..+++++.
T Consensus 102 ---~~~~i~v~d~~~~~s~~~~~~~~~~~~~---~~~~~~~i~~v~----nK~Dl----~~~~~~~~----~~a~~l~~- 162 (191)
T 1oix_A 102 ---AVGALLVYDIAKHLTYENVERWLKELRD---HADSNIVIMLVG----NKSDL----RHLRAVPT----DEARAFAE- 162 (191)
T ss_dssp ---CCEEEEEEETTCHHHHHTHHHHHHHHHH---HSCTTCEEEEEE----ECGGG----GGGCCSCH----HHHHHHHH-
T ss_pred ---CCEEEEEEECcCHHHHHHHHHHHHHHHH---hcCCCCcEEEEE----ECccc----ccccccCH----HHHHHHHH-
Confidence 567788999 554444443333222111 111223344332 12221 11111122 44566664
Q ss_pred CCceEEEEEecCch--hhHHHHHHH
Q psy16304 352 GNKYEVFLYDLGGS--EDFRTIWKQ 374 (537)
Q Consensus 352 ~e~p~lllLDT~Gl--~~~~~l~~~ 374 (537)
. +.+.++||+++ .....+++.
T Consensus 163 ~--~~~~~ld~Sald~~~v~~l~~~ 185 (191)
T 1oix_A 163 K--NGLSFIETSALDSTNVEAAFQT 185 (191)
T ss_dssp H--TTCEEEECCTTTCTTHHHHHHH
T ss_pred H--cCCEEEEEeCCCCCCHHHHHHH
Confidence 3 56889998888 334444433
No 77
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.08 E-value=1.6e-12 Score=120.90 Aligned_cols=31 Identities=19% Similarity=0.280 Sum_probs=26.9
Q ss_pred ccccCCCCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304 189 LSLFDFRSVPILVLGLDNAGKSSIIKRILGE 219 (537)
Q Consensus 189 ~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~ 219 (537)
++|.+.+|+.++|+|+||||||||++++.+.
T Consensus 2 vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~ 32 (171)
T 4gp7_A 2 MKLTIPELSLVVLIGSSGSGKSTFAKKHFKP 32 (171)
T ss_dssp EEEEEESSEEEEEECCTTSCHHHHHHHHSCG
T ss_pred ccccCCCCEEEEEECCCCCCHHHHHHHHccC
Confidence 3566779999999999999999999987654
No 78
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.08 E-value=1.2e-10 Score=110.05 Aligned_cols=91 Identities=26% Similarity=0.475 Sum_probs=66.4
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCC
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPD 274 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~ 274 (537)
+..+++++|++|||||||++.+.+..+..+.||.|.+...+.+++ ..+.+||++|++.++..+..++..
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~-~~l~i~Dt~G~~~~~~~~~~~~~~---------- 92 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAG-MTFTTFDLGGHIQARRVWKNYLPA---------- 92 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETT-EEEEEEEECC----CCGGGGGGGG----------
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECC-EEEEEEECCCcHhhHHHHHHHHhc----------
Confidence 345799999999999999999999877767888888888899987 999999999998887776666655
Q ss_pred ccceeeEEee-cCcccccCCcccc
Q psy16304 275 SRTCQVYLIM-CGVHQVSGIPDEL 297 (537)
Q Consensus 275 ~~~~il~v~D-s~~~~~~~l~~~l 297 (537)
++++++++| ++..++.++..++
T Consensus 93 -~d~~i~v~D~~~~~s~~~~~~~~ 115 (198)
T 1f6b_A 93 -INGIVFLVDCADHERLLESKEEL 115 (198)
T ss_dssp -CSEEEEEEETTCGGGHHHHHHHH
T ss_pred -CCEEEEEEECCCHHHHHHHHHHH
Confidence 899999999 6665555444433
No 79
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.04 E-value=1.3e-10 Score=109.68 Aligned_cols=87 Identities=16% Similarity=0.335 Sum_probs=60.3
Q ss_pred CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee--eeeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304 197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR 272 (537)
Q Consensus 197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G--~t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~ 272 (537)
.+++|+|+||||||||+++|+|..+ ..+.|+.| +....+.++| .+.+.+||++|++.++..+..++..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~-------- 77 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRG-------- 77 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTT--------
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhc--------
Confidence 5799999999999999999999865 33456655 3334788886 3577889999988766443333332
Q ss_pred CCccceeeEEee-cCcccccCCc
Q psy16304 273 PDSRTCQVYLIM-CGVHQVSGIP 294 (537)
Q Consensus 273 ~~~~~~il~v~D-s~~~~~~~l~ 294 (537)
++++++++| ++...+.++.
T Consensus 78 ---~~~~i~v~d~~~~~s~~~~~ 97 (199)
T 2f9l_A 78 ---AVGALLVYDIAKHLTYENVE 97 (199)
T ss_dssp ---CSEEEEEEETTCHHHHHTHH
T ss_pred ---CCEEEEEEECcCHHHHHHHH
Confidence 677889999 5544444433
No 80
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.02 E-value=3.8e-10 Score=105.88 Aligned_cols=90 Identities=28% Similarity=0.489 Sum_probs=71.8
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCC
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPD 274 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~ 274 (537)
+..+++++|++|||||||++.+.+..+..+.||.|.+...+.+++ ..+.+||++|++.++..+..++..
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~---------- 90 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGN-IKFTTFDLGGHIQARRLWKDYFPE---------- 90 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETT-EEEEEEECCCSGGGTTSGGGGCTT----------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECC-EEEEEEECCCCHHHHHHHHHHHhc----------
Confidence 346899999999999999999999877777888888888888887 999999999998877655554443
Q ss_pred ccceeeEEee-cCcccccCCccc
Q psy16304 275 SRTCQVYLIM-CGVHQVSGIPDE 296 (537)
Q Consensus 275 ~~~~il~v~D-s~~~~~~~l~~~ 296 (537)
++++++++| ++...+..+..+
T Consensus 91 -~d~~i~v~d~~~~~s~~~~~~~ 112 (190)
T 1m2o_B 91 -VNGIVFLVDAADPERFDEARVE 112 (190)
T ss_dssp -CCEEEEEEETTCGGGHHHHHHH
T ss_pred -CCEEEEEEECCChHHHHHHHHH
Confidence 899999999 666555444433
No 81
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.99 E-value=9.9e-11 Score=110.98 Aligned_cols=29 Identities=21% Similarity=0.397 Sum_probs=26.7
Q ss_pred CCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304 196 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG 229 (537)
Q Consensus 196 G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G 229 (537)
|++++|+|+||||||||+++|+|. +. +.|
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~----~~-~~G 29 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEV----LK-SSG 29 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHH----HH-HTT
T ss_pred CCEEEEECCCCChHHHHHHHHHhh----cc-cCC
Confidence 688999999999999999999998 76 777
No 82
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=98.99 E-value=2.9e-10 Score=109.94 Aligned_cols=109 Identities=20% Similarity=0.358 Sum_probs=76.2
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee--eEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCC
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN--RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL 270 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t--~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~ 270 (537)
+..+|+|||.+|+|||||++.+....| ..+.||.|.. ...+.+++ .+.+.+||++|+++++.++..++..
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~------ 85 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRD------ 85 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTT------
T ss_pred CcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhcc------
Confidence 457899999999999999999998777 5678999843 44555554 5789999999999999888888877
Q ss_pred CCCCccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEEec
Q psy16304 271 GRPDSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVLG 317 (537)
Q Consensus 271 l~~~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llG 317 (537)
++++++++| ++...++++..++..+.. ......++.++|
T Consensus 86 -----a~~~ilv~di~~~~Sf~~i~~~~~~i~~---~~~~~~piilVg 125 (216)
T 4dkx_A 86 -----SAAAVVVYDITNVNSFQQTTKWIDDVRT---ERGSDVIIMLVG 125 (216)
T ss_dssp -----CSEEEEEEETTCHHHHHTHHHHHHHHHH---HHTTSSEEEEEE
T ss_pred -----ccEEEEEeecchhHHHHHHHHHHHHHHH---hcCCCCeEEEEe
Confidence 999999999 888877777766544322 122345666775
No 83
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=98.99 E-value=6.9e-10 Score=100.85 Aligned_cols=88 Identities=33% Similarity=0.690 Sum_probs=72.1
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCC
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPD 274 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~ 274 (537)
+..+++++|++|+|||||++.+.+..+....||.|++...+.+++ ..+.+||++|++.++..+..++..
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~Dt~G~~~~~~~~~~~~~~---------- 74 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKN-LKFQVWDLGGLTSIRPYWRCYYSN---------- 74 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEEETT-EEEEEEEECCCGGGGGGGGGGCTT----------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccceEEEEECC-EEEEEEECCCChhhhHHHHHHhcc----------
Confidence 457899999999999999999998777667899998888888885 999999999998887666665554
Q ss_pred ccceeeEEee-cCcccccCCc
Q psy16304 275 SRTCQVYLIM-CGVHQVSGIP 294 (537)
Q Consensus 275 ~~~~il~v~D-s~~~~~~~l~ 294 (537)
++++++++| ++...+..+.
T Consensus 75 -~d~ii~v~d~~~~~s~~~~~ 94 (171)
T 1upt_A 75 -TDAVIYVVDSCDRDRIGISK 94 (171)
T ss_dssp -CSEEEEEEETTCCTTHHHHH
T ss_pred -CCEEEEEEECCCHHHHHHHH
Confidence 899999999 5554444333
No 84
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=98.98 E-value=6.4e-10 Score=104.44 Aligned_cols=93 Identities=31% Similarity=0.649 Sum_probs=71.2
Q ss_pred cCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304 192 FDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG 271 (537)
Q Consensus 192 ~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l 271 (537)
...+..+|+++|++|||||||++.+.+..+....||.|+....+.+.+ ..+.+||++|+++++..+..++..
T Consensus 25 ~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~------- 96 (192)
T 2b6h_A 25 FGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN-ICFTVWDVGGQDKIRPLWRHYFQN------- 96 (192)
T ss_dssp TTTSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETTEEEEEEEETT-EEEEEEECC-----CTTHHHHHHT-------
T ss_pred ccCCccEEEEECCCCCCHHHHHHHHHhCCccccCCcCceeEEEEEECC-EEEEEEECCCCHhHHHHHHHHhcc-------
Confidence 345678999999999999999999998877667789898777888875 999999999998887777777766
Q ss_pred CCCccceeeEEee-cCcccccCCccc
Q psy16304 272 RPDSRTCQVYLIM-CGVHQVSGIPDE 296 (537)
Q Consensus 272 ~~~~~~~il~v~D-s~~~~~~~l~~~ 296 (537)
++++++++| ++...+..+..+
T Consensus 97 ----~d~iilv~D~~~~~s~~~~~~~ 118 (192)
T 2b6h_A 97 ----TQGLIFVVDSNDRERVQESADE 118 (192)
T ss_dssp ----CCEEEEEEETTCGGGHHHHHHH
T ss_pred ----CCEEEEEEECCCHHHHHHHHHH
Confidence 899999999 665554444433
No 85
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.97 E-value=5.6e-10 Score=103.82 Aligned_cols=91 Identities=24% Similarity=0.522 Sum_probs=71.4
Q ss_pred CCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304 194 FRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP 273 (537)
Q Consensus 194 ~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~ 273 (537)
.+..+|+++|+.|||||||++.+.+..+..+.||.|++...+.+++ ..+.+||++|+++++..+..++..
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~--------- 83 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINN-TRFLMWDIGGQESLRSSWNTYYTN--------- 83 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEETT-EEEEEEECCC----CGGGHHHHTT---------
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceEEEEECC-EEEEEEECCCCHhHHHHHHHHhcC---------
Confidence 3568899999999999999999998777667899998888888886 999999999998887777776655
Q ss_pred CccceeeEEee-cCcccccCCccc
Q psy16304 274 DSRTCQVYLIM-CGVHQVSGIPDE 296 (537)
Q Consensus 274 ~~~~~il~v~D-s~~~~~~~l~~~ 296 (537)
++++++++| ++.+.+..+..+
T Consensus 84 --~d~ii~v~d~~~~~s~~~~~~~ 105 (187)
T 1zj6_A 84 --TEFVIVVVDSTDRERISVTREE 105 (187)
T ss_dssp --CCEEEEEEETTCTTTHHHHHHH
T ss_pred --CCEEEEEEeCCCHHHHHHHHHH
Confidence 899999999 555544444433
No 86
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=98.97 E-value=5.4e-10 Score=100.97 Aligned_cols=86 Identities=30% Similarity=0.662 Sum_probs=70.3
Q ss_pred eEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccc
Q psy16304 198 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRT 277 (537)
Q Consensus 198 ~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~ 277 (537)
+++++|++|+|||||++.+.+..+....||.|+....+.+.+ ..+.+||++|++.++..+..++.. ++
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~-----------~d 69 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN-ISFTVWDVGGQDKIRPLWRHYFQN-----------TQ 69 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEEEEECSS-CEEEEEECCCCGGGHHHHHHHTTT-----------CS
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcCcccCcCceeEEEEEECC-EEEEEEEcCCChhhHHHHHHHhcc-----------CC
Confidence 689999999999999999998777667889997777777765 999999999999888777776655 89
Q ss_pred eeeEEee-cCcccccCCcc
Q psy16304 278 CQVYLIM-CGVHQVSGIPD 295 (537)
Q Consensus 278 ~il~v~D-s~~~~~~~l~~ 295 (537)
++++++| ++...+..+..
T Consensus 70 ~~i~v~d~~~~~s~~~~~~ 88 (164)
T 1r8s_A 70 GLIFVVDSNDRERVNEARE 88 (164)
T ss_dssp EEEEEEETTCGGGHHHHHH
T ss_pred EEEEEEECCCHHHHHHHHH
Confidence 9999999 66555444433
No 87
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=98.96 E-value=9.5e-10 Score=101.90 Aligned_cols=89 Identities=29% Similarity=0.675 Sum_probs=72.5
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCC
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPD 274 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~ 274 (537)
+..+++++|++|||||||++.+.+.....+.||.|++...+.+++ ..+.+||++|+++++..+..++..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~Dt~G~~~~~~~~~~~~~~---------- 85 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRG-FKLNIWDVGGQKSLRSYWRNYFES---------- 85 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEEEETT-EEEEEEEECCSHHHHTTGGGGCTT----------
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccceEEEEECC-EEEEEEECCCCHhHHHHHHHHhcC----------
Confidence 567899999999999999999998776667899998888888875 999999999998877666555444
Q ss_pred ccceeeEEee-cCcccccCCcc
Q psy16304 275 SRTCQVYLIM-CGVHQVSGIPD 295 (537)
Q Consensus 275 ~~~~il~v~D-s~~~~~~~l~~ 295 (537)
++++++++| ++...+..+..
T Consensus 86 -~d~ii~v~d~~~~~s~~~~~~ 106 (186)
T 1ksh_A 86 -TDGLIWVVDSADRQRMQDCQR 106 (186)
T ss_dssp -CSEEEEEEETTCGGGHHHHHH
T ss_pred -CCEEEEEEECcCHHHHHHHHH
Confidence 899999999 66555544433
No 88
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=98.95 E-value=6.8e-10 Score=102.84 Aligned_cols=89 Identities=24% Similarity=0.521 Sum_probs=73.1
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCC
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPD 274 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~ 274 (537)
+..+|+++|+.|+|||||++.+.+..+..+.||.|++...+.+++ ..+.+||++|+++++..+..++..
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~---------- 88 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINN-TRFLMWDIGGQESLRSSWNTYYTN---------- 88 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCEEEEETT-EEEEEEEESSSGGGTCGGGGGGTT----------
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeEEEEECC-EEEEEEECCCCHhHHHHHHHHhcc----------
Confidence 567899999999999999999999888778899998888888876 999999999998887666665554
Q ss_pred ccceeeEEee-cCcccccCCcc
Q psy16304 275 SRTCQVYLIM-CGVHQVSGIPD 295 (537)
Q Consensus 275 ~~~~il~v~D-s~~~~~~~l~~ 295 (537)
++++++++| ++...+..+..
T Consensus 89 -~d~ii~v~D~~~~~s~~~~~~ 109 (181)
T 2h17_A 89 -TEFVIVVVDSTDRERISVTRE 109 (181)
T ss_dssp -CCEEEEEEETTCTTTHHHHHH
T ss_pred -CCEEEEEEECCCHHHHHHHHH
Confidence 899999999 55544444333
No 89
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.94 E-value=4.7e-10 Score=103.45 Aligned_cols=90 Identities=29% Similarity=0.613 Sum_probs=68.7
Q ss_pred CCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304 194 FRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP 273 (537)
Q Consensus 194 ~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~ 273 (537)
.+..+++++|++|||||||++.+.+..+..+.||.|+....+.+++ ..+.+||++|+..++..+..++..
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~--------- 85 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKN-LKLNVWDLGGQTSIRPYWRCYYAD--------- 85 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEEEETT-EEEEEEEEC----CCTTGGGTTTT---------
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccceEEEEECC-EEEEEEECCCCHhHHHHHHHHhcc---------
Confidence 3578899999999999999999998767667899998888888876 999999999998776555554444
Q ss_pred CccceeeEEee-cCcccccCCcc
Q psy16304 274 DSRTCQVYLIM-CGVHQVSGIPD 295 (537)
Q Consensus 274 ~~~~~il~v~D-s~~~~~~~l~~ 295 (537)
++++++++| ++...+..+..
T Consensus 86 --~d~ii~v~d~~~~~s~~~~~~ 106 (183)
T 1moz_A 86 --TAAVIFVVDSTDKDRMSTASK 106 (183)
T ss_dssp --EEEEEEEEETTCTTTHHHHHH
T ss_pred --CCEEEEEEECCCHHHHHHHHH
Confidence 899999999 55554444433
No 90
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=98.94 E-value=1.4e-09 Score=101.62 Aligned_cols=90 Identities=24% Similarity=0.557 Sum_probs=71.8
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCCc--cccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPII--SLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR 272 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~--~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~ 272 (537)
...+|+|+|+.|||||||++.|++..+. .+.||.|++...+...+ ..+.+||++|++.++..+..++..
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~-------- 86 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGR-VAFTVFDMGGAKKFRGLWETYYDN-------- 86 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEEEETT-EEEEEEEECCSGGGGGGGGGGCTT--------
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEEEeCC-EEEEEEECCCCHhHHHHHHHHHhc--------
Confidence 4578999999999999999999998874 45899998888887665 999999999999888776665554
Q ss_pred CCccceeeEEee-cCcccccCCccc
Q psy16304 273 PDSRTCQVYLIM-CGVHQVSGIPDE 296 (537)
Q Consensus 273 ~~~~~~il~v~D-s~~~~~~~l~~~ 296 (537)
++++++++| ++...+..+..+
T Consensus 87 ---~d~ii~v~D~~~~~s~~~~~~~ 108 (199)
T 4bas_A 87 ---IDAVIFVVDSSDHLRLCVVKSE 108 (199)
T ss_dssp ---CSEEEEEEETTCGGGHHHHHHH
T ss_pred ---CCEEEEEEECCcHHHHHHHHHH
Confidence 899999999 655555444433
No 91
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.93 E-value=8.9e-11 Score=125.26 Aligned_cols=171 Identities=11% Similarity=-0.038 Sum_probs=95.9
Q ss_pred ccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchh------hHHHHhhhhc
Q psy16304 191 LFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF------RTIWKQYLGT 264 (537)
Q Consensus 191 l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~------r~~~~~~i~~ 264 (537)
+.+.+|++++|+|+||||||||+++|+|. ..|+.| .+.+.| .+- .+. ..+ ...+++.+++
T Consensus 152 l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~----~~~~~G----~i~~~G-~r~--~ev---~~~~~~~~~~~~l~r~i~~ 217 (438)
T 2dpy_A 152 LTVGRGQRMGLFAGSGVGKSVLLGMMARY----TRADVI----VVGLIG-ERG--REV---KDFIENILGPDGRARSVVI 217 (438)
T ss_dssp SCCBTTCEEEEEECTTSSHHHHHHHHHHH----SCCSEE----EEEEES-CCH--HHH---HHHHHTTTHHHHHHTEEEE
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHhcc----cCCCeE----EEEEec-eec--HHH---HHHHHhhccccccCceEEE
Confidence 66789999999999999999999999999 899999 777665 100 000 010 1123455677
Q ss_pred cccCCC-CCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeecccc
Q psy16304 265 VSQTPL-GRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG 343 (537)
Q Consensus 265 v~Q~~~-l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~ 343 (537)
++|... .+...+. .+......++... .....+..+. . +..||+|+ |++ +
T Consensus 218 v~q~~~~~~~~~~v----------------~~~~~~~ae~~~~-~~~~v~~~ld-------~-l~~lS~g~-qrv----s 267 (438)
T 2dpy_A 218 AAPADVSPLLRMQG----------------AAYATRIAEDFRD-RGQHVLLIMD-------S-LTRYAMAQ-REI----A 267 (438)
T ss_dssp EECTTSCHHHHHHH----------------HHHHHHHHHHHHT-TTCEEEEEEE-------C-HHHHHHHH-HHH----H
T ss_pred EECCCCCHHHHHHH----------------HHHHHHHHHHHHh-CCCCHHHHHH-------h-HHHHHHHH-HHH----H
Confidence 777422 1111000 0000000000000 0111222331 1 67899999 888 6
Q ss_pred cccceeccCCceEEEEEecCch--hhHHHHHHHHHhcCC-----E------EEEEEeCCCcchhhhhhhhhhcCCcEEEE
Q psy16304 344 FNRARVEYGNKYEVFLYDLGGS--EDFRTIWKQYLGTVS-----Q------TLLVSHSLSGRPDDRCQVYLMSCNCQVYL 410 (537)
Q Consensus 344 la~all~~~e~p~lllLDT~Gl--~~~~~l~~~~~~~~~-----~------vIlVvdshd~~~~~~~~i~ll~~G~ii~~ 410 (537)
++ + .+ |++ |+|+ .....+++.+.+... + +++++ +||........++.+.+|+++..
T Consensus 268 lA---l--~~-p~~----t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~-tHdl~~~iad~v~~l~dG~Ivl~ 336 (438)
T 2dpy_A 268 LA---I--GE-PPA----TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTE-GDDQQDPIADSARAILDGHIVLS 336 (438)
T ss_dssp HH---T--TC-CCC----SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECS-SSCSCCHHHHHHHHHSSEEEEEC
T ss_pred HH---h--CC-Ccc----cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEe-CCCccchhhceEEEEeCcEEEEe
Confidence 66 3 33 666 7777 233333333332211 3 45555 89988322333889999999887
Q ss_pred ecccch
Q psy16304 411 ISAKNL 416 (537)
Q Consensus 411 g~nkdl 416 (537)
+...++
T Consensus 337 ~~~~~~ 342 (438)
T 2dpy_A 337 RRLAEA 342 (438)
T ss_dssp HHHHHT
T ss_pred CCHHHc
Confidence 766554
No 92
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.92 E-value=4.9e-10 Score=113.93 Aligned_cols=175 Identities=11% Similarity=0.127 Sum_probs=93.9
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCC---chhhHHH--HhhhhccccCC
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGS---EDFRTIW--KQYLGTVSQTP 269 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~---~~~r~~~--~~~i~~v~Q~~ 269 (537)
+|++++|+||||||||||+++|+|. +.|+.| ++.+.+ .|+... +... .| +..+++++|..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagl----l~~~~g----~V~l~g------~D~~r~~a~~ql~-~~~~~~~i~~v~q~~ 165 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRY----YQNLGK----KVMFCA------GDTFRAAGGTQLS-EWGKRLSIPVIQGPE 165 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH----HHTTTC----CEEEEC------CCCSSTTTTHHHH-HHHHHHTCCEECCCT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH----HHhcCC----EEEEEe------ecCCChhHHHHHH-HHHHhcCceEEEeCC
Confidence 6899999999999999999999999 999999 666554 333221 1221 22 24578888886
Q ss_pred CCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccccccccee
Q psy16304 270 LGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARV 349 (537)
Q Consensus 270 ~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all 349 (537)
.+.+.... .+.+.... . .......+...|..+. +..++.+|| ++++ ++++++.
T Consensus 166 ~~~p~~~v----------------~~~v~~~~-~--~~~d~~llDt~G~~~~-~~~~~~eLs---~~r~----~iaRal~ 218 (304)
T 1rj9_A 166 GTDSAALA----------------YDAVQAMK-A--RGYDLLFVDTAGRLHT-KHNLMEELK---KVKR----AIAKADP 218 (304)
T ss_dssp TCCHHHHH----------------HHHHHHHH-H--HTCSEEEECCCCCCTT-CHHHHHHHH---HHHH----HHHHHCT
T ss_pred CCCHHHHH----------------HHHHHHHH-h--CCCCEEEecCCCCCCc-hHHHHHHHH---HHHH----HHHHhhc
Confidence 63321111 01010000 0 0000011123444332 344566777 6777 7899888
Q ss_pred ccCCceEEEEEe-cCchhhHHHHHHHHHhcCCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEeccc
Q psy16304 350 EYGNKYEVFLYD-LGGSEDFRTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAK 414 (537)
Q Consensus 350 ~~~e~p~lllLD-T~Gl~~~~~l~~~~~~~~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nk 414 (537)
..+. .-++.|| +.+.+. ......+.+..+.+++++ +|+......-. .+..+-|.++.+.+..
T Consensus 219 ~~P~-~~lLvLDa~t~~~~-~~~~~~~~~~~~~t~iiv-Th~d~~a~gg~~l~i~~~~~~pi~~ig~G 283 (304)
T 1rj9_A 219 EEPK-EVWLVLDAVTGQNG-LEQAKKFHEAVGLTGVIV-TKLDGTAKGGVLIPIVRTLKVPIKFVGVG 283 (304)
T ss_dssp TCCS-EEEEEEETTBCTHH-HHHHHHHHHHHCCSEEEE-ECTTSSCCCTTHHHHHHHHCCCEEEEECS
T ss_pred CCCC-eEEEEEcHHHHHHH-HHHHHHHHHHcCCcEEEE-ECCcccccccHHHHHHHHHCCCeEEEeCC
Confidence 6332 2377889 555543 334455544433444444 45433332212 2223346666665544
No 93
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=98.92 E-value=9.4e-10 Score=102.56 Aligned_cols=89 Identities=24% Similarity=0.561 Sum_probs=71.8
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCC-C-ccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEP-I-ISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR 272 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~-~-~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~ 272 (537)
+..+|+|+|+.|+|||||++.|.+.. + ..+.||.|+....+.+++ ..+.+||++|++.++..+..++..
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~Dt~G~~~~~~~~~~~~~~-------- 90 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSS-LSFTVFDMSGQGRYRNLWEHYYKE-------- 90 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEEEEECSS-CEEEEEEECCSTTTGGGGGGGGGG--------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEEEEEECC-EEEEEEECCCCHHHHHHHHHHHhc--------
Confidence 46789999999999999999999986 3 456789998888888886 999999999998888777666655
Q ss_pred CCccceeeEEee-cCcccccCCcc
Q psy16304 273 PDSRTCQVYLIM-CGVHQVSGIPD 295 (537)
Q Consensus 273 ~~~~~~il~v~D-s~~~~~~~l~~ 295 (537)
++++++++| ++...+..+..
T Consensus 91 ---~d~ii~v~d~~~~~s~~~~~~ 111 (190)
T 2h57_A 91 ---GQAIIFVIDSSDRLRMVVAKE 111 (190)
T ss_dssp ---CSEEEEEEETTCHHHHHHHHH
T ss_pred ---CCEEEEEEECCCHHHHHHHHH
Confidence 899999999 55544444333
No 94
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.92 E-value=3.1e-11 Score=127.66 Aligned_cols=147 Identities=14% Similarity=0.020 Sum_probs=83.3
Q ss_pred eEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccc
Q psy16304 198 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRT 277 (537)
Q Consensus 198 ~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~ 277 (537)
.+||+|+||||||||+|+|+|. ..|+.| .+.+++ ..+. + .++++|.+. ++.
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl----~~p~~G----sI~~~g-~~~t----------~------~~~v~q~~~-~~~--- 121 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGI----GNEEEG----AAKTGV-VEVT----------M------ERHPYKHPN-IPN--- 121 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTC----CTTSTT----SCCCCC---------------C------CCEEEECSS-CTT---
T ss_pred EEEEECCCCCcHHHHHHHHhCC----CCccCc----eEEECC-eecc----------e------eEEeccccc-cCC---
Confidence 9999999999999999999999 899999 776665 2210 1 155666632 111
Q ss_pred eeeEEee-cCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCC--CceeeecccccccceeccC--
Q psy16304 278 CQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGE--PIISLVPTVGFNRARVEYG-- 352 (537)
Q Consensus 278 ~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG--~rqrvs~ti~la~all~~~-- 352 (537)
+.+.| ..... . .......+..+|+.+.. .. +. +|+| ++|++ .+++++...+
T Consensus 122 --ltv~D~~g~~~-~--------------~~~~~~~L~~~~L~~~~-~~-~~-lS~G~~~kqrv----~la~aL~~~~~p 177 (413)
T 1tq4_A 122 --VVFWDLPGIGS-T--------------NFPPDTYLEKMKFYEYD-FF-II-ISATRFKKNDI----DIAKAISMMKKE 177 (413)
T ss_dssp --EEEEECCCGGG-S--------------SCCHHHHHHHTTGGGCS-EE-EE-EESSCCCHHHH----HHHHHHHHTTCE
T ss_pred --eeehHhhcccc-h--------------HHHHHHHHHHcCCCccC-Ce-EE-eCCCCccHHHH----HHHHHHHhcCCC
Confidence 12233 11000 0 00111122233444332 12 23 9999 89999 7777776521
Q ss_pred ------CceEEEEEe--cCch-----hhHHHHHHHHH-----hcC--CEEEEEEeCCCcch--hhhhh
Q psy16304 353 ------NKYEVFLYD--LGGS-----EDFRTIWKQYL-----GTV--SQTLLVSHSLSGRP--DDRCQ 398 (537)
Q Consensus 353 ------e~p~lllLD--T~Gl-----~~~~~l~~~~~-----~~~--~~vIlVvdshd~~~--~~~~~ 398 (537)
+ |+++++| |+|+ +.....++.+. +.+ ...++++++|+... ++.++
T Consensus 178 ~~lV~tk-pdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~ 244 (413)
T 1tq4_A 178 FYFVRTK-VDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLM 244 (413)
T ss_dssp EEEEECC-HHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHH
T ss_pred eEEEEec-CcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHH
Confidence 3 6788888 8887 33333444443 221 23455555888765 55554
No 95
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.91 E-value=5.6e-12 Score=120.63 Aligned_cols=29 Identities=14% Similarity=0.188 Sum_probs=24.6
Q ss_pred ccCCCCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304 191 LFDFRSVPILVLGLDNAGKSSIIKRILGE 219 (537)
Q Consensus 191 l~~~~G~~vgLVG~NGAGKSTLL~~L~G~ 219 (537)
..+.+|++++|+||||||||||+++|+|.
T Consensus 15 ~~i~~Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 15 QPAAVGRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 35679999999999999999999999998
No 96
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=98.91 E-value=6.2e-10 Score=116.04 Aligned_cols=81 Identities=9% Similarity=0.076 Sum_probs=54.4
Q ss_pred ccchhhhhcCCCceeeecccccccceec----cCCceEEEEEe--cCchhhHH--HHHHHHH--hcCCEEEEEEeCCCcc
Q psy16304 323 KSSIIKRILGEPIISLVPTVGFNRARVE----YGNKYEVFLYD--LGGSEDFR--TIWKQYL--GTVSQTLLVSHSLSGR 392 (537)
Q Consensus 323 Ks~li~~LSgG~rqrvs~ti~la~all~----~~e~p~lllLD--T~Gl~~~~--~l~~~~~--~~~~~vIlVvdshd~~ 392 (537)
....+.+|||||+||+ +++++++. ..+ |++++|| |+|++... .+++.+. ...+.+++++ +|++.
T Consensus 273 ~~~~~~~LSgGe~qr~----~la~al~~~~~~~~~-p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~i-tH~~~ 346 (365)
T 3qf7_A 273 IERPARGLSGGERALI----SISLAMSLAEVASGR-LDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFI-THDRE 346 (365)
T ss_dssp EEEEGGGSCHHHHHHH----HHHHHHHHHHHTTTT-CCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEE-ESCHH
T ss_pred cCCCchhCCHHHHHHH----HHHHHHHhhhcccCC-CCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEE-ecchH
Confidence 3456889999999999 87777762 123 8999999 99994332 2223222 1234566666 78887
Q ss_pred hhhhhh-hhhhcCCcEEE
Q psy16304 393 PDDRCQ-VYLMSCNCQVY 409 (537)
Q Consensus 393 ~~~~~~-i~ll~~G~ii~ 409 (537)
....++ ++++++|+++.
T Consensus 347 ~~~~~d~~~~l~~G~i~~ 364 (365)
T 3qf7_A 347 FSEAFDRKLRITGGVVVN 364 (365)
T ss_dssp HHTTCSCEEEEETTEEC-
T ss_pred HHHhCCEEEEEECCEEEe
Confidence 755555 88889998753
No 97
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=98.91 E-value=6.4e-10 Score=103.51 Aligned_cols=89 Identities=33% Similarity=0.605 Sum_probs=70.3
Q ss_pred CCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304 194 FRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP 273 (537)
Q Consensus 194 ~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~ 273 (537)
++..+++++|++|+|||||++.+.+..+....||.|++...+.+++ ..+.+||++|+++++..+..++.
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~Dt~G~~~~~~~~~~~~~---------- 88 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQYKN-ISFEVWDLGGQTGVRPYWRCYFS---------- 88 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCEEEEEETT-EEEEEEEECCSSSSCCCCSSSST----------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceEEEEEEECC-EEEEEEECCCCHhHHHHHHHHhh----------
Confidence 3568899999999999999999998877667889998888888875 99999999999876644333333
Q ss_pred CccceeeEEee-cCcccccCCc
Q psy16304 274 DSRTCQVYLIM-CGVHQVSGIP 294 (537)
Q Consensus 274 ~~~~~il~v~D-s~~~~~~~l~ 294 (537)
.++++++++| ++.+.+..+.
T Consensus 89 -~~d~ii~v~d~~~~~s~~~~~ 109 (189)
T 2x77_A 89 -DTDAVIYVVDSTDRDRMGVAK 109 (189)
T ss_dssp -TCCEEEEEEETTCCTTHHHHH
T ss_pred -cCCEEEEEEeCCCHHHHHHHH
Confidence 3899999999 5555444333
No 98
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.90 E-value=9.5e-11 Score=119.67 Aligned_cols=33 Identities=21% Similarity=0.024 Sum_probs=30.4
Q ss_pred CCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304 193 DFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG 229 (537)
Q Consensus 193 ~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G 229 (537)
..+|+++||+|+||||||||+++|+|. +.|+.|
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gl----l~~~~G 119 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQAL----LARWDH 119 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHH----HHTSTT
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhh----ccccCC
Confidence 568999999999999999999999998 888766
No 99
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.90 E-value=2.8e-11 Score=117.06 Aligned_cols=68 Identities=16% Similarity=0.102 Sum_probs=40.9
Q ss_pred ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304 187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVS 266 (537)
Q Consensus 187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~ 266 (537)
..++|.+.+|++++|+||||||||||+++|+|. + | | .+.+ + ..+.- ....... ...++++|
T Consensus 14 ~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~----~-p--G----~i~~-g-~~~~~--~~~~~~~----~~~i~~~~ 74 (218)
T 1z6g_A 14 LVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNE----F-P--N----YFYF-S-VSCTT--RKKREKE----KEGVDYYF 74 (218)
T ss_dssp --------CCCCEEEECSTTSSHHHHHHHHHHH----S-T--T----TEEE-C-CCEEC--SCCCSSC----CBTTTBEE
T ss_pred cCCceecCCCCEEEEECCCCCCHHHHHHHHHhh----C-C--C----cEEE-e-ecccC--CCCCccc----ccCCeEEE
Confidence 345677889999999999999999999999998 6 5 8 6665 3 22211 1100111 14578888
Q ss_pred cCCCCCC
Q psy16304 267 QTPLGRP 273 (537)
Q Consensus 267 Q~~~l~~ 273 (537)
|++.++.
T Consensus 75 ~~~~~~~ 81 (218)
T 1z6g_A 75 IDKTIFE 81 (218)
T ss_dssp CCHHHHH
T ss_pred CCHHHHH
Confidence 8765443
No 100
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=98.88 E-value=2.8e-09 Score=99.36 Aligned_cols=89 Identities=26% Similarity=0.613 Sum_probs=72.1
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP 273 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~ 273 (537)
+..+|+|+|+.|+|||||++.|.+..+ ..+.||.|++...+...+ ..+.+||++|+++++..+..++..
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~Dt~G~~~~~~~~~~~~~~--------- 90 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGN-VTIKLWDIGGQPRFRSMWERYCRG--------- 90 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETT-EEEEEEEECCSHHHHTTHHHHHTT---------
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEEEeCC-EEEEEEECCCCHhHHHHHHHHHcc---------
Confidence 457899999999999999999998776 457789998777777665 999999999999888777776665
Q ss_pred CccceeeEEee-cCcccccCCcc
Q psy16304 274 DSRTCQVYLIM-CGVHQVSGIPD 295 (537)
Q Consensus 274 ~~~~~il~v~D-s~~~~~~~l~~ 295 (537)
++++++++| ++...+..+..
T Consensus 91 --~d~ii~v~D~~~~~s~~~~~~ 111 (188)
T 1zd9_A 91 --VSAIVYMVDAADQEKIEASKN 111 (188)
T ss_dssp --CSEEEEEEETTCGGGHHHHHH
T ss_pred --CCEEEEEEECCCHHHHHHHHH
Confidence 899999999 55555444433
No 101
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.87 E-value=6.5e-10 Score=114.35 Aligned_cols=45 Identities=16% Similarity=0.116 Sum_probs=39.1
Q ss_pred ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECC
Q psy16304 187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGN 239 (537)
Q Consensus 187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g 239 (537)
..+++.+.+|+.++|+|+||||||||+++|+|. +.|+.| .+.++|
T Consensus 162 ~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~----~~~~~g----~i~i~~ 206 (330)
T 2pt7_A 162 SAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEF----IPKEER----IISIED 206 (330)
T ss_dssp HHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGG----SCTTSC----EEEEES
T ss_pred hhhhhhccCCCEEEEECCCCCCHHHHHHHHhCC----CcCCCc----EEEECC
Confidence 345666778999999999999999999999999 999999 777655
No 102
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=98.87 E-value=9.4e-10 Score=100.77 Aligned_cols=92 Identities=20% Similarity=0.296 Sum_probs=71.5
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee--eeeEEEEECC--cEEEEEeecCCCchhhHHHHhhhhccccCC
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEYGN--KYEVFLYDLGGSEDFRTIWKQYLGTVSQTP 269 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G--~t~~~i~i~g--~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~ 269 (537)
+..+++++|++|||||||++.+.+..+ ..+.||.| +....+.+++ ...+.+||++|++.++..+..++..
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~----- 79 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYG----- 79 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTT-----
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhh-----
Confidence 346799999999999999999998766 34567777 5556777775 3889999999998887777777665
Q ss_pred CCCCCccceeeEEee-cCcccccCCcccc
Q psy16304 270 LGRPDSRTCQVYLIM-CGVHQVSGIPDEL 297 (537)
Q Consensus 270 ~l~~~~~~~il~v~D-s~~~~~~~l~~~l 297 (537)
++++++++| ++...++.+..++
T Consensus 80 ------~d~~i~v~d~~~~~s~~~~~~~~ 102 (178)
T 2hxs_A 80 ------AQGVLLVYDITNYQSFENLEDWY 102 (178)
T ss_dssp ------CSEEEEEEETTCHHHHHTHHHHH
T ss_pred ------CCEEEEEEECCCHHHHHHHHHHH
Confidence 899999999 6655555544443
No 103
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.86 E-value=1.9e-10 Score=119.09 Aligned_cols=41 Identities=15% Similarity=0.015 Sum_probs=36.3
Q ss_pred ccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECC
Q psy16304 191 LFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGN 239 (537)
Q Consensus 191 l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g 239 (537)
+.+.+|+++||+|+||||||||+++|+|. ..|+.| .+.+.|
T Consensus 66 l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~----~~~~~g----~i~~~G 106 (347)
T 2obl_A 66 LTCGIGQRIGIFAGSGVGKSTLLGMICNG----ASADII----VLALIG 106 (347)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHH----SCCSEE----EEEEES
T ss_pred eeecCCCEEEEECCCCCCHHHHHHHHhcC----CCCCEE----EEEEec
Confidence 66779999999999999999999999999 889999 665544
No 104
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=98.84 E-value=2e-09 Score=98.81 Aligned_cols=107 Identities=17% Similarity=0.205 Sum_probs=73.4
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee-eEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN-RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR 272 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t-~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~ 272 (537)
+..+++++|++|+|||||++.+++..+..+.||.|.. ...+.+++ .+.+.+||++|+++. .++..
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-----~~~~~-------- 72 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPDA-----KFSGW-------- 72 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEEEEEEEETTEEEEEEEEECSSSCCH-----HHHHH--------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEECCEEEEEEEEECCCCchh-----HHHHh--------
Confidence 3468999999999999999999998776677888833 34566665 467899999998762 34444
Q ss_pred CCccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEEec
Q psy16304 273 PDSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVLG 317 (537)
Q Consensus 273 ~~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llG 317 (537)
++++++++| ++...+..+..++.++..+........++.++|
T Consensus 73 ---~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~ 115 (178)
T 2iwr_A 73 ---ADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVG 115 (178)
T ss_dssp ---CSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEE
T ss_pred ---CCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 889999999 666665555554433332222112334555554
No 105
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=98.83 E-value=2.4e-09 Score=96.83 Aligned_cols=90 Identities=13% Similarity=0.131 Sum_probs=50.5
Q ss_pred CeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeE-EEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCCCC
Q psy16304 197 VPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA-RVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPD 274 (537)
Q Consensus 197 ~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~-~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~ 274 (537)
.+++++|++|||||||++.+.|..+....++.|.+.. .+.+++ ...+.+||++|++.++..+..++..
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~---------- 72 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAM---------- 72 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCCC----------CEEEEEEEETTEEEEEEEEECC-------------------------
T ss_pred EEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhh----------
Confidence 5799999999999999999999866666677775553 455554 5688999999998877666665554
Q ss_pred ccceeeEEee-cCcccccCCcccc
Q psy16304 275 SRTCQVYLIM-CGVHQVSGIPDEL 297 (537)
Q Consensus 275 ~~~~il~v~D-s~~~~~~~l~~~l 297 (537)
++++++++| ++...++.+..++
T Consensus 73 -~~~~i~v~d~~~~~s~~~~~~~~ 95 (166)
T 3q72_A 73 -GDAYVIVYSVTDKGSFEKASELR 95 (166)
T ss_dssp -CCEEEEEEETTCHHHHHHHHHHH
T ss_pred -CCEEEEEEECCCHHHHHHHHHHH
Confidence 889999999 6655554444433
No 106
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.83 E-value=1.6e-09 Score=110.79 Aligned_cols=80 Identities=8% Similarity=0.030 Sum_probs=50.0
Q ss_pred chhhhhcCCCceeeecccccccceec--cCCceEEEEEe--cCchhhH--HHHHHHHHhc-CCEEEEEEeCCCcchhhhh
Q psy16304 325 SIIKRILGEPIISLVPTVGFNRARVE--YGNKYEVFLYD--LGGSEDF--RTIWKQYLGT-VSQTLLVSHSLSGRPDDRC 397 (537)
Q Consensus 325 ~li~~LSgG~rqrvs~ti~la~all~--~~e~p~lllLD--T~Gl~~~--~~l~~~~~~~-~~~vIlVvdshd~~~~~~~ 397 (537)
..+..||+||+|++ +++++++. ..+ |++++|| |++++.. ..+++.+.+. .+.+++++ +|+......+
T Consensus 215 ~~~~~lS~Gq~q~v----~ia~~l~~~~~~~-~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~-tH~~~~~~~~ 288 (322)
T 1e69_A 215 QKLSLLSGGEKALV----GLALLFALMEIKP-SPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVI-THNKIVMEAA 288 (322)
T ss_dssp CBGGGSCHHHHHHH----HHHHHHHHTTTSC-CSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEE-CCCTTGGGGC
T ss_pred CchhhCCHHHHHHH----HHHHHHHHhccCC-CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEE-ECCHHHHhhC
Confidence 34789999999999 88888763 133 7999999 9999332 2222222221 23466666 7886544433
Q ss_pred h---hhhhcCCcEEEE
Q psy16304 398 Q---VYLMSCNCQVYL 410 (537)
Q Consensus 398 ~---i~ll~~G~ii~~ 410 (537)
+ .+++.+|.....
T Consensus 289 d~~~~v~~~~g~s~~~ 304 (322)
T 1e69_A 289 DLLHGVTMVNGVSAIV 304 (322)
T ss_dssp SEEEEEEESSSCEEEE
T ss_pred ceEEEEEEeCCEEEEE
Confidence 3 255666765443
No 107
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=98.83 E-value=4.6e-09 Score=99.30 Aligned_cols=92 Identities=18% Similarity=0.338 Sum_probs=66.6
Q ss_pred CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee--eeeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304 196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG 271 (537)
Q Consensus 196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G--~t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l 271 (537)
-.+|+|+|+.|+|||||++.+.+..+ ..+.||.| +....+.+++ .+.+.+||++|+++++..+..++..
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~------- 101 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRS------- 101 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTT-------
T ss_pred ceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhh-------
Confidence 46799999999999999999998766 44567777 4456677765 3789999999999888877777766
Q ss_pred CCCccceeeEEee-cCcccccCCccccc
Q psy16304 272 RPDSRTCQVYLIM-CGVHQVSGIPDELT 298 (537)
Q Consensus 272 ~~~~~~~il~v~D-s~~~~~~~l~~~l~ 298 (537)
++++++++| ++...++.+..++.
T Consensus 102 ----~d~iilv~D~~~~~s~~~~~~~~~ 125 (201)
T 2hup_A 102 ----ANGAILAYDITKRSSFLSVPHWIE 125 (201)
T ss_dssp ----CSEEEEEEETTBHHHHHTHHHHHH
T ss_pred ----CCEEEEEEECCCHHHHHHHHHHHH
Confidence 899999999 66555555544443
No 108
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.82 E-value=5.3e-09 Score=99.30 Aligned_cols=92 Identities=22% Similarity=0.356 Sum_probs=69.4
Q ss_pred CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee--eeeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304 196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG 271 (537)
Q Consensus 196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G--~t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l 271 (537)
-.+|+|+|++|+|||||++.+.+..+ ....|+.| +....+.+++ .+.+.+||++|++.++..+..++..
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~------- 98 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRS------- 98 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTT-------
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhc-------
Confidence 35799999999999999999988765 34567777 3345666766 4689999999998888766666555
Q ss_pred CCCccceeeEEee-cCcccccCCccccc
Q psy16304 272 RPDSRTCQVYLIM-CGVHQVSGIPDELT 298 (537)
Q Consensus 272 ~~~~~~~il~v~D-s~~~~~~~l~~~l~ 298 (537)
++++++++| ++...++.+..++.
T Consensus 99 ----~d~~i~v~D~~~~~s~~~~~~~~~ 122 (201)
T 2ew1_A 99 ----ANALILTYDITCEESFRCLPEWLR 122 (201)
T ss_dssp ----CSEEEEEEETTCHHHHHTHHHHHH
T ss_pred ----CCEEEEEEECCCHHHHHHHHHHHH
Confidence 899999999 66655555544443
No 109
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.81 E-value=3e-09 Score=112.61 Aligned_cols=158 Identities=19% Similarity=0.152 Sum_probs=98.0
Q ss_pred cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCC-------CccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHh
Q psy16304 188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEP-------IISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQ 260 (537)
Q Consensus 188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~-------~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~ 260 (537)
.+++.++.++.++|||+|||||||||++|++.. +.+..|+.| .+.+++...+.++|++|+..... .
T Consensus 149 ~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G----~V~~~~~~~~~l~DtpGli~~a~---~ 221 (416)
T 1udx_A 149 RLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLG----VVEVSEEERFTLADIPGIIEGAS---E 221 (416)
T ss_dssp EEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEE----EEECSSSCEEEEEECCCCCCCGG---G
T ss_pred eeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceee----EEEecCcceEEEEeccccccchh---h
Confidence 455777889999999999999999999999973 234567777 77776547788999988743210 0
Q ss_pred hhhccccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeec
Q psy16304 261 YLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVP 340 (537)
Q Consensus 261 ~i~~v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ 340 (537)
..+ +... .+ ....+....+.++++. ...+.+||+++++++
T Consensus 222 ~~~-----------------------------L~~~--fl---~~~era~~lL~vvDls----~~~~~~ls~g~~el~-- 261 (416)
T 1udx_A 222 GKG-----------------------------LGLE--FL---RHIARTRVLLYVLDAA----DEPLKTLETLRKEVG-- 261 (416)
T ss_dssp SCC-----------------------------SCHH--HH---HHHTSSSEEEEEEETT----SCHHHHHHHHHHHHH--
T ss_pred hhh-----------------------------hhHH--HH---HHHHHHHhhhEEeCCc----cCCHHHHHHHHHHHH--
Confidence 000 0000 00 0112234455667665 344788999999988
Q ss_pred ccccccceeccCCceEEEEE---ecCchhhHHHHHHHHHhcCCEEEEEEeCCCcchhhhhh
Q psy16304 341 TVGFNRARVEYGNKYEVFLY---DLGGSEDFRTIWKQYLGTVSQTLLVSHSLSGRPDDRCQ 398 (537)
Q Consensus 341 ti~la~all~~~e~p~lllL---DT~Gl~~~~~l~~~~~~~~~~vIlVvdshd~~~~~~~~ 398 (537)
.+++++.. . |.++++ |.... .....+...++.....++.++++...-.+.+.
T Consensus 262 --~la~aL~~-~--P~ILVlNKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~ 316 (416)
T 1udx_A 262 --AYDPALLR-R--PSLVALNKVDLLEE-EAVKALADALAREGLAVLPVSALTGAGLPALK 316 (416)
T ss_dssp --HHCHHHHH-S--CEEEEEECCTTSCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHH
T ss_pred --HHhHHhhc-C--CEEEEEECCChhhH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHH
Confidence 77877775 4 678876 32222 22223334444334456666577776655544
No 110
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.80 E-value=5.5e-09 Score=94.42 Aligned_cols=88 Identities=20% Similarity=0.333 Sum_probs=67.4
Q ss_pred CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee--eEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304 197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN--RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR 272 (537)
Q Consensus 197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t--~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~ 272 (537)
.+++++|+.|||||||++.+.+..+ ....|+.|.+ ...+.+++ ...+.+||++|++.++..+..++..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~-------- 75 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRN-------- 75 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTT--------
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhcc--------
Confidence 4799999999999999999998766 4466887744 34566665 4689999999998888777776665
Q ss_pred CCccceeeEEee-cCcccccCCcc
Q psy16304 273 PDSRTCQVYLIM-CGVHQVSGIPD 295 (537)
Q Consensus 273 ~~~~~~il~v~D-s~~~~~~~l~~ 295 (537)
++++++++| ++...+..+..
T Consensus 76 ---~d~~i~v~d~~~~~s~~~~~~ 96 (170)
T 1ek0_A 76 ---AQAALVVYDVTKPQSFIKARH 96 (170)
T ss_dssp ---CSEEEEEEETTCHHHHHHHHH
T ss_pred ---CcEEEEEEecCChHHHHHHHH
Confidence 899999999 55544444433
No 111
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=98.80 E-value=8.3e-09 Score=96.98 Aligned_cols=88 Identities=22% Similarity=0.382 Sum_probs=67.7
Q ss_pred CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee--EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304 197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR--ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR 272 (537)
Q Consensus 197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~--~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~ 272 (537)
.+|+|+|+.|||||||++.|.+..+ ..+.|+.|.+. ..+.+++ ...+.+||++|++.++..+..++..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~-------- 80 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRG-------- 80 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGG--------
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcC--------
Confidence 5799999999999999999999876 44567777443 4455554 5789999999999888777766665
Q ss_pred CCccceeeEEee-cCcccccCCcc
Q psy16304 273 PDSRTCQVYLIM-CGVHQVSGIPD 295 (537)
Q Consensus 273 ~~~~~~il~v~D-s~~~~~~~l~~ 295 (537)
++++++++| ++...+..+..
T Consensus 81 ---~d~ii~v~d~~~~~s~~~~~~ 101 (203)
T 1zbd_A 81 ---AMGFILMYDITNEESFNAVQD 101 (203)
T ss_dssp ---CSEEEEEEETTCHHHHHHHHH
T ss_pred ---CCEEEEEEECcCHHHHHHHHH
Confidence 899999999 55544443333
No 112
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=98.79 E-value=7.4e-09 Score=96.55 Aligned_cols=91 Identities=16% Similarity=0.288 Sum_probs=68.3
Q ss_pred CCeEEEEeCCCCcHHHHHHHHhCCCCc-cccCceeee--eEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304 196 SVPILVLGLDNAGKSSIIKRILGEPII-SLVPTVGFN--RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG 271 (537)
Q Consensus 196 G~~vgLVG~NGAGKSTLL~~L~G~~~~-~~~Pt~G~t--~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l 271 (537)
-.+|+|+|++|+|||||++.|.+..+. ...++.|.+ ...+.+++ +..+.+||++|+++++..+..++..
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~------- 97 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRG------- 97 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTT-------
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhcc-------
Confidence 367999999999999999999987763 456777743 34455554 5789999999998887777766665
Q ss_pred CCCccceeeEEee-cCcccccCCcccc
Q psy16304 272 RPDSRTCQVYLIM-CGVHQVSGIPDEL 297 (537)
Q Consensus 272 ~~~~~~~il~v~D-s~~~~~~~l~~~l 297 (537)
++++++++| ++...+..+..++
T Consensus 98 ----~d~vi~v~D~~~~~s~~~~~~~l 120 (193)
T 2oil_A 98 ----AVGALLVFDLTKHQTYAVVERWL 120 (193)
T ss_dssp ----CCEEEEEEETTCHHHHHTHHHHH
T ss_pred ----CCEEEEEEECCCHHHHHHHHHHH
Confidence 889999999 5555544444443
No 113
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=98.78 E-value=9e-09 Score=94.97 Aligned_cols=91 Identities=18% Similarity=0.327 Sum_probs=68.2
Q ss_pred CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceee--eeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304 196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGF--NRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG 271 (537)
Q Consensus 196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~--t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l 271 (537)
..+|+|+|+.|||||||++.+.+..+ ....|+.|. ....+.+++ ...+.+||++|++.++..+..++..
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~------- 82 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRG------- 82 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTT-------
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhc-------
Confidence 46799999999999999999998766 345677773 345566665 3689999999999888766665554
Q ss_pred CCCccceeeEEee-cCcccccCCcccc
Q psy16304 272 RPDSRTCQVYLIM-CGVHQVSGIPDEL 297 (537)
Q Consensus 272 ~~~~~~~il~v~D-s~~~~~~~l~~~l 297 (537)
++++++++| ++...+..+..++
T Consensus 83 ----~d~~i~v~d~~~~~s~~~~~~~~ 105 (186)
T 2bme_A 83 ----AAGALLVYDITSRETYNALTNWL 105 (186)
T ss_dssp ----CSEEEEEEETTCHHHHHTHHHHH
T ss_pred ----CCEEEEEEECcCHHHHHHHHHHH
Confidence 899999999 6555555444433
No 114
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=98.78 E-value=8.5e-09 Score=95.76 Aligned_cols=91 Identities=22% Similarity=0.373 Sum_probs=69.3
Q ss_pred CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee--eEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304 196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN--RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG 271 (537)
Q Consensus 196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t--~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l 271 (537)
..+|+|+|+.|||||||++.|.+..+ ..+.|+.|.+ ...+.+++ ...+.+||++|++.++..+..++..
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~------- 87 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRG------- 87 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTT-------
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhcc-------
Confidence 46799999999999999999998766 4566777744 34556665 4789999999998887777666665
Q ss_pred CCCccceeeEEee-cCcccccCCcccc
Q psy16304 272 RPDSRTCQVYLIM-CGVHQVSGIPDEL 297 (537)
Q Consensus 272 ~~~~~~~il~v~D-s~~~~~~~l~~~l 297 (537)
++++++++| ++...+..+..++
T Consensus 88 ----~d~ii~v~d~~~~~s~~~~~~~~ 110 (195)
T 1x3s_A 88 ----AQGVILVYDVTRRDTFVKLDNWL 110 (195)
T ss_dssp ----CCEEEEEEETTCHHHHHTHHHHH
T ss_pred ----CCEEEEEEECcCHHHHHHHHHHH
Confidence 899999999 5555554444433
No 115
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=98.78 E-value=6.7e-09 Score=97.10 Aligned_cols=91 Identities=22% Similarity=0.352 Sum_probs=69.1
Q ss_pred CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeeeE--EEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304 196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNRA--RVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG 271 (537)
Q Consensus 196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~~--~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l 271 (537)
..+|+|+|+.|+|||||++.|.+..+ ..+.|+.|.+.. .+.+++ ...+.+||++|+++++..+..++..
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~------- 95 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRG------- 95 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTT-------
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhcc-------
Confidence 46799999999999999999998876 467788885543 344443 5789999999998887776666665
Q ss_pred CCCccceeeEEee-cCcccccCCcccc
Q psy16304 272 RPDSRTCQVYLIM-CGVHQVSGIPDEL 297 (537)
Q Consensus 272 ~~~~~~~il~v~D-s~~~~~~~l~~~l 297 (537)
++++++++| ++...+..+..++
T Consensus 96 ----~d~iilV~d~~~~~s~~~~~~~~ 118 (192)
T 2fg5_A 96 ----SAAAVIVYDITKQDSFYTLKKWV 118 (192)
T ss_dssp ----CSEEEEEEETTCTHHHHHHHHHH
T ss_pred ----CCEEEEEEeCCCHHHHHHHHHHH
Confidence 889999999 5555444444333
No 116
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=98.77 E-value=9.6e-09 Score=93.87 Aligned_cols=90 Identities=19% Similarity=0.370 Sum_probs=65.3
Q ss_pred CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee--eEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304 196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN--RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG 271 (537)
Q Consensus 196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t--~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l 271 (537)
-.+++++|+.|||||||++.+.+..+ ....|+.|.+ ...+.+++ ...+.+||++|++.++..+..++..
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~------- 79 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRG------- 79 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTT-------
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhc-------
Confidence 35799999999999999999998765 4456777744 34556665 3689999999999888777666555
Q ss_pred CCCccceeeEEee-cCcccccCCccc
Q psy16304 272 RPDSRTCQVYLIM-CGVHQVSGIPDE 296 (537)
Q Consensus 272 ~~~~~~~il~v~D-s~~~~~~~l~~~ 296 (537)
++++++++| ++...+..+..+
T Consensus 80 ----~~~~i~v~d~~~~~s~~~~~~~ 101 (177)
T 1wms_A 80 ----SDCCLLTFSVDDSQSFQNLSNW 101 (177)
T ss_dssp ----CSEEEEEEETTCHHHHHTHHHH
T ss_pred ----CCEEEEEEECcCHHHHHHHHHH
Confidence 889999999 555544444433
No 117
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=98.77 E-value=7.9e-09 Score=93.34 Aligned_cols=89 Identities=16% Similarity=0.260 Sum_probs=67.2
Q ss_pred CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee--eEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304 196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN--RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG 271 (537)
Q Consensus 196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t--~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l 271 (537)
..+++++|+.|+|||||++.+.+..+ ....|+.|.+ ...+.+++ +..+.+||++|++.++..+..++..
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~------- 78 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRG------- 78 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTT-------
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccC-------
Confidence 35799999999999999999998665 3456777744 34555664 5789999999998888777776665
Q ss_pred CCCccceeeEEee-cCcccccCCcc
Q psy16304 272 RPDSRTCQVYLIM-CGVHQVSGIPD 295 (537)
Q Consensus 272 ~~~~~~~il~v~D-s~~~~~~~l~~ 295 (537)
++++++++| ++...+..+..
T Consensus 79 ----~d~~i~v~d~~~~~s~~~~~~ 99 (170)
T 1r2q_A 79 ----AQAAIVVYDITNEESFARAKN 99 (170)
T ss_dssp ----CSEEEEEEETTCHHHHHHHHH
T ss_pred ----CCEEEEEEECCCHHHHHHHHH
Confidence 899999999 55544443333
No 118
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.77 E-value=1.5e-08 Score=91.75 Aligned_cols=91 Identities=18% Similarity=0.264 Sum_probs=67.9
Q ss_pred CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee-eEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304 196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN-RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR 272 (537)
Q Consensus 196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t-~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~ 272 (537)
..+++++|+.|||||||++.+.+..+ ..+.|+.|.+ ...+..++ ...+.+||++|+.+++..+..++..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~-------- 74 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISK-------- 74 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHH--------
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccc--------
Confidence 35799999999999999999998765 3455666633 34445554 4678999999999888777777776
Q ss_pred CCccceeeEEee-cCcccccCCcccc
Q psy16304 273 PDSRTCQVYLIM-CGVHQVSGIPDEL 297 (537)
Q Consensus 273 ~~~~~~il~v~D-s~~~~~~~l~~~l 297 (537)
++++++++| ++...++.+..++
T Consensus 75 ---~~~~i~v~d~~~~~~~~~~~~~~ 97 (172)
T 2erx_A 75 ---GHAFILVYSITSRQSLEELKPIY 97 (172)
T ss_dssp ---CSEEEEEEETTCHHHHHTTHHHH
T ss_pred ---CCEEEEEEECcCHHHHHHHHHHH
Confidence 899999999 6555555444433
No 119
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=98.76 E-value=7.5e-09 Score=93.63 Aligned_cols=89 Identities=24% Similarity=0.398 Sum_probs=67.3
Q ss_pred CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee--EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304 196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR--ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG 271 (537)
Q Consensus 196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~--~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l 271 (537)
..+++++|+.|+|||||++.+.+..+ ..+.|+.|.+. ..+.+.+ ...+.+||++|++.++..+..++..
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~------- 78 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRG------- 78 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTT-------
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcC-------
Confidence 35799999999999999999999875 45678888443 4455554 4789999999998887766666665
Q ss_pred CCCccceeeEEee-cCcccccCCcc
Q psy16304 272 RPDSRTCQVYLIM-CGVHQVSGIPD 295 (537)
Q Consensus 272 ~~~~~~~il~v~D-s~~~~~~~l~~ 295 (537)
++++++++| ++...+..+..
T Consensus 79 ----~~~~i~v~d~~~~~s~~~~~~ 99 (170)
T 1z0j_A 79 ----SAAAIIVYDITKEETFSTLKN 99 (170)
T ss_dssp ----CSEEEEEEETTCHHHHHHHHH
T ss_pred ----CCEEEEEEECcCHHHHHHHHH
Confidence 889999999 55544443333
No 120
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=98.76 E-value=2.2e-09 Score=100.82 Aligned_cols=92 Identities=20% Similarity=0.257 Sum_probs=45.6
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCC--CC-ccccCcee--eeeEEEEECC---cEEEEEeecCCCchhhHHHHhhhhccc
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGE--PI-ISLVPTVG--FNRARVEYGN---KYEVFLYDLGGSEDFRTIWKQYLGTVS 266 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~--~~-~~~~Pt~G--~t~~~i~i~g---~~~i~~~D~~G~~~~r~~~~~~i~~v~ 266 (537)
...+|+|+|+.|+|||||++.|.+. .+ ..+.||.| +....+.+++ .+.+.+||++|++.++..+..++..
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~-- 96 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNG-- 96 (208)
T ss_dssp EEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCC--
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhh--
Confidence 3468999999999999999999987 55 45678877 5556777776 5799999999998877665555444
Q ss_pred cCCCCCCCccceeeEEee-cCcccccCCcccc
Q psy16304 267 QTPLGRPDSRTCQVYLIM-CGVHQVSGIPDEL 297 (537)
Q Consensus 267 Q~~~l~~~~~~~il~v~D-s~~~~~~~l~~~l 297 (537)
++++++++| ++...+..+..++
T Consensus 97 ---------~d~~i~v~d~~~~~s~~~~~~~~ 119 (208)
T 2yc2_C 97 ---------VYYAILVFDVSSMESFESCKAWF 119 (208)
T ss_dssp ---------CCEEEEEEETTCHHHHHHHHHHH
T ss_pred ---------CcEEEEEEECCCHHHHHHHHHHH
Confidence 899999999 5555444444433
No 121
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=98.76 E-value=7.6e-09 Score=97.29 Aligned_cols=93 Identities=22% Similarity=0.298 Sum_probs=64.9
Q ss_pred CCCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee--eEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCC
Q psy16304 194 FRSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN--RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTP 269 (537)
Q Consensus 194 ~~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t--~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~ 269 (537)
.+..+|+|+|+.|+|||||++.+.+..+ ..+.|+.|.+ ...+.+++ ...+.+||++|++.++..+..++..
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~----- 100 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRK----- 100 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHH-----
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhh-----
Confidence 3567899999999999999999998766 4566787743 45566665 4779999999999888877777776
Q ss_pred CCCCCccceeeEEee-cCcccccCCcccc
Q psy16304 270 LGRPDSRTCQVYLIM-CGVHQVSGIPDEL 297 (537)
Q Consensus 270 ~l~~~~~~~il~v~D-s~~~~~~~l~~~l 297 (537)
++++++++| ++...+..+..++
T Consensus 101 ------~d~iilv~d~~~~~s~~~~~~~~ 123 (199)
T 2p5s_A 101 ------ADGVLLLYDVTCEKSFLNIREWV 123 (199)
T ss_dssp ------CSEEEEEEETTCHHHHHTHHHHH
T ss_pred ------CCEEEEEEECCChHHHHHHHHHH
Confidence 899999999 5555555444433
No 122
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=98.75 E-value=8.4e-09 Score=95.96 Aligned_cols=90 Identities=21% Similarity=0.348 Sum_probs=67.1
Q ss_pred CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee--EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304 197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR--ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR 272 (537)
Q Consensus 197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~--~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~ 272 (537)
.+|+|+|+.|+|||||++.|++..+ ..+.|+.|.+. ..+.+++ ...+.+||++|++.++..+..++..
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~-------- 94 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRG-------- 94 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTT--------
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccC--------
Confidence 5799999999999999999998876 44567777443 4455554 5789999999998777655555554
Q ss_pred CCccceeeEEee-cCcccccCCcccc
Q psy16304 273 PDSRTCQVYLIM-CGVHQVSGIPDEL 297 (537)
Q Consensus 273 ~~~~~~il~v~D-s~~~~~~~l~~~l 297 (537)
++++++++| ++...+..+..++
T Consensus 95 ---~d~ii~v~d~~~~~s~~~~~~~~ 117 (189)
T 2gf9_A 95 ---AMGFLLMYDIANQESFAAVQDWA 117 (189)
T ss_dssp ---CSEEEEEEETTCHHHHHTHHHHH
T ss_pred ---CCEEEEEEECCCHHHHHHHHHHH
Confidence 889999999 5555555444433
No 123
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.75 E-value=9.3e-09 Score=94.21 Aligned_cols=91 Identities=19% Similarity=0.376 Sum_probs=61.1
Q ss_pred CCeEEEEeCCCCcHHHHHHHHhCCCCc--cccCceeeee--EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCC
Q psy16304 196 SVPILVLGLDNAGKSSIIKRILGEPII--SLVPTVGFNR--ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL 270 (537)
Q Consensus 196 G~~vgLVG~NGAGKSTLL~~L~G~~~~--~~~Pt~G~t~--~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~ 270 (537)
..+++++|+.|+|||||++.+.+..+. .+.|+.|.+. ..+.+++ ...+.+||++|++.++..+..++..
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~------ 83 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRD------ 83 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGG------
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccC------
Confidence 467999999999999999999987662 4567777443 3345565 3689999999998877666555554
Q ss_pred CCCCccceeeEEee-cCcccccCCcccc
Q psy16304 271 GRPDSRTCQVYLIM-CGVHQVSGIPDEL 297 (537)
Q Consensus 271 l~~~~~~~il~v~D-s~~~~~~~l~~~l 297 (537)
++++++++| ++...+..+..++
T Consensus 84 -----~d~ii~v~d~~~~~s~~~~~~~~ 106 (180)
T 2g6b_A 84 -----AHALLLLYDVTNKASFDNIQAWL 106 (180)
T ss_dssp -----CSEEEEEEETTCHHHHHTHHHHH
T ss_pred -----CCEEEEEEECCCHHHHHHHHHHH
Confidence 899999999 5555544444433
No 124
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=98.75 E-value=1.1e-08 Score=93.29 Aligned_cols=90 Identities=16% Similarity=0.275 Sum_probs=69.0
Q ss_pred CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee--eEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304 196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN--RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG 271 (537)
Q Consensus 196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t--~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l 271 (537)
-.+++++|+.|+|||||++.|.+..+ ..+.++.|.+ ...+.+++ ...+.+||++|++.++..+..++..
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~------- 87 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRG------- 87 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHT-------
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhcc-------
Confidence 46799999999999999999998766 4456777743 44555665 4789999999998888777777776
Q ss_pred CCCccceeeEEee-cCcccccCCccc
Q psy16304 272 RPDSRTCQVYLIM-CGVHQVSGIPDE 296 (537)
Q Consensus 272 ~~~~~~~il~v~D-s~~~~~~~l~~~ 296 (537)
++++++++| ++...+..+..+
T Consensus 88 ----~d~~i~v~d~~~~~s~~~~~~~ 109 (179)
T 1z0f_A 88 ----AAGALMVYDITRRSTYNHLSSW 109 (179)
T ss_dssp ----CSEEEEEEETTCHHHHHTHHHH
T ss_pred ----CCEEEEEEeCcCHHHHHHHHHH
Confidence 899999999 555544444433
No 125
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=98.75 E-value=7.6e-09 Score=93.40 Aligned_cols=89 Identities=24% Similarity=0.408 Sum_probs=66.6
Q ss_pred CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee--eeeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304 196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG 271 (537)
Q Consensus 196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G--~t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l 271 (537)
..+++++|+.|||||||++.|.+..+ ..+.|+.| +....+.+++ ...+.+||++|+..++..+..++..
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~------- 77 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRG------- 77 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTT-------
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcC-------
Confidence 35799999999999999999998766 44567777 3345566665 4789999999998777666666555
Q ss_pred CCCccceeeEEee-cCcccccCCcc
Q psy16304 272 RPDSRTCQVYLIM-CGVHQVSGIPD 295 (537)
Q Consensus 272 ~~~~~~~il~v~D-s~~~~~~~l~~ 295 (537)
++++++++| ++...++.+..
T Consensus 78 ----~d~~i~v~d~~~~~s~~~~~~ 98 (168)
T 1z2a_A 78 ----AQACVLVFSTTDRESFEAISS 98 (168)
T ss_dssp ----CCEEEEEEETTCHHHHHTHHH
T ss_pred ----CCEEEEEEECcCHHHHHHHHH
Confidence 899999999 55544444443
No 126
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.74 E-value=9.2e-09 Score=114.14 Aligned_cols=60 Identities=23% Similarity=0.256 Sum_probs=39.6
Q ss_pred EEEEeCCCCcHHHHHHHHhCCCCccccC-ceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304 199 ILVLGLDNAGKSSIIKRILGEPIISLVP-TVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG 271 (537)
Q Consensus 199 vgLVG~NGAGKSTLL~~L~G~~~~~~~P-t~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l 271 (537)
+||||+||||||||+++|+|. ..| ++| .+.+.| ..+..........++ ..+++++|+..+
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl----~~P~~sG----~vt~~g-~~i~~~~~~~~~~~~----~~i~~v~Q~~~l 108 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGV----ALPRGSG----IVTRCP-LVLKLKKLVNEDKWR----GKVSYQDYEIEI 108 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSC----C-----------CCCSC-EEEEEEECSSSSCCE----EEESCC---CCC
T ss_pred EEEECCCCChHHHHHHHHhCC----CCCCCCC----eEEEcC-EEEEEecCCccccce----eEEeeecccccC
Confidence 999999999999999999999 888 799 888887 766555543333333 678999988663
No 127
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=98.74 E-value=1.1e-08 Score=95.04 Aligned_cols=91 Identities=22% Similarity=0.415 Sum_probs=68.7
Q ss_pred CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee--eeeEEEEECC-cEEEEEeecCCCchhh-HHHHhhhhccccCCC
Q psy16304 196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEYGN-KYEVFLYDLGGSEDFR-TIWKQYLGTVSQTPL 270 (537)
Q Consensus 196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G--~t~~~i~i~g-~~~i~~~D~~G~~~~r-~~~~~~i~~v~Q~~~ 270 (537)
-.+|+|+|+.|||||||++.|.+..+ ....|+.| +....+.+++ ...+.+||++|+++++ ..+..++..
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~------ 93 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRN------ 93 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTT------
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcC------
Confidence 46899999999999999999998766 34567777 3445666665 4789999999998877 666666655
Q ss_pred CCCCccceeeEEee-cCcccccCCcccc
Q psy16304 271 GRPDSRTCQVYLIM-CGVHQVSGIPDEL 297 (537)
Q Consensus 271 l~~~~~~~il~v~D-s~~~~~~~l~~~l 297 (537)
++++++++| ++...+..+..++
T Consensus 94 -----~d~iilv~D~~~~~s~~~~~~~~ 116 (189)
T 1z06_A 94 -----VHAVVFVYDMTNMASFHSLPAWI 116 (189)
T ss_dssp -----CCEEEEEEETTCHHHHHTHHHHH
T ss_pred -----CCEEEEEEECcCHHHHHHHHHHH
Confidence 899999999 6555554444433
No 128
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.74 E-value=1.3e-08 Score=94.85 Aligned_cols=92 Identities=14% Similarity=0.247 Sum_probs=68.7
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee-EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG 271 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~-~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l 271 (537)
+..+|+|+|++|||||||++.|.+..+ ..+.|+.|.+. ..+.+++ ...+.+||++|+..++..+..++..
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~------- 79 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISK------- 79 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHH-------
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhcc-------
Confidence 456899999999999999999998765 34557766333 3444554 4689999999998888777777776
Q ss_pred CCCccceeeEEee-cCcccccCCcccc
Q psy16304 272 RPDSRTCQVYLIM-CGVHQVSGIPDEL 297 (537)
Q Consensus 272 ~~~~~~~il~v~D-s~~~~~~~l~~~l 297 (537)
++++++++| ++...+..+..++
T Consensus 80 ----~d~~i~v~d~~~~~s~~~~~~~~ 102 (199)
T 2gf0_A 80 ----GHAFILVFSVTSKQSLEELGPIY 102 (199)
T ss_dssp ----CSEEEEEEETTCHHHHHTTHHHH
T ss_pred ----CCEEEEEEECcCHHHHHHHHHHH
Confidence 899999999 5555555444433
No 129
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=98.74 E-value=1.3e-08 Score=94.06 Aligned_cols=91 Identities=20% Similarity=0.312 Sum_probs=68.0
Q ss_pred CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee---EEEEECC----------cEEEEEeecCCCchhhHHHHhh
Q psy16304 196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR---ARVEYGN----------KYEVFLYDLGGSEDFRTIWKQY 261 (537)
Q Consensus 196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~---~~i~i~g----------~~~i~~~D~~G~~~~r~~~~~~ 261 (537)
-.+|+|+|+.|+|||||++.|.+..+ ....|+.|.+. ..+.+++ ...+.+||++|++.++..+..+
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~ 90 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTAF 90 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHHHT
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHHHHH
Confidence 36799999999999999999998765 44567777443 3444553 3789999999999888777666
Q ss_pred hhccccCCCCCCCccceeeEEee-cCcccccCCcccc
Q psy16304 262 LGTVSQTPLGRPDSRTCQVYLIM-CGVHQVSGIPDEL 297 (537)
Q Consensus 262 i~~v~Q~~~l~~~~~~~il~v~D-s~~~~~~~l~~~l 297 (537)
+.. ++++++++| ++...+..+..++
T Consensus 91 ~~~-----------~d~~i~v~d~~~~~s~~~~~~~~ 116 (195)
T 3bc1_A 91 FRD-----------AMGFLLLFDLTNEQSFLNVRNWI 116 (195)
T ss_dssp TTT-----------CSEEEEEEETTCHHHHHTHHHHH
T ss_pred HcC-----------CCEEEEEEECCCHHHHHHHHHHH
Confidence 655 899999999 5555554444433
No 130
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=98.74 E-value=9.6e-09 Score=95.26 Aligned_cols=88 Identities=19% Similarity=0.250 Sum_probs=64.8
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee-EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG 271 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~-~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l 271 (537)
...+++++|++|+|||||++.+.+..+ ..+.||.|... ..+.+++ .+.+.+||++|++.++..+..++..
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~------- 78 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPD------- 78 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTT-------
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCC-------
Confidence 346799999999999999999998766 44678877333 2344544 5789999999998776555544443
Q ss_pred CCCccceeeEEee-cCcccccCC
Q psy16304 272 RPDSRTCQVYLIM-CGVHQVSGI 293 (537)
Q Consensus 272 ~~~~~~~il~v~D-s~~~~~~~l 293 (537)
++++++++| ++...+..+
T Consensus 79 ----~~~~i~v~d~~~~~s~~~~ 97 (184)
T 1m7b_A 79 ----SDAVLICFDISRPETLDSV 97 (184)
T ss_dssp ----CSEEEEEEETTCHHHHHHH
T ss_pred ----CcEEEEEEECCCHHHHHHH
Confidence 889999999 655554443
No 131
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=98.74 E-value=1.1e-08 Score=95.76 Aligned_cols=90 Identities=20% Similarity=0.374 Sum_probs=65.6
Q ss_pred CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceee--eeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304 196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGF--NRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG 271 (537)
Q Consensus 196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~--t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l 271 (537)
..+|+|+|+.|+|||||++.|.+..+ ....|+.|. ....+.+++ .+.+.+||++|++.++..+..++..
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~------- 98 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRS------- 98 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHH-------
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcC-------
Confidence 45799999999999999999999866 345677763 345566665 4689999999999888888777776
Q ss_pred CCCccceeeEEee-cCcccccCCccc
Q psy16304 272 RPDSRTCQVYLIM-CGVHQVSGIPDE 296 (537)
Q Consensus 272 ~~~~~~~il~v~D-s~~~~~~~l~~~ 296 (537)
++++++++| ++...+..+..+
T Consensus 99 ----~d~iilV~D~~~~~s~~~~~~~ 120 (192)
T 2il1_A 99 ----AKGIILVYDITKKETFDDLPKW 120 (192)
T ss_dssp ----CSEEEEEEETTCHHHHHTHHHH
T ss_pred ----CCEEEEEEECcCHHHHHHHHHH
Confidence 899999999 655555544443
No 132
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=98.74 E-value=1.2e-08 Score=91.82 Aligned_cols=88 Identities=18% Similarity=0.287 Sum_probs=65.8
Q ss_pred CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee-eEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304 196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN-RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR 272 (537)
Q Consensus 196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t-~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~ 272 (537)
..+++++|++|||||||++.+.+..+ ..+.|+.|.. ...+.+++ ...+.+||++|++.++..+..++..
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~-------- 74 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKN-------- 74 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHH--------
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhcc--------
Confidence 35799999999999999999997665 4455666622 34556665 3568999999998888777777766
Q ss_pred CCccceeeEEee-cCcccccCCc
Q psy16304 273 PDSRTCQVYLIM-CGVHQVSGIP 294 (537)
Q Consensus 273 ~~~~~~il~v~D-s~~~~~~~l~ 294 (537)
++++++++| ++...+..+.
T Consensus 75 ---~~~~i~v~d~~~~~s~~~~~ 94 (167)
T 1kao_A 75 ---GQGFILVYSLVNQQSFQDIK 94 (167)
T ss_dssp ---CSEEEEEEETTCHHHHHHHH
T ss_pred ---CCEEEEEEeCCCHHHHHHHH
Confidence 889999999 5554443333
No 133
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=98.74 E-value=9.5e-09 Score=92.46 Aligned_cols=88 Identities=16% Similarity=0.299 Sum_probs=64.4
Q ss_pred CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee-EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304 197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP 273 (537)
Q Consensus 197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~-~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~ 273 (537)
.+++++|+.|||||||++.+.+..+ ..+.|+.|... ..+.+++ ...+.+||++|+.+++..+..++..
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~--------- 75 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRS--------- 75 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHH---------
T ss_pred EEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhc---------
Confidence 5799999999999999999998765 45567777433 3455665 3689999999998888877777776
Q ss_pred CccceeeEEee-cCcccccCCcc
Q psy16304 274 DSRTCQVYLIM-CGVHQVSGIPD 295 (537)
Q Consensus 274 ~~~~~il~v~D-s~~~~~~~l~~ 295 (537)
++++++++| ++...+..+..
T Consensus 76 --~d~~i~v~d~~~~~s~~~~~~ 96 (168)
T 1u8z_A 76 --GEGFLCVFSITEMESFAATAD 96 (168)
T ss_dssp --CSEEEEEEETTCHHHHHHHHH
T ss_pred --CCEEEEEEECCCHHHHHHHHH
Confidence 899999999 55554444433
No 134
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=98.74 E-value=1.3e-08 Score=94.89 Aligned_cols=90 Identities=14% Similarity=0.236 Sum_probs=67.1
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeeeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR 272 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~ 272 (537)
+..+|+|+|++|||||||++.+++..+ ..+.||.|.....+.+++ .+.+.+||++|++.++ ++..
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~-------- 85 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAW-------- 85 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHH--------
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEEEEEEEECCCChhhh-----eecC--------
Confidence 457899999999999999999888766 446788775556777776 4678889999998765 3333
Q ss_pred CCccceeeEEee-cCcccccCCccccccc
Q psy16304 273 PDSRTCQVYLIM-CGVHQVSGIPDELTSA 300 (537)
Q Consensus 273 ~~~~~~il~v~D-s~~~~~~~l~~~l~~~ 300 (537)
++++++++| ++...+..+..++..+
T Consensus 86 ---~~~~i~v~d~~~~~s~~~~~~~~~~i 111 (184)
T 3ihw_A 86 ---VDAVVFVFSLEDEISFQTVYNYFLRL 111 (184)
T ss_dssp ---CSEEEEEEETTCHHHHHHHHHHHHHH
T ss_pred ---CCEEEEEEECcCHHHHHHHHHHHHHH
Confidence 789999999 6666555554444433
No 135
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=98.74 E-value=9e-09 Score=92.82 Aligned_cols=90 Identities=18% Similarity=0.246 Sum_probs=67.4
Q ss_pred CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee-EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304 197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP 273 (537)
Q Consensus 197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~-~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~ 273 (537)
.+++++|+.|||||||++.+.+..+ ..+.|+.|... ..+.+++ ...+.+||++|+..++..+..++..
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~--------- 74 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKN--------- 74 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHH---------
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhcc---------
Confidence 5799999999999999999998766 45667777433 2344443 5789999999998888777777776
Q ss_pred CccceeeEEee-cCcccccCCcccc
Q psy16304 274 DSRTCQVYLIM-CGVHQVSGIPDEL 297 (537)
Q Consensus 274 ~~~~~il~v~D-s~~~~~~~l~~~l 297 (537)
++++++++| ++...+..+..++
T Consensus 75 --~d~~i~v~d~~~~~s~~~~~~~~ 97 (167)
T 1c1y_A 75 --GQGFALVYSITAQSTFNDLQDLR 97 (167)
T ss_dssp --CSEEEEEEETTCHHHHHTHHHHH
T ss_pred --CCEEEEEEECCCHHHHHHHHHHH
Confidence 889999999 6555544444433
No 136
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=98.74 E-value=8.6e-09 Score=111.38 Aligned_cols=91 Identities=30% Similarity=0.630 Sum_probs=75.9
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCC
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPD 274 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~ 274 (537)
+..+++|+|.+|||||||++.|++..+....||.|++...+.+.+ +.+.+||++|++.++..+..++..
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~~~T~~~~~~~~~~~~-~~~~l~Dt~G~~~~~~~~~~~~~~---------- 389 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKN-VKFNVWDVGGQDKIRPLWRHYYTG---------- 389 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEESSS-CEEEEEEECCCGGGSGGGGGGGTT----------
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCCCCCcCCccceeEEEEEeCC-EEEEEEECCCcHHHHHHHHHHhcc----------
Confidence 457899999999999999999999887777899998888888876 999999999999888777766665
Q ss_pred ccceeeEEee-cCcccccCCcccc
Q psy16304 275 SRTCQVYLIM-CGVHQVSGIPDEL 297 (537)
Q Consensus 275 ~~~~il~v~D-s~~~~~~~l~~~l 297 (537)
++++++|+| ++..++..+..++
T Consensus 390 -ad~~i~V~D~~~~~s~~~~~~~~ 412 (497)
T 3lvq_E 390 -TQGLIFVVDCADRDRIDEARQEL 412 (497)
T ss_dssp -CCEEEEEEETTCGGGHHHHHHHH
T ss_pred -CCEEEEEEECcchhHHHHHHHHH
Confidence 899999999 6666555444433
No 137
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=98.73 E-value=3.4e-08 Score=90.99 Aligned_cols=83 Identities=16% Similarity=0.284 Sum_probs=57.0
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee----eeeEEEEECCcEEEEEeecCCCchhhHHHH--------hhh
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG----FNRARVEYGNKYEVFLYDLGGSEDFRTIWK--------QYL 262 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G----~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~--------~~i 262 (537)
+|.+++|+|++|||||||++.|++..+....+..| +....+.+++ ..+.+||++|+.+.....+ .++
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG-MPLHIIDTAGLREASDEVERIGIERAWQEI 81 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT-EEEEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECC-eEEEEEECCCcccchhHHHHHHHHHHHHHH
Confidence 68899999999999999999999975433333333 2345677776 8899999999864221111 122
Q ss_pred hccccCCCCCCCccceeeEEee-cCccc
Q psy16304 263 GTVSQTPLGRPDSRTCQVYLIM-CGVHQ 289 (537)
Q Consensus 263 ~~v~Q~~~l~~~~~~~il~v~D-s~~~~ 289 (537)
.. ++++++++| ++...
T Consensus 82 ~~-----------ad~~i~v~D~~~~~s 98 (172)
T 2gj8_A 82 EQ-----------ADRVLFMVDGTTTDA 98 (172)
T ss_dssp HT-----------CSEEEEEEETTTCCC
T ss_pred Hh-----------CCEEEEEEECCCCCC
Confidence 22 789999999 55443
No 138
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=98.73 E-value=1.4e-08 Score=96.63 Aligned_cols=91 Identities=21% Similarity=0.390 Sum_probs=68.3
Q ss_pred CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee--eEEEEECC-----------cEEEEEeecCCCchhhHHHHhh
Q psy16304 196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN--RARVEYGN-----------KYEVFLYDLGGSEDFRTIWKQY 261 (537)
Q Consensus 196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t--~~~i~i~g-----------~~~i~~~D~~G~~~~r~~~~~~ 261 (537)
-.+|+|+|+.|||||||++.|.+..+ ..+.|+.|.. ...+.+++ ...+.+||++|++.++..+..+
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~ 104 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAF 104 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHHHH
Confidence 35799999999999999999999766 3456777733 34455553 3789999999998888777777
Q ss_pred hhccccCCCCCCCccceeeEEee-cCcccccCCcccc
Q psy16304 262 LGTVSQTPLGRPDSRTCQVYLIM-CGVHQVSGIPDEL 297 (537)
Q Consensus 262 i~~v~Q~~~l~~~~~~~il~v~D-s~~~~~~~l~~~l 297 (537)
+.. ++++++++| ++...+..+..++
T Consensus 105 ~~~-----------~d~iilV~D~~~~~s~~~~~~~l 130 (217)
T 2f7s_A 105 FRD-----------AMGFLLMFDLTSQQSFLNVRNWM 130 (217)
T ss_dssp HTT-----------CCEEEEEEETTCHHHHHHHHHHH
T ss_pred hcC-----------CCEEEEEEECcCHHHHHHHHHHH
Confidence 766 899999999 5555544444433
No 139
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=98.73 E-value=1.2e-08 Score=92.94 Aligned_cols=89 Identities=13% Similarity=0.121 Sum_probs=57.1
Q ss_pred CeEEEEeCCCCcHHHHHHHHhCCCCccccCceeee--eEEEEECC-cEEEEEeecCCCch--hhHHHHhhhhccccCCCC
Q psy16304 197 VPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN--RARVEYGN-KYEVFLYDLGGSED--FRTIWKQYLGTVSQTPLG 271 (537)
Q Consensus 197 ~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t--~~~i~i~g-~~~i~~~D~~G~~~--~r~~~~~~i~~v~Q~~~l 271 (537)
.+++|+|++|+|||||++.|.+..+....++.|++ ...+.+++ ...+.+||++|+.. .+.+...++..
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~------- 77 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQG------- 77 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTS-------
T ss_pred EEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhccc-------
Confidence 57999999999999999999998776556677744 34566665 36889999999876 33333333333
Q ss_pred CCCccceeeEEee-cCcccccCCccc
Q psy16304 272 RPDSRTCQVYLIM-CGVHQVSGIPDE 296 (537)
Q Consensus 272 ~~~~~~~il~v~D-s~~~~~~~l~~~ 296 (537)
++++++++| ++...+..+..+
T Consensus 78 ----~~~~i~v~d~~~~~s~~~~~~~ 99 (175)
T 2nzj_A 78 ----GSAYVIVYSIADRGSFESASEL 99 (175)
T ss_dssp ----CSEEEEEEETTCHHHHHHHHHH
T ss_pred ----CCEEEEEEECCCHHHHHHHHHH
Confidence 788999999 655554444433
No 140
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=98.73 E-value=1.2e-08 Score=93.45 Aligned_cols=89 Identities=17% Similarity=0.293 Sum_probs=66.8
Q ss_pred CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee--eeeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304 196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG 271 (537)
Q Consensus 196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G--~t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l 271 (537)
..+++++|+.|+|||||++.+.+..+ ....++.| +....+.+++ ...+.+||++|+..++..+..++..
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~------- 84 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG------- 84 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTT-------
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhcc-------
Confidence 46799999999999999999998766 33457777 3344566665 4789999999998887777666665
Q ss_pred CCCccceeeEEee-cCcccccCCcc
Q psy16304 272 RPDSRTCQVYLIM-CGVHQVSGIPD 295 (537)
Q Consensus 272 ~~~~~~~il~v~D-s~~~~~~~l~~ 295 (537)
++++++++| ++...++.+..
T Consensus 85 ----~d~~i~v~d~~~~~s~~~~~~ 105 (181)
T 2efe_B 85 ----AAAAIIVFDVTNQASFERAKK 105 (181)
T ss_dssp ----CSEEEEEEETTCHHHHHHHHH
T ss_pred ----CCEEEEEEECCCHHHHHHHHH
Confidence 889999999 55544443333
No 141
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=98.72 E-value=1.4e-08 Score=92.65 Aligned_cols=90 Identities=21% Similarity=0.368 Sum_probs=67.4
Q ss_pred CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee--eeeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304 196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG 271 (537)
Q Consensus 196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G--~t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l 271 (537)
..+++++|+.|+|||||++.+.+..+ ....|+.| +....+.+++ ...+.+||++|++.++..+..++..
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~------- 86 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD------- 86 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHT-------
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcC-------
Confidence 36799999999999999999998765 34567766 3345566665 3689999999998887777766665
Q ss_pred CCCccceeeEEee-cCcccccCCccc
Q psy16304 272 RPDSRTCQVYLIM-CGVHQVSGIPDE 296 (537)
Q Consensus 272 ~~~~~~~il~v~D-s~~~~~~~l~~~ 296 (537)
++++++++| ++...+..+..+
T Consensus 87 ----~d~~i~v~d~~~~~s~~~~~~~ 108 (179)
T 2y8e_A 87 ----STVAVVVYDITNTNSFHQTSKW 108 (179)
T ss_dssp ----CSEEEEEEETTCHHHHHTHHHH
T ss_pred ----CCEEEEEEECCCHHHHHHHHHH
Confidence 889999999 555444444433
No 142
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=98.72 E-value=6.8e-09 Score=93.92 Aligned_cols=90 Identities=24% Similarity=0.420 Sum_probs=62.0
Q ss_pred CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee--eeeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304 197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR 272 (537)
Q Consensus 197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G--~t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~ 272 (537)
.+++++|+.|+|||||++.+.+..+ ....|+.| +....+.+++ ...+.+||++|++.++..+..++..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~-------- 75 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRG-------- 75 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTT--------
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhcc--------
Confidence 4799999999999999999998766 44567776 3344556655 4789999999998777666666555
Q ss_pred CCccceeeEEee-cCcccccCCcccc
Q psy16304 273 PDSRTCQVYLIM-CGVHQVSGIPDEL 297 (537)
Q Consensus 273 ~~~~~~il~v~D-s~~~~~~~l~~~l 297 (537)
++++++++| ++...+..+..++
T Consensus 76 ---~d~~i~v~d~~~~~s~~~~~~~~ 98 (170)
T 1g16_A 76 ---AMGIILVYDITDERTFTNIKQWF 98 (170)
T ss_dssp ---EEEEEEEEETTCHHHHHTHHHHH
T ss_pred ---CCEEEEEEECCCHHHHHHHHHHH
Confidence 889999999 5555444444433
No 143
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=98.72 E-value=8.3e-09 Score=94.36 Aligned_cols=90 Identities=24% Similarity=0.375 Sum_probs=64.7
Q ss_pred CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee--eeeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304 196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG 271 (537)
Q Consensus 196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G--~t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l 271 (537)
-.+|+++|++|||||||++.|.+..+ ....|+.| +....+.+++ ...+.+||++|++.++..+..++..
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~------- 81 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRG------- 81 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTT-------
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhcc-------
Confidence 36799999999999999999999866 34566766 3345566665 3789999999988776555555444
Q ss_pred CCCccceeeEEee-cCcccccCCccc
Q psy16304 272 RPDSRTCQVYLIM-CGVHQVSGIPDE 296 (537)
Q Consensus 272 ~~~~~~~il~v~D-s~~~~~~~l~~~ 296 (537)
++++++++| ++...+..+..+
T Consensus 82 ----~d~~i~v~d~~~~~s~~~~~~~ 103 (181)
T 3tw8_B 82 ----THGVIVVYDVTSAESFVNVKRW 103 (181)
T ss_dssp ----CSEEEEEEETTCHHHHHHHHHH
T ss_pred ----CCEEEEEEECCCHHHHHHHHHH
Confidence 889999999 555544444333
No 144
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=98.72 E-value=6.9e-09 Score=94.02 Aligned_cols=89 Identities=17% Similarity=0.321 Sum_probs=59.4
Q ss_pred CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceee--eeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304 196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGF--NRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG 271 (537)
Q Consensus 196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~--t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l 271 (537)
-.+++++|++|+|||||++.+.+..+ ....|+.|. ....+.+++ .+.+.+||++|+++++..+..++.
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~-------- 77 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYR-------- 77 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSST--------
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhc--------
Confidence 35799999999999999999998766 345677773 334566654 468899999998876654443333
Q ss_pred CCCccceeeEEee-cCcccccCCcc
Q psy16304 272 RPDSRTCQVYLIM-CGVHQVSGIPD 295 (537)
Q Consensus 272 ~~~~~~~il~v~D-s~~~~~~~l~~ 295 (537)
.++++++++| ++...+..+..
T Consensus 78 ---~~d~~i~v~d~~~~~s~~~~~~ 99 (170)
T 1z08_A 78 ---DSNGAILVYDITDEDSFQKVKN 99 (170)
T ss_dssp ---TCSEEEEEEETTCHHHHHHHHH
T ss_pred ---cCCEEEEEEECcCHHHHHHHHH
Confidence 3889999999 55544444433
No 145
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=98.72 E-value=8.6e-09 Score=97.25 Aligned_cols=89 Identities=22% Similarity=0.388 Sum_probs=66.1
Q ss_pred CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee--eeeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304 196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG 271 (537)
Q Consensus 196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G--~t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l 271 (537)
-.+|+|+|+.|||||||++.|.+..+ ..+.|+.| +....+.+++ .+.+.+||++|++.++..+..++..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~------- 80 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRG------- 80 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTT-------
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccC-------
Confidence 35799999999999999999998766 34567777 3345666765 4689999999998777655555544
Q ss_pred CCCccceeeEEee-cCcccccCCcc
Q psy16304 272 RPDSRTCQVYLIM-CGVHQVSGIPD 295 (537)
Q Consensus 272 ~~~~~~~il~v~D-s~~~~~~~l~~ 295 (537)
++++++++| ++...+..+..
T Consensus 81 ----~d~vilv~d~~~~~s~~~~~~ 101 (206)
T 2bcg_Y 81 ----SHGIIIVYDVTDQESFNGVKM 101 (206)
T ss_dssp ----CSEEEEEEETTCHHHHHHHHH
T ss_pred ----CCEEEEEEECcCHHHHHHHHH
Confidence 889999999 55544443333
No 146
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=98.72 E-value=1.2e-08 Score=97.53 Aligned_cols=94 Identities=17% Similarity=0.211 Sum_probs=68.9
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeeeE-EEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNRA-RVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG 271 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~~-~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l 271 (537)
+..+|+|+|++|+|||||++.+.+..+ ..+.||.|.+.. .+.+++ .+.+.+||++|++.++..+..++..
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~------- 98 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSD------- 98 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTT-------
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCC-------
Confidence 467899999999999999999998776 456788885432 334443 4789999999998887666665554
Q ss_pred CCCccceeeEEee-cCcccccC-Ccccccc
Q psy16304 272 RPDSRTCQVYLIM-CGVHQVSG-IPDELTS 299 (537)
Q Consensus 272 ~~~~~~~il~v~D-s~~~~~~~-l~~~l~~ 299 (537)
++++++++| ++...+.. +..++..
T Consensus 99 ----~d~~i~v~d~~~~~s~~~~~~~~~~~ 124 (214)
T 3q3j_B 99 ----SDAVLLCFDISRPETVDSALKKWRTE 124 (214)
T ss_dssp ----CSEEEEEEETTCTHHHHHHHTHHHHH
T ss_pred ----CeEEEEEEECcCHHHHHHHHHHHHHH
Confidence 899999999 66655554 3444433
No 147
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=98.72 E-value=1.3e-08 Score=94.61 Aligned_cols=91 Identities=21% Similarity=0.348 Sum_probs=68.8
Q ss_pred CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceee--eeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304 196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGF--NRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG 271 (537)
Q Consensus 196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~--t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l 271 (537)
-.+|+|+|+.|||||||++.|.+..+ ....|+.|. ....+.+++ .+.+.+||++|++.++..+..++..
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~------- 88 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRG------- 88 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTT-------
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhh-------
Confidence 35799999999999999999998765 345577663 345566665 3689999999998888777777665
Q ss_pred CCCccceeeEEee-cCcccccCCcccc
Q psy16304 272 RPDSRTCQVYLIM-CGVHQVSGIPDEL 297 (537)
Q Consensus 272 ~~~~~~~il~v~D-s~~~~~~~l~~~l 297 (537)
++++++++| ++...+..+..++
T Consensus 89 ----~d~~i~v~d~~~~~s~~~~~~~~ 111 (196)
T 3tkl_A 89 ----AHGIIVVYDVTDQESFNNVKQWL 111 (196)
T ss_dssp ----CSEEEEEEETTCHHHHHTHHHHH
T ss_pred ----CCEEEEEEECcCHHHHHHHHHHH
Confidence 899999999 6655555444443
No 148
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=98.71 E-value=1.1e-08 Score=104.00 Aligned_cols=91 Identities=16% Similarity=0.207 Sum_probs=68.1
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCC--c--cccCceeeeeEEEEECCcEEEEEeecCCCchh-----hHHHHhhhhcc
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPI--I--SLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF-----RTIWKQYLGTV 265 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~--~--~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~-----r~~~~~~i~~v 265 (537)
.+.+++|+|++|||||||++.+.+... . .+.+|.|.....+.++++..+.+||++|++.+ +..+..++..
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~- 80 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQM- 80 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTT-
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhcc-
Confidence 356899999999999999999888632 1 34577776666777766799999999999877 3444455444
Q ss_pred ccCCCCCCCccceeeEEee-cCcccccCCccc
Q psy16304 266 SQTPLGRPDSRTCQVYLIM-CGVHQVSGIPDE 296 (537)
Q Consensus 266 ~Q~~~l~~~~~~~il~v~D-s~~~~~~~l~~~ 296 (537)
++++++++| ++...++++..+
T Consensus 81 ----------ad~vi~V~D~t~~~s~~~l~~~ 102 (307)
T 3r7w_A 81 ----------VQVLIHVFDVESTEVLKDIEIF 102 (307)
T ss_dssp ----------CSEEEEEEETTCSCHHHHHHHH
T ss_pred ----------CCEEEEEEECCChhhHHHHHHH
Confidence 899999999 666555544433
No 149
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=98.71 E-value=8.1e-09 Score=96.35 Aligned_cols=92 Identities=15% Similarity=0.171 Sum_probs=64.1
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee-EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG 271 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~-~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l 271 (537)
+..+|+|+|+.|+|||||++.+.+..+ ..+.||.|... ..+.+++ .+.+.+||++|++.++.+ ..++..
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~------- 91 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNW------- 91 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTT-------
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhh-------
Confidence 457899999999999999999998766 55678888332 3445554 478899999999876543 344444
Q ss_pred CCCccceeeEEee-cCcccccCCccccc
Q psy16304 272 RPDSRTCQVYLIM-CGVHQVSGIPDELT 298 (537)
Q Consensus 272 ~~~~~~~il~v~D-s~~~~~~~l~~~l~ 298 (537)
++++++++| ++...+..+..++.
T Consensus 92 ----~~~~ilv~d~~~~~s~~~~~~~~~ 115 (187)
T 3c5c_A 92 ----AHAFLVVYSVDSRQSFDSSSSYLE 115 (187)
T ss_dssp ----CSEEEEEEETTCHHHHHHHHHHHH
T ss_pred ----CCEEEEEEECCCHHHHHHHHHHHH
Confidence 889999999 66655555544443
No 150
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=98.71 E-value=1.5e-08 Score=95.11 Aligned_cols=90 Identities=17% Similarity=0.306 Sum_probs=68.4
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee-eEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN-RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG 271 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t-~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l 271 (537)
+..+|+|+|+.|||||||++.+.+..+ ..+.|+.|.. ...+.+++ .+.+.+||++|+..++..+..++..
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~------- 85 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRS------- 85 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHH-------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhh-------
Confidence 346799999999999999999998765 4566777743 24455665 3689999999999888877777776
Q ss_pred CCCccceeeEEee-cCcccccCCcc
Q psy16304 272 RPDSRTCQVYLIM-CGVHQVSGIPD 295 (537)
Q Consensus 272 ~~~~~~~il~v~D-s~~~~~~~l~~ 295 (537)
++++++++| ++...+..+..
T Consensus 86 ----~~~~i~v~d~~~~~s~~~~~~ 106 (206)
T 2bov_A 86 ----GEGFLCVFSITEMESFAATAD 106 (206)
T ss_dssp ----CSEEEEEEETTCHHHHHHHHH
T ss_pred ----CCEEEEEEECCCHHHHHHHHH
Confidence 889999999 55544444433
No 151
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=98.71 E-value=1.3e-08 Score=93.95 Aligned_cols=89 Identities=19% Similarity=0.319 Sum_probs=62.9
Q ss_pred CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee-eEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304 196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN-RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR 272 (537)
Q Consensus 196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t-~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~ 272 (537)
..+|+++|+.|||||||++.|.+..+ ..+.++.+.. ...+.+++ ...+.+||++|++.++..+..++..
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~-------- 75 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT-------- 75 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHH--------
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhc--------
Confidence 35799999999999999999998765 4455666522 33455555 3568889999999888777777776
Q ss_pred CCccceeeEEee-cCcccccCCcc
Q psy16304 273 PDSRTCQVYLIM-CGVHQVSGIPD 295 (537)
Q Consensus 273 ~~~~~~il~v~D-s~~~~~~~l~~ 295 (537)
++++++++| ++...+..+..
T Consensus 76 ---~~~~i~v~d~~~~~s~~~~~~ 96 (189)
T 4dsu_A 76 ---GEGFLCVFAINNTKSFEDIHH 96 (189)
T ss_dssp ---CSEEEEEEETTCHHHHHHHHH
T ss_pred ---CCEEEEEEECCCHHHHHHHHH
Confidence 899999999 55544443333
No 152
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=98.70 E-value=1.4e-08 Score=96.68 Aligned_cols=88 Identities=19% Similarity=0.250 Sum_probs=65.4
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee-EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG 271 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~-~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l 271 (537)
...+|+|+|++|+|||||++.+++..+ ..+.||.|... ..+.+++ .+.+.+||++|++.++..+..++..
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~------- 99 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPD------- 99 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTT-------
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccC-------
Confidence 346899999999999999999999876 44578887433 2344554 5789999999998776555544443
Q ss_pred CCCccceeeEEee-cCcccccCC
Q psy16304 272 RPDSRTCQVYLIM-CGVHQVSGI 293 (537)
Q Consensus 272 ~~~~~~~il~v~D-s~~~~~~~l 293 (537)
++++++++| ++...+..+
T Consensus 100 ----~d~~ilv~D~~~~~s~~~~ 118 (205)
T 1gwn_A 100 ----SDAVLICFDISRPETLDSV 118 (205)
T ss_dssp ----CSEEEEEEETTCHHHHHHH
T ss_pred ----CCEEEEEEECCCHHHHHHH
Confidence 889999999 655554443
No 153
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=98.70 E-value=1e-08 Score=95.63 Aligned_cols=91 Identities=18% Similarity=0.292 Sum_probs=65.5
Q ss_pred CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee--eeeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304 196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG 271 (537)
Q Consensus 196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G--~t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l 271 (537)
..+|+|+|+.|||||||++.|.+..+ ....|+.| +....+.+++ .+.+.+||++|++.++..+..++..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~------- 93 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRG------- 93 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTT-------
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhcc-------
Confidence 46799999999999999999998766 34456777 3345666665 4789999999998877666666655
Q ss_pred CCCccceeeEEee-cCcccccCCcccc
Q psy16304 272 RPDSRTCQVYLIM-CGVHQVSGIPDEL 297 (537)
Q Consensus 272 ~~~~~~~il~v~D-s~~~~~~~l~~~l 297 (537)
++++++++| ++...+..+..++
T Consensus 94 ----~d~ii~v~d~~~~~s~~~~~~~l 116 (191)
T 2a5j_A 94 ----AAGALLVYDITRRETFNHLTSWL 116 (191)
T ss_dssp ----CSEEEEEEETTCHHHHHTHHHHH
T ss_pred ----CCEEEEEEECCCHHHHHHHHHHH
Confidence 899999999 5555555444433
No 154
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=98.70 E-value=1.1e-08 Score=96.50 Aligned_cols=91 Identities=20% Similarity=0.362 Sum_probs=60.9
Q ss_pred CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee--eeeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304 196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG 271 (537)
Q Consensus 196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G--~t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l 271 (537)
..+|+|+|+.|||||||++.|.+..+ ....|+.| +....+.+++ ...+.+||++|+..++..+..++..
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~------- 97 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRG------- 97 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTT-------
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhcc-------
Confidence 46799999999999999999998766 34567777 3345566665 4789999999988776666665555
Q ss_pred CCCccceeeEEee-cCcccccCCcccc
Q psy16304 272 RPDSRTCQVYLIM-CGVHQVSGIPDEL 297 (537)
Q Consensus 272 ~~~~~~~il~v~D-s~~~~~~~l~~~l 297 (537)
++++++++| ++...+..+..++
T Consensus 98 ----~d~~i~v~d~~~~~s~~~~~~~~ 120 (200)
T 2o52_A 98 ----AAGALLVYDITSRETYNSLAAWL 120 (200)
T ss_dssp ----CSEEEEEEETTCHHHHHTHHHHH
T ss_pred ----CCEEEEEEECcCHHHHHHHHHHH
Confidence 899999999 6655555444433
No 155
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.69 E-value=1.3e-09 Score=119.01 Aligned_cols=155 Identities=9% Similarity=-0.046 Sum_probs=84.8
Q ss_pred cccc-cCCCCCeEEEEeCCCCcHHHHHHH--HhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhc
Q psy16304 188 HLSL-FDFRSVPILVLGLDNAGKSSIIKR--ILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGT 264 (537)
Q Consensus 188 ~~~l-~~~~G~~vgLVG~NGAGKSTLL~~--L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~ 264 (537)
.+++ .+.+|+.++|+|+||||||||+++ +.|. ..|+.| .+.+.+ .+. .... ......+++
T Consensus 30 ~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl----~~~~~g----~i~v~g------~~~--~~~~-~~~~~~~g~ 92 (525)
T 1tf7_A 30 DISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGI----IEFDEP----GVFVTF------EET--PQDI-IKNARSFGW 92 (525)
T ss_dssp HHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHH----HHHCCC----EEEEES------SSC--HHHH-HHHHGGGTC
T ss_pred HhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHH----HhCCCC----EEEEEE------eCC--HHHH-HHHHHHcCC
Confidence 3456 677999999999999999999999 6798 778888 776655 111 0111 122356899
Q ss_pred cccCCCCCCCccceeeEEeecCcccccCCcccccccCcCCccccCCccEEEeccCccCccchhhhhcCCCceeeeccccc
Q psy16304 265 VSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGF 344 (537)
Q Consensus 265 v~Q~~~l~~~~~~~il~v~Ds~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~l 344 (537)
++|++.... . +...+.... ......+..+|+... ....+.+||+|+++++ .+
T Consensus 93 ~~q~~~~~~----~-l~~~~~~~~------------------~~~~~~l~~~~l~~~-~~~~~~~LS~g~~~~l----il 144 (525)
T 1tf7_A 93 DLAKLVDEG----K-LFILDASPD------------------PEGQEVVGGFDLSAL-IERINYAIQKYRARRV----SI 144 (525)
T ss_dssp CHHHHHHTT----S-EEEEECCCC------------------SSCCSCCSSHHHHHH-HHHHHHHHHHHTCSEE----EE
T ss_pred ChHHhhccC----c-EEEEecCcc------------------cchhhhhcccCHHHH-HHHHHHHHHHcCCCEE----EE
Confidence 999765211 1 111120000 000111223454443 3455788999888777 55
Q ss_pred ccceeccCCceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEeCCCcch
Q psy16304 345 NRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSHSLSGRP 393 (537)
Q Consensus 345 a~all~~~e~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvdshd~~~ 393 (537)
+......+ . .-+|......+..+.+.+.+. +.+++++ +|+...
T Consensus 145 De~t~~~~---~-~~lD~~~~~~l~~ll~~l~~~-g~tvl~i-tH~~~~ 187 (525)
T 1tf7_A 145 DSVTSVFQ---Q-YDASSVVRRELFRLVARLKQI-GATTVMT-TERIEE 187 (525)
T ss_dssp ECSTTTST---T-TCCHHHHHHHHHHHHHHHHHH-TCEEEEE-EECSSS
T ss_pred CCHHHHHH---h-cCCHHHHHHHHHHHHHHHHHC-CCEEEEE-ecCCCC
Confidence 44443211 1 012333334444444555444 3445554 566554
No 156
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=98.69 E-value=1.8e-08 Score=92.57 Aligned_cols=87 Identities=17% Similarity=0.230 Sum_probs=62.7
Q ss_pred CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee-eEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304 196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN-RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR 272 (537)
Q Consensus 196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t-~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~ 272 (537)
..+++++|++|+|||||++.+.+..+ ..+.|+.|.. ...+.+++ .+.+.+||++|++.++..+..++..
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~-------- 76 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQ-------- 76 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTT--------
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccC--------
Confidence 46799999999999999999997655 4456666622 23455554 4677899999998777555554443
Q ss_pred CCccceeeEEee-cCcccccCC
Q psy16304 273 PDSRTCQVYLIM-CGVHQVSGI 293 (537)
Q Consensus 273 ~~~~~~il~v~D-s~~~~~~~l 293 (537)
++++++++| ++...+..+
T Consensus 77 ---~d~~i~v~d~~~~~s~~~~ 95 (186)
T 1mh1_A 77 ---TDVSLICFSLVSPASFENV 95 (186)
T ss_dssp ---CSEEEEEEETTCHHHHHHH
T ss_pred ---CcEEEEEEECCChhhHHHH
Confidence 899999999 555444433
No 157
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=98.68 E-value=1.6e-08 Score=94.87 Aligned_cols=88 Identities=17% Similarity=0.212 Sum_probs=60.9
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee-EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG 271 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~-~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l 271 (537)
+..+|+++|+.|+|||||++.+.+..+ ..+.||.|... ..+.+++ .+.+.+||++|++.++..+..++..
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~------- 91 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTN------- 91 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTT-------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCC-------
Confidence 567899999999999999999998766 45667777333 3455555 3678899999998777665555544
Q ss_pred CCCccceeeEEee-cCcccccCC
Q psy16304 272 RPDSRTCQVYLIM-CGVHQVSGI 293 (537)
Q Consensus 272 ~~~~~~~il~v~D-s~~~~~~~l 293 (537)
++++++++| ++...+..+
T Consensus 92 ----~~~~i~v~d~~~~~s~~~~ 110 (201)
T 2q3h_A 92 ----TDIFLLCFSVVSPSSFQNV 110 (201)
T ss_dssp ----CSEEEEEEETTCHHHHHHH
T ss_pred ----CcEEEEEEECCCHHHHHHH
Confidence 889999999 655554443
No 158
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=98.68 E-value=1.1e-08 Score=94.17 Aligned_cols=90 Identities=19% Similarity=0.236 Sum_probs=65.1
Q ss_pred CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee-EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304 196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR 272 (537)
Q Consensus 196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~-~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~ 272 (537)
-.+|+|+|++|||||||++.+.+..+ ..+.|+.|.+. ..+.+++ .+.+.+||++|++.++..+..++..
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~-------- 77 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSID-------- 77 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTT--------
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhc--------
Confidence 35799999999999999999996555 55678888443 3445554 3678999999998776555444444
Q ss_pred CCccceeeEEee-cCcccccCCccc
Q psy16304 273 PDSRTCQVYLIM-CGVHQVSGIPDE 296 (537)
Q Consensus 273 ~~~~~~il~v~D-s~~~~~~~l~~~ 296 (537)
++++++++| ++...++.+..+
T Consensus 78 ---~~~~i~v~d~~~~~s~~~~~~~ 99 (181)
T 3t5g_A 78 ---INGYILVYSVTSIKSFEVIKVI 99 (181)
T ss_dssp ---CSEEEEEEETTCHHHHHHHHHH
T ss_pred ---CCEEEEEEECCCHHHHHHHHHH
Confidence 889999999 655554444433
No 159
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.68 E-value=2.1e-08 Score=93.85 Aligned_cols=92 Identities=15% Similarity=0.154 Sum_probs=69.0
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee-EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG 271 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~-~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l 271 (537)
+..+|+|+|+.|+|||||++.+.+..+ ..+.|+.|... ..+.+++ ...+.+||++|+.. +..+..++..
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~------- 98 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRW------- 98 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHH-------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhcc-------
Confidence 567899999999999999999998766 45667777443 2355565 47899999999887 5566666666
Q ss_pred CCCccceeeEEee-cCcccccCCccccc
Q psy16304 272 RPDSRTCQVYLIM-CGVHQVSGIPDELT 298 (537)
Q Consensus 272 ~~~~~~~il~v~D-s~~~~~~~l~~~l~ 298 (537)
++++++++| ++...++.+..++.
T Consensus 99 ----~d~iilv~D~~~~~s~~~~~~~~~ 122 (196)
T 2atv_A 99 ----GEGFVLVYDITDRGSFEEVLPLKN 122 (196)
T ss_dssp ----CSEEEEEEETTCHHHHHTHHHHHH
T ss_pred ----CCEEEEEEECcCHHHHHHHHHHHH
Confidence 899999999 66665555544443
No 160
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=98.68 E-value=1.5e-08 Score=94.21 Aligned_cols=88 Identities=23% Similarity=0.381 Sum_probs=65.8
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee--eeeEEEEECC-c------------------------------
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEYGN-K------------------------------ 240 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G--~t~~~i~i~g-~------------------------------ 240 (537)
+..+|+|+|+.|||||||++.|.+..+ ..+.|+.| +....+.+++ .
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNN 85 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------C
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccccc
Confidence 457899999999999999999999866 44567777 3344455543 2
Q ss_pred -------EEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEee-cCcccccCC
Q psy16304 241 -------YEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIM-CGVHQVSGI 293 (537)
Q Consensus 241 -------~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~D-s~~~~~~~l 293 (537)
..+.+||++|++.+...+..++.. ++++++++| ++...+..+
T Consensus 86 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~-----------~d~~i~v~D~~~~~s~~~~ 135 (208)
T 3clv_A 86 YNENLCNIKFDIWDTAGQERYASIVPLYYRG-----------ATCAIVVFDISNSNTLDRA 135 (208)
T ss_dssp CCTTTCEEEEEEEECTTGGGCTTTHHHHHTT-----------CSEEEEEEETTCHHHHHHH
T ss_pred ccCccceeEEEEEECCCcHHHHHHHHHHhcC-----------CCEEEEEEECCCHHHHHHH
Confidence 789999999998877766666665 889999999 554443333
No 161
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=98.68 E-value=1.6e-08 Score=92.48 Aligned_cols=90 Identities=14% Similarity=0.229 Sum_probs=67.4
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee-EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG 271 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~-~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l 271 (537)
+..+++++|+.|||||||++.|.+..+ ..+.|+.|... ..+.+++ ...+.+||++|+++++..+..++..
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~------- 80 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRA------- 80 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHH-------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhh-------
Confidence 346799999999999999999998765 45667777332 3455665 3688999999998887777777666
Q ss_pred CCCccceeeEEee-cCcccccCCcc
Q psy16304 272 RPDSRTCQVYLIM-CGVHQVSGIPD 295 (537)
Q Consensus 272 ~~~~~~~il~v~D-s~~~~~~~l~~ 295 (537)
++++++++| ++...+..+..
T Consensus 81 ----~d~~i~v~d~~~~~s~~~~~~ 101 (181)
T 2fn4_A 81 ----GHGFLLVFAINDRQSFNEVGK 101 (181)
T ss_dssp ----CSEEEEEEETTCHHHHHHHHH
T ss_pred ----CCEEEEEEeCCCHHHHHHHHH
Confidence 889999999 55544443333
No 162
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=98.67 E-value=1.9e-08 Score=92.47 Aligned_cols=89 Identities=16% Similarity=0.287 Sum_probs=67.7
Q ss_pred CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee-EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304 196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR 272 (537)
Q Consensus 196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~-~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~ 272 (537)
..+|+|+|+.|||||||++.|.+..+ ..+.++.|... ..+.+++ .+.+.+||++|+..++..+..++..
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~-------- 89 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRS-------- 89 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHH--------
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhcc--------
Confidence 46799999999999999999998766 44567777433 3455665 3689999999999888887777776
Q ss_pred CCccceeeEEee-cCcccccCCcc
Q psy16304 273 PDSRTCQVYLIM-CGVHQVSGIPD 295 (537)
Q Consensus 273 ~~~~~~il~v~D-s~~~~~~~l~~ 295 (537)
++++++++| ++...+..+..
T Consensus 90 ---~d~~i~v~d~~~~~s~~~~~~ 110 (187)
T 2a9k_A 90 ---GEGFLCVFSITEMESFAATAD 110 (187)
T ss_dssp ---CSEEEEEEETTCHHHHHHHHH
T ss_pred ---CCEEEEEEECcCHHHHHHHHH
Confidence 899999999 55544444433
No 163
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=98.67 E-value=1.1e-08 Score=95.03 Aligned_cols=89 Identities=13% Similarity=0.274 Sum_probs=57.9
Q ss_pred CeEEEEeCCCCcHHHHHHHHhCC--CC-ccccCceeeeeEEEEEC------CcEEEEEeecCCCchhhHHHHhhhhcccc
Q psy16304 197 VPILVLGLDNAGKSSIIKRILGE--PI-ISLVPTVGFNRARVEYG------NKYEVFLYDLGGSEDFRTIWKQYLGTVSQ 267 (537)
Q Consensus 197 ~~vgLVG~NGAGKSTLL~~L~G~--~~-~~~~Pt~G~t~~~i~i~------g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q 267 (537)
.+++|+|++|||||||++.+++. .+ ..+.||.|.......+. ..+.+.+||++|+++++..+..++..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~--- 79 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQ--- 79 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHH---
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccC---
Confidence 47999999999999999999995 33 34567888554443321 24788999999998877666666555
Q ss_pred CCCCCCCccceeeEEee-cCc-ccccCCccc
Q psy16304 268 TPLGRPDSRTCQVYLIM-CGV-HQVSGIPDE 296 (537)
Q Consensus 268 ~~~l~~~~~~~il~v~D-s~~-~~~~~l~~~ 296 (537)
++++++++| ++. ..+..+..+
T Consensus 80 --------~~~~i~v~d~~~~~~s~~~~~~~ 102 (184)
T 2zej_A 80 --------RALYLAVYDLSKGQAEVDAMKPW 102 (184)
T ss_dssp --------SEEEEEEEEGGGCHHHHHTHHHH
T ss_pred --------CcEEEEEEeCCcchhHHHHHHHH
Confidence 777888999 554 234444433
No 164
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=98.67 E-value=4.9e-09 Score=96.62 Aligned_cols=90 Identities=20% Similarity=0.377 Sum_probs=45.7
Q ss_pred CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee--eeeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304 196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG 271 (537)
Q Consensus 196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G--~t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l 271 (537)
..+|+|+|+.|+|||||++.+.+..+ ..+.|+.| +....+.+++ ...+.+||++|++.++..+..++..
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~------- 80 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG------- 80 (183)
T ss_dssp EEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTT-------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhc-------
Confidence 36799999999999999999998765 34567777 3345566665 4789999999998776544444433
Q ss_pred CCCccceeeEEee-cCcccccCCccc
Q psy16304 272 RPDSRTCQVYLIM-CGVHQVSGIPDE 296 (537)
Q Consensus 272 ~~~~~~~il~v~D-s~~~~~~~l~~~ 296 (537)
++++++++| ++...+..+..+
T Consensus 81 ----~d~~i~v~d~~~~~s~~~~~~~ 102 (183)
T 2fu5_C 81 ----AMGIMLVYDITNEKSFDNIRNW 102 (183)
T ss_dssp ----CSEEEEEEETTCHHHHHHHHHH
T ss_pred ----CCEEEEEEECcCHHHHHHHHHH
Confidence 899999999 555544444433
No 165
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=98.67 E-value=1.3e-08 Score=95.71 Aligned_cols=89 Identities=16% Similarity=0.328 Sum_probs=64.5
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee--eEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCC
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN--RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL 270 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t--~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~ 270 (537)
+..+|+|+|+.|||||||++.|.+..+ ..+.|+.|.+ ...+.+++ .+.+.+||++|+..++..+..++..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~------ 80 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRG------ 80 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTT------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhC------
Confidence 346799999999999999999998766 4556777743 33455554 4789999999988776544444443
Q ss_pred CCCCccceeeEEee-cCcccccCCc
Q psy16304 271 GRPDSRTCQVYLIM-CGVHQVSGIP 294 (537)
Q Consensus 271 l~~~~~~~il~v~D-s~~~~~~~l~ 294 (537)
++++++++| ++...+..+.
T Consensus 81 -----~d~~i~v~d~~~~~s~~~~~ 100 (207)
T 1vg8_A 81 -----ADCCVLVFDVTAPNTFKTLD 100 (207)
T ss_dssp -----CSEEEEEEETTCHHHHHTHH
T ss_pred -----CcEEEEEEECCCHHHHHHHH
Confidence 889999999 5554444443
No 166
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=98.67 E-value=2e-08 Score=92.53 Aligned_cols=92 Identities=17% Similarity=0.202 Sum_probs=68.6
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee-eEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN-RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG 271 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t-~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l 271 (537)
+..+|+|+|+.|+|||||++.+.+..+ ..+.|+.|.. ...+.+++ .+.+.+||++|++.++..+..++..
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~------- 89 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT------- 89 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHH-------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhc-------
Confidence 356899999999999999999998765 4566777633 33445554 3567789999998888777777776
Q ss_pred CCCccceeeEEee-cCcccccCCcccc
Q psy16304 272 RPDSRTCQVYLIM-CGVHQVSGIPDEL 297 (537)
Q Consensus 272 ~~~~~~~il~v~D-s~~~~~~~l~~~l 297 (537)
++++++++| ++...+..+..++
T Consensus 90 ----~d~~i~v~d~~~~~s~~~~~~~~ 112 (183)
T 3kkq_A 90 ----GDGFLIVYSVTDKASFEHVDRFH 112 (183)
T ss_dssp ----CSEEEEEEETTCHHHHHTHHHHH
T ss_pred ----CCEEEEEEECCCHHHHHHHHHHH
Confidence 899999999 6655555554443
No 167
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.67 E-value=6.3e-08 Score=98.16 Aligned_cols=23 Identities=26% Similarity=0.518 Sum_probs=20.3
Q ss_pred CeEEEEeCCCCcHHHHHHHHhCC
Q psy16304 197 VPILVLGLDNAGKSSIIKRILGE 219 (537)
Q Consensus 197 ~~vgLVG~NGAGKSTLL~~L~G~ 219 (537)
.+++|||+||||||||+++|.|.
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC-
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 45699999999999999999985
No 168
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.66 E-value=9.5e-09 Score=95.85 Aligned_cols=93 Identities=22% Similarity=0.330 Sum_probs=70.2
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee--EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCC
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR--ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL 270 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~--~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~ 270 (537)
.-.+|+|+|+.|+|||||++.+.+..+ ..+.|+.|++. ..+.+++ ++.+.+||++|++.++..+..++..
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~------ 95 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRG------ 95 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTT------
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHcc------
Confidence 346899999999999999999998765 44567777433 4444443 5899999999998888777777766
Q ss_pred CCCCccceeeEEee-cCcccccCCccccc
Q psy16304 271 GRPDSRTCQVYLIM-CGVHQVSGIPDELT 298 (537)
Q Consensus 271 l~~~~~~~il~v~D-s~~~~~~~l~~~l~ 298 (537)
++++++++| ++...++.+..++.
T Consensus 96 -----~d~~i~v~d~~~~~s~~~~~~~~~ 119 (191)
T 3dz8_A 96 -----AMGFILMYDITNEESFNAVQDWAT 119 (191)
T ss_dssp -----CCEEEEEEETTCHHHHHTHHHHHH
T ss_pred -----CCEEEEEEECcCHHHHHHHHHHHH
Confidence 899999999 66655555554443
No 169
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=98.66 E-value=1.3e-08 Score=94.55 Aligned_cols=79 Identities=20% Similarity=0.175 Sum_probs=60.1
Q ss_pred CCeEEEEeCCCCcHHHHHHHHhCCCCcc-----------ccCceeeeeEEE---EECC-cEEEEEeecCCCchhhHHHHh
Q psy16304 196 SVPILVLGLDNAGKSSIIKRILGEPIIS-----------LVPTVGFNRARV---EYGN-KYEVFLYDLGGSEDFRTIWKQ 260 (537)
Q Consensus 196 G~~vgLVG~NGAGKSTLL~~L~G~~~~~-----------~~Pt~G~t~~~i---~i~g-~~~i~~~D~~G~~~~r~~~~~ 260 (537)
..+|+|+|++|||||||++.+.|..... ..||.|++.... .+++ .+.+.+||++|++.++..+..
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 93 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRKL 93 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHHHHH
Confidence 4679999999999999999999864333 235666443332 2222 578999999999988888877
Q ss_pred hhhccccCCCCCCCccceeeEEeec
Q psy16304 261 YLGTVSQTPLGRPDSRTCQVYLIMC 285 (537)
Q Consensus 261 ~i~~v~Q~~~l~~~~~~~il~v~Ds 285 (537)
++.. ++++++++|.
T Consensus 94 ~~~~-----------~d~~i~v~D~ 107 (198)
T 3t1o_A 94 ILRG-----------VDGIVFVADS 107 (198)
T ss_dssp HTTT-----------CCEEEEEEEC
T ss_pred HHhc-----------CCEEEEEEEC
Confidence 7766 8999999993
No 170
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=98.66 E-value=1.5e-08 Score=95.93 Aligned_cols=88 Identities=17% Similarity=0.194 Sum_probs=64.7
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee-EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG 271 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~-~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l 271 (537)
+..+++|+|++|+|||||++.+.+..+ ..+.||.|... ..+.+++ .+.+.+||++|++.++..+..++..
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~------- 80 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRG------- 80 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTT-------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccC-------
Confidence 456899999999999999999998766 45667777333 2445554 4789999999998877666555554
Q ss_pred CCCccceeeEEee-cCcccccCC
Q psy16304 272 RPDSRTCQVYLIM-CGVHQVSGI 293 (537)
Q Consensus 272 ~~~~~~~il~v~D-s~~~~~~~l 293 (537)
++++++++| ++...+..+
T Consensus 81 ----~d~~ilv~d~~~~~s~~~~ 99 (212)
T 2j0v_A 81 ----ADIFVLAFSLISKASYENV 99 (212)
T ss_dssp ----CSEEEEEEETTCHHHHHHH
T ss_pred ----CCEEEEEEECCCHHHHHHH
Confidence 899999999 665554443
No 171
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.66 E-value=2e-08 Score=94.87 Aligned_cols=90 Identities=26% Similarity=0.426 Sum_probs=66.9
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee--eeeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCC
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL 270 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G--~t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~ 270 (537)
+..+|+|+|+.|+|||||++.|.+..+ ....|+.| +....+.+++ .+.+.+||++|++.++..+..++..
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~------ 92 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRG------ 92 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTT------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcc------
Confidence 457899999999999999999998766 44567777 3345566665 3689999999998777666666655
Q ss_pred CCCCccceeeEEee-cCcccccCCcc
Q psy16304 271 GRPDSRTCQVYLIM-CGVHQVSGIPD 295 (537)
Q Consensus 271 l~~~~~~~il~v~D-s~~~~~~~l~~ 295 (537)
++++++++| ++...+..+..
T Consensus 93 -----~d~ii~v~d~~~~~s~~~~~~ 113 (213)
T 3cph_A 93 -----AMGIILVYDVTDERTFTNIKQ 113 (213)
T ss_dssp -----CSEEEEEEETTCHHHHHTHHH
T ss_pred -----CCEEEEEEECCCHHHHHHHHH
Confidence 889999999 55544444333
No 172
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.65 E-value=2.2e-08 Score=115.55 Aligned_cols=33 Identities=18% Similarity=0.296 Sum_probs=29.5
Q ss_pred ccccccccCCCCCeEEEEeCCCCcHHHHHHHHh
Q psy16304 185 LPTHLSLFDFRSVPILVLGLDNAGKSSIIKRIL 217 (537)
Q Consensus 185 ~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~ 217 (537)
+++.+++...+|++++|+||||||||||++++.
T Consensus 651 v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 651 IPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp CCEEEEEETTTBCEEEEECCTTSSHHHHHHHHH
T ss_pred ecccceeecCCCeEEEEECCCCCCHHHHHHHHH
Confidence 456778888899999999999999999999993
No 173
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=98.65 E-value=4.9e-08 Score=91.12 Aligned_cols=87 Identities=20% Similarity=0.314 Sum_probs=65.8
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee-EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG 271 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~-~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l 271 (537)
+..+|+|+|++|+|||||++.+++..+ ..+.||.|.+. ..+.+++ .+.+.+||++|++.++..+..++..
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~------- 94 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYAD------- 94 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTT-------
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccC-------
Confidence 356899999999999999999998766 45678888443 3344554 4667999999998887666655554
Q ss_pred CCCccceeeEEee-cCcccccC
Q psy16304 272 RPDSRTCQVYLIM-CGVHQVSG 292 (537)
Q Consensus 272 ~~~~~~~il~v~D-s~~~~~~~ 292 (537)
++++++++| ++...+..
T Consensus 95 ----~d~~i~v~d~~~~~s~~~ 112 (194)
T 3reg_A 95 ----SDVVLLCFAVNNRTSFDN 112 (194)
T ss_dssp ----CSEEEEEEETTCHHHHHH
T ss_pred ----CcEEEEEEECCCHHHHHH
Confidence 899999999 65554444
No 174
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=98.65 E-value=1.8e-08 Score=94.84 Aligned_cols=93 Identities=18% Similarity=0.289 Sum_probs=66.3
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee-EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG 271 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~-~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l 271 (537)
+..+|+|+|+.|||||||++.|.+..+ ..+.|+.|... ..+.+++ .+.+.+||++|++.++..+..++..
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~------- 95 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIG------- 95 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTT-------
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhc-------
Confidence 467899999999999999999998876 45567777443 2222332 5888999999998776555555544
Q ss_pred CCCccceeeEEee-cCcccccCCccccc
Q psy16304 272 RPDSRTCQVYLIM-CGVHQVSGIPDELT 298 (537)
Q Consensus 272 ~~~~~~~il~v~D-s~~~~~~~l~~~l~ 298 (537)
++++++++| ++...+..+..++.
T Consensus 96 ----~d~~i~v~d~~~~~s~~~~~~~~~ 119 (201)
T 3oes_A 96 ----VHGYVLVYSVTSLHSFQVIESLYQ 119 (201)
T ss_dssp ----CCEEEEEEETTCHHHHHHHHHHHH
T ss_pred ----CCEEEEEEeCCCHHHHHHHHHHHH
Confidence 899999999 65555544444433
No 175
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=98.65 E-value=2e-08 Score=103.05 Aligned_cols=89 Identities=29% Similarity=0.634 Sum_probs=68.0
Q ss_pred CCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304 194 FRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP 273 (537)
Q Consensus 194 ~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~ 273 (537)
.+..+|+|+|++|+|||||++.|.+..+....||.|+....+...+ +.+.+||++|++.++..+..++..
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT~~~~~~~~~~~~-~~l~i~Dt~G~~~~~~~~~~~~~~--------- 232 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN-ISFTVWDVGGQDKIRPLWRHYFQN--------- 232 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEEEETTEEEEEEEETT-EEEEEEECC-----CCSHHHHHTT---------
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCcccccceEEEEEecCc-EEEEEEECCCCHhHHHHHHHHhcc---------
Confidence 3566899999999999999999999877556688887777777775 999999999998887777776665
Q ss_pred CccceeeEEee-cCcccccCCc
Q psy16304 274 DSRTCQVYLIM-CGVHQVSGIP 294 (537)
Q Consensus 274 ~~~~~il~v~D-s~~~~~~~l~ 294 (537)
++++++|+| ++...+..+.
T Consensus 233 --ad~vilV~D~~~~~s~~~~~ 252 (329)
T 3o47_A 233 --TQGLIFVVDSNDRERVNEAR 252 (329)
T ss_dssp --EEEEEEEEETTCSSSHHHHH
T ss_pred --CCEEEEEEECCchHHHHHHH
Confidence 899999999 5555544443
No 176
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=98.64 E-value=1.6e-08 Score=92.46 Aligned_cols=92 Identities=18% Similarity=0.334 Sum_probs=57.0
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee--eeeEEEEECC--cEEEEEeecCCCchhhHHHHhhhhccccCC
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEYGN--KYEVFLYDLGGSEDFRTIWKQYLGTVSQTP 269 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G--~t~~~i~i~g--~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~ 269 (537)
+..+|+++|+.|||||||++.+.+..+ ..+.|+.| +....+.+++ ...+.+||++|++.++..+..++..
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~----- 81 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRG----- 81 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTT-----
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhc-----
Confidence 346799999999999999999998765 44567777 3344555552 4789999999988776555444433
Q ss_pred CCCCCccceeeEEee-cCcccccCCcccc
Q psy16304 270 LGRPDSRTCQVYLIM-CGVHQVSGIPDEL 297 (537)
Q Consensus 270 ~l~~~~~~~il~v~D-s~~~~~~~l~~~l 297 (537)
++++++++| ++...+..+..++
T Consensus 82 ------~d~~i~v~d~~~~~s~~~~~~~~ 104 (182)
T 1ky3_A 82 ------ADCCVLVYDVTNASSFENIKSWR 104 (182)
T ss_dssp ------CCEEEEEEETTCHHHHHTHHHHH
T ss_pred ------CCEEEEEEECCChHHHHHHHHHH
Confidence 899999999 5555554444433
No 177
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=98.64 E-value=3.3e-08 Score=93.10 Aligned_cols=92 Identities=16% Similarity=0.218 Sum_probs=65.2
Q ss_pred CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee--eeeEEEEECC-cEEEEEeecCCCchhhH-HHHhhhhccccCCC
Q psy16304 196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEYGN-KYEVFLYDLGGSEDFRT-IWKQYLGTVSQTPL 270 (537)
Q Consensus 196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G--~t~~~i~i~g-~~~i~~~D~~G~~~~r~-~~~~~i~~v~Q~~~ 270 (537)
..+|+|||++|||||||++.++|..+ ....|+.| +....+.+++ .+.+.+||++|++.+.. ++..++..
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~------ 96 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQT------ 96 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHH------
T ss_pred EEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhcc------
Confidence 46899999999999999999987533 12334444 3344566776 46788999999987654 45555555
Q ss_pred CCCCccceeeEEee-cCcccccCCccccc
Q psy16304 271 GRPDSRTCQVYLIM-CGVHQVSGIPDELT 298 (537)
Q Consensus 271 l~~~~~~~il~v~D-s~~~~~~~l~~~l~ 298 (537)
++++++++| ++...+..+..++.
T Consensus 97 -----~d~~ilv~d~~~~~s~~~~~~~~~ 120 (195)
T 3cbq_A 97 -----GDAFLIVFSVTDRRSFSKVPETLL 120 (195)
T ss_dssp -----CSEEEEEEETTCHHHHHTHHHHHH
T ss_pred -----CCEEEEEEECCCHHHHHHHHHHHH
Confidence 889999999 66666655555443
No 178
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=98.63 E-value=3.1e-08 Score=88.68 Aligned_cols=86 Identities=19% Similarity=0.309 Sum_probs=64.0
Q ss_pred CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee-eEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCCC
Q psy16304 197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN-RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRP 273 (537)
Q Consensus 197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t-~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~ 273 (537)
.+++++|+.|||||||++.+.+..+ ....++.+.. ...+.+++ .+.+.+||++|+.+++..+..++..
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~--------- 74 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT--------- 74 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHH---------
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhcc---------
Confidence 4699999999999999999998765 3455666633 33455555 4678999999998877777777766
Q ss_pred CccceeeEEee-cCcccccCC
Q psy16304 274 DSRTCQVYLIM-CGVHQVSGI 293 (537)
Q Consensus 274 ~~~~~il~v~D-s~~~~~~~l 293 (537)
++++++++| ++...+..+
T Consensus 75 --~~~~i~v~d~~~~~~~~~~ 93 (166)
T 2ce2_X 75 --GEGFLCVFAINNTKSFEDI 93 (166)
T ss_dssp --CSEEEEEEETTCHHHHHHH
T ss_pred --CCEEEEEEECCCHHHHHHH
Confidence 889999999 554443333
No 179
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=98.63 E-value=1.6e-08 Score=96.93 Aligned_cols=89 Identities=18% Similarity=0.327 Sum_probs=62.3
Q ss_pred CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee--eeeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304 196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG 271 (537)
Q Consensus 196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G--~t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l 271 (537)
-.+|+|+|+.|+|||||++.|.+..+ ..+.|+.| +....+.+++ .+.+.+||++|++.++..+..++..
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~------- 85 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRG------- 85 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTT-------
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhcc-------
Confidence 35799999999999999999998776 34567777 4445666765 3789999999998776555555444
Q ss_pred CCCccceeeEEee-cCcccccCCcc
Q psy16304 272 RPDSRTCQVYLIM-CGVHQVSGIPD 295 (537)
Q Consensus 272 ~~~~~~~il~v~D-s~~~~~~~l~~ 295 (537)
++++++++| ++...+..+..
T Consensus 86 ----~d~vilV~D~~~~~s~~~~~~ 106 (223)
T 3cpj_B 86 ----AVGALIVYDISKSSSYENCNH 106 (223)
T ss_dssp ----CCEEEEEEC-CCHHHHHHHHH
T ss_pred ----CCEEEEEEeCCCHHHHHHHHH
Confidence 889999999 55554444433
No 180
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.63 E-value=2.1e-08 Score=94.68 Aligned_cols=88 Identities=24% Similarity=0.240 Sum_probs=50.5
Q ss_pred ccCCCCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeeeE--EEEECCcEEEEEeecCCCchh------hHHHHhh
Q psy16304 191 LFDFRSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNRA--RVEYGNKYEVFLYDLGGSEDF------RTIWKQY 261 (537)
Q Consensus 191 l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~~--~i~i~g~~~i~~~D~~G~~~~------r~~~~~~ 261 (537)
+.+.+|.+++|+|+||||||||++.|+|..+ ..+.|+.|.+.. .+.+++ .+.+||++|+... +..++..
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~ 98 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD--GKRLVDLPGYGYAEVPEEMKRKWQRA 98 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET--TEEEEECCCCC------CCHHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC--CEEEEECcCCcccccCHHHHHHHHHH
Confidence 4466899999999999999999999999853 444789995432 233332 4678999997421 1223334
Q ss_pred hhccccCCCCCCCccceeeEEee
Q psy16304 262 LGTVSQTPLGRPDSRTCQVYLIM 284 (537)
Q Consensus 262 i~~v~Q~~~l~~~~~~~il~v~D 284 (537)
++..+|.. ...+.+++++|
T Consensus 99 ~~~~~~~~----~~~~~~~~v~d 117 (210)
T 1pui_A 99 LGEYLEKR----QSLQGLVVLMD 117 (210)
T ss_dssp HHHHHHHC----TTEEEEEEEEE
T ss_pred HHHHHHhh----hcccEEEEEEE
Confidence 44444432 12567778888
No 181
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=98.62 E-value=4.1e-08 Score=88.91 Aligned_cols=90 Identities=16% Similarity=0.208 Sum_probs=56.6
Q ss_pred CeEEEEeCCCCcHHHHHHHHhCCCCc-cc--cCceeeeeEEEEECC-cEEEEEeecCCCchhhH-HHHhhhhccccCCCC
Q psy16304 197 VPILVLGLDNAGKSSIIKRILGEPII-SL--VPTVGFNRARVEYGN-KYEVFLYDLGGSEDFRT-IWKQYLGTVSQTPLG 271 (537)
Q Consensus 197 ~~vgLVG~NGAGKSTLL~~L~G~~~~-~~--~Pt~G~t~~~i~i~g-~~~i~~~D~~G~~~~r~-~~~~~i~~v~Q~~~l 271 (537)
.+++++|++|+|||||++.+++..+. .. .++..+....+.+++ .+.+.+||++|+..++. .+..++..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~------- 75 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQT------- 75 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHH-------
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhcc-------
Confidence 36899999999999999999986542 12 223334555667776 57888999999987654 34444444
Q ss_pred CCCccceeeEEee-cCcccccCCcccc
Q psy16304 272 RPDSRTCQVYLIM-CGVHQVSGIPDEL 297 (537)
Q Consensus 272 ~~~~~~~il~v~D-s~~~~~~~l~~~l 297 (537)
++++++++| ++.+.+..+..++
T Consensus 76 ----~d~~i~v~d~~~~~s~~~~~~~~ 98 (169)
T 3q85_A 76 ----GDAFLIVFSVTDRRSFSKVPETL 98 (169)
T ss_dssp ----CSEEEEEEETTCHHHHHTHHHHH
T ss_pred ----CCEEEEEEECCChHHHHHHHHHH
Confidence 789999999 6665555555444
No 182
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=98.62 E-value=3.6e-08 Score=93.32 Aligned_cols=88 Identities=17% Similarity=0.214 Sum_probs=62.8
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee-eEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN-RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG 271 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t-~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l 271 (537)
+..+|+++|+.|||||||++.+++..+ ..+.|+.+.. ...+.+++ .+.+.+||++|++.++..+..++..
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~------- 101 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQ------- 101 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTT-------
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhcc-------
Confidence 567899999999999999999997655 3456666622 23344554 4677799999998877665555544
Q ss_pred CCCccceeeEEee-cCcccccCC
Q psy16304 272 RPDSRTCQVYLIM-CGVHQVSGI 293 (537)
Q Consensus 272 ~~~~~~~il~v~D-s~~~~~~~l 293 (537)
++++++++| ++...+..+
T Consensus 102 ----~d~~i~v~d~~~~~s~~~~ 120 (204)
T 4gzl_A 102 ----TDVFLICFSLVSPASFENV 120 (204)
T ss_dssp ----CSEEEEEEETTCHHHHHHH
T ss_pred ----CCEEEEEEECCCHHHHHHH
Confidence 899999999 655554443
No 183
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.60 E-value=2.3e-08 Score=107.42 Aligned_cols=71 Identities=14% Similarity=0.166 Sum_probs=50.4
Q ss_pred cccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCc---hhhHH-HHhh
Q psy16304 186 PTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSE---DFRTI-WKQY 261 (537)
Q Consensus 186 ~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~---~~r~~-~~~~ 261 (537)
...+++.+.+|++++|+|+||||||||+++|+|. +.++.| +|.+.+ .|+.... ..+.. .+..
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgl----l~~~~G----~V~l~g------~D~~r~aa~eQL~~~~~r~~ 348 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQ----FEQQGK----SVMLAA------GDTFRAAAVEQLQVWGQRNN 348 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHH----HHHTTC----CEEEEC------CCTTCHHHHHHHHHHHHHHT
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHH----hhhcCC----eEEEec------CcccchhhHHHHHHHHHhcC
Confidence 3456788889999999999999999999999999 888888 666543 2332110 11111 2456
Q ss_pred hhccccCCC
Q psy16304 262 LGTVSQTPL 270 (537)
Q Consensus 262 i~~v~Q~~~ 270 (537)
+++++|...
T Consensus 349 I~vV~Q~~~ 357 (503)
T 2yhs_A 349 IPVIAQHTG 357 (503)
T ss_dssp CCEECCSTT
T ss_pred ceEEecccC
Confidence 788888765
No 184
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=98.60 E-value=1.1e-08 Score=93.90 Aligned_cols=88 Identities=17% Similarity=0.216 Sum_probs=54.0
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeeeE-EEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNRA-RVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG 271 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~~-~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l 271 (537)
+..+++++|+.|+|||||++.+.+..+ ..+.||.|.... .+.+++ .+.+.+||++|+++++..+..++..
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~------- 79 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRG------- 79 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTT-------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccC-------
Confidence 467899999999999999999998765 445677662211 222333 3567799999998877666655554
Q ss_pred CCCccceeeEEee-cCcccccCC
Q psy16304 272 RPDSRTCQVYLIM-CGVHQVSGI 293 (537)
Q Consensus 272 ~~~~~~~il~v~D-s~~~~~~~l 293 (537)
++++++++| ++...+..+
T Consensus 80 ----~d~~i~v~d~~~~~s~~~~ 98 (182)
T 3bwd_D 80 ----ADVFILAFSLISKASYENV 98 (182)
T ss_dssp ----CSEEEEEEETTCHHHHHHH
T ss_pred ----CCEEEEEEECCCHHHHHHH
Confidence 889999999 555544443
No 185
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.60 E-value=3.3e-08 Score=92.11 Aligned_cols=87 Identities=20% Similarity=0.273 Sum_probs=65.0
Q ss_pred CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee-EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304 196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR 272 (537)
Q Consensus 196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~-~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~ 272 (537)
..+++++|+.|+|||||++.+.+..+ ..+.||.|... ..+.+++ .+.+.+||++|+++++..+..++..
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~-------- 89 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPM-------- 89 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTT--------
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCC--------
Confidence 35799999999999999999998766 45667777332 3455554 4789999999998877665555544
Q ss_pred CCccceeeEEee-cCcccccCC
Q psy16304 273 PDSRTCQVYLIM-CGVHQVSGI 293 (537)
Q Consensus 273 ~~~~~~il~v~D-s~~~~~~~l 293 (537)
++++++++| ++...+..+
T Consensus 90 ---~d~~i~v~d~~~~~s~~~~ 108 (194)
T 2atx_A 90 ---TDVFLICFSVVNPASFQNV 108 (194)
T ss_dssp ---CSEEEEEEETTCHHHHHHH
T ss_pred ---CCEEEEEEECCCHHHHHHH
Confidence 899999999 655554444
No 186
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=98.59 E-value=1.5e-07 Score=85.74 Aligned_cols=78 Identities=26% Similarity=0.369 Sum_probs=51.1
Q ss_pred CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee--eeeEEEEECCcEEEEEeecCCCchhh------HHHHhhhhcccc
Q psy16304 197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEYGNKYEVFLYDLGGSEDFR------TIWKQYLGTVSQ 267 (537)
Q Consensus 197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G--~t~~~i~i~g~~~i~~~D~~G~~~~r------~~~~~~i~~v~Q 267 (537)
.+++|+|++|||||||++.|+|..+ ....|+.+ .....+.+++ ..+.+||++|+.+++ .+...++..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~--- 79 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG-EKFKVVDLPGVYSLTANSIDEIIARDYIIN--- 79 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT-EEEEEEECCCCSCSSSSSHHHHHHHHHHHH---
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC-cEEEEEECCCcccCCCcchhHHHHHHHHhc---
Confidence 5799999999999999999999754 22223222 1223566665 899999999987653 222333321
Q ss_pred CCCCCCCccceeeEEee
Q psy16304 268 TPLGRPDSRTCQVYLIM 284 (537)
Q Consensus 268 ~~~l~~~~~~~il~v~D 284 (537)
..++++++++|
T Consensus 80 ------~~~~~~i~v~D 90 (165)
T 2wji_A 80 ------EKPDLVVNIVD 90 (165)
T ss_dssp ------HCCSEEEEEEE
T ss_pred ------CCCCEEEEEec
Confidence 01678888999
No 187
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=98.58 E-value=1.1e-07 Score=90.21 Aligned_cols=79 Identities=20% Similarity=0.325 Sum_probs=59.7
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECC--cEEEEEeecCCCchhhH-HHHhhhhccccCCCC
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGN--KYEVFLYDLGGSEDFRT-IWKQYLGTVSQTPLG 271 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g--~~~i~~~D~~G~~~~r~-~~~~~i~~v~Q~~~l 271 (537)
+..+++|+|+.|+|||||++.+++..+....++.+.....+.+++ +..+.+||++|+..++. ++..++..
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~------- 78 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSS------- 78 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGG-------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHHhh-------
Confidence 457899999999999999999998766333344443444566663 48899999999998876 56666555
Q ss_pred CCCccceeeEEee
Q psy16304 272 RPDSRTCQVYLIM 284 (537)
Q Consensus 272 ~~~~~~~il~v~D 284 (537)
++++++++|
T Consensus 79 ----~~~~i~v~d 87 (214)
T 2fh5_B 79 ----ARAVVFVVD 87 (214)
T ss_dssp ----EEEEEEEEE
T ss_pred ----CCEEEEEEE
Confidence 888999999
No 188
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=98.58 E-value=3.8e-08 Score=91.29 Aligned_cols=89 Identities=18% Similarity=0.286 Sum_probs=56.1
Q ss_pred CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee-eEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304 196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN-RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR 272 (537)
Q Consensus 196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t-~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~ 272 (537)
..+|+++|+.|||||||++.|++..+ ..+.++.+.. ...+.+++ .+.+.+||++|+..+...+..++..
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~-------- 92 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT-------- 92 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTT--------
T ss_pred eeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCc--------
Confidence 36799999999999999999998765 3445666632 23455555 4679999999998776555554444
Q ss_pred CCccceeeEEee-cCcccccCCcc
Q psy16304 273 PDSRTCQVYLIM-CGVHQVSGIPD 295 (537)
Q Consensus 273 ~~~~~~il~v~D-s~~~~~~~l~~ 295 (537)
++++++++| ++...+..+..
T Consensus 93 ---~d~~i~v~d~~~~~s~~~~~~ 113 (190)
T 3con_A 93 ---GEGFLCVFAINNSKSFADINL 113 (190)
T ss_dssp ---CSEEEEEEETTCHHHHHHHHH
T ss_pred ---CCEEEEEEECcCHHHHHHHHH
Confidence 889999999 55544443333
No 189
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=98.58 E-value=6.9e-08 Score=88.18 Aligned_cols=78 Identities=14% Similarity=0.253 Sum_probs=56.5
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCCc-cccCcee--eeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPII-SLVPTVG--FNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG 271 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~-~~~Pt~G--~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l 271 (537)
+..+|+++|++|||||||++.+.+..+. ...|+.+ +....+.+++ ..+.+||++|++.++..+..++
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~Dt~G~~~~~~~~~~~~--------- 76 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVND-KKITFLDTPGHEAFTTMRARGA--------- 76 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETT-EEEEESCCCSSSSSSCSCCSSC---------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCC-ceEEEEECCCCHHHHHHHHHHH---------
Confidence 5788999999999999999999997652 2233332 2334567776 8899999999977664332222
Q ss_pred CCCccceeeEEee
Q psy16304 272 RPDSRTCQVYLIM 284 (537)
Q Consensus 272 ~~~~~~~il~v~D 284 (537)
..++++++++|
T Consensus 77 --~~~d~~i~v~d 87 (178)
T 2lkc_A 77 --QVTDIVILVVA 87 (178)
T ss_dssp --CCCCEEEEEEE
T ss_pred --hhCCEEEEEEE
Confidence 23788999999
No 190
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.56 E-value=3.7e-08 Score=101.08 Aligned_cols=38 Identities=18% Similarity=0.238 Sum_probs=33.4
Q ss_pred CCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEEC
Q psy16304 193 DFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYG 238 (537)
Q Consensus 193 ~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~ 238 (537)
..+|++++|+||||||||||+++|+|. +.|+.| +|.+.
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~----l~~~~g----~V~l~ 163 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANW----LKNHGF----SVVIA 163 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHH----HHHTTC----CEEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH----HHhcCC----EEEEE
Confidence 357999999999999999999999999 899999 55543
No 191
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=98.55 E-value=7.2e-08 Score=91.93 Aligned_cols=88 Identities=17% Similarity=0.294 Sum_probs=50.8
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee-eEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN-RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG 271 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t-~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l 271 (537)
+..+|+++|++|+|||||++.+.+..+ ..+.|+.+.. ...+.+++ .+.+.+||++|++.++..+..++..
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~------- 105 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPD------- 105 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------C-------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhcc-------
Confidence 346899999999999999999998765 3456776633 23455665 4689999999998877666555444
Q ss_pred CCCccceeeEEee-cCcccccCC
Q psy16304 272 RPDSRTCQVYLIM-CGVHQVSGI 293 (537)
Q Consensus 272 ~~~~~~~il~v~D-s~~~~~~~l 293 (537)
++++++++| ++...+..+
T Consensus 106 ----~d~~i~v~d~~~~~s~~~~ 124 (214)
T 2j1l_A 106 ----ASVLLLCFDVTSPNSFDNI 124 (214)
T ss_dssp ----EEEEEEEEETTCHHHHHHH
T ss_pred ----CCEEEEEEECcCHHHHHHH
Confidence 899999999 555544433
No 192
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=98.54 E-value=1.6e-07 Score=88.37 Aligned_cols=86 Identities=19% Similarity=0.254 Sum_probs=64.1
Q ss_pred CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee-EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCCC
Q psy16304 196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGR 272 (537)
Q Consensus 196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~-~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~ 272 (537)
..+|+++|+.|+|||||++.+.+..+ ..+.|+.|... ..+.+++ .+.+.+||++|+++++..+..++..
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~-------- 96 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPD-------- 96 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTT--------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCC--------
Confidence 46799999999999999999998766 44567777433 3456665 4689999999998877655554444
Q ss_pred CCccceeeEEee-cCcccccC
Q psy16304 273 PDSRTCQVYLIM-CGVHQVSG 292 (537)
Q Consensus 273 ~~~~~~il~v~D-s~~~~~~~ 292 (537)
++++++++| ++...+..
T Consensus 97 ---~d~~i~v~d~~~~~s~~~ 114 (201)
T 2gco_A 97 ---TDVILMCFSIDSPDSLEN 114 (201)
T ss_dssp ---CSEEEEEEETTCHHHHHH
T ss_pred ---CCEEEEEEECCCHHHHHH
Confidence 889999999 55544433
No 193
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=98.54 E-value=2.1e-08 Score=95.38 Aligned_cols=89 Identities=17% Similarity=0.228 Sum_probs=65.6
Q ss_pred CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeeeEEEEEC--C--cEEEEEeecCCCchhhHHHHhhhhccccCCC
Q psy16304 196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNRARVEYG--N--KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL 270 (537)
Q Consensus 196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~~~i~i~--g--~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~ 270 (537)
..+|+|+|++|||||||++.|++..+ ..+.++.|.+...+.+. + .+.+.+||++|++.++..+..++..
T Consensus 11 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~------ 84 (218)
T 4djt_A 11 TYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIG------ 84 (218)
T ss_dssp EEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTT------
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhc------
Confidence 46799999999999999999998765 45567777555444432 2 2789999999998776655555554
Q ss_pred CCCCccceeeEEee-cCcccccCCcc
Q psy16304 271 GRPDSRTCQVYLIM-CGVHQVSGIPD 295 (537)
Q Consensus 271 l~~~~~~~il~v~D-s~~~~~~~l~~ 295 (537)
++++++++| ++...+..+..
T Consensus 85 -----~d~~i~v~d~~~~~s~~~~~~ 105 (218)
T 4djt_A 85 -----ASGAILFFDVTSRITCQNLAR 105 (218)
T ss_dssp -----CSEEEEEEETTCHHHHHTHHH
T ss_pred -----CCEEEEEEeCCCHHHHHHHHH
Confidence 889999999 55554444433
No 194
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.54 E-value=7.6e-09 Score=101.38 Aligned_cols=34 Identities=26% Similarity=0.337 Sum_probs=25.2
Q ss_pred cccccccCCCCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304 186 PTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGE 219 (537)
Q Consensus 186 ~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~ 219 (537)
..+++|.+.+|+++||+|+||||||||+++|+|.
T Consensus 15 l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 15 TENLYFQSMRPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp --------CCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ecceeccCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4456788889999999999999999999999986
No 195
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.53 E-value=1.3e-08 Score=93.48 Aligned_cols=44 Identities=20% Similarity=0.295 Sum_probs=38.9
Q ss_pred ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECC
Q psy16304 187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGN 239 (537)
Q Consensus 187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g 239 (537)
..+++.+.+|++++|+||||||||||+++|+|. . |+.| +|.++|
T Consensus 24 ~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~----l-~~~G----~V~~~g 67 (158)
T 1htw_A 24 ILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQG----I-GHQG----NVKSPT 67 (158)
T ss_dssp HHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHH----T-TCCS----CCCCCT
T ss_pred hccccccCCCCEEEEECCCCCCHHHHHHHHHHh----C-CCCC----eEEECC
Confidence 345677889999999999999999999999999 8 9999 777765
No 196
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.53 E-value=8.7e-09 Score=95.97 Aligned_cols=42 Identities=24% Similarity=0.366 Sum_probs=30.7
Q ss_pred CeEEEEeCCCCcHHHHHHHHhCCCCccccCc---eeeeeEEEEECCcEEEEEee
Q psy16304 197 VPILVLGLDNAGKSSIIKRILGEPIISLVPT---VGFNRARVEYGNKYEVFLYD 247 (537)
Q Consensus 197 ~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt---~G~t~~~i~i~g~~~i~~~D 247 (537)
++++|+|++|||||||++.|.|. +.|+ .| .|.+++ ..+..+|
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~----~~~~g~~~G----~I~~dg-~~i~~~~ 47 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI----LRERGLRVA----VVKRHA-HGDFEID 47 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH----HHHTTCCEE----EEEC----------
T ss_pred eEEEEECCCCCCHHHHHHHHHHH----hhhcCCceE----EEEEcC-cccccCC
Confidence 57999999999999999999999 8888 88 888886 5544444
No 197
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.52 E-value=1.5e-07 Score=88.91 Aligned_cols=86 Identities=20% Similarity=0.243 Sum_probs=59.2
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee-EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG 271 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~-~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l 271 (537)
...+|+++|+.|||||||++.+.+..+ ..+.|+.|... ..+.+++ ...+.+||++|++.++..+..++..
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~------- 96 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPD------- 96 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTT-------
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCC-------
Confidence 456899999999999999999998766 34557777333 3355665 4689999999998776555554444
Q ss_pred CCCccceeeEEee-cCccccc
Q psy16304 272 RPDSRTCQVYLIM-CGVHQVS 291 (537)
Q Consensus 272 ~~~~~~~il~v~D-s~~~~~~ 291 (537)
++++++++| ++...+.
T Consensus 97 ----~d~~i~v~d~~~~~s~~ 113 (207)
T 2fv8_A 97 ----TDVILMCFSVDSPDSLE 113 (207)
T ss_dssp ----CCEEEEEEETTCHHHHH
T ss_pred ----CCEEEEEEECCCHHHHH
Confidence 889999999 5544433
No 198
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.50 E-value=6.1e-08 Score=111.62 Aligned_cols=36 Identities=25% Similarity=0.324 Sum_probs=31.8
Q ss_pred cccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304 184 LLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGE 219 (537)
Q Consensus 184 ~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~ 219 (537)
.+++.+++.+.+|++++|+|||||||||||+++.+.
T Consensus 661 ~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 661 YVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp SCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred eecccccccCCCCeEEEEECCCCCchHHHHHHHHHH
Confidence 356678888889999999999999999999999764
No 199
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=98.49 E-value=2.7e-08 Score=95.04 Aligned_cols=93 Identities=18% Similarity=0.350 Sum_probs=67.6
Q ss_pred CCCeEEEEeCCCCcHHHHHHH-HhCCCCccccCceeeeeEEEEE--CC-cEEEEEeecCCCchhhHHHHhhhhccccCCC
Q psy16304 195 RSVPILVLGLDNAGKSSIIKR-ILGEPIISLVPTVGFNRARVEY--GN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL 270 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~-L~G~~~~~~~Pt~G~t~~~i~i--~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~ 270 (537)
...+|+|+|+.|||||||++. +.|.....+.|+.|++.....+ ++ ++.+.+||++|++.++..+..++..
T Consensus 14 ~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~------ 87 (221)
T 3gj0_A 14 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQ------ 87 (221)
T ss_dssp CEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTT------
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhc------
Confidence 346899999999999999999 4443234567888866655443 33 5789999999998777666666655
Q ss_pred CCCCccceeeEEee-cCcccccCCccccc
Q psy16304 271 GRPDSRTCQVYLIM-CGVHQVSGIPDELT 298 (537)
Q Consensus 271 l~~~~~~~il~v~D-s~~~~~~~l~~~l~ 298 (537)
++++++++| ++...+..+..++.
T Consensus 88 -----~~~~i~v~d~~~~~s~~~~~~~~~ 111 (221)
T 3gj0_A 88 -----AQCAIIMFDVTSRVTYKNVPNWHR 111 (221)
T ss_dssp -----CCEEEEEEETTCHHHHHTHHHHHH
T ss_pred -----CCEEEEEEECCCHHHHHHHHHHHH
Confidence 899999999 66555555544433
No 200
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=98.48 E-value=2e-07 Score=89.89 Aligned_cols=109 Identities=18% Similarity=0.360 Sum_probs=79.6
Q ss_pred CccEEEeccCccCccchhhhhcCCC-ceeeecccccc--cceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEE
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFN--RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLV 385 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la--~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlV 385 (537)
+.++.++|..++||++++.+|..|. .....+|++.. ...+..++ ...+.+|||+|++.+..+++.|++.++++++|
T Consensus 13 ~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv 92 (216)
T 4dkx_A 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVV 92 (216)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEE
T ss_pred cEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEEEE
Confidence 4578899999999999999999887 45556777633 22332233 36788999999999999999999999999999
Q ss_pred EeCCCcchhhhhhhhhh------cCCcEEEEeccc-chhh
Q psy16304 386 SHSLSGRPDDRCQVYLM------SCNCQVYLISAK-NLSN 418 (537)
Q Consensus 386 vdshd~~~~~~~~i~ll------~~G~ii~~g~nk-dl~~ 418 (537)
+|..++.+++.+..|+. ..+.++.+.+|| |+..
T Consensus 93 ~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~ 132 (216)
T 4dkx_A 93 YDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD 132 (216)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGG
T ss_pred eecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHh
Confidence 99999999998874443 245677888888 7643
No 201
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=98.48 E-value=4.5e-07 Score=83.87 Aligned_cols=108 Identities=30% Similarity=0.556 Sum_probs=87.5
Q ss_pred CCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEeC
Q psy16304 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSHS 388 (537)
Q Consensus 309 ~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvds 388 (537)
....+.++|.+++||+++++.|.++....+.+|.++....+..++ ..+.+|||+|.+.+...|..+++..+++++|+|.
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~~~-~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~ 93 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQG-FKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDS 93 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETT-EEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEET
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEEECC-EEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEEC
Confidence 346688999999999999999999987778888887665665565 8999999999999999999999999999999999
Q ss_pred CCcchhhhhhhhh---hc----CCcEEEEeccc-chh
Q psy16304 389 LSGRPDDRCQVYL---MS----CNCQVYLISAK-NLS 417 (537)
Q Consensus 389 hd~~~~~~~~i~l---l~----~G~ii~~g~nk-dl~ 417 (537)
.+..+++....++ +. .+.++...+|| |+.
T Consensus 94 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 130 (181)
T 1fzq_A 94 ADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLL 130 (181)
T ss_dssp TCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTST
T ss_pred cCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcc
Confidence 9988777655222 21 45677777777 763
No 202
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=98.48 E-value=2.1e-07 Score=89.38 Aligned_cols=109 Identities=11% Similarity=0.144 Sum_probs=66.4
Q ss_pred CCeEEEEeCCCCcHHHHHHHHhCCCC--ccccCcee--eeeEEEEECC-cEEEEEeecCCCch-hhHHHHhhhhccccCC
Q psy16304 196 SVPILVLGLDNAGKSSIIKRILGEPI--ISLVPTVG--FNRARVEYGN-KYEVFLYDLGGSED-FRTIWKQYLGTVSQTP 269 (537)
Q Consensus 196 G~~vgLVG~NGAGKSTLL~~L~G~~~--~~~~Pt~G--~t~~~i~i~g-~~~i~~~D~~G~~~-~r~~~~~~i~~v~Q~~ 269 (537)
..+|+|||++|+|||||++.++|... ....++.| +....+.++| .+.+.+||++|++. .+.+...++.
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~------ 110 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQ------ 110 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCC------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHh------
Confidence 46799999999999999999998543 22234456 3345667776 35678899999875 2222222222
Q ss_pred CCCCCccceeeEEee-cCcccccCCcccccccCcCCccccCCccEEEec
Q psy16304 270 LGRPDSRTCQVYLIM-CGVHQVSGIPDELTSATHLPLVDFRSVPILVLG 317 (537)
Q Consensus 270 ~l~~~~~~~il~v~D-s~~~~~~~l~~~l~~~~~l~~~~~~~~~L~llG 317 (537)
.++++++++| ++...++.+..+...+.... .....++.++|
T Consensus 111 -----~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~--~~~~~piilVg 152 (211)
T 2g3y_A 111 -----VGDAYLIVYSITDRASFEKASELRIQLRRAR--QTEDIPIILVG 152 (211)
T ss_dssp -----CCSEEEEEEETTCHHHHHHHHHHHHHHHTSG--GGTTSCEEEEE
T ss_pred -----hCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCcEEEEE
Confidence 3789999999 66666555544433222211 11235566665
No 203
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=98.47 E-value=4.9e-08 Score=99.90 Aligned_cols=77 Identities=19% Similarity=0.222 Sum_probs=59.9
Q ss_pred eEEEEeCCCCcHHHHHHHHhCCCCc----cccCceeeeeEEEEECCcEEEEEeecCCCchhhH---HHHhhhhccccCCC
Q psy16304 198 PILVLGLDNAGKSSIIKRILGEPII----SLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRT---IWKQYLGTVSQTPL 270 (537)
Q Consensus 198 ~vgLVG~NGAGKSTLL~~L~G~~~~----~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~---~~~~~i~~v~Q~~~ 270 (537)
+++|+|+.|+|||||++.+.+..+. .+.||.|+....+ +..+++.+||++|+++++. .+..++..
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v--~~~v~LqIWDTAGQErf~~~~l~~~~yyr~------ 72 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHF--STLIDLAVMELPGQLNYFEPSYDSERLFKS------ 72 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEE--CSSSCEEEEECCSCSSSCCCSHHHHHHHTT------
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEE--ccEEEEEEEECCCchhccchhhhhhhhccC------
Confidence 5899999999999999998875432 2568888766654 4458899999999998863 34566665
Q ss_pred CCCCccceeeEEee-cCc
Q psy16304 271 GRPDSRTCQVYLIM-CGV 287 (537)
Q Consensus 271 l~~~~~~~il~v~D-s~~ 287 (537)
++++++|+| ++.
T Consensus 73 -----a~~~IlV~Ditd~ 85 (331)
T 3r7w_B 73 -----VGALVYVIDSQDE 85 (331)
T ss_dssp -----CSEEEEECCCSSC
T ss_pred -----CCEEEEEEECCch
Confidence 899999999 554
No 204
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=98.47 E-value=3.5e-07 Score=92.69 Aligned_cols=77 Identities=19% Similarity=0.311 Sum_probs=55.3
Q ss_pred CeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEE----EEECCcEEEEEeecCCCchhh--------HHHHhhhhc
Q psy16304 197 VPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRAR----VEYGNKYEVFLYDLGGSEDFR--------TIWKQYLGT 264 (537)
Q Consensus 197 ~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~----i~i~g~~~i~~~D~~G~~~~r--------~~~~~~i~~ 264 (537)
-+++|+|.+|||||||++.|.|..++...+..++|+.. +..+ +..+.+|||+|+.+.+ .....++.
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~-~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~- 85 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG-RRQIVFVDTPGLHKPMDALGEFMDQEVYEALA- 85 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TEEEEEEECCCCCCCCSHHHHHHHHHHHHHTS-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeC-CcEEEEecCccccchhhHHHHHHHHHHHHHHh-
Confidence 46999999999999999999998776555555544432 2333 5899999999987532 22222222
Q ss_pred cccCCCCCCCccceeeEEeec
Q psy16304 265 VSQTPLGRPDSRTCQVYLIMC 285 (537)
Q Consensus 265 v~Q~~~l~~~~~~~il~v~Ds 285 (537)
.++++++++|.
T Consensus 86 ----------~ad~il~VvD~ 96 (301)
T 1wf3_A 86 ----------DVNAVVWVVDL 96 (301)
T ss_dssp ----------SCSEEEEEEET
T ss_pred ----------cCCEEEEEEEC
Confidence 38999999993
No 205
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.47 E-value=2.8e-07 Score=97.49 Aligned_cols=45 Identities=22% Similarity=0.401 Sum_probs=30.8
Q ss_pred hhcccccCCCcccCCCCCCCCCcchhhcccccccccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304 151 ILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGE 219 (537)
Q Consensus 151 ~li~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~ 219 (537)
.++.+.++++.|+...+..+ + ...++|||+||||||||+++|+|.
T Consensus 10 ~~l~~~~l~~~y~~~~vl~~------------------v------sf~I~lvG~sGaGKSTLln~L~g~ 54 (418)
T 2qag_C 10 GYVGFANLPNQVYRKSVKRG------------------F------EFTLMVVGESGLGKSTLINSLFLT 54 (418)
T ss_dssp -----CCCCCCTTTTTCC-C------------------C------CEEEEEECCTTSSHHHHHHHHTTC
T ss_pred CcEEEEecceeECCEEEecC------------------C------CEEEEEECCCCCcHHHHHHHHhCC
Confidence 35788999998865443333 1 134699999999999999999998
No 206
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=98.46 E-value=4.9e-07 Score=83.40 Aligned_cols=79 Identities=27% Similarity=0.373 Sum_probs=53.4
Q ss_pred CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee--eeeEEEEECCcEEEEEeecCCCchhh------HHHHhhhhccc
Q psy16304 196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEYGNKYEVFLYDLGGSEDFR------TIWKQYLGTVS 266 (537)
Q Consensus 196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G--~t~~~i~i~g~~~i~~~D~~G~~~~r------~~~~~~i~~v~ 266 (537)
..+++|+|++|||||||++.|+|..+ ....|+.+ .....+.+++ ..+.+||++|+..++ .++..++..
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~-- 83 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG-EKFKVVDLPGVYSLTANSIDEIIARDYIIN-- 83 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT-EEEEEEECCCCSCCSSSSHHHHHHHHHHHH--
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC-cEEEEEECCCcCccccccHHHHHHHHHHhc--
Confidence 46799999999999999999999643 22223222 2333666765 999999999987653 223333321
Q ss_pred cCCCCCCCccceeeEEee
Q psy16304 267 QTPLGRPDSRTCQVYLIM 284 (537)
Q Consensus 267 Q~~~l~~~~~~~il~v~D 284 (537)
..++.+++++|
T Consensus 84 -------~~~~~~i~v~d 94 (188)
T 2wjg_A 84 -------EKPDLVVNIVD 94 (188)
T ss_dssp -------HCCSEEEEEEE
T ss_pred -------cCCCEEEEEec
Confidence 11577888888
No 207
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.46 E-value=2.8e-08 Score=96.45 Aligned_cols=26 Identities=15% Similarity=0.224 Sum_probs=24.1
Q ss_pred CCCCCeEEEEeCCCCcHHHHHHHHhC
Q psy16304 193 DFRSVPILVLGLDNAGKSSIIKRILG 218 (537)
Q Consensus 193 ~~~G~~vgLVG~NGAGKSTLL~~L~G 218 (537)
+.+|+.++|+||||||||||+++|++
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 45899999999999999999999994
No 208
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=98.45 E-value=1.7e-07 Score=87.08 Aligned_cols=80 Identities=20% Similarity=0.252 Sum_probs=49.7
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeeeEEE--EECCcEEEEEeecCC----------CchhhHHHHhh
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNRARV--EYGNKYEVFLYDLGG----------SEDFRTIWKQY 261 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~~~i--~i~g~~~i~~~D~~G----------~~~~r~~~~~~ 261 (537)
...+++|+|+.|||||||++.|.+..+ ..+.++.|.|.... .++ ..+.+||++| ++.++..+..+
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 99 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIN--DELHFVDVPGYGFAKVSKSEREAWGRMIETY 99 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEET--TTEEEEECCCBCCCSSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEEC--CcEEEEECCCCCccccCHHHHHHHHHHHHHH
Confidence 467899999999999999999999864 55667777555433 333 3688999999 55555555555
Q ss_pred hhccccCCCCCCCccceeeEEee
Q psy16304 262 LGTVSQTPLGRPDSRTCQVYLIM 284 (537)
Q Consensus 262 i~~v~Q~~~l~~~~~~~il~v~D 284 (537)
+... ...+++++++|
T Consensus 100 ~~~~--------~~~~~~i~v~d 114 (195)
T 1svi_A 100 ITTR--------EELKAVVQIVD 114 (195)
T ss_dssp HHHC--------TTEEEEEEEEE
T ss_pred Hhhh--------hcCCEEEEEEE
Confidence 5440 11478889999
No 209
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.44 E-value=2.3e-07 Score=85.82 Aligned_cols=82 Identities=21% Similarity=0.246 Sum_probs=58.3
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCC----------CchhhHHHHhhhhc
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGG----------SEDFRTIWKQYLGT 264 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G----------~~~~r~~~~~~i~~ 264 (537)
...+++|+|+.|||||||++.|.+..+....++.|++........+..+.+||++| ...++..+..++..
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 101 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKN 101 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHHHHHHHHhc
Confidence 45689999999999999999999987666778888665443332124678999999 44455555555544
Q ss_pred cccCCCCCCCccceeeEEee
Q psy16304 265 VSQTPLGRPDSRTCQVYLIM 284 (537)
Q Consensus 265 v~Q~~~l~~~~~~~il~v~D 284 (537)
. ...+.+++++|
T Consensus 102 ~--------~~~~~vi~v~d 113 (195)
T 3pqc_A 102 R--------WSLQMVFLLVD 113 (195)
T ss_dssp C--------TTEEEEEEEEE
T ss_pred C--------cCceEEEEEec
Confidence 1 12477888888
No 210
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.44 E-value=5.2e-07 Score=80.71 Aligned_cols=75 Identities=21% Similarity=0.314 Sum_probs=49.9
Q ss_pred eEEEEeCCCCcHHHHHHHHhCCCCccccCceee----eeEEEEECCcEEEEEeecCCCch-------hhHHHHhhhhccc
Q psy16304 198 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGF----NRARVEYGNKYEVFLYDLGGSED-------FRTIWKQYLGTVS 266 (537)
Q Consensus 198 ~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~----t~~~i~i~g~~~i~~~D~~G~~~-------~r~~~~~~i~~v~ 266 (537)
+++++|+.|+|||||++.+.+..+....+..|+ ....+.+++ ..+.+||++|+.. .+..+...+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~-- 79 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDR-GRFLLVDTGGLWSGDKWEKKIQEKVDRALED-- 79 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETT-EEEEEEECGGGCSSSSCCHHHHHHHHHHTTT--
T ss_pred EEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCC-ceEEEEECCCCCCccchHHHHHHHHHHHHHh--
Confidence 689999999999999999998754333333332 233555665 7999999999875 22233333333
Q ss_pred cCCCCCCCccceeeEEee
Q psy16304 267 QTPLGRPDSRTCQVYLIM 284 (537)
Q Consensus 267 Q~~~l~~~~~~~il~v~D 284 (537)
++++++++|
T Consensus 80 ---------~~~~i~v~d 88 (161)
T 2dyk_A 80 ---------AEVVLFAVD 88 (161)
T ss_dssp ---------CSEEEEEEE
T ss_pred ---------CCEEEEEEE
Confidence 788999999
No 211
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=98.43 E-value=1.3e-08 Score=95.79 Aligned_cols=92 Identities=22% Similarity=0.369 Sum_probs=63.9
Q ss_pred CCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee--eeeEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304 196 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG 271 (537)
Q Consensus 196 G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G--~t~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l 271 (537)
-.+|+|+|+.|||||||++.|.+..+ ....|+.| +....+.+++ .+.+.+||++|++.++..+..++..
T Consensus 33 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~------- 105 (199)
T 3l0i_B 33 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRG------- 105 (199)
T ss_dssp EEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CC-------
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhc-------
Confidence 36799999999999999999999765 33456666 4445666665 3689999999987766444433333
Q ss_pred CCCccceeeEEee-cCcccccCCccccc
Q psy16304 272 RPDSRTCQVYLIM-CGVHQVSGIPDELT 298 (537)
Q Consensus 272 ~~~~~~~il~v~D-s~~~~~~~l~~~l~ 298 (537)
++++++++| ++...++.+..++.
T Consensus 106 ----~d~~i~v~d~~~~~s~~~~~~~~~ 129 (199)
T 3l0i_B 106 ----AHGIIVVYDVTDQESFNNVKQWLQ 129 (199)
T ss_dssp ----CSEEEECC-CCCSHHHHHHHHHHH
T ss_pred ----CCEEEEEEECCCHHHHHHHHHHHH
Confidence 899999999 66555544444443
No 212
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=97.80 E-value=2.6e-08 Score=93.86 Aligned_cols=90 Identities=17% Similarity=0.189 Sum_probs=63.4
Q ss_pred CCCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeee-EEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCC
Q psy16304 194 FRSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL 270 (537)
Q Consensus 194 ~~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~-~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~ 270 (537)
.+..+|+++|++|||||||++.+.+..+ ..+.|+.|... ..+.+++ .+.+.+||++|+++++..+..++..
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~------ 101 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQ------ 101 (204)
Confidence 3567899999999999999999998655 34456666221 2333333 3667799999998777665555544
Q ss_pred CCCCccceeeEEee-cCcccccCCc
Q psy16304 271 GRPDSRTCQVYLIM-CGVHQVSGIP 294 (537)
Q Consensus 271 l~~~~~~~il~v~D-s~~~~~~~l~ 294 (537)
++++++++| ++...+..+.
T Consensus 102 -----~d~iilv~D~~~~~s~~~~~ 121 (204)
T 3th5_A 102 -----TDVFLICFSLVSPASFENVR 121 (204)
Confidence 888999999 6655555443
No 213
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.43 E-value=1.1e-07 Score=111.09 Aligned_cols=34 Identities=24% Similarity=0.391 Sum_probs=29.1
Q ss_pred ccccccccCCC-------CCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304 185 LPTHLSLFDFR-------SVPILVLGLDNAGKSSIIKRILGE 219 (537)
Q Consensus 185 ~~~~~~l~~~~-------G~~vgLVG~NGAGKSTLL~~L~G~ 219 (537)
+++.+++...+ |++++|+||||+||||||+++ |.
T Consensus 771 v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl 811 (1022)
T 2o8b_B 771 IPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GL 811 (1022)
T ss_dssp CCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HH
T ss_pred EeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HH
Confidence 45566676665 899999999999999999999 87
No 214
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=98.42 E-value=3.1e-07 Score=85.99 Aligned_cols=79 Identities=22% Similarity=0.230 Sum_probs=56.3
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee--eeeEEEE--E--CCcEEEEEeecCCCchhhHHH---Hhhhhcc
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG--FNRARVE--Y--GNKYEVFLYDLGGSEDFRTIW---KQYLGTV 265 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G--~t~~~i~--i--~g~~~i~~~D~~G~~~~r~~~---~~~i~~v 265 (537)
+..+++|+|++|||||||++.+.+..... ++.| ++...+. + +..+.+.+||++|+++++... ..++..
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~- 95 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHKMSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRG- 95 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSCCCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHT-
T ss_pred cceEEEEECCCCCCHHHHHHHHHhcCCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccccccc-
Confidence 56789999999999999999999863222 3333 3322333 2 235889999999998765443 556655
Q ss_pred ccCCCCCCCccceeeEEee-cC
Q psy16304 266 SQTPLGRPDSRTCQVYLIM-CG 286 (537)
Q Consensus 266 ~Q~~~l~~~~~~~il~v~D-s~ 286 (537)
++++++++| ++
T Consensus 96 ----------~~~~i~v~d~~~ 107 (196)
T 3llu_A 96 ----------TGALIYVIDAQD 107 (196)
T ss_dssp ----------CSEEEEEEETTS
T ss_pred ----------CCEEEEEEECCC
Confidence 899999999 44
No 215
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.41 E-value=4.3e-07 Score=95.21 Aligned_cols=80 Identities=18% Similarity=0.131 Sum_probs=50.4
Q ss_pred CCCCCeEEEEeCCCCcHHHHHHHHhCCCC-------ccccCceeeeeEEEEECC----------------cEEEEEeecC
Q psy16304 193 DFRSVPILVLGLDNAGKSSIIKRILGEPI-------ISLVPTVGFNRARVEYGN----------------KYEVFLYDLG 249 (537)
Q Consensus 193 ~~~G~~vgLVG~NGAGKSTLL~~L~G~~~-------~~~~Pt~G~t~~~i~i~g----------------~~~i~~~D~~ 249 (537)
+..+.+++|||+||||||||++.|+|..+ ++..|..| .+.+.+ ...+.+||++
T Consensus 19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g----~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtp 94 (396)
T 2ohf_A 19 FGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNES----RVPVPDERFDFLCQYHKPASKIPAFLNVVDIA 94 (396)
T ss_dssp SSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEE----EEECCCHHHHHHHHHHCCSEEECCEEEEEECC
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeE----EEEECCccceeeccccCcccccccccEEEECC
Confidence 44789999999999999999999999743 33456667 777654 1358999999
Q ss_pred CCchhhH-------HHHhhhhccccCCCCCCCccceeeEEee-cCc
Q psy16304 250 GSEDFRT-------IWKQYLGTVSQTPLGRPDSRTCQVYLIM-CGV 287 (537)
Q Consensus 250 G~~~~r~-------~~~~~i~~v~Q~~~l~~~~~~~il~v~D-s~~ 287 (537)
|+..... .+..++. .++++++|+| ++.
T Consensus 95 Gl~~~as~~~glg~~~l~~ir-----------~aD~Il~VvD~~~~ 129 (396)
T 2ohf_A 95 GLVKGAHNGQGLGNAFLSHIS-----------ACDGIFHLTRAFED 129 (396)
T ss_dssp C-----------CCHHHHHHH-----------TSSSEEEEEEC---
T ss_pred CcccccchhhHHHHHHHHHHH-----------hcCeEEEEEecCCC
Confidence 9875432 1222223 2889999999 443
No 216
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.41 E-value=2.1e-08 Score=103.90 Aligned_cols=36 Identities=22% Similarity=0.219 Sum_probs=29.7
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCCcccc-CceeeeeEEEEEC
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPIISLV-PTVGFNRARVEYG 238 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~-Pt~G~t~~~i~i~ 238 (537)
+|++++|+|+||||||||+|+|+|. .. |+.| .+.+.
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~----~~~~~~G----~I~~~ 250 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGL----QNEILTN----DVSNV 250 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCC----SSCCCCC---------
T ss_pred CCCEEEEECCCCccHHHHHHHHhcc----ccccccC----Ccccc
Confidence 6899999999999999999999999 88 9999 66654
No 217
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.40 E-value=6.4e-07 Score=82.91 Aligned_cols=108 Identities=22% Similarity=0.466 Sum_probs=84.0
Q ss_pred CCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEeC
Q psy16304 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSHS 388 (537)
Q Consensus 309 ~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvds 388 (537)
....+.++|..++||+++++.|.++......+|.++....+..++ ..+.+|||+|.+.+...|..+++..+++++|+|.
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~ 93 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINN-TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDS 93 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEETT-EEEEEEECCC----CGGGHHHHTTCCEEEEEEET
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceEEEEECC-EEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeC
Confidence 456788999999999999999999987678888887666666566 8999999999988888899999999999999999
Q ss_pred CCcchhhhhhhhh---hc----CCcEEEEeccc-chh
Q psy16304 389 LSGRPDDRCQVYL---MS----CNCQVYLISAK-NLS 417 (537)
Q Consensus 389 hd~~~~~~~~i~l---l~----~G~ii~~g~nk-dl~ 417 (537)
.+..+++....++ .. .+.++....|| |+.
T Consensus 94 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 130 (187)
T 1zj6_A 94 TDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVK 130 (187)
T ss_dssp TCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTST
T ss_pred CCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCc
Confidence 9987776655322 22 46677777777 763
No 218
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=98.40 E-value=2.1e-07 Score=87.31 Aligned_cols=89 Identities=10% Similarity=0.106 Sum_probs=57.1
Q ss_pred CeEEEEeCCCCcHHHHHHHHhCCCC--ccccCcee--eeeEEEEECC-cEEEEEeecCCCch-hhHHHHhhhhccccCCC
Q psy16304 197 VPILVLGLDNAGKSSIIKRILGEPI--ISLVPTVG--FNRARVEYGN-KYEVFLYDLGGSED-FRTIWKQYLGTVSQTPL 270 (537)
Q Consensus 197 ~~vgLVG~NGAGKSTLL~~L~G~~~--~~~~Pt~G--~t~~~i~i~g-~~~i~~~D~~G~~~-~r~~~~~~i~~v~Q~~~ 270 (537)
.+++|||++|||||||++.++|... ....++.| +....+.++| .+.+.+||++|... .+.+...++..
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~------ 80 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQV------ 80 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHH------
T ss_pred EEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhccc------
Confidence 5799999999999999999997432 22223455 2335567776 35677899988764 23333344444
Q ss_pred CCCCccceeeEEee-cCcccccCCccc
Q psy16304 271 GRPDSRTCQVYLIM-CGVHQVSGIPDE 296 (537)
Q Consensus 271 l~~~~~~~il~v~D-s~~~~~~~l~~~ 296 (537)
++++++++| ++...+..+..+
T Consensus 81 -----~~~~i~v~dv~~~~s~~~~~~~ 102 (192)
T 2cjw_A 81 -----GDAYLIVYSITDRASFEKASEL 102 (192)
T ss_dssp -----CSEEEEEEETTCHHHHHHHHHH
T ss_pred -----CCEEEEEEECCCHHHHHHHHHH
Confidence 788999999 666655554443
No 219
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=98.40 E-value=4.5e-07 Score=92.01 Aligned_cols=78 Identities=24% Similarity=0.391 Sum_probs=58.5
Q ss_pred CCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEE----EEECCcEEEEEeecCCCchhh----------HHHHhh
Q psy16304 196 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRAR----VEYGNKYEVFLYDLGGSEDFR----------TIWKQY 261 (537)
Q Consensus 196 G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~----i~i~g~~~i~~~D~~G~~~~r----------~~~~~~ 261 (537)
--+|+|+|++|||||||++.|.|..++...+..|+|+.. ...+.+..+.+|||+|+.+.. ..+...
T Consensus 10 ~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~ 89 (308)
T 3iev_A 10 VGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQS 89 (308)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHHH
Confidence 356999999999999999999999877666777755533 334425999999999985432 233344
Q ss_pred hhccccCCCCCCCccceeeEEee
Q psy16304 262 LGTVSQTPLGRPDSRTCQVYLIM 284 (537)
Q Consensus 262 i~~v~Q~~~l~~~~~~~il~v~D 284 (537)
+.. ++++++++|
T Consensus 90 l~~-----------aD~il~VvD 101 (308)
T 3iev_A 90 LEE-----------ADVILFMID 101 (308)
T ss_dssp HHH-----------CSEEEEEEE
T ss_pred hhc-----------CCEEEEEEe
Confidence 444 899999999
No 220
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=98.37 E-value=4e-07 Score=91.98 Aligned_cols=87 Identities=17% Similarity=0.179 Sum_probs=63.7
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeee-eEEEEECC-cEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN-RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG 271 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t-~~~i~i~g-~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l 271 (537)
...+++++|++|+|||||++.+++..+ ..+.+|.|.. ...+.+++ .+.+.+||++|++.++..+..++..
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~------- 226 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQ------- 226 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTT-------
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccC-------
Confidence 567899999999999999999997655 4456777633 23445554 3566799999998777555555444
Q ss_pred CCCccceeeEEee-cCcccccC
Q psy16304 272 RPDSRTCQVYLIM-CGVHQVSG 292 (537)
Q Consensus 272 ~~~~~~~il~v~D-s~~~~~~~ 292 (537)
++++++++| ++...+..
T Consensus 227 ----~d~~i~v~d~~~~~s~~~ 244 (332)
T 2wkq_A 227 ----TDVFLICFSLVSPASFHH 244 (332)
T ss_dssp ----CSEEEEEEETTCHHHHHH
T ss_pred ----CCEEEEEEeCCCHHHHHH
Confidence 899999999 55554443
No 221
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=98.37 E-value=8.1e-07 Score=88.15 Aligned_cols=78 Identities=21% Similarity=0.311 Sum_probs=54.0
Q ss_pred CeEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee--eeeEEEEECCcEEEEEeecCCCchhhH------HHHhhhhcccc
Q psy16304 197 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEYGNKYEVFLYDLGGSEDFRT------IWKQYLGTVSQ 267 (537)
Q Consensus 197 ~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G--~t~~~i~i~g~~~i~~~D~~G~~~~r~------~~~~~i~~v~Q 267 (537)
.+|+|+|++|||||||++.|+|..+ ....|..+ .....+.+.+ ..+.+||++|+..+.. .++.++..
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~--- 79 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE-KEFLVVDLPGIYSLTAHSIDELIARNFILD--- 79 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETT-EEEEEEECCCCSCCCSSCHHHHHHHHHHHT---
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECC-ceEEEEeCCCccccccCCHHHHHHHHhhhc---
Confidence 5799999999999999999999854 22223222 2223455565 8899999999876543 33343321
Q ss_pred CCCCCCCccceeeEEee
Q psy16304 268 TPLGRPDSRTCQVYLIM 284 (537)
Q Consensus 268 ~~~l~~~~~~~il~v~D 284 (537)
...+++++++|
T Consensus 80 ------~~~d~vi~v~D 90 (271)
T 3k53_A 80 ------GNADVIVDIVD 90 (271)
T ss_dssp ------TCCSEEEEEEE
T ss_pred ------cCCcEEEEEec
Confidence 22788999999
No 222
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=98.36 E-value=3.1e-07 Score=94.44 Aligned_cols=73 Identities=15% Similarity=0.217 Sum_probs=44.3
Q ss_pred cCccchhhhhcCCCceeeec--ccccccceeccCCceEEEEEe--cCchhhHH--HHH---HHHHhcCCEEEEEEeCCCc
Q psy16304 321 AGKSSIIKRILGEPIISLVP--TVGFNRARVEYGNKYEVFLYD--LGGSEDFR--TIW---KQYLGTVSQTLLVSHSLSG 391 (537)
Q Consensus 321 ~gKs~li~~LSgG~rqrvs~--ti~la~all~~~e~p~lllLD--T~Gl~~~~--~l~---~~~~~~~~~vIlVvdshd~ 391 (537)
.++...+..|||||+|++.- .++++++++. + |++++|| |+|++... .++ ..+.+.+ .+++++ +|+.
T Consensus 240 ~~~~~~~~~lS~G~~~~~~la~~l~~a~~l~~--~-p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~-~~vi~~-sH~~ 314 (339)
T 3qkt_A 240 EGKERPLTFLSGGERIALGLAFRLAMSLYLAG--E-ISLLILDEPTPYLDEERRRKLITIMERYLKKI-PQVILV-SHDE 314 (339)
T ss_dssp TTEEECGGGSCHHHHHHHHHHHHHHHHHHTTT--T-TCEEEEECCCTTCCHHHHHHHHHHHHHTGGGS-SEEEEE-ESCG
T ss_pred ccCcCChHHCCHHHHHHHHHHHHHHHHHHhcC--C-CCEEEEECCCCCCCHHHHHHHHHHHHHHHhcC-CEEEEE-EChH
Confidence 44566689999999996511 1255566653 3 8999999 99994332 222 3333333 356666 6776
Q ss_pred chhhhhh
Q psy16304 392 RPDDRCQ 398 (537)
Q Consensus 392 ~~~~~~~ 398 (537)
.....++
T Consensus 315 ~~~~~~d 321 (339)
T 3qkt_A 315 ELKDAAD 321 (339)
T ss_dssp GGGGGCS
T ss_pred HHHHhCC
Confidence 5444333
No 223
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.35 E-value=1.1e-06 Score=85.16 Aligned_cols=57 Identities=23% Similarity=0.327 Sum_probs=39.7
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCCc-cccCceeee----eEEEEECCcEEEEEeecCCCc
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPII-SLVPTVGFN----RARVEYGNKYEVFLYDLGGSE 252 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~-~~~Pt~G~t----~~~i~i~g~~~i~~~D~~G~~ 252 (537)
+..+|+|+|++|||||||++.|+|..+. ...|..|+| ...+.+++ ..+.+||++|..
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~i~liDTpG~~ 89 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE-TELVVVDTPGIF 89 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT-EEEEEEECCSCC
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC-ceEEEEECCCcc
Confidence 3467999999999999999999997552 222322322 23556665 899999999964
No 224
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=98.35 E-value=2.4e-07 Score=99.70 Aligned_cols=91 Identities=19% Similarity=0.181 Sum_probs=45.0
Q ss_pred CCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeE----EEEECCcEEEEEeecCCCchhhHHHHhhhhccccCC
Q psy16304 194 FRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA----RVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTP 269 (537)
Q Consensus 194 ~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~----~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~ 269 (537)
..|.+|+|+|++|||||||+|.|++..+....+..|+|++ .+.++| ..+.+|||+|+.+....+.. ++ .+..
T Consensus 231 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g-~~l~liDT~G~~~~~~~ve~-~g--i~~~ 306 (476)
T 3gee_A 231 SEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK-TMFRLTDTAGLREAGEEIEH-EG--IRRS 306 (476)
T ss_dssp HHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT-EEEEEEC----------------------
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC-eEEEEEECCCCCcchhHHHH-HH--HHHH
Confidence 3578899999999999999999999865555556665543 466665 99999999998765433322 11 0111
Q ss_pred CCCCCccceeeEEee-cCcc
Q psy16304 270 LGRPDSRTCQVYLIM-CGVH 288 (537)
Q Consensus 270 ~l~~~~~~~il~v~D-s~~~ 288 (537)
..+...++.+++|+| ++..
T Consensus 307 ~~~~~~aD~vl~VvD~s~~~ 326 (476)
T 3gee_A 307 RMKMAEADLILYLLDLGTER 326 (476)
T ss_dssp -CCCSSCSEEEEEEETTTCS
T ss_pred HhhcccCCEEEEEEECCCCc
Confidence 223345899999999 4443
No 225
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.35 E-value=8.2e-07 Score=93.14 Aligned_cols=56 Identities=18% Similarity=0.322 Sum_probs=45.2
Q ss_pred CCCCCeEEEEeCCCCcHHHHHHHHhCCCC--------ccccCceeeeeEEEEECC----------------cEEEEEeec
Q psy16304 193 DFRSVPILVLGLDNAGKSSIIKRILGEPI--------ISLVPTVGFNRARVEYGN----------------KYEVFLYDL 248 (537)
Q Consensus 193 ~~~G~~vgLVG~NGAGKSTLL~~L~G~~~--------~~~~Pt~G~t~~~i~i~g----------------~~~i~~~D~ 248 (537)
+.+|.++||||+||||||||+|+|+|... ++..|+.| .+.+.+ +..+.++|+
T Consensus 17 v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G----~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~ 92 (392)
T 1ni3_A 17 PGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEA----KVAVPDERFDWLCEAYKPKSRVPAFLTVFDI 92 (392)
T ss_dssp SSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEE----EEEECCHHHHHHHHHHCCSEEECEEEEEECT
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceee----eeeeCCcchhhhhhhcccccccCcceEEEec
Confidence 45799999999999999999999999432 34578888 888775 146789999
Q ss_pred CCCc
Q psy16304 249 GGSE 252 (537)
Q Consensus 249 ~G~~ 252 (537)
+|..
T Consensus 93 pGl~ 96 (392)
T 1ni3_A 93 AGLT 96 (392)
T ss_dssp GGGC
T ss_pred cccc
Confidence 8864
No 226
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.34 E-value=3.3e-07 Score=92.73 Aligned_cols=86 Identities=16% Similarity=0.258 Sum_probs=55.5
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeE----EEEECCcEEEEEeecCCCc-hhhHHHHhhhhccccCC
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA----RVEYGNKYEVFLYDLGGSE-DFRTIWKQYLGTVSQTP 269 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~----~i~i~g~~~i~~~D~~G~~-~~r~~~~~~i~~v~Q~~ 269 (537)
++.+++|+|++|||||||++.|.|..++...+..|+|+. .+..+ +..+.++|++|+. .........+. +..
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~-~~~i~~iDTpG~~~~~~~~l~~~~~---~~~ 82 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEG-AYQAIYVDTPGLHMEEKRAINRLMN---KAA 82 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEET-TEEEEEESSSSCCHHHHHHHHHHHT---CCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEEC-CeeEEEEECcCCCccchhhHHHHHH---HHH
Confidence 456899999999999999999999876544444454432 23334 4889999999987 43322222211 112
Q ss_pred CCCCCccceeeEEee
Q psy16304 270 LGRPDSRTCQVYLIM 284 (537)
Q Consensus 270 ~l~~~~~~~il~v~D 284 (537)
......++.+++++|
T Consensus 83 ~~~l~~~D~vl~Vvd 97 (301)
T 1ega_A 83 SSSIGDVELVIFVVE 97 (301)
T ss_dssp TSCCCCEEEEEEEEE
T ss_pred HHHHhcCCEEEEEEe
Confidence 222344677777777
No 227
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=98.32 E-value=1.4e-06 Score=81.37 Aligned_cols=108 Identities=27% Similarity=0.543 Sum_probs=81.6
Q ss_pred CCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEeC
Q psy16304 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSHS 388 (537)
Q Consensus 309 ~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvds 388 (537)
....+.++|.+++||+++++.|.++......+|+++....+..++ ..+.+|||+|.+.+..+|..+++..+++++|+|.
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~ 106 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN-ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 106 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETTEEEEEEEETT-EEEEEEECC-----CTTHHHHHHTCCEEEEEEET
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCCccccCCcCceeEEEEEECC-EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence 456788999999999999999999986666777776555555455 8999999999988888899999999999999999
Q ss_pred CCcchhhhhhhhhh---c----CCcEEEEeccc-chh
Q psy16304 389 LSGRPDDRCQVYLM---S----CNCQVYLISAK-NLS 417 (537)
Q Consensus 389 hd~~~~~~~~i~ll---~----~G~ii~~g~nk-dl~ 417 (537)
.+..+++....++. . .+.++...+|| |+.
T Consensus 107 ~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~ 143 (192)
T 2b6h_A 107 NDRERVQESADELQKMLQEDELRDAVLLVFANKQDMP 143 (192)
T ss_dssp TCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred CCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCC
Confidence 99887776653322 2 36677777777 763
No 228
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=98.32 E-value=9.1e-07 Score=79.46 Aligned_cols=105 Identities=30% Similarity=0.592 Sum_probs=82.7
Q ss_pred cEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEeCCCc
Q psy16304 312 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSHSLSG 391 (537)
Q Consensus 312 ~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvdshd~ 391 (537)
.+.++|.+++||+++++.|.++......+|.++....+..++ ..+.+|||+|.+.+..+|..+++..+++++|+|..+.
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 80 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN-ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 80 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEEEEECSS-CEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCG
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcCcccCcCceeEEEEEECC-EEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCH
Confidence 467899999999999999998885555677776555555455 8999999999999999999999999999999999998
Q ss_pred chhhhhhhhhh---c----CCcEEEEeccc-chh
Q psy16304 392 RPDDRCQVYLM---S----CNCQVYLISAK-NLS 417 (537)
Q Consensus 392 ~~~~~~~i~ll---~----~G~ii~~g~nk-dl~ 417 (537)
.+++....++. . .+.++...+|| |+.
T Consensus 81 ~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 114 (164)
T 1r8s_A 81 ERVNEAREELMRMLAEDELRDAVLLVFANKQDLP 114 (164)
T ss_dssp GGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred HHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCc
Confidence 87776553322 2 36677777777 763
No 229
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=98.31 E-value=4.9e-07 Score=85.10 Aligned_cols=107 Identities=21% Similarity=0.383 Sum_probs=78.7
Q ss_pred CccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEeCC
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSHSL 389 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvdsh 389 (537)
...+.++|.+++||+++++.|.++......+|.+.....+..++ ..+.+|||+|++.++.+|..+++..+++++|+|.+
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~-~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~ 103 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAG-MTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCA 103 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETT-EEEEEEEECC----CCGGGGGGGGCSEEEEEEETT
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECC-EEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECC
Confidence 34678999999999999999999986667777777666666666 89999999999888888989999999999999999
Q ss_pred Ccchhhhhhhhhh-------cCCcEEEEeccc-chh
Q psy16304 390 SGRPDDRCQVYLM-------SCNCQVYLISAK-NLS 417 (537)
Q Consensus 390 d~~~~~~~~i~ll-------~~G~ii~~g~nk-dl~ 417 (537)
+..+++....|+. ..+.++...+|| |+.
T Consensus 104 ~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 139 (198)
T 1f6b_A 104 DHERLLESKEELDSLMTDETIANVPILILGNKIDRP 139 (198)
T ss_dssp CGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTST
T ss_pred CHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCcc
Confidence 9887776653321 146777788888 763
No 230
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=98.31 E-value=6.7e-07 Score=82.43 Aligned_cols=108 Identities=22% Similarity=0.456 Sum_probs=87.0
Q ss_pred CCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEeC
Q psy16304 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSHS 388 (537)
Q Consensus 309 ~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvds 388 (537)
....+.++|..++||+++++.|.++......+|.++....+..++ ..+.+|||+|.+.+..+|..+++..+++++|+|.
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~ 98 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINN-TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDS 98 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCEEEEETT-EEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEET
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeEEEEECC-EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence 345688999999999999999999998778888887666665566 8999999999988888888999999999999999
Q ss_pred CCcchhhhhhhhh---h----cCCcEEEEeccc-chh
Q psy16304 389 LSGRPDDRCQVYL---M----SCNCQVYLISAK-NLS 417 (537)
Q Consensus 389 hd~~~~~~~~i~l---l----~~G~ii~~g~nk-dl~ 417 (537)
.+..+++....++ + ..+.++....|| |+.
T Consensus 99 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 135 (181)
T 2h17_A 99 TDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVK 135 (181)
T ss_dssp TCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred CCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcc
Confidence 9987777655222 2 256677777777 763
No 231
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.29 E-value=1.1e-06 Score=93.67 Aligned_cols=58 Identities=22% Similarity=0.339 Sum_probs=42.2
Q ss_pred CCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeE----EEEECCcEEEEEeecCCCchh
Q psy16304 196 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA----RVEYGNKYEVFLYDLGGSEDF 254 (537)
Q Consensus 196 G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~----~i~i~g~~~i~~~D~~G~~~~ 254 (537)
..+++|+|+||||||||++.|+|..+....+..|+|++ .+.++| ..+.+||++|+.+.
T Consensus 180 ~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g-~~~~l~Dt~G~~~~ 241 (439)
T 1mky_A 180 AIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDG-RKYVFVDTAGLRRK 241 (439)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETT-EEEEESSCSCC---
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECC-EEEEEEECCCCccc
Confidence 46899999999999999999999866545555554442 677776 78999999998543
No 232
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=98.28 E-value=1.8e-06 Score=85.20 Aligned_cols=80 Identities=20% Similarity=0.269 Sum_probs=53.7
Q ss_pred eEEEEeCCCCcHHHHHHHHhCCCC-ccccCcee--eeeEEEEECCcEEEEEeecCCCchhhH----------HHHhhhhc
Q psy16304 198 PILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEYGNKYEVFLYDLGGSEDFRT----------IWKQYLGT 264 (537)
Q Consensus 198 ~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G--~t~~~i~i~g~~~i~~~D~~G~~~~r~----------~~~~~i~~ 264 (537)
+|+|+|.+|||||||++.|+|... ....|..+ .....+.+++ ..+.+||++|+..+.. +.+.++..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~-~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~ 81 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGE-HLIEITDLPGVYSLVANAEGISQDEQIAAQSVID 81 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETT-EEEEEEECCCCSSCC------CHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECC-eEEEEEeCCCcccccccccCCCHHHHHHHHHHhh
Confidence 689999999999999999999753 11122211 2223556665 8999999999876542 33333311
Q ss_pred cccCCCCCCCccceeeEEee-cCc
Q psy16304 265 VSQTPLGRPDSRTCQVYLIM-CGV 287 (537)
Q Consensus 265 v~Q~~~l~~~~~~~il~v~D-s~~ 287 (537)
...+++++++| ++.
T Consensus 82 ---------~~~d~vi~VvDas~~ 96 (256)
T 3iby_A 82 ---------LEYDCIINVIDACHL 96 (256)
T ss_dssp ---------SCCSEEEEEEEGGGH
T ss_pred ---------CCCCEEEEEeeCCCc
Confidence 12889999999 443
No 233
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=98.28 E-value=2.2e-06 Score=84.00 Aligned_cols=57 Identities=18% Similarity=0.201 Sum_probs=39.8
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCCccc-cCceeee----eEEEEECCcEEEEEeecCCCc
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPIISL-VPTVGFN----RARVEYGNKYEVFLYDLGGSE 252 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~-~Pt~G~t----~~~i~i~g~~~i~~~D~~G~~ 252 (537)
+..+|+|||.+|||||||++.|+|..+... .+..|+| ...+.+++ ..+.+||++|..
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~-~~i~liDTPG~~ 81 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK-CHVEVVDTPDIF 81 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT-EEEEEEECCSCS
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC-cEEEEEECCCCC
Confidence 456899999999999999999999765322 1222322 23555665 899999999974
No 234
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=98.27 E-value=1.2e-06 Score=80.82 Aligned_cols=108 Identities=31% Similarity=0.642 Sum_probs=86.1
Q ss_pred CCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEeC
Q psy16304 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSHS 388 (537)
Q Consensus 309 ~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvds 388 (537)
....+.++|.+++||+++++.|.++......+|.+.....+..++ ..+.+|||+|.+.....|..+++..+++++|+|.
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~ 95 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRG-FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDS 95 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEEEETT-EEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEET
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccceEEEEECC-EEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEEC
Confidence 356688999999999999999999986666777776665565565 8999999999998888888889999999999999
Q ss_pred CCcchhhhhhhhh---hc----CCcEEEEeccc-chh
Q psy16304 389 LSGRPDDRCQVYL---MS----CNCQVYLISAK-NLS 417 (537)
Q Consensus 389 hd~~~~~~~~i~l---l~----~G~ii~~g~nk-dl~ 417 (537)
.+..+++....++ +. .+.++....|| |+.
T Consensus 96 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 132 (186)
T 1ksh_A 96 ADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLP 132 (186)
T ss_dssp TCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred cCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCC
Confidence 9988776655222 22 46677777777 763
No 235
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=98.26 E-value=7.8e-07 Score=82.72 Aligned_cols=107 Identities=23% Similarity=0.460 Sum_probs=83.8
Q ss_pred CccEEEeccCccCccchhhhhcCCCceee--ecccccccceeccCCceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEe
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEPIISL--VPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSH 387 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~rqrv--s~ti~la~all~~~e~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvd 387 (537)
...+.++|..++||+++++.|.++....+ .+|.++....+.... ..+.+|||+|.+.+..+|..+++..+++++|+|
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D 95 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGR-VAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVD 95 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEEEETT-EEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEEEeCC-EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEE
Confidence 45678999999999999999999995544 788887666665455 899999999999988899999999999999999
Q ss_pred CCCcchhhhhhhhh---hcC-----------CcEEEEeccc-chh
Q psy16304 388 SLSGRPDDRCQVYL---MSC-----------NCQVYLISAK-NLS 417 (537)
Q Consensus 388 shd~~~~~~~~i~l---l~~-----------G~ii~~g~nk-dl~ 417 (537)
..+..++..+..|+ +.. +.++...+|| |+.
T Consensus 96 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 140 (199)
T 4bas_A 96 SSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAA 140 (199)
T ss_dssp TTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTST
T ss_pred CCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCC
Confidence 99998877665332 222 6677777777 764
No 236
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.26 E-value=3.3e-07 Score=99.85 Aligned_cols=34 Identities=21% Similarity=0.266 Sum_probs=29.8
Q ss_pred ccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304 191 LFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG 229 (537)
Q Consensus 191 l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G 229 (537)
..+.+|++++|+|+||+|||||++.++|. ..+. |
T Consensus 276 g~i~~G~i~~i~G~~GsGKSTLl~~l~g~----~~~~-G 309 (525)
T 1tf7_A 276 GGFFKDSIILATGATGTGKTLLVSRFVEN----ACAN-K 309 (525)
T ss_dssp SSEESSCEEEEEECTTSSHHHHHHHHHHH----HHTT-T
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHH----HHhC-C
Confidence 35678999999999999999999999998 6664 5
No 237
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=98.24 E-value=9.2e-07 Score=79.88 Aligned_cols=107 Identities=28% Similarity=0.534 Sum_probs=84.5
Q ss_pred CccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEeCC
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSHSL 389 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvdsh 389 (537)
...+.++|..++||+++++.|.++......+|.++....+..++ ..+.+|||+|.+.+...|..+++..+++++|+|..
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~ 85 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKN-LKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSC 85 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEEETT-EEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETT
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccceEEEEECC-EEEEEEECCCChhhhHHHHHHhccCCEEEEEEECC
Confidence 35678999999999999999998886666677776655555565 89999999999888888888999999999999999
Q ss_pred Ccchhhhhhhhh---hc----CCcEEEEeccc-chh
Q psy16304 390 SGRPDDRCQVYL---MS----CNCQVYLISAK-NLS 417 (537)
Q Consensus 390 d~~~~~~~~i~l---l~----~G~ii~~g~nk-dl~ 417 (537)
+..++.....++ +. .+.++....|| |+.
T Consensus 86 ~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 121 (171)
T 1upt_A 86 DRDRIGISKSELVAMLEEEELRKAILVVFANKQDME 121 (171)
T ss_dssp CCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred CHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCc
Confidence 987776655222 22 46777777777 763
No 238
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.23 E-value=3.8e-07 Score=86.63 Aligned_cols=85 Identities=18% Similarity=0.280 Sum_probs=58.3
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCCcc----ccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCC
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPIIS----LVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL 270 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~----~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~ 270 (537)
+..+++|+|++|+|||||++.|.+..+.. +.|+.+... .+..+.+||++|++.++..+..++....
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~---- 80 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY------DGSGVTLVDFPGHVKLRYKLSDYLKTRA---- 80 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG------GGSSCEEEECCCCGGGTHHHHHHHHHHG----
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe------eCceEEEEECCCcHHHHHHHHHHHHhcc----
Confidence 45789999999999999999999875422 334444111 2467899999999988776666553211
Q ss_pred CCCCccceeeEEee-c-CcccccC
Q psy16304 271 GRPDSRTCQVYLIM-C-GVHQVSG 292 (537)
Q Consensus 271 l~~~~~~~il~v~D-s-~~~~~~~ 292 (537)
..++++++++| + +...+..
T Consensus 81 ---~~~~~~i~v~D~~~~~~~~~~ 101 (218)
T 1nrj_B 81 ---KFVKGLIFMVDSTVDPKKLTT 101 (218)
T ss_dssp ---GGEEEEEEEEETTSCTTCCHH
T ss_pred ---ccCCEEEEEEECCCChHHHHH
Confidence 12578899999 5 4444433
No 239
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=98.23 E-value=1.9e-06 Score=79.98 Aligned_cols=108 Identities=25% Similarity=0.527 Sum_probs=83.5
Q ss_pred CCccEEEeccCccCccchhhhhcCCCc-eeeecccccccceeccCCceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEe
Q psy16304 309 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSH 387 (537)
Q Consensus 309 ~~~~L~llGl~~~gKs~li~~LSgG~r-qrvs~ti~la~all~~~e~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvd 387 (537)
....+.++|..++||+++++.|.++.. ....+|.+.....+..++ ..+.+|||+|.+.+..+|..+++..+++++|+|
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D 99 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGN-VTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVD 99 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETT-EEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEEEeCC-EEEEEEECCCCHhHHHHHHHHHccCCEEEEEEE
Confidence 345688999999999999999998874 355666665555454455 899999999999999999999999999999999
Q ss_pred CCCcchhhhhhhhh---hc----CCcEEEEeccc-chh
Q psy16304 388 SLSGRPDDRCQVYL---MS----CNCQVYLISAK-NLS 417 (537)
Q Consensus 388 shd~~~~~~~~i~l---l~----~G~ii~~g~nk-dl~ 417 (537)
..+...++....++ +. .+.++....|| |+.
T Consensus 100 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 137 (188)
T 1zd9_A 100 AADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLP 137 (188)
T ss_dssp TTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTST
T ss_pred CCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCc
Confidence 99988777655222 22 45667777777 763
No 240
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=98.23 E-value=1.5e-06 Score=86.66 Aligned_cols=82 Identities=17% Similarity=0.201 Sum_probs=54.4
Q ss_pred CCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeee--EEEEECCcEEEEEeecCCCchhh------HHHHhhhhcccc
Q psy16304 196 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNR--ARVEYGNKYEVFLYDLGGSEDFR------TIWKQYLGTVSQ 267 (537)
Q Consensus 196 G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~--~~i~i~g~~~i~~~D~~G~~~~r------~~~~~~i~~v~Q 267 (537)
..+|+|+|++|||||||++.|+|.... .....|+|. ....+..+..+.+||++|+..+. .+++.++..
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~-v~~~pg~tv~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~--- 78 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQR-VGNWPGVTVERKSGLVKKNKDLEIQDLPGIYSMSPYSPEAKVARDYLLS--- 78 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCC-CCSSSCCCCSCEEEECTTCTTEEEEECCCCSCSSCSSHHHHHHHHHHHT---
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCc-ccCCCCCcEEEEEEEEecCCeEEEEECCCcCccCCCChHHHHHHHHHhc---
Confidence 357999999999999999999996421 222335443 23333323678999999987654 233444321
Q ss_pred CCCCCCCccceeeEEee-cCc
Q psy16304 268 TPLGRPDSRTCQVYLIM-CGV 287 (537)
Q Consensus 268 ~~~l~~~~~~~il~v~D-s~~ 287 (537)
...+++++++| ++.
T Consensus 79 ------~~~d~vi~V~D~t~~ 93 (272)
T 3b1v_A 79 ------QRADSILNVVDATNL 93 (272)
T ss_dssp ------TCCSEEEEEEEGGGH
T ss_pred ------CCCCEEEEEecCCch
Confidence 12788999999 443
No 241
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.21 E-value=3.7e-07 Score=91.60 Aligned_cols=36 Identities=19% Similarity=0.173 Sum_probs=32.1
Q ss_pred cccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304 190 SLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG 229 (537)
Q Consensus 190 ~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G 229 (537)
++.+.+|+.++|+|+||+|||||++.|+|. ..|+.|
T Consensus 29 ~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~----~~~~~G 64 (296)
T 1cr0_A 29 TLGARGGEVIMVTSGSGMGKSTFVRQQALQ----WGTAMG 64 (296)
T ss_dssp HCSBCTTCEEEEEESTTSSHHHHHHHHHHH----HHHTSC
T ss_pred hcCCCCCeEEEEEeCCCCCHHHHHHHHHHH----HHHHcC
Confidence 355779999999999999999999999998 777766
No 242
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=98.20 E-value=9.1e-07 Score=82.07 Aligned_cols=107 Identities=23% Similarity=0.473 Sum_probs=84.4
Q ss_pred CccEEEeccCccCccchhhhhcCCC--ceeeecccccccceeccCCceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEe
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEP--IISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSH 387 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~--rqrvs~ti~la~all~~~e~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvd 387 (537)
...+.++|..++||+++++.|.++. .....+|.++....+..++ ..+.+|||+|.+.+...|..+++..+++++|+|
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d 99 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSS-LSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVID 99 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEEEEECSS-CEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEE
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEEEEEECC-EEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEE
Confidence 4568899999999999999999987 4556677776666666565 899999999998888888899999999999999
Q ss_pred CCCcchhhhhhhhh---hc------CCcEEEEeccc-chh
Q psy16304 388 SLSGRPDDRCQVYL---MS------CNCQVYLISAK-NLS 417 (537)
Q Consensus 388 shd~~~~~~~~i~l---l~------~G~ii~~g~nk-dl~ 417 (537)
..+..++.....++ .. .+.++....|| |+.
T Consensus 100 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 139 (190)
T 2h57_A 100 SSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLR 139 (190)
T ss_dssp TTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTST
T ss_pred CCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcc
Confidence 99987776655222 21 35667777777 763
No 243
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=98.19 E-value=1.7e-07 Score=87.14 Aligned_cols=85 Identities=19% Similarity=0.321 Sum_probs=54.2
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCCcc----ccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCC
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPIIS----LVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL 270 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~----~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~ 270 (537)
+..+++++|++|||||||++.|++..+.. ..|+.+ ..+. +..+.+||++|+..++..+..++....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~-----~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~~---- 116 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA-----ADYD-GSGVTLVDFPGHVKLRYKLSDYLKTRA---- 116 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSSCC-----------------CCC-CTTCSEEEETTCCBSSCCHHHHHHHHG----
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee-----eeec-CCeEEEEECCCCchHHHHHHHHHHhhc----
Confidence 45689999999999999999999875421 223332 1112 367889999999877655555443211
Q ss_pred CCCCccceeeEEee-c-CcccccC
Q psy16304 271 GRPDSRTCQVYLIM-C-GVHQVSG 292 (537)
Q Consensus 271 l~~~~~~~il~v~D-s-~~~~~~~ 292 (537)
..++++++++| + +...+..
T Consensus 117 ---~~~~~~i~v~d~~~~~~~~~~ 137 (193)
T 2ged_A 117 ---KFVKGLIFMVDSTVDPKKLTT 137 (193)
T ss_dssp ---GGEEEEEEEEETTCCHHHHHH
T ss_pred ---ccCCEEEEEEECCCCchhHHH
Confidence 12688999999 4 4444333
No 244
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.19 E-value=3.6e-06 Score=87.54 Aligned_cols=56 Identities=27% Similarity=0.429 Sum_probs=38.9
Q ss_pred CCCe-EEEEeCCCCcHHHHHHHHhCCCCc---cccCceeeeeEEEEECCcEEEEEeecCCC
Q psy16304 195 RSVP-ILVLGLDNAGKSSIIKRILGEPII---SLVPTVGFNRARVEYGNKYEVFLYDLGGS 251 (537)
Q Consensus 195 ~G~~-vgLVG~NGAGKSTLL~~L~G~~~~---~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~ 251 (537)
.|.+ ++|+|++|||||||+|.|+|..+. ...+|.+++...+.++| ..+.+||++|+
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g-~~v~l~DT~G~ 236 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN-RKIMLVDTVGF 236 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT-EEEEEEECCCB
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC-EEEEEEeCCCc
Confidence 4566 999999999999999999997531 01122222333889987 89999999997
No 245
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=98.18 E-value=3.5e-06 Score=83.16 Aligned_cols=88 Identities=20% Similarity=0.269 Sum_probs=56.0
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee----eeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCC
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG----FNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPL 270 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G----~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~ 270 (537)
+..+|+|+|..|+|||||++.|+|..+....+..| .....+.+++ ..+.+||++|+.++......++..+.+.
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~l~liDTpG~~~~~~~~~~~~~~i~~~-- 111 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG-FTINIIDTPGLVEAGYVNHQALELIKGF-- 111 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT-EEEEEEECCCSEETTEECHHHHHHHHHH--
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC-eeEEEEECCCCCCcccchHHHHHHHHHH--
Confidence 34679999999999999999999986543334333 2233455665 8999999999976543222222211110
Q ss_pred CCCCccceeeEEeec
Q psy16304 271 GRPDSRTCQVYLIMC 285 (537)
Q Consensus 271 l~~~~~~~il~v~Ds 285 (537)
+.....++++++++.
T Consensus 112 l~~~~~~~il~V~~~ 126 (262)
T 3def_A 112 LVNRTIDVLLYVDRL 126 (262)
T ss_dssp TTTCEECEEEEEEES
T ss_pred HhcCCCCEEEEEEcC
Confidence 011236788888773
No 246
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=98.18 E-value=1.2e-06 Score=81.74 Aligned_cols=107 Identities=25% Similarity=0.449 Sum_probs=85.6
Q ss_pred CccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEeCC
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSHSL 389 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvdsh 389 (537)
...+.++|.+++||+++++.|.++......+|.+.....+..++ ..+.+|||+|.+..+.+|..+++..+++++|+|.+
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~ 101 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGN-IKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAA 101 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETT-EEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETT
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECC-EEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECC
Confidence 45678999999999999999999886667777777666666676 89999999999888888888889999999999999
Q ss_pred Ccchhhhhhhhh---h----cCCcEEEEeccc-chh
Q psy16304 390 SGRPDDRCQVYL---M----SCNCQVYLISAK-NLS 417 (537)
Q Consensus 390 d~~~~~~~~i~l---l----~~G~ii~~g~nk-dl~ 417 (537)
+..+++....++ + ..+.++...+|| |+.
T Consensus 102 ~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 137 (190)
T 1m2o_B 102 DPERFDEARVELDALFNIAELKDVPFVILGNKIDAP 137 (190)
T ss_dssp CGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTST
T ss_pred ChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCc
Confidence 998777655222 1 146677777887 763
No 247
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=98.17 E-value=6.2e-06 Score=79.11 Aligned_cols=56 Identities=16% Similarity=0.116 Sum_probs=40.4
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee----eeeEEEEECCcEEEEEeecCCCc
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG----FNRARVEYGNKYEVFLYDLGGSE 252 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G----~t~~~i~i~g~~~i~~~D~~G~~ 252 (537)
+..+|+|+|++|||||||++.|++..+. ..+..+ +....+.+.+ ..+.+||++|+.
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~~~-~~~~~~~t~~~~~~~~~~~~-~~~~l~DtpG~~ 87 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRANVD-VQSYSFTTKNLYVGHFDHKL-NKYQIIDTPGLL 87 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTCEE-EECC-----CEEEEEEEETT-EEEEEEECTTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCCcceeeeeeeeecCC-CeEEEEECCCCc
Confidence 4578999999999999999999998653 222233 2223344454 899999999983
No 248
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=98.16 E-value=2.6e-06 Score=84.88 Aligned_cols=80 Identities=19% Similarity=0.276 Sum_probs=53.4
Q ss_pred CCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeE----EEEECCcEEEEEeecCCCchhhH----------HHHhh
Q psy16304 196 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA----RVEYGNKYEVFLYDLGGSEDFRT----------IWKQY 261 (537)
Q Consensus 196 G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~----~i~i~g~~~i~~~D~~G~~~~r~----------~~~~~ 261 (537)
..+|+|+|.+|||||||++.|+|..+ ......|+|.+ .+.+.+ ..+.+||++|+..+.. .++.+
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~-~v~~~~g~t~~~~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~ 80 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQ-RVGNWAGVTVERKEGQFSTTD-HQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCE-EEEECTTSSSEEEEEEEECSS-CEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeeEEEEEEEEEeCC-CceEEEECcCCCccccccccCCHHHHHHHHH
Confidence 35799999999999999999999853 12223343332 344444 7889999999876541 12222
Q ss_pred hhccccCCCCCCCccceeeEEee-cC
Q psy16304 262 LGTVSQTPLGRPDSRTCQVYLIM-CG 286 (537)
Q Consensus 262 i~~v~Q~~~l~~~~~~~il~v~D-s~ 286 (537)
+. ...++++++++| +.
T Consensus 81 ~~---------~~~~d~ii~VvD~~~ 97 (274)
T 3i8s_A 81 IL---------SGDADLLINVVDASN 97 (274)
T ss_dssp HH---------HTCCSEEEEEEEGGG
T ss_pred Hh---------hcCCCEEEEEecCCC
Confidence 21 122789999999 44
No 249
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=98.16 E-value=3.1e-06 Score=83.67 Aligned_cols=81 Identities=21% Similarity=0.299 Sum_probs=53.9
Q ss_pred CCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeee----EEEEECCcEEEEEeecCCCchhhH------HHHhhhhcc
Q psy16304 196 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNR----ARVEYGNKYEVFLYDLGGSEDFRT------IWKQYLGTV 265 (537)
Q Consensus 196 G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~----~~i~i~g~~~i~~~D~~G~~~~r~------~~~~~i~~v 265 (537)
..+++|+|.+|+|||||++.|+|..+. .....|+|. ..+...+ ..+.+||++|+..+.. +.+.++..
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~~~-~~~~pg~tv~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~- 81 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTKQY-VANWPGVTVEKKEGVFTYKG-YTINLIDLPGTYSLGYSSIDEKIARDYLLK- 81 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTCEE-EEECTTSCCEEEEEEEEETT-EEEEEEECCCCSSCCSSSHHHHHHHHHHHH-
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCc-ccCCCCceEEEEEEEEEECC-eEEEEEECCCcCccCCCCHHHHHHHHHHhh-
Confidence 357999999999999999999997542 111223332 2344444 8999999999876542 22333321
Q ss_pred ccCCCCCCCccceeeEEee-cCc
Q psy16304 266 SQTPLGRPDSRTCQVYLIM-CGV 287 (537)
Q Consensus 266 ~Q~~~l~~~~~~~il~v~D-s~~ 287 (537)
...+++++++| ++.
T Consensus 82 --------~~~d~ii~V~D~t~~ 96 (258)
T 3a1s_A 82 --------GDADLVILVADSVNP 96 (258)
T ss_dssp --------SCCSEEEEEEETTSC
T ss_pred --------cCCCEEEEEeCCCch
Confidence 12788999999 443
No 250
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=98.15 E-value=1.7e-06 Score=82.24 Aligned_cols=82 Identities=22% Similarity=0.247 Sum_probs=55.2
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCC-CccccCceeeeeEE--EEEC--CcEEEEEeecCCCc----------hhhHHHH
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFNRAR--VEYG--NKYEVFLYDLGGSE----------DFRTIWK 259 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~-~~~~~Pt~G~t~~~--i~i~--g~~~i~~~D~~G~~----------~~r~~~~ 259 (537)
...+|+|+|+.|||||||++.|+|.. .+...++.|++... ..+. ++..+.+||++|.. .++..+.
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 107 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLS 107 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHH
Confidence 45789999999999999999999986 34555666654432 2222 24789999999953 3343444
Q ss_pred hhhhccccCCCCCCCccceeeEEee
Q psy16304 260 QYLGTVSQTPLGRPDSRTCQVYLIM 284 (537)
Q Consensus 260 ~~i~~v~Q~~~l~~~~~~~il~v~D 284 (537)
.++.. ....+.+++++|
T Consensus 108 ~~~~~--------~~~~d~vi~v~d 124 (223)
T 4dhe_A 108 SYLQT--------RPQLCGMILMMD 124 (223)
T ss_dssp HHHHH--------CTTEEEEEEEEE
T ss_pred HHHhc--------CcCcCEEEEEEe
Confidence 44433 112566888888
No 251
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.15 E-value=1.2e-06 Score=80.35 Aligned_cols=108 Identities=27% Similarity=0.532 Sum_probs=82.1
Q ss_pred CCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEeC
Q psy16304 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSHS 388 (537)
Q Consensus 309 ~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvds 388 (537)
....+.++|..++||+++++.|.++......+|.++....+..++ ..+.+|||+|.+.+...|..+++..+++++|+|.
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~ 95 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKN-LKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDS 95 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEEEETT-EEEEEEEEC----CCTTGGGTTTTEEEEEEEEET
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccceEEEEECC-EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence 356788999999999999999999988778888887666665565 8999999999987777788888888999999999
Q ss_pred CCcchhhhhhhhh---h----cCCcEEEEeccc-chh
Q psy16304 389 LSGRPDDRCQVYL---M----SCNCQVYLISAK-NLS 417 (537)
Q Consensus 389 hd~~~~~~~~i~l---l----~~G~ii~~g~nk-dl~ 417 (537)
.+..+++....++ . ..+.++....|| |+.
T Consensus 96 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 132 (183)
T 1moz_A 96 TDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQP 132 (183)
T ss_dssp TCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTST
T ss_pred CCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCC
Confidence 8887776555222 2 245677777777 763
No 252
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=98.15 E-value=7e-06 Score=80.48 Aligned_cols=91 Identities=16% Similarity=0.215 Sum_probs=53.6
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCC--ccccCc---eeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCC
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPI--ISLVPT---VGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTP 269 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~--~~~~Pt---~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~ 269 (537)
+..+|+|+|++|||||||++.|.|... ....|+ .......+.+++ ..+.+||++|+.+...........+....
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~i~iiDTpG~~~~~~~~~~~~~~i~~~~ 99 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN-REIVIIDTPDMFSWKDHCEALYKEVQRCY 99 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT-EEEEEEECCGGGGSSCCCHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC-CEEEEEECcCCCCCCCCHHHHHHHHHHHH
Confidence 346799999999999999999999763 222232 222223555665 89999999998643211111000000000
Q ss_pred CCCCCccceeeEEeecC
Q psy16304 270 LGRPDSRTCQVYLIMCG 286 (537)
Q Consensus 270 ~l~~~~~~~il~v~Ds~ 286 (537)
......++++++|+|..
T Consensus 100 ~~~~~~~d~il~V~d~~ 116 (260)
T 2xtp_A 100 LLSAPGPHVLLLVTQLG 116 (260)
T ss_dssp HHHTTCCSEEEEEEETT
T ss_pred HhcCCCCcEEEEEEeCC
Confidence 00012278999999943
No 253
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.14 E-value=2.9e-06 Score=87.97 Aligned_cols=81 Identities=19% Similarity=0.204 Sum_probs=54.7
Q ss_pred CCeEEEEeCCCCcHHHHHHHHhCCCC-------ccccCceeeeeEEEEECCc----------------EEEEEeecCCCc
Q psy16304 196 SVPILVLGLDNAGKSSIIKRILGEPI-------ISLVPTVGFNRARVEYGNK----------------YEVFLYDLGGSE 252 (537)
Q Consensus 196 G~~vgLVG~NGAGKSTLL~~L~G~~~-------~~~~Pt~G~t~~~i~i~g~----------------~~i~~~D~~G~~ 252 (537)
|.+++|||.+|||||||++.|++..+ ++..|+.| .+.+++. ..+.+||++|+.
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g----~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~ 77 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTG----VVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLV 77 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSS----EEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEE----EEecCCcccceeeeeecccceeeeEEEEEECCCCc
Confidence 46899999999999999999998542 34567777 7777652 579999999987
Q ss_pred hhhHHHHhhhhccccCCCCCCCccceeeEEee
Q psy16304 253 DFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIM 284 (537)
Q Consensus 253 ~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~D 284 (537)
+..... +.++..+ ......++++++|+|
T Consensus 78 ~~a~~~-~gl~~~f---l~~ir~ad~il~VvD 105 (363)
T 1jal_A 78 AGASKG-EGLGNKF---LANIRETDAIGHVVR 105 (363)
T ss_dssp TTHHHH-GGGTCCH---HHHHHTCSEEEEEEE
T ss_pred cccccc-chHHHHH---HHHHHhcCeEEEEEe
Confidence 653210 1111100 000123889999999
No 254
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.13 E-value=4.4e-07 Score=87.71 Aligned_cols=33 Identities=27% Similarity=0.191 Sum_probs=28.1
Q ss_pred CCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccC--cee
Q psy16304 193 DFRSVPILVLGLDNAGKSSIIKRILGEPIISLVP--TVG 229 (537)
Q Consensus 193 ~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~P--t~G 229 (537)
..+|+.++|+||||||||||+++|+|. ..| ..|
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~----~~p~~~~g 47 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKT----QPLYDTQV 47 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHH----SCTTTEEE
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcc----CCCCceEE
Confidence 448999999999999999999999998 665 566
No 255
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=98.13 E-value=1.2e-06 Score=81.10 Aligned_cols=108 Identities=31% Similarity=0.541 Sum_probs=85.1
Q ss_pred CCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEeC
Q psy16304 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSHS 388 (537)
Q Consensus 309 ~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvds 388 (537)
....+.++|.+++||+++++.|.++......+|.+.....+..++ ..+.+|||+|.+.....|..+++..+++++|+|.
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~ 99 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQYKN-ISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDS 99 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCEEEEEETT-EEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEET
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceEEEEEEECC-EEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeC
Confidence 456788999999999999999999987667778776655555565 8999999999987777788888899999999999
Q ss_pred CCcchhhhhhhhh---hc----CCcEEEEeccc-chh
Q psy16304 389 LSGRPDDRCQVYL---MS----CNCQVYLISAK-NLS 417 (537)
Q Consensus 389 hd~~~~~~~~i~l---l~----~G~ii~~g~nk-dl~ 417 (537)
.+..++.....++ +. .+.++....|| |+.
T Consensus 100 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 136 (189)
T 2x77_A 100 TDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLP 136 (189)
T ss_dssp TCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTST
T ss_pred CCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCc
Confidence 9987776655222 22 36777777777 763
No 256
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.12 E-value=1.3e-06 Score=90.62 Aligned_cols=33 Identities=30% Similarity=0.298 Sum_probs=29.2
Q ss_pred CCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304 193 DFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG 229 (537)
Q Consensus 193 ~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G 229 (537)
..+|..++|+||||||||||+++|+|. +.|+.|
T Consensus 120 ~~~~g~i~I~GptGSGKTTlL~~l~g~----~~~~~~ 152 (356)
T 3jvv_A 120 DVPRGLVLVTGPTGSGKSTTLAAMLDY----LNNTKY 152 (356)
T ss_dssp HCSSEEEEEECSTTSCHHHHHHHHHHH----HHHHCC
T ss_pred hCCCCEEEEECCCCCCHHHHHHHHHhc----ccCCCC
Confidence 457789999999999999999999998 888744
No 257
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.12 E-value=3.8e-07 Score=103.38 Aligned_cols=38 Identities=26% Similarity=0.437 Sum_probs=31.0
Q ss_pred ccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCcccc-Ccee
Q psy16304 185 LPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLV-PTVG 229 (537)
Q Consensus 185 ~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~-Pt~G 229 (537)
+++.+++. |++++|+||||||||||+++++|. .. +..|
T Consensus 568 vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl----~~~~~~G 606 (765)
T 1ewq_A 568 VPNDLEMA---HELVLITGPNMAGKSTFLRQTALI----ALLAQVG 606 (765)
T ss_dssp CCEEEEES---SCEEEEESCSSSSHHHHHHHHHHH----HHHHTTT
T ss_pred EeeeccCC---CcEEEEECCCCCChHHHHHHHHhh----hhhcccC
Confidence 34455555 999999999999999999999997 53 5666
No 258
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.10 E-value=1e-06 Score=90.71 Aligned_cols=37 Identities=19% Similarity=0.176 Sum_probs=33.7
Q ss_pred ccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304 189 LSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG 229 (537)
Q Consensus 189 ~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G 229 (537)
+++.+.+|++++|+|+||||||||+++|+|. ..|+.|
T Consensus 48 i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~----~~~~~g 84 (337)
T 2qm8_A 48 VLPQTGRAIRVGITGVPGVGKSTTIDALGSL----LTAAGH 84 (337)
T ss_dssp HGGGCCCSEEEEEECCTTSCHHHHHHHHHHH----HHHTTC
T ss_pred CCcccCCCeEEEEECCCCCCHHHHHHHHHHh----hhhCCC
Confidence 4566779999999999999999999999998 888888
No 259
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.10 E-value=1.9e-07 Score=95.23 Aligned_cols=39 Identities=28% Similarity=0.489 Sum_probs=30.1
Q ss_pred CeEEEEeCCCCcHHHHHHHHhCCC----CccccCceeeeeEEEEECC
Q psy16304 197 VPILVLGLDNAGKSSIIKRILGEP----IISLVPTVGFNRARVEYGN 239 (537)
Q Consensus 197 ~~vgLVG~NGAGKSTLL~~L~G~~----~~~~~Pt~G~t~~~i~i~g 239 (537)
++++|+|+||||||||++.|.|.. .+.+.|+.| ++.++|
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G----~i~idg 47 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFG----EVSVDD 47 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCC----SCCEEE
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCc----ccCccH
Confidence 578999999999999999999872 122378888 555553
No 260
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.10 E-value=2.7e-06 Score=96.98 Aligned_cols=34 Identities=18% Similarity=0.242 Sum_probs=30.1
Q ss_pred ccccccccCCCCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304 185 LPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGE 219 (537)
Q Consensus 185 ~~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~ 219 (537)
+++.+++. .+|++++|+||||||||||+++++|.
T Consensus 597 vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 597 IANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp CCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred eeeccccc-CCCcEEEEECCCCCChHHHHHHHHHH
Confidence 45566777 78999999999999999999999986
No 261
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=98.09 E-value=2.6e-06 Score=84.46 Aligned_cols=86 Identities=22% Similarity=0.271 Sum_probs=54.0
Q ss_pred CCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeE----EEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304 196 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA----RVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG 271 (537)
Q Consensus 196 G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~----~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l 271 (537)
..+++++|..|+|||||++.|+|..+....++.|++.+ .+... +..+.+||++|+.++.......+..+.. .+
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~l~iiDTpG~~~~~~~~~~~~~~i~~--~~ 115 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRA-GFTLNIIDTPGLIEGGYINDMALNIIKS--FL 115 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEET-TEEEEEEECCCSEETTEECHHHHHHHHH--HT
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeC-CeEEEEEECCCCCCCccchHHHHHHHHH--Hh
Confidence 45799999999999999999999866444455554332 23334 4899999999987543211111111000 01
Q ss_pred CCCccceeeEEee
Q psy16304 272 RPDSRTCQVYLIM 284 (537)
Q Consensus 272 ~~~~~~~il~v~D 284 (537)
....++++++++|
T Consensus 116 ~~~~~d~il~v~~ 128 (270)
T 1h65_A 116 LDKTIDVLLYVDR 128 (270)
T ss_dssp TTCEECEEEEEEE
T ss_pred hcCCCCEEEEEEe
Confidence 1123778888877
No 262
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.08 E-value=8.5e-07 Score=84.58 Aligned_cols=33 Identities=12% Similarity=0.043 Sum_probs=28.8
Q ss_pred CCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304 193 DFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG 229 (537)
Q Consensus 193 ~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G 229 (537)
+.+|+.++|+|+||||||||++.|++. ..+..|
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~----~~~~~~ 52 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAK----GLRDGD 52 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHH----HHHHTC
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHH----HHHCCC
Confidence 448999999999999999999999987 666655
No 263
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.08 E-value=8.3e-07 Score=88.62 Aligned_cols=28 Identities=25% Similarity=0.387 Sum_probs=24.5
Q ss_pred cccCCCCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304 190 SLFDFRSVPILVLGLDNAGKSSIIKRILGE 219 (537)
Q Consensus 190 ~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~ 219 (537)
++...+| ++|+||||+|||||+++|+|.
T Consensus 40 ~l~~~~G--vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 40 GLVTPAG--VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp TCCCCSE--EEEESSTTSCHHHHHHHHHHH
T ss_pred CCCCCCe--EEEECCCCCcHHHHHHHHHHH
Confidence 3455567 999999999999999999997
No 264
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=98.07 E-value=1.4e-06 Score=95.05 Aligned_cols=79 Identities=22% Similarity=0.403 Sum_probs=54.5
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeeeEEE--------EECC---cEEEEEeecCCCchhhHHHHhhh
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNRARV--------EYGN---KYEVFLYDLGGSEDFRTIWKQYL 262 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~~~i--------~i~g---~~~i~~~D~~G~~~~r~~~~~~i 262 (537)
...+|+|+|.+|||||||++.+++..+ ..+.||.|.+..+. .+++ +..+.+||++|++.++.....++
T Consensus 40 ~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~l 119 (535)
T 3dpu_A 40 QEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFM 119 (535)
T ss_dssp CEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHHHc
Confidence 457899999999999999999999866 45668888554433 2222 58899999999987776655555
Q ss_pred hccccCCCCCCCccceeeEEee
Q psy16304 263 GTVSQTPLGRPDSRTCQVYLIM 284 (537)
Q Consensus 263 ~~v~Q~~~l~~~~~~~il~v~D 284 (537)
.. ++++++|+|
T Consensus 120 ~~-----------~d~ii~V~D 130 (535)
T 3dpu_A 120 TR-----------SSVYMLLLD 130 (535)
T ss_dssp HS-----------SEEEEEEEC
T ss_pred cC-----------CcEEEEEEe
Confidence 54 889999999
No 265
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.06 E-value=3.6e-06 Score=89.42 Aligned_cols=77 Identities=21% Similarity=0.393 Sum_probs=51.7
Q ss_pred CCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeE----EEEECCcEEEEEeecCCC----------chhhHHHH-h
Q psy16304 196 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA----RVEYGNKYEVFLYDLGGS----------EDFRTIWK-Q 260 (537)
Q Consensus 196 G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~----~i~i~g~~~i~~~D~~G~----------~~~r~~~~-~ 260 (537)
..+++|+|.+|+|||||++.|+|..+....+..|+|++ .+.++| ..+.+||++|+ +.+..... .
T Consensus 175 ~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~-~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~ 253 (436)
T 2hjg_A 175 VIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ-QEFVIVDTAGMRKKGKVYETTEKYSVLRALK 253 (436)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETT-EEEEETTHHHHTCBTTBCCCCSHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECC-eEEEEEECCCcCcCccccchHHHHHHHHHHH
Confidence 35899999999999999999999876555566666654 455665 78999999997 33322211 2
Q ss_pred hhhccccCCCCCCCccceeeEEee
Q psy16304 261 YLGTVSQTPLGRPDSRTCQVYLIM 284 (537)
Q Consensus 261 ~i~~v~Q~~~l~~~~~~~il~v~D 284 (537)
.+.. ++++++++|
T Consensus 254 ~~~~-----------ad~~llv~D 266 (436)
T 2hjg_A 254 AIDR-----------SEVVAVVLD 266 (436)
T ss_dssp HHHH-----------CSEEEEEEE
T ss_pred HHHh-----------CCEEEEEEc
Confidence 3333 788999999
No 266
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=98.05 E-value=2.3e-06 Score=92.24 Aligned_cols=81 Identities=17% Similarity=0.270 Sum_probs=58.9
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeee----EEEEECCcEEEEEeecCCCc-hhhH--------HHHhh
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNR----ARVEYGNKYEVFLYDLGGSE-DFRT--------IWKQY 261 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~----~~i~i~g~~~i~~~D~~G~~-~~r~--------~~~~~ 261 (537)
.|.+|+|+|++|||||||+|.|++.++....+..|+|+ ..+.++| ..+.+||++|+. +... ....+
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g-~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG-ILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT-EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC-eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 56889999999999999999999976544444444333 4677775 999999999987 4321 11233
Q ss_pred hhccccCCCCCCCccceeeEEee-cCc
Q psy16304 262 LGTVSQTPLGRPDSRTCQVYLIM-CGV 287 (537)
Q Consensus 262 i~~v~Q~~~l~~~~~~~il~v~D-s~~ 287 (537)
+.. ++.+++++| ++.
T Consensus 321 ~~~-----------aD~vl~VvD~s~~ 336 (482)
T 1xzp_A 321 IEK-----------ADIVLFVLDASSP 336 (482)
T ss_dssp HHH-----------CSEEEEEEETTSC
T ss_pred hhc-----------ccEEEEEecCCCC
Confidence 444 899999999 443
No 267
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.04 E-value=1.1e-06 Score=91.19 Aligned_cols=45 Identities=18% Similarity=0.208 Sum_probs=39.9
Q ss_pred ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECC
Q psy16304 187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGN 239 (537)
Q Consensus 187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g 239 (537)
..+++.+.+|+.++|+|+||||||||+++|.|. +.|+.| .+.++|
T Consensus 166 ~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~----~~~~~g----~I~ie~ 210 (361)
T 2gza_A 166 SFLRRAVQLERVIVVAGETGSGKTTLMKALMQE----IPFDQR----LITIED 210 (361)
T ss_dssp HHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTT----SCTTSC----EEEEES
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhc----CCCCce----EEEECC
Confidence 456777889999999999999999999999999 999999 777654
No 268
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.03 E-value=1.2e-06 Score=84.53 Aligned_cols=32 Identities=16% Similarity=0.295 Sum_probs=21.9
Q ss_pred cccccCCCCCeEEEEeCCCCcHHHHHHHHh-CC
Q psy16304 188 HLSLFDFRSVPILVLGLDNAGKSSIIKRIL-GE 219 (537)
Q Consensus 188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~-G~ 219 (537)
.+++.+.+|++++|+||||||||||+++|+ |.
T Consensus 19 ~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 19 PGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp ---CCEECCCEEEEECSCC----CHHHHHHC--
T ss_pred CCCcccCCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 456778899999999999999999999999 98
No 269
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=98.02 E-value=1.4e-05 Score=75.04 Aligned_cols=108 Identities=20% Similarity=0.313 Sum_probs=75.6
Q ss_pred CccEEEeccCccCccchhhhhcCCC-ceeeecccccc--cceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEE
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFN--RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLV 385 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la--~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlV 385 (537)
...+.++|..++||+++++.|.++. .....+|++.. ...+..++ ...+.+|||+|.+.+..+|..+++..+++++|
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv 108 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILA 108 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEE
Confidence 3567899999999999999999887 33444554422 23333333 25888999999999999999999999999999
Q ss_pred EeCCCcchhhhhhhhhh------cCCcEEEEeccc-chh
Q psy16304 386 SHSLSGRPDDRCQVYLM------SCNCQVYLISAK-NLS 417 (537)
Q Consensus 386 vdshd~~~~~~~~i~ll------~~G~ii~~g~nk-dl~ 417 (537)
+|..+..+++.+..|+. ..+.++...+|| |+.
T Consensus 109 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 147 (201)
T 2hup_A 109 YDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLS 147 (201)
T ss_dssp EETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccc
Confidence 99998888776653332 145667777777 763
No 270
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=98.01 E-value=9.1e-06 Score=74.68 Aligned_cols=50 Identities=28% Similarity=0.446 Sum_probs=36.7
Q ss_pred eEEEEeCCCCcHHHHHHHHhCCCC-ccccCceeeeeEEEEECCcEEEEEeecCC
Q psy16304 198 PILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNRARVEYGNKYEVFLYDLGG 250 (537)
Q Consensus 198 ~vgLVG~NGAGKSTLL~~L~G~~~-~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G 250 (537)
+++++|++|||||||++.+.+..+ ....|+..+....+.+. .+.+||++|
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~~---~~~l~Dt~G 53 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWK---NHKIIDMPG 53 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEET---TEEEEECCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEecC---CEEEEECCC
Confidence 689999999999999999999865 23344333333344443 578999999
No 271
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=98.01 E-value=1.3e-05 Score=71.92 Aligned_cols=107 Identities=14% Similarity=0.162 Sum_probs=59.8
Q ss_pred ccEEEeccCccCccchhhhhcCCCceeeecccccccc-eeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEeC
Q psy16304 311 VPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA-RVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSHS 388 (537)
Q Consensus 311 ~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~a-ll~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvds 388 (537)
..+.++|.+++||+++++.|.+.......++.+.... .+..++ ...+.+|||+|.+....++..+++..+++++|+|.
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 82 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSV 82 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCCC----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEEET
T ss_pred EEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEEC
Confidence 4577999999999999999998876666555554332 122232 36788999999998888999999999999999999
Q ss_pred CCcchhhhhhhhh---hc----CCcEEEEeccc-chh
Q psy16304 389 LSGRPDDRCQVYL---MS----CNCQVYLISAK-NLS 417 (537)
Q Consensus 389 hd~~~~~~~~i~l---l~----~G~ii~~g~nk-dl~ 417 (537)
.+..+++.+..|+ .. .+.++...+|| |+.
T Consensus 83 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 119 (166)
T 3q72_A 83 TDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 119 (166)
T ss_dssp TCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCC
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccc
Confidence 9988877666332 22 35667777777 763
No 272
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=98.01 E-value=2.8e-06 Score=91.54 Aligned_cols=108 Identities=28% Similarity=0.547 Sum_probs=89.1
Q ss_pred CCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEeC
Q psy16304 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSHS 388 (537)
Q Consensus 309 ~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvds 388 (537)
....+.++|.+++||+++++.|.+++.....+|++.....+..++ ..+.+|||+|++.+..+|..+++..+++++|+|.
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~~~T~~~~~~~~~~~~-~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~ 399 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKN-VKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDC 399 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEESSS-CEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEET
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCCCCCcCCccceeEEEEEeCC-EEEEEEECCCcHHHHHHHHHHhccCCEEEEEEEC
Confidence 346688999999999999999999997667778887777776565 8999999999998888899999999999999999
Q ss_pred CCcchhhhhhhhhh---c----CCcEEEEeccc-chh
Q psy16304 389 LSGRPDDRCQVYLM---S----CNCQVYLISAK-NLS 417 (537)
Q Consensus 389 hd~~~~~~~~i~ll---~----~G~ii~~g~nk-dl~ 417 (537)
.+..+++.+..++. . .+.++....|| |+.
T Consensus 400 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 436 (497)
T 3lvq_E 400 ADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 436 (497)
T ss_dssp TCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSS
T ss_pred cchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCC
Confidence 99888877663322 2 47788888888 763
No 273
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.01 E-value=1.7e-06 Score=89.37 Aligned_cols=34 Identities=15% Similarity=-0.009 Sum_probs=29.8
Q ss_pred ccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccc--cCce
Q psy16304 191 LFDFRSVPILVLGLDNAGKSSIIKRILGEPIISL--VPTV 228 (537)
Q Consensus 191 l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~--~Pt~ 228 (537)
..+.+|.+++|+|+||||||||++.+++. . .|+.
T Consensus 126 ggi~~G~i~~I~G~~GsGKTTL~~~l~~~----~~~~~~~ 161 (349)
T 1pzn_A 126 GGIETQAITEVFGEFGSGKTQLAHTLAVM----VQLPPEE 161 (349)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHH----TTSCGGG
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHH----hccchhc
Confidence 45668999999999999999999999997 5 5666
No 274
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.00 E-value=9.6e-07 Score=94.88 Aligned_cols=45 Identities=18% Similarity=0.194 Sum_probs=39.8
Q ss_pred cccccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECC
Q psy16304 186 PTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGN 239 (537)
Q Consensus 186 ~~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g 239 (537)
...+++.+.+ ++++|+||||||||||+++|+|. ..|+.| +|.++|
T Consensus 20 l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl----~~p~~G----~I~~~g 64 (483)
T 3euj_A 20 FFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTA----LIPDLT----LLNFRN 64 (483)
T ss_dssp EEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHH----HCCCTT----TCCCCC
T ss_pred ccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcC----CCCCCC----EEEECC
Confidence 3456777888 99999999999999999999999 999999 777776
No 275
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=97.99 E-value=3.2e-06 Score=90.63 Aligned_cols=87 Identities=16% Similarity=0.215 Sum_probs=50.5
Q ss_pred CCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeee----EEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCC
Q psy16304 194 FRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNR----ARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTP 269 (537)
Q Consensus 194 ~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~----~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~ 269 (537)
..|.+|+|+|++|||||||+|.|+|..+....+..|+|+ ..+.++| ..+.+|||+|+.+....+.. ++ .+..
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g-~~v~liDT~G~~~~~~~ve~-~g--i~~~ 297 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG-IPVQVLDTAGIRETSDQVEK-IG--VERS 297 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT-EEEEECC----------------------
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC-EEEEEEECCccccchhHHHH-HH--HHHH
Confidence 357889999999999999999999865433333344333 4567776 99999999998654432222 11 0111
Q ss_pred CCCCCccceeeEEee
Q psy16304 270 LGRPDSRTCQVYLIM 284 (537)
Q Consensus 270 ~l~~~~~~~il~v~D 284 (537)
......++.+++++|
T Consensus 298 ~~~~~~aD~vl~VvD 312 (462)
T 3geh_A 298 RQAANTADLVLLTID 312 (462)
T ss_dssp -CCCCSCSEEEEEEE
T ss_pred hhhhhcCCEEEEEec
Confidence 122344889999999
No 276
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.99 E-value=2.4e-06 Score=80.26 Aligned_cols=28 Identities=14% Similarity=0.266 Sum_probs=24.9
Q ss_pred cCCCCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304 192 FDFRSVPILVLGLDNAGKSSIIKRILGE 219 (537)
Q Consensus 192 ~~~~G~~vgLVG~NGAGKSTLL~~L~G~ 219 (537)
...+|++++|+||||||||||+++|+|.
T Consensus 3 ~m~~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 3 AMNKANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp --CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 3558999999999999999999999997
No 277
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=97.98 E-value=7.2e-06 Score=83.93 Aligned_cols=108 Identities=29% Similarity=0.589 Sum_probs=81.7
Q ss_pred CCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEeC
Q psy16304 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSHS 388 (537)
Q Consensus 309 ~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvds 388 (537)
....+.++|..++||+++++.|.++......+|++.....+..++ ..+.+|||+|.+.+..++..+++..+++++|+|.
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT~~~~~~~~~~~~-~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~ 242 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN-ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 242 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEEEEETTEEEEEEEETT-EEEEEEECC-----CCSHHHHHTTEEEEEEEEET
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCcccccceEEEEEecCc-EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence 345688999999999999999999986655677776666665555 8999999999988888899999999999999999
Q ss_pred CCcchhhhhhhhhh---c----CCcEEEEeccc-chh
Q psy16304 389 LSGRPDDRCQVYLM---S----CNCQVYLISAK-NLS 417 (537)
Q Consensus 389 hd~~~~~~~~i~ll---~----~G~ii~~g~nk-dl~ 417 (537)
++...+..+..++. . .+.++...+|| |+.
T Consensus 243 ~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~ 279 (329)
T 3o47_A 243 NDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLP 279 (329)
T ss_dssp TCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred CchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCC
Confidence 99888876653222 1 36677777887 763
No 278
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=97.97 E-value=2e-06 Score=88.66 Aligned_cols=78 Identities=23% Similarity=0.342 Sum_probs=54.9
Q ss_pred CeEEEEeCCCCcHHHHHHHHhCCC-------CccccCceeeeeEEEEECCcEEEEEeecCCCch----hhHHHHhhhhcc
Q psy16304 197 VPILVLGLDNAGKSSIIKRILGEP-------IISLVPTVGFNRARVEYGNKYEVFLYDLGGSED----FRTIWKQYLGTV 265 (537)
Q Consensus 197 ~~vgLVG~NGAGKSTLL~~L~G~~-------~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~----~r~~~~~~i~~v 265 (537)
..|+|||.+|||||||++.|++.. +.+..|+.| .+.++++..+.+||++|+.. .+.+...++..
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g----~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~- 233 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLG----MVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRH- 233 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEE----EEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHH-
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEE----EEEeCCCceEEEecCCCCcccccccchhHHHHHHH-
Confidence 469999999999999999999754 344566777 78887658899999998643 11122222221
Q ss_pred ccCCCCCCCccceeeEEee-cC
Q psy16304 266 SQTPLGRPDSRTCQVYLIM-CG 286 (537)
Q Consensus 266 ~Q~~~l~~~~~~~il~v~D-s~ 286 (537)
...++.+++++| ++
T Consensus 234 -------i~~~d~ll~VvD~s~ 248 (342)
T 1lnz_A 234 -------IERTRVIVHVIDMSG 248 (342)
T ss_dssp -------HHHCCEEEEEEESSC
T ss_pred -------HHhccEEEEEEECCc
Confidence 012788999999 44
No 279
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=97.97 E-value=7.5e-06 Score=85.35 Aligned_cols=75 Identities=20% Similarity=0.326 Sum_probs=53.7
Q ss_pred CeEEEEeCCCCcHHHHHHHHhCCC-------CccccCceeeeeEEEEECCcEEEEEeecCCCchhhH----HHHhhhhcc
Q psy16304 197 VPILVLGLDNAGKSSIIKRILGEP-------IISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRT----IWKQYLGTV 265 (537)
Q Consensus 197 ~~vgLVG~NGAGKSTLL~~L~G~~-------~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~----~~~~~i~~v 265 (537)
..|||||.++||||||||.|+|.. |++..|..| .+.+.+ ..+.++|++|..+... ...+.+..
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g----~~~~~~-~~i~l~D~pGl~~~a~~~~~~g~~~l~~- 146 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPG----VIRYKG-AKIQMLDLPGIIDGAKDGRGRGKQVIAV- 146 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEE----EEEETT-EEEEEEECGGGCCC-----CHHHHHHHH-
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeE----EEEeCC-cEEEEEeCCCccCCchhhhHHHHHHHHH-
Confidence 479999999999999999999854 334456666 788886 9999999999753211 11122211
Q ss_pred ccCCCCCCCccceeeEEee
Q psy16304 266 SQTPLGRPDSRTCQVYLIM 284 (537)
Q Consensus 266 ~Q~~~l~~~~~~~il~v~D 284 (537)
...++.+++++|
T Consensus 147 -------i~~ad~il~vvD 158 (376)
T 4a9a_A 147 -------ARTCNLLFIILD 158 (376)
T ss_dssp -------HHHCSEEEEEEE
T ss_pred -------HHhcCccccccc
Confidence 123889999999
No 280
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.96 E-value=1.7e-06 Score=85.89 Aligned_cols=39 Identities=23% Similarity=0.183 Sum_probs=34.2
Q ss_pred CCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCc-eeeeeEEEEECC
Q psy16304 193 DFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPT-VGFNRARVEYGN 239 (537)
Q Consensus 193 ~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt-~G~t~~~i~i~g 239 (537)
+.+|+.++|+||||||||||+++|+|. +.|+ .| .|.+.+
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~----~~~~~~G----~I~~~g 61 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDY----INQTKSY----HIITIE 61 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHH----HHHHCCC----EEEEEE
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHh----CCCCCCC----EEEEcC
Confidence 568999999999999999999999999 8888 88 665543
No 281
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=97.96 E-value=2.5e-05 Score=73.77 Aligned_cols=108 Identities=25% Similarity=0.367 Sum_probs=79.4
Q ss_pred CccEEEeccCccCccchhhhhcCCC-ceeeeccccccc--ceeccCC-----------ceEEEEEecCchhhHHHHHHHH
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFNR--ARVEYGN-----------KYEVFLYDLGGSEDFRTIWKQY 375 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la~--all~~~e-----------~p~lllLDT~Gl~~~~~l~~~~ 375 (537)
...+.++|..++||+++++.|.++. .....+|.+... ..+..++ ...+.+|||+|.+.+...|..+
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~ 104 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAF 104 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHHHH
Confidence 3567899999999999999999887 334444444321 1222121 1578999999999999999999
Q ss_pred HhcCCEEEEEEeCCCcchhhhhhhhhhc-------CCcEEEEeccc-chh
Q psy16304 376 LGTVSQTLLVSHSLSGRPDDRCQVYLMS-------CNCQVYLISAK-NLS 417 (537)
Q Consensus 376 ~~~~~~vIlVvdshd~~~~~~~~i~ll~-------~G~ii~~g~nk-dl~ 417 (537)
++..+++++|+|..+..+++.+..|+.. .+.++....|| |+.
T Consensus 105 ~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~ 154 (217)
T 2f7s_A 105 FRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLP 154 (217)
T ss_dssp HTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCG
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccc
Confidence 9999999999999998887766644322 45667777777 764
No 282
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.96 E-value=6.2e-06 Score=76.63 Aligned_cols=37 Identities=27% Similarity=0.444 Sum_probs=31.4
Q ss_pred CCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECC
Q psy16304 193 DFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGN 239 (537)
Q Consensus 193 ~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g 239 (537)
+.+|+.++|+|+||||||||+++|+|. ++.| .+.+++
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~------~~~g----~i~i~~ 42 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANL------PGVP----KVHFHS 42 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTC------SSSC----EEEECT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhc------cCCC----eEEEcc
Confidence 457999999999999999999999996 5567 666664
No 283
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.95 E-value=1.4e-05 Score=74.10 Aligned_cols=108 Identities=23% Similarity=0.349 Sum_probs=80.2
Q ss_pred CccEEEeccCccCccchhhhhcCCC-ceeeecccccccc--eeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEE
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFNRA--RVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLV 385 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la~a--ll~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlV 385 (537)
...+.++|..++||+++++.|.++. .....++.+.... .+..++ ...+.+|||+|.+.+..++..+++..+++++|
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 102 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILM 102 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEE
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEEE
Confidence 4568899999999999999999887 3344444443322 222121 27899999999999999999999999999999
Q ss_pred EeCCCcchhhhhhhhhhc------CCcEEEEeccc-chh
Q psy16304 386 SHSLSGRPDDRCQVYLMS------CNCQVYLISAK-NLS 417 (537)
Q Consensus 386 vdshd~~~~~~~~i~ll~------~G~ii~~g~nk-dl~ 417 (537)
+|..+..+++.+..|+.. .+.++...+|| |+.
T Consensus 103 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 141 (191)
T 3dz8_A 103 YDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDME 141 (191)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred EECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 999998887766633321 46677777777 763
No 284
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.94 E-value=2.1e-05 Score=70.47 Aligned_cols=108 Identities=21% Similarity=0.329 Sum_probs=78.3
Q ss_pred ccEEEeccCccCccchhhhhcCCC-ceeeeccccccc--ceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304 311 VPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFNR--ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVS 386 (537)
Q Consensus 311 ~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la~--all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVv 386 (537)
..+.++|..++||+++++.|.++. .....++.+... ..+..++ ...+.+|||+|.+.+...+..+++..+++++|+
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~ 83 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVY 83 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEEEE
Confidence 357799999999999999999887 333444544322 2222232 257899999999888888999999999999999
Q ss_pred eCCCcchhhhhhhhhh------cCCcEEEEeccc-chhh
Q psy16304 387 HSLSGRPDDRCQVYLM------SCNCQVYLISAK-NLSN 418 (537)
Q Consensus 387 dshd~~~~~~~~i~ll------~~G~ii~~g~nk-dl~~ 418 (537)
|..+..+++....|+. ..+.++....|| |+..
T Consensus 84 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 122 (170)
T 1ek0_A 84 DVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQ 122 (170)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred ecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccc
Confidence 9999877766653321 246677777777 7743
No 285
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.93 E-value=1.5e-05 Score=85.18 Aligned_cols=79 Identities=20% Similarity=0.389 Sum_probs=55.1
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeE----EEEECCcEEEEEeecCC----------CchhhHHHH-
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA----RVEYGNKYEVFLYDLGG----------SEDFRTIWK- 259 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~----~i~i~g~~~i~~~D~~G----------~~~~r~~~~- 259 (537)
...+++++|.+|+|||||++.|.|.......+..|+|++ .+.+++ ..+.+||++| ++.+.....
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~-~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~ 272 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ-QEFVIVDTAGMRKKGKVYETTEKYSVLRAL 272 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETT-EEEEETTGGGTTTBTTBCCCCSHHHHHHHH
T ss_pred ccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECC-ceEEEEECCCCCcCcccchHHHHHHHHHHH
Confidence 467899999999999999999999865445566665543 566665 8999999999 455543322
Q ss_pred hhhhccccCCCCCCCccceeeEEeec
Q psy16304 260 QYLGTVSQTPLGRPDSRTCQVYLIMC 285 (537)
Q Consensus 260 ~~i~~v~Q~~~l~~~~~~~il~v~Ds 285 (537)
.++.. ++++++++|+
T Consensus 273 ~~~~~-----------ad~~llviD~ 287 (456)
T 4dcu_A 273 KAIDR-----------SEVVAVVLDG 287 (456)
T ss_dssp HHHHH-----------CSEEEEEEET
T ss_pred HHHhh-----------CCEEEEEEeC
Confidence 23444 7889999993
No 286
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=97.93 E-value=3.5e-05 Score=71.63 Aligned_cols=108 Identities=21% Similarity=0.393 Sum_probs=75.8
Q ss_pred CccEEEeccCccCccchhhhhcCCCc-eeeecccccc--cceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEE
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN--RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLV 385 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~r-qrvs~ti~la--~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlV 385 (537)
...+.++|..++||+++++.|.++.. ....++.+.. ...+..++ ...+.+|||+|.+.+..+|..+++..+++++|
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV 105 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILV 105 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEE
Confidence 35678999999999999999998873 3334444422 22232232 25789999999999999999999999999999
Q ss_pred EeCCCcchhhhhhhhh--h----cCCcEEEEeccc-chh
Q psy16304 386 SHSLSGRPDDRCQVYL--M----SCNCQVYLISAK-NLS 417 (537)
Q Consensus 386 vdshd~~~~~~~~i~l--l----~~G~ii~~g~nk-dl~ 417 (537)
+|..+..+++.+..|+ + ..+.++....|| |+.
T Consensus 106 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~ 144 (192)
T 2il1_A 106 YDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE 144 (192)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred EECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 9999988877665332 1 236677777777 763
No 287
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.89 E-value=2.9e-06 Score=80.68 Aligned_cols=38 Identities=16% Similarity=0.172 Sum_probs=31.8
Q ss_pred CCCCeEEEEeCCCCcHHHHHHHHhCCCCccccC---ceeeeeEEEEECC
Q psy16304 194 FRSVPILVLGLDNAGKSSIIKRILGEPIISLVP---TVGFNRARVEYGN 239 (537)
Q Consensus 194 ~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~P---t~G~t~~~i~i~g 239 (537)
.+|++++|+|+||||||||+++|+|. +.| +.| .+..++
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~----~~~~g~~~g----~v~~d~ 60 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAA----LSAQGLPAE----VVPMDG 60 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHH----HHHTTCCEE----EEESGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH----HhhcCCceE----EEecCC
Confidence 47999999999999999999999998 775 356 666554
No 288
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=97.89 E-value=3.5e-05 Score=69.73 Aligned_cols=108 Identities=20% Similarity=0.352 Sum_probs=79.0
Q ss_pred CccEEEeccCccCccchhhhhcCCC-ceeeecccccc--cceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEE
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFN--RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLV 385 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la--~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlV 385 (537)
...+.++|..++||+++++.|.++. .....++.+.. ...+..++ ...+.+|||+|.+.+...+..+++..+++++|
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 94 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 94 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEEEE
Confidence 3567899999999999999999887 33344444432 22232232 25788999999988888999999999999999
Q ss_pred EeCCCcchhhhhhhhhh------cCCcEEEEeccc-chh
Q psy16304 386 SHSLSGRPDDRCQVYLM------SCNCQVYLISAK-NLS 417 (537)
Q Consensus 386 vdshd~~~~~~~~i~ll------~~G~ii~~g~nk-dl~ 417 (537)
+|..+..+++.+..|+. ..+.++....|| |+.
T Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 133 (179)
T 1z0f_A 95 YDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLE 133 (179)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred EeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 99999887776654331 145667777777 763
No 289
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=97.88 E-value=1.7e-05 Score=73.99 Aligned_cols=108 Identities=24% Similarity=0.336 Sum_probs=56.8
Q ss_pred CccEEEeccCccCccchhhhhcCC--C-ceeeecccc--cccceeccCC---ceEEEEEecCchhhHHHHHHHHHhcCCE
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGE--P-IISLVPTVG--FNRARVEYGN---KYEVFLYDLGGSEDFRTIWKQYLGTVSQ 381 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG--~-rqrvs~ti~--la~all~~~e---~p~lllLDT~Gl~~~~~l~~~~~~~~~~ 381 (537)
...+.++|..++||+++++.|.++ . .....+|.+ +....+..++ ...+.+|||+|.+.+..+|..+++..++
T Consensus 20 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 99 (208)
T 2yc2_C 20 RCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYY 99 (208)
T ss_dssp EEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCCCE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhCcE
Confidence 456789999999999999999998 4 234445554 2333333342 2579999999999999999999999999
Q ss_pred EEEEEeCCCcchhhhhhhhhhc---------CCcEEEEeccc-chh
Q psy16304 382 TLLVSHSLSGRPDDRCQVYLMS---------CNCQVYLISAK-NLS 417 (537)
Q Consensus 382 vIlVvdshd~~~~~~~~i~ll~---------~G~ii~~g~nk-dl~ 417 (537)
+++|+|..+..+++.+..|+.. .+.++...+|| |+.
T Consensus 100 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 145 (208)
T 2yc2_C 100 AILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLP 145 (208)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC---
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccc
Confidence 9999999998877766533321 36677777777 774
No 290
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=97.88 E-value=2.5e-05 Score=71.60 Aligned_cols=108 Identities=21% Similarity=0.303 Sum_probs=78.4
Q ss_pred CccEEEeccCccCccchhhhhcCCCc-eeeeccccccc---ceeccCC----------ceEEEEEecCchhhHHHHHHHH
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR---ARVEYGN----------KYEVFLYDLGGSEDFRTIWKQY 375 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~r-qrvs~ti~la~---all~~~e----------~p~lllLDT~Gl~~~~~l~~~~ 375 (537)
...+.++|..++||+++++.|.++.. ....++.+... ..+..++ ...+.+|||+|.+.+...+..+
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~ 90 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTAF 90 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHHHT
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHHHHH
Confidence 35678999999999999999998773 33344444322 1222221 1588999999999999999999
Q ss_pred HhcCCEEEEEEeCCCcchhhhhhhhhhc-------CCcEEEEeccc-chh
Q psy16304 376 LGTVSQTLLVSHSLSGRPDDRCQVYLMS-------CNCQVYLISAK-NLS 417 (537)
Q Consensus 376 ~~~~~~vIlVvdshd~~~~~~~~i~ll~-------~G~ii~~g~nk-dl~ 417 (537)
++..+++++|+|..+..+++.+..|+.. .+.++....|| |+.
T Consensus 91 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 140 (195)
T 3bc1_A 91 FRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLE 140 (195)
T ss_dssp TTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCG
T ss_pred HcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 9999999999999988877765533221 45666777777 763
No 291
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=97.87 E-value=3.3e-05 Score=77.71 Aligned_cols=26 Identities=35% Similarity=0.629 Sum_probs=23.5
Q ss_pred CCeEEEEeCCCCcHHHHHHHHhCCCC
Q psy16304 196 SVPILVLGLDNAGKSSIIKRILGEPI 221 (537)
Q Consensus 196 G~~vgLVG~NGAGKSTLL~~L~G~~~ 221 (537)
-..|+|+|.+|||||||++.|+|..+
T Consensus 24 ~~~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 24 LPQIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred CCeEEEEcCCCCCHHHHHHHHHCCCc
Confidence 35799999999999999999999865
No 292
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=97.87 E-value=2.9e-05 Score=70.12 Aligned_cols=107 Identities=15% Similarity=0.132 Sum_probs=69.3
Q ss_pred ccEEEeccCccCccchhhhhcCCCceeeecccccc--cceeccCC-ceEEEEEecCchhh--HHHHHHHHHhcCCEEEEE
Q psy16304 311 VPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN--RARVEYGN-KYEVFLYDLGGSED--FRTIWKQYLGTVSQTLLV 385 (537)
Q Consensus 311 ~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la--~all~~~e-~p~lllLDT~Gl~~--~~~l~~~~~~~~~~vIlV 385 (537)
..+.++|.+++||+++++.|.++......++.+.. ...+..++ ...+.+|||+|.+. ...++..+++..+++++|
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v 84 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIV 84 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEEEEE
T ss_pred EEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEEEEE
Confidence 45789999999999999999998865555555533 22233333 24788999999966 445567778888999999
Q ss_pred EeCCCcchhhhhhhhh---hc----CCcEEEEeccc-chh
Q psy16304 386 SHSLSGRPDDRCQVYL---MS----CNCQVYLISAK-NLS 417 (537)
Q Consensus 386 vdshd~~~~~~~~i~l---l~----~G~ii~~g~nk-dl~ 417 (537)
+|..+..+++.+..|+ .. .+.++...+|| |+.
T Consensus 85 ~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~ 124 (175)
T 2nzj_A 85 YSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLA 124 (175)
T ss_dssp EETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCT
T ss_pred EECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhc
Confidence 9999988877665332 22 26677777777 763
No 293
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=97.87 E-value=3.7e-05 Score=70.94 Aligned_cols=108 Identities=20% Similarity=0.344 Sum_probs=78.2
Q ss_pred CccEEEeccCccCccchhhhhcCCCc-eeeecccccc--cceeccCC-ceEEEEEecCchhhHH-HHHHHHHhcCCEEEE
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN--RARVEYGN-KYEVFLYDLGGSEDFR-TIWKQYLGTVSQTLL 384 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~r-qrvs~ti~la--~all~~~e-~p~lllLDT~Gl~~~~-~l~~~~~~~~~~vIl 384 (537)
...+.++|..++||+++++.|.++.. ....++.+.. ...+..++ ...+.+|||+|.+.+. .++..+++..+++++
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iil 99 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVF 99 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEEEE
Confidence 45678999999999999999998873 3334444432 22232232 2578999999998887 788999999999999
Q ss_pred EEeCCCcchhhhhhhhhh-------cCCcEEEEeccc-chh
Q psy16304 385 VSHSLSGRPDDRCQVYLM-------SCNCQVYLISAK-NLS 417 (537)
Q Consensus 385 Vvdshd~~~~~~~~i~ll-------~~G~ii~~g~nk-dl~ 417 (537)
|+|..+..+++.+..|+. ..+.++....|| |+.
T Consensus 100 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 140 (189)
T 1z06_A 100 VYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR 140 (189)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCG
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 999999877766553321 245666777777 763
No 294
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=97.86 E-value=4.6e-05 Score=75.58 Aligned_cols=55 Identities=20% Similarity=0.299 Sum_probs=37.8
Q ss_pred CeEEEEeCCCCcHHHHHHHHhCCCC--ccc-------cCceeeeeEEEEEC--C-cEEEEEeecCCC
Q psy16304 197 VPILVLGLDNAGKSSIIKRILGEPI--ISL-------VPTVGFNRARVEYG--N-KYEVFLYDLGGS 251 (537)
Q Consensus 197 ~~vgLVG~NGAGKSTLL~~L~G~~~--~~~-------~Pt~G~t~~~i~i~--g-~~~i~~~D~~G~ 251 (537)
.+|+|+|.+|+|||||+|.|.+... ..+ .+|.+.+.....+. | ...+.+||++|+
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~ 75 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGF 75 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCc
Confidence 5699999999999999999988654 222 45555444444443 2 258999999997
No 295
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.86 E-value=2.4e-05 Score=87.55 Aligned_cols=81 Identities=16% Similarity=0.193 Sum_probs=57.4
Q ss_pred cCCCCCeEEEEeCCCCcHHHHHHHHhCCCCc-----cc---------cC---cee--eeeE--EEEECCcEEEEEeecCC
Q psy16304 192 FDFRSVPILVLGLDNAGKSSIIKRILGEPII-----SL---------VP---TVG--FNRA--RVEYGNKYEVFLYDLGG 250 (537)
Q Consensus 192 ~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~-----~~---------~P---t~G--~t~~--~i~i~g~~~i~~~D~~G 250 (537)
...++.+++|+|++|+|||||++.|++.... .+ .+ ..| +..+ .+... +..+.+||++|
T Consensus 5 ~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~~~nliDTpG 83 (665)
T 2dy1_A 5 GGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GHRVFLLDAPG 83 (665)
T ss_dssp -CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TEEEEEEECCC
T ss_pred ccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeC-CEEEEEEeCCC
Confidence 3557899999999999999999999843110 00 00 112 1122 33344 48999999999
Q ss_pred CchhhHHHHhhhhccccCCCCCCCccceeeEEee
Q psy16304 251 SEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIM 284 (537)
Q Consensus 251 ~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~D 284 (537)
+.++...+...+.. ++..++++|
T Consensus 84 ~~~f~~~~~~~l~~-----------ad~~ilVvD 106 (665)
T 2dy1_A 84 YGDFVGEIRGALEA-----------ADAALVAVS 106 (665)
T ss_dssp SGGGHHHHHHHHHH-----------CSEEEEEEE
T ss_pred ccchHHHHHHHHhh-----------cCcEEEEEc
Confidence 99888777777776 889999999
No 296
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=97.86 E-value=3.5e-05 Score=69.00 Aligned_cols=107 Identities=20% Similarity=0.280 Sum_probs=77.1
Q ss_pred ccEEEeccCccCccchhhhhcCCCc-eeeeccccccc--ceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304 311 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR--ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVS 386 (537)
Q Consensus 311 ~~L~llGl~~~gKs~li~~LSgG~r-qrvs~ti~la~--all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVv 386 (537)
..+.++|..++||+++++.|.++.. ....++.+... ..+..++ ...+.+|||+|.+.+...+..+++..+++++|+
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVY 86 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEE
Confidence 4577999999999999999998873 22334444322 2222232 268899999999888888999999999999999
Q ss_pred eCCCcchhhhhhhhhh------cCCcEEEEeccc-chh
Q psy16304 387 HSLSGRPDDRCQVYLM------SCNCQVYLISAK-NLS 417 (537)
Q Consensus 387 dshd~~~~~~~~i~ll------~~G~ii~~g~nk-dl~ 417 (537)
|..+..+++....|+. ..+.++...+|| |+.
T Consensus 87 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~ 124 (170)
T 1r2q_A 87 DITNEESFARAKNWVKELQRQASPNIVIALSGNKADLA 124 (170)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCc
Confidence 9998877766553322 135667777777 763
No 297
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=97.85 E-value=4e-05 Score=71.45 Aligned_cols=107 Identities=23% Similarity=0.372 Sum_probs=78.8
Q ss_pred ccEEEeccCccCccchhhhhcCCCc-eeeeccccccc--ceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304 311 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR--ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVS 386 (537)
Q Consensus 311 ~~L~llGl~~~gKs~li~~LSgG~r-qrvs~ti~la~--all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVv 386 (537)
..+.++|..++||+++++.|.++.. ....++.+... ..+..++ ...+.+|||+|.+.+..+|..+++..+++++|+
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 88 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFILMY 88 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEEEEE
Confidence 4578999999999999999998873 33444545332 2222232 268899999999999999999999999999999
Q ss_pred eCCCcchhhhhhhhhh---c---CCcEEEEeccc-chh
Q psy16304 387 HSLSGRPDDRCQVYLM---S---CNCQVYLISAK-NLS 417 (537)
Q Consensus 387 dshd~~~~~~~~i~ll---~---~G~ii~~g~nk-dl~ 417 (537)
|..+..+++.+..|+. . .+.++....|| |+.
T Consensus 89 d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 126 (203)
T 1zbd_A 89 DITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDME 126 (203)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCT
T ss_pred ECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccC
Confidence 9999887766553322 1 46677777777 774
No 298
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.85 E-value=2.5e-05 Score=71.00 Aligned_cols=108 Identities=19% Similarity=0.396 Sum_probs=72.2
Q ss_pred CccEEEeccCccCccchhhhhcCCCce--eeeccccccc--ceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEE
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEPII--SLVPTVGFNR--ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLL 384 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~rq--rvs~ti~la~--all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIl 384 (537)
...+.++|..++||+++++.|.++... ...++.+... ..+..++ ...+.+|||+|.+.+...|..+++..+++++
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 89 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLL 89 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEEEE
Confidence 456789999999999999999988742 3444444332 2222233 2578899999999888889989999999999
Q ss_pred EEeCCCcchhhhhhhhhh------cCCcEEEEeccc-chh
Q psy16304 385 VSHSLSGRPDDRCQVYLM------SCNCQVYLISAK-NLS 417 (537)
Q Consensus 385 Vvdshd~~~~~~~~i~ll------~~G~ii~~g~nk-dl~ 417 (537)
|+|..+..+++.+..|+. ..+.++....|| |+.
T Consensus 90 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 129 (180)
T 2g6b_A 90 LYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSA 129 (180)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccC
Confidence 999999887766553321 156677777777 763
No 299
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=97.85 E-value=2.2e-05 Score=72.54 Aligned_cols=108 Identities=23% Similarity=0.385 Sum_probs=78.7
Q ss_pred CccEEEeccCccCccchhhhhcCCC-ceeeeccccc--ccceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEE
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGF--NRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLV 385 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~l--a~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlV 385 (537)
...+.++|..++||+++++.|.++. .....++.+. ....+..++ ...+.+|||+|.+.+..++..+++..+++++|
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 95 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVV 95 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEE
Confidence 3567899999999999999999877 3333344442 222333233 25788999999988888899999999999999
Q ss_pred EeCCCcchhhhhhhhhh------cCCcEEEEeccc-chh
Q psy16304 386 SHSLSGRPDDRCQVYLM------SCNCQVYLISAK-NLS 417 (537)
Q Consensus 386 vdshd~~~~~~~~i~ll------~~G~ii~~g~nk-dl~ 417 (537)
+|..+..+++.+..|+. ..+.++....|| |+.
T Consensus 96 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~ 134 (196)
T 3tkl_A 96 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 134 (196)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred EECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 99999888776663331 235667777777 763
No 300
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.84 E-value=4.9e-05 Score=78.48 Aligned_cols=58 Identities=26% Similarity=0.348 Sum_probs=41.7
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCCc--cc-cCceeeeeEEEEECCcEEEEEeecCCCch
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPII--SL-VPTVGFNRARVEYGNKYEVFLYDLGGSED 253 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~--~~-~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~ 253 (537)
...+++++|++|||||||++.|+|..+. .. ..|.+.....+...+ ..+.+||++|...
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~Dt~G~~~ 226 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY-FRYQIIDTPGLLD 226 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT-EEEEEEECTTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC-ceEEEEeCCCccc
Confidence 4678999999999999999999997531 11 123333334555554 8899999999853
No 301
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=97.84 E-value=3.3e-05 Score=70.71 Aligned_cols=108 Identities=23% Similarity=0.359 Sum_probs=78.6
Q ss_pred CccEEEeccCccCccchhhhhcCCCc-eeeeccccc--ccceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEE
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGF--NRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLV 385 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~r-qrvs~ti~l--a~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlV 385 (537)
...+.++|..++||+++++.|.++.. ....++.+. ....+..++ ...+.+|||+|.+.+...|..+++..+++++|
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 89 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLV 89 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEE
Confidence 35678999999999999999998773 223333332 222333232 24788999999998899999999999999999
Q ss_pred EeCCCcchhhhhhhhhh------cCCcEEEEeccc-chh
Q psy16304 386 SHSLSGRPDDRCQVYLM------SCNCQVYLISAK-NLS 417 (537)
Q Consensus 386 vdshd~~~~~~~~i~ll------~~G~ii~~g~nk-dl~ 417 (537)
+|..+..+++.+..|+. ..+.++....|| |+.
T Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 128 (186)
T 2bme_A 90 YDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLD 128 (186)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred EECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 99999888776653321 246677777777 774
No 302
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=97.84 E-value=2e-05 Score=73.22 Aligned_cols=108 Identities=22% Similarity=0.324 Sum_probs=80.6
Q ss_pred CccEEEeccCccCccchhhhhcCCC-ceeeecccccccc--eeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEE
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFNRA--RVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLV 385 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la~a--ll~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlV 385 (537)
...+.++|..++||+++++.|.++. .....++.+.... .+..++ ...+.+|||+|.+.+...+..+++..+++++|
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV 102 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIV 102 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEEEE
Confidence 4567899999999999999999887 3355566664332 222221 36899999999988888899999999999999
Q ss_pred EeCCCcchhhhhhhhhhc------CCcEEEEeccc-chh
Q psy16304 386 SHSLSGRPDDRCQVYLMS------CNCQVYLISAK-NLS 417 (537)
Q Consensus 386 vdshd~~~~~~~~i~ll~------~G~ii~~g~nk-dl~ 417 (537)
+|..+..+++.+..|+.. .+.++....|| |+.
T Consensus 103 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~ 141 (192)
T 2fg5_A 103 YDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLS 141 (192)
T ss_dssp EETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred EeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 999998877766533321 36677777777 763
No 303
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.84 E-value=3.9e-06 Score=79.34 Aligned_cols=25 Identities=32% Similarity=0.662 Sum_probs=22.3
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGE 219 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~ 219 (537)
+|..++|+||||||||||+++|.|.
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 6889999999999999999999996
No 304
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=97.84 E-value=1.7e-05 Score=82.56 Aligned_cols=72 Identities=17% Similarity=0.246 Sum_probs=50.9
Q ss_pred eEEEEeCCCCcHHHHHHHHhCCC-------CccccCceeeeeEEEEECC--------------------cEEEEEeecCC
Q psy16304 198 PILVLGLDNAGKSSIIKRILGEP-------IISLVPTVGFNRARVEYGN--------------------KYEVFLYDLGG 250 (537)
Q Consensus 198 ~vgLVG~NGAGKSTLL~~L~G~~-------~~~~~Pt~G~t~~~i~i~g--------------------~~~i~~~D~~G 250 (537)
+++|||++|||||||++.|++.. +++..|+.| .+.+.+ +..+.+||++|
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g----~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpG 78 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVG----VVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAG 78 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEE----EEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCcccCCCCceecccee----eEecChHHHHHHHHHhcccccccccCCceEEEEECCC
Confidence 58999999999999999999742 235678888 444321 25799999999
Q ss_pred Cchhh----HH---HHhhhhccccCCCCCCCccceeeEEee
Q psy16304 251 SEDFR----TI---WKQYLGTVSQTPLGRPDSRTCQVYLIM 284 (537)
Q Consensus 251 ~~~~r----~~---~~~~i~~v~Q~~~l~~~~~~~il~v~D 284 (537)
+.+.. .+ +...+.. ++++++|+|
T Consensus 79 l~~~a~~~~~lg~~fl~~ir~-----------ad~ii~VvD 108 (368)
T 2dby_A 79 LVKGAHKGEGLGNQFLAHIRE-----------VAAIAHVLR 108 (368)
T ss_dssp CCCCCCSSSCTTHHHHHHHHT-----------CSEEEEEEE
T ss_pred ccccccccchHHHHHHHHHHh-----------CCEEEEEEE
Confidence 86432 11 1112232 889999999
No 305
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=97.83 E-value=4.9e-05 Score=67.73 Aligned_cols=107 Identities=18% Similarity=0.236 Sum_probs=73.9
Q ss_pred ccEEEeccCccCccchhhhhcCCCc-eeeeccccccc-ceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEe
Q psy16304 311 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSH 387 (537)
Q Consensus 311 ~~L~llGl~~~gKs~li~~LSgG~r-qrvs~ti~la~-all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvd 387 (537)
..+.++|..++||+++++.|.++.. ....++.+... ..+..++ ...+.+|||+|.+....+|..+++..+++++|+|
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 84 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFS 84 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEEEE
Confidence 4577999999999999999998872 23333333221 1122232 2578899999998888899999999999999999
Q ss_pred CCCcchhhhhhhhhh-------cCCcEEEEeccc-chh
Q psy16304 388 SLSGRPDDRCQVYLM-------SCNCQVYLISAK-NLS 417 (537)
Q Consensus 388 shd~~~~~~~~i~ll-------~~G~ii~~g~nk-dl~ 417 (537)
..+..+++....|+. ..+.++....|| |+.
T Consensus 85 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 122 (168)
T 1u8z_A 85 ITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122 (168)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGG
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECcccc
Confidence 998887766553221 136677777777 764
No 306
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.83 E-value=3.3e-05 Score=72.89 Aligned_cols=108 Identities=21% Similarity=0.326 Sum_probs=78.7
Q ss_pred CccEEEeccCccCccchhhhhcCCCc-eeeecccccc--cceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEE
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN--RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLV 385 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~r-qrvs~ti~la--~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlV 385 (537)
...+.++|..++||+++++.|.++.. ....+|++.. ...+..++ ...+.+|||+|.+.+..++..+++..+++++|
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 105 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILT 105 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEE
Confidence 35678999999999999999998773 2333444422 22333333 25788999999998888999999999999999
Q ss_pred EeCCCcchhhhhhhhhh------cCCcEEEEeccc-chh
Q psy16304 386 SHSLSGRPDDRCQVYLM------SCNCQVYLISAK-NLS 417 (537)
Q Consensus 386 vdshd~~~~~~~~i~ll------~~G~ii~~g~nk-dl~ 417 (537)
+|..+..+++.+..|+. ..+.++...+|| |+.
T Consensus 106 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 144 (201)
T 2ew1_A 106 YDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLA 144 (201)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 99999888776653332 245667777777 764
No 307
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=97.83 E-value=1.2e-05 Score=74.14 Aligned_cols=108 Identities=19% Similarity=0.193 Sum_probs=75.0
Q ss_pred CccEEEeccCccCccchhhhhcCCCcee-----------eeccccccccee---ccCC-ceEEEEEecCchhhHHHHHHH
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEPIIS-----------LVPTVGFNRARV---EYGN-KYEVFLYDLGGSEDFRTIWKQ 374 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~rqr-----------vs~ti~la~all---~~~e-~p~lllLDT~Gl~~~~~l~~~ 374 (537)
...+.++|.+++||+++++.+.+..... ..+|++...... ..++ ...+.+|||+|++.+..+|..
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 93 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRKL 93 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHHHHH
Confidence 4567899999999999998777655332 223444332211 1122 267899999999988899999
Q ss_pred HHhcCCEEEEEEeCCCc------chhhhhhhhhhc-----CCcEEEEeccc-chh
Q psy16304 375 YLGTVSQTLLVSHSLSG------RPDDRCQVYLMS-----CNCQVYLISAK-NLS 417 (537)
Q Consensus 375 ~~~~~~~vIlVvdshd~------~~~~~~~i~ll~-----~G~ii~~g~nk-dl~ 417 (537)
+++..+++++|+|..+. ..+..+..|+.+ .+.++...+|| |+.
T Consensus 94 ~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~ 148 (198)
T 3t1o_A 94 ILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLP 148 (198)
T ss_dssp HTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTST
T ss_pred HHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcc
Confidence 99999999999998843 344444444433 46677777777 763
No 308
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.82 E-value=4.8e-05 Score=67.71 Aligned_cols=107 Identities=20% Similarity=0.294 Sum_probs=75.7
Q ss_pred ccEEEeccCccCccchhhhhcCCCc-eeeeccccc-ccceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEe
Q psy16304 311 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGF-NRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSH 387 (537)
Q Consensus 311 ~~L~llGl~~~gKs~li~~LSgG~r-qrvs~ti~l-a~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvd 387 (537)
..+.++|..++||+++++.|.++.. ....++.+. ....+..++ ...+.+|||+|.+....++..+++..+++++|+|
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d 83 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYS 83 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEe
Confidence 4577999999999999999998873 233333331 122222233 2458899999998888899999999999999999
Q ss_pred CCCcchhhhhhhh---hh----cCCcEEEEeccc-chh
Q psy16304 388 SLSGRPDDRCQVY---LM----SCNCQVYLISAK-NLS 417 (537)
Q Consensus 388 shd~~~~~~~~i~---ll----~~G~ii~~g~nk-dl~ 417 (537)
..+..+++....+ +. ..+.++....|| |+.
T Consensus 84 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 121 (167)
T 1kao_A 84 LVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLE 121 (167)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGG
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCccc
Confidence 9998776655422 11 136677777777 763
No 309
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=97.82 E-value=3.8e-05 Score=69.01 Aligned_cols=106 Identities=18% Similarity=0.203 Sum_probs=67.1
Q ss_pred cEEEeccCccCccchhhhhcCCCceee---ecccccccceeccCC-ceEEEEEecCchhhHHH-HHHHHHhcCCEEEEEE
Q psy16304 312 PILVLGLDNAGKSSIIKRILGEPIISL---VPTVGFNRARVEYGN-KYEVFLYDLGGSEDFRT-IWKQYLGTVSQTLLVS 386 (537)
Q Consensus 312 ~L~llGl~~~gKs~li~~LSgG~rqrv---s~ti~la~all~~~e-~p~lllLDT~Gl~~~~~-l~~~~~~~~~~vIlVv 386 (537)
.+.++|.+++||+++++.|.++..... ..+.......+..++ ...+.+|||+|.+.... ++..+++..+++++|+
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 83 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVF 83 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEEEE
Confidence 467999999999999999987763222 112222223332233 35788999999977665 6677888899999999
Q ss_pred eCCCcchhhhhhhhhhc-------CCcEEEEeccc-chh
Q psy16304 387 HSLSGRPDDRCQVYLMS-------CNCQVYLISAK-NLS 417 (537)
Q Consensus 387 dshd~~~~~~~~i~ll~-------~G~ii~~g~nk-dl~ 417 (537)
|..+..+++.+..|+.. .+.++...+|| |+.
T Consensus 84 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 122 (169)
T 3q85_A 84 SVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA 122 (169)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCG
T ss_pred ECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchh
Confidence 99998888776633322 26677777777 763
No 310
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=97.82 E-value=1.6e-05 Score=72.16 Aligned_cols=108 Identities=21% Similarity=0.290 Sum_probs=77.0
Q ss_pred CccEEEeccCccCccchhhhhcCCCc-eeeecccc--cccceeccCC--ceEEEEEecCchhhHHHHHHHHHhcCCEEEE
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG--FNRARVEYGN--KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLL 384 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~r-qrvs~ti~--la~all~~~e--~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIl 384 (537)
...+.++|.+++||+++++.|.++.. ....+|.+ +....+..++ ...+.+|||+|.+.+..+|..+++..+++++
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~ 85 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLL 85 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEEEE
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEEEE
Confidence 35678999999999999999998873 33444554 2223333232 2688999999998888889999999999999
Q ss_pred EEeCCCcchhhhhhhhh---hc-----CCcE-EEEeccc-chh
Q psy16304 385 VSHSLSGRPDDRCQVYL---MS-----CNCQ-VYLISAK-NLS 417 (537)
Q Consensus 385 Vvdshd~~~~~~~~i~l---l~-----~G~i-i~~g~nk-dl~ 417 (537)
|+|..+..+++.+..|+ .. .+.+ +...+|| |+.
T Consensus 86 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~ 128 (178)
T 2hxs_A 86 VYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLE 128 (178)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGG
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccc
Confidence 99999988776655322 11 1333 5566666 764
No 311
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.81 E-value=8.9e-06 Score=82.17 Aligned_cols=35 Identities=29% Similarity=0.299 Sum_probs=28.1
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEE
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEY 237 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i 237 (537)
.|++++|+|+||||||||+|+|.|. ..|+.| ++.+
T Consensus 168 ~geiv~l~G~sG~GKSTll~~l~g~----~~~~~G----~i~~ 202 (301)
T 1u0l_A 168 KGKISTMAGLSGVGKSSLLNAINPG----LKLRVS----EVSE 202 (301)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTT----CCCC----------
T ss_pred cCCeEEEECCCCCcHHHHHHHhccc----cccccc----ceec
Confidence 6899999999999999999999999 899999 7776
No 312
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=97.81 E-value=1.8e-05 Score=72.44 Aligned_cols=107 Identities=20% Similarity=0.400 Sum_probs=56.5
Q ss_pred ccEEEeccCccCccchhhhhcCCC-ceeeecccccc--cceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304 311 VPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFN--RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVS 386 (537)
Q Consensus 311 ~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la--~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVv 386 (537)
..+.++|..++||+++++.|.++. .....++.+.. ...+..++ ...+.+|||+|.+.+..+|..+++..+++++|+
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 88 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVY 88 (183)
T ss_dssp EEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEE
Confidence 467899999999999999999876 33344444422 22232232 257889999999888888888889999999999
Q ss_pred eCCCcchhhhhhhhhh------cCCcEEEEeccc-chh
Q psy16304 387 HSLSGRPDDRCQVYLM------SCNCQVYLISAK-NLS 417 (537)
Q Consensus 387 dshd~~~~~~~~i~ll------~~G~ii~~g~nk-dl~ 417 (537)
|..+..+++.+..|+. ..+.++...+|| |+.
T Consensus 89 d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 126 (183)
T 2fu5_C 89 DITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVN 126 (183)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CC
T ss_pred ECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCC
Confidence 9999887776653332 135677777777 763
No 313
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.80 E-value=6.6e-06 Score=83.37 Aligned_cols=32 Identities=22% Similarity=0.163 Sum_probs=30.1
Q ss_pred CCCCeEEEEeCCCCcHHHHHHHHhCCCCcccc--Ccee
Q psy16304 194 FRSVPILVLGLDNAGKSSIIKRILGEPIISLV--PTVG 229 (537)
Q Consensus 194 ~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~--Pt~G 229 (537)
.+|+++||+|+||||||||+++|.|. +. |+.|
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~----l~~~~~~G 111 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL----LSRWPEHR 111 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH----HTTSTTCC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH----HhhCCCCC
Confidence 58999999999999999999999998 77 8999
No 314
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.79 E-value=6.6e-06 Score=76.73 Aligned_cols=30 Identities=33% Similarity=0.667 Sum_probs=26.0
Q ss_pred CCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304 196 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG 229 (537)
Q Consensus 196 G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G 229 (537)
|.+++|+||||||||||+++|+|. +.+..|
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~----~~~~~~ 30 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAE----YPDSFG 30 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHH----CGGGEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh----CCccce
Confidence 467999999999999999999998 655555
No 315
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=97.78 E-value=3.4e-05 Score=72.00 Aligned_cols=108 Identities=20% Similarity=0.304 Sum_probs=74.1
Q ss_pred CccEEEeccCccCccchhhhhcCCC-ceeeeccccccc--ceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEE
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFNR--ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLV 385 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la~--all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlV 385 (537)
...+.++|..++||+++++.|.++. .....++.+... ..+..++ ...+.+|||+|.+.+...+..+++..+++++|
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv 107 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLL 107 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEEEE
T ss_pred CeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEEEEE
Confidence 4668899999999999999999887 444555555332 2233233 25788999999988888999999999999999
Q ss_pred EeCCCcchhhhhhhhhh------cCCcEEEEeccc-chh
Q psy16304 386 SHSLSGRPDDRCQVYLM------SCNCQVYLISAK-NLS 417 (537)
Q Consensus 386 vdshd~~~~~~~~i~ll------~~G~ii~~g~nk-dl~ 417 (537)
+|..+..+++.+..|+. ..+.++....|| |+.
T Consensus 108 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 146 (199)
T 2p5s_A 108 YDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIR 146 (199)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGH
T ss_pred EECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 99998887776653321 135666777777 764
No 316
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.78 E-value=6.7e-05 Score=67.23 Aligned_cols=107 Identities=21% Similarity=0.257 Sum_probs=75.9
Q ss_pred ccEEEeccCccCccchhhhhcCCCc-eeeecccccc-cceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEe
Q psy16304 311 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN-RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSH 387 (537)
Q Consensus 311 ~~L~llGl~~~gKs~li~~LSgG~r-qrvs~ti~la-~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvd 387 (537)
..+.++|..++||+++++.|.++.. ....++.+.. ...+..+. ...+.+|||+|.+.+..++..+++..+++++|+|
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d 83 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 83 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEEEE
Confidence 4577999999999999999998873 2333443322 22222222 2578899999998888889999999999999999
Q ss_pred CCCcchhhhhhhhh---hc-----CCcEEEEeccc-chh
Q psy16304 388 SLSGRPDDRCQVYL---MS-----CNCQVYLISAK-NLS 417 (537)
Q Consensus 388 shd~~~~~~~~i~l---l~-----~G~ii~~g~nk-dl~ 417 (537)
..+..+++....++ .+ .+.++....|| |+.
T Consensus 84 ~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~ 122 (172)
T 2erx_A 84 ITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122 (172)
T ss_dssp TTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGG
T ss_pred CcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccc
Confidence 99887776655222 21 25666777777 764
No 317
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.78 E-value=2.6e-05 Score=69.81 Aligned_cols=108 Identities=21% Similarity=0.353 Sum_probs=77.0
Q ss_pred CccEEEeccCccCccchhhhhcCCCc-eeeecccccc--cceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEE
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN--RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLV 385 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~r-qrvs~ti~la--~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlV 385 (537)
...+.++|..++||+++++.|.++.. ....++.+.. ...+..++ ...+.+|||+|.+....++..+++..+++++|
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 84 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV 84 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEE
Confidence 34577999999999999999998873 3334444422 22222232 25889999999988888888999999999999
Q ss_pred EeCCCcchhhhhhhhhhc-----CCcEEEEeccc-chh
Q psy16304 386 SHSLSGRPDDRCQVYLMS-----CNCQVYLISAK-NLS 417 (537)
Q Consensus 386 vdshd~~~~~~~~i~ll~-----~G~ii~~g~nk-dl~ 417 (537)
+|..+..+++....|+.. .+.++....|| |+.
T Consensus 85 ~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 122 (168)
T 1z2a_A 85 FSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLL 122 (168)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGG
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccC
Confidence 999988777665533221 35666666777 764
No 318
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.77 E-value=6.4e-06 Score=85.34 Aligned_cols=37 Identities=16% Similarity=0.273 Sum_probs=33.4
Q ss_pred cccccCCC--CCeEEEEeCCCCcHHHHHHHHhCCCCccccCce
Q psy16304 188 HLSLFDFR--SVPILVLGLDNAGKSSIIKRILGEPIISLVPTV 228 (537)
Q Consensus 188 ~~~l~~~~--G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~ 228 (537)
.+++.+.+ |++++|+|+||||||||+++|+|. +.|+.
T Consensus 160 ~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl----~~~~~ 198 (365)
T 1lw7_A 160 FIPKEARPFFAKTVAILGGESSGKSVLVNKLAAV----FNTTS 198 (365)
T ss_dssp GSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHH----TTCEE
T ss_pred hCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHH----hCCCc
Confidence 45566778 999999999999999999999999 88888
No 319
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=97.77 E-value=4.4e-05 Score=68.43 Aligned_cols=107 Identities=22% Similarity=0.343 Sum_probs=77.8
Q ss_pred ccEEEeccCccCccchhhhhcCCC-ceeeeccccccc--ceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304 311 VPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFNR--ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVS 386 (537)
Q Consensus 311 ~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la~--all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVv 386 (537)
..+.++|..++||+++++.|.++. .....++.+... ..+..++ ...+.+|||+|.+.....+..+++..+++++|+
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~ 86 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVY 86 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEE
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEEEEE
Confidence 467899999999999999999887 344445555332 2222222 267889999999888888899999999999999
Q ss_pred eCCCcchhhhhhhhhh------cCCcEEEEeccc-chh
Q psy16304 387 HSLSGRPDDRCQVYLM------SCNCQVYLISAK-NLS 417 (537)
Q Consensus 387 dshd~~~~~~~~i~ll------~~G~ii~~g~nk-dl~ 417 (537)
|..+..+++....|+. ..+.++...+|| |+.
T Consensus 87 d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~ 124 (170)
T 1z0j_A 87 DITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLT 124 (170)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCG
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccc
Confidence 9998877766553221 235566667777 764
No 320
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=97.76 E-value=2.8e-05 Score=69.88 Aligned_cols=107 Identities=17% Similarity=0.331 Sum_probs=70.7
Q ss_pred ccEEEeccCccCccchhhhhcCCCc-eeeecccccc--cceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304 311 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN--RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVS 386 (537)
Q Consensus 311 ~~L~llGl~~~gKs~li~~LSgG~r-qrvs~ti~la--~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVv 386 (537)
..+.++|..++||+++++.|.++.. ....++.+.. ...+..++ ...+.+|||+|.+....++..+++..+++++|+
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 86 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVY 86 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEEEE
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEEEEE
Confidence 4677999999999999999998762 2333444422 22333232 257889999999888888888888999999999
Q ss_pred eCCCcchhhhhhhhhh------cCCcEEEEeccc-chh
Q psy16304 387 HSLSGRPDDRCQVYLM------SCNCQVYLISAK-NLS 417 (537)
Q Consensus 387 dshd~~~~~~~~i~ll------~~G~ii~~g~nk-dl~ 417 (537)
|..+..+++.+..|+. ..+.++....|| |+.
T Consensus 87 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 124 (170)
T 1z08_A 87 DITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124 (170)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGG
T ss_pred ECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccc
Confidence 9999887776653321 145666677777 763
No 321
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=97.76 E-value=4.2e-05 Score=76.14 Aligned_cols=26 Identities=35% Similarity=0.539 Sum_probs=23.9
Q ss_pred CCeEEEEeCCCCcHHHHHHHHhCCCC
Q psy16304 196 SVPILVLGLDNAGKSSIIKRILGEPI 221 (537)
Q Consensus 196 G~~vgLVG~NGAGKSTLL~~L~G~~~ 221 (537)
..+|+|+|.+|||||||++.|+|..+
T Consensus 26 ~~~i~vvG~~~~GKSSLln~l~g~~~ 51 (299)
T 2aka_B 26 LPQIAVVGGQSAGKSSVLENFVGRDF 51 (299)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHCCCc
Confidence 46899999999999999999999865
No 322
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=97.76 E-value=3.8e-05 Score=68.63 Aligned_cols=107 Identities=20% Similarity=0.249 Sum_probs=75.8
Q ss_pred ccEEEeccCccCccchhhhhcCCCc-eeeeccccccc-ceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEe
Q psy16304 311 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSH 387 (537)
Q Consensus 311 ~~L~llGl~~~gKs~li~~LSgG~r-qrvs~ti~la~-all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvd 387 (537)
..+.++|..++||+++++.|.++.. ....++.+... ..+..++ ...+.+|||+|.+....++..+++..+++++|+|
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 83 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYS 83 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEE
Confidence 4577999999999999999998763 23334444221 1122222 2678899999998888889999999999999999
Q ss_pred CCCcchhhhhhhhh---h----cCCcEEEEeccc-chh
Q psy16304 388 SLSGRPDDRCQVYL---M----SCNCQVYLISAK-NLS 417 (537)
Q Consensus 388 shd~~~~~~~~i~l---l----~~G~ii~~g~nk-dl~ 417 (537)
..+..+++.+..|+ . ..+.++....|| |+.
T Consensus 84 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 121 (167)
T 1c1y_A 84 ITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 121 (167)
T ss_dssp TTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCG
T ss_pred CCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECcccc
Confidence 99987776654222 1 136667777777 763
No 323
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.76 E-value=1.4e-05 Score=75.09 Aligned_cols=33 Identities=21% Similarity=0.365 Sum_probs=28.3
Q ss_pred CCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304 193 DFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG 229 (537)
Q Consensus 193 ~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G 229 (537)
+.+|.+++|+|+|||||||++++|.+. ..|+.|
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~----~~~~~~ 35 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFED----PSTSYK 35 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHC----TTCCEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHh----hCCCeE
Confidence 457999999999999999999999998 656554
No 324
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=97.75 E-value=3.8e-05 Score=71.11 Aligned_cols=108 Identities=22% Similarity=0.339 Sum_probs=76.9
Q ss_pred CccEEEeccCccCccchhhhhcCCCce-eeecccccc--cceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEE
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEPII-SLVPTVGFN--RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLV 385 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~rq-rvs~ti~la--~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlV 385 (537)
...+.++|..++||+++++.|.++... ...++.+.. ...+..++ ...+.+|||+|.+.+..++..+++..+++++|
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v 100 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV 100 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEEEE
Confidence 456789999999999999999988733 233444422 22233233 25789999999988888889999999999999
Q ss_pred EeCCCcchhhhhhhhhh------cCCcEEEEeccc-chh
Q psy16304 386 SHSLSGRPDDRCQVYLM------SCNCQVYLISAK-NLS 417 (537)
Q Consensus 386 vdshd~~~~~~~~i~ll------~~G~ii~~g~nk-dl~ 417 (537)
+|..+..+++.+..|+. ..+.++....|| |+.
T Consensus 101 ~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~ 139 (191)
T 2a5j_A 101 YDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE 139 (191)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccC
Confidence 99999887776653332 136667777777 763
No 325
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=97.75 E-value=3.4e-05 Score=72.30 Aligned_cols=108 Identities=25% Similarity=0.383 Sum_probs=73.9
Q ss_pred CccEEEeccCccCccchhhhhcCCCc-eeeecccccc--cceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEE
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN--RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLV 385 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~r-qrvs~ti~la--~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlV 385 (537)
...+.++|..++||+++++.|.++.. ....++.+.. ...+..++ ...+.+|||+|.+.+..+|..+++..+++++|
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 104 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLV 104 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEE
Confidence 45678999999999999999998873 2333444422 22232232 25789999999988888888999999999999
Q ss_pred EeCCCcchhhhhhhhhh------cCCcEEEEeccc-chh
Q psy16304 386 SHSLSGRPDDRCQVYLM------SCNCQVYLISAK-NLS 417 (537)
Q Consensus 386 vdshd~~~~~~~~i~ll------~~G~ii~~g~nk-dl~ 417 (537)
+|..+..+++.+..|+. ..+.++...+|| |+.
T Consensus 105 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 143 (200)
T 2o52_A 105 YDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLD 143 (200)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGG
T ss_pred EECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcc
Confidence 99999888776664432 246677777777 763
No 326
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=97.75 E-value=4.8e-05 Score=79.90 Aligned_cols=83 Identities=19% Similarity=0.118 Sum_probs=43.7
Q ss_pred eEEEEeCCCCcHHHHHHHHhCCCC-------ccccCceeeeeEE-----------------EEECC--cEEEEEeecCCC
Q psy16304 198 PILVLGLDNAGKSSIIKRILGEPI-------ISLVPTVGFNRAR-----------------VEYGN--KYEVFLYDLGGS 251 (537)
Q Consensus 198 ~vgLVG~NGAGKSTLL~~L~G~~~-------~~~~Pt~G~t~~~-----------------i~i~g--~~~i~~~D~~G~ 251 (537)
+++|+|.+|||||||++.|+|... ++..|+.|+..-. ..+++ ...+.+||++|+
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG~ 81 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAGL 81 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCCc
Confidence 689999999999999999999752 1224555621111 01232 367999999998
Q ss_pred chhhHHHHhhhhccccCCCCCCCccceeeEEee
Q psy16304 252 EDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIM 284 (537)
Q Consensus 252 ~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~D 284 (537)
.+..... +.++ .........++++++|+|
T Consensus 82 ~~~a~~~-~~l~---~~~l~~i~~aD~il~VvD 110 (397)
T 1wxq_A 82 VPGAHEG-RGLG---NKFLDDLRMASALIHVVD 110 (397)
T ss_dssp -----------------CCCSSTTCSEEEEEEE
T ss_pred ccchhhh-hhHH---HHHHHHHhcCCEEEEEEe
Confidence 6422100 1111 111122345899999999
No 327
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=97.75 E-value=5.3e-05 Score=68.88 Aligned_cols=108 Identities=19% Similarity=0.315 Sum_probs=77.0
Q ss_pred CccEEEeccCccCccchhhhhcCCCce-eeecccccc--cceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEE
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEPII-SLVPTVGFN--RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLV 385 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~rq-rvs~ti~la--~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlV 385 (537)
...+.++|..++||+++++.|.++... ...++.+.. ...+..++ ...+.+|||+|.+.+...|..+++..+++++|
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 91 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 91 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEEEE
Confidence 356789999999999999999988732 222343422 22222232 25889999999988888899999999999999
Q ss_pred EeCCCcchhhhhhhhhh---c---CCcEEEEeccc-chh
Q psy16304 386 SHSLSGRPDDRCQVYLM---S---CNCQVYLISAK-NLS 417 (537)
Q Consensus 386 vdshd~~~~~~~~i~ll---~---~G~ii~~g~nk-dl~ 417 (537)
+|..+..+++.+..|+. . .+.++....|| |+.
T Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 130 (181)
T 2efe_B 92 FDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLL 130 (181)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccc
Confidence 99998887766553321 1 35667777777 763
No 328
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=97.74 E-value=5.5e-05 Score=68.38 Aligned_cols=107 Identities=20% Similarity=0.370 Sum_probs=76.7
Q ss_pred ccEEEeccCccCccchhhhhcCCCc-eeeeccccc--ccceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304 311 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGF--NRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVS 386 (537)
Q Consensus 311 ~~L~llGl~~~gKs~li~~LSgG~r-qrvs~ti~l--a~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVv 386 (537)
..+.++|..++||+++++.|.++.. ....++.+. ....+..++ ...+.+|||+|.+.+...|..+++..+++++|+
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 94 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVY 94 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEE
Confidence 5678999999999999999987762 223333332 222232232 257889999999888888899999999999999
Q ss_pred eCCCcchhhhhhhhhh------cCCcEEEEeccc-chh
Q psy16304 387 HSLSGRPDDRCQVYLM------SCNCQVYLISAK-NLS 417 (537)
Q Consensus 387 dshd~~~~~~~~i~ll------~~G~ii~~g~nk-dl~ 417 (537)
|..+..+++....|+. ..+.++....|| |+.
T Consensus 95 d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 132 (179)
T 2y8e_A 95 DITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLS 132 (179)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGG
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccc
Confidence 9998877766553332 145666677777 764
No 329
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=97.74 E-value=2.9e-05 Score=79.31 Aligned_cols=103 Identities=16% Similarity=0.144 Sum_probs=74.4
Q ss_pred cEEEeccCccCccchhhhhcCCCce----eeecccccccceeccCCceEEEEEecCchhhHHH---HHHHHHhcCCEEEE
Q psy16304 312 PILVLGLDNAGKSSIIKRILGEPII----SLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRT---IWKQYLGTVSQTLL 384 (537)
Q Consensus 312 ~L~llGl~~~gKs~li~~LSgG~rq----rvs~ti~la~all~~~e~p~lllLDT~Gl~~~~~---l~~~~~~~~~~vIl 384 (537)
++.++|..++||++++..+.++... .+.+|+++....+. .. ..+.+|||+|++.++. .++.|++.++++|+
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~-v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~Il 78 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TL-IDLAVMELPGQLNYFEPSYDSERLFKSVGALVY 78 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SS-SCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cE-EEEEEEECCCchhccchhhhhhhhccCCCEEEE
Confidence 3678999999999999877766532 35677776555443 22 6899999999988753 46899999999999
Q ss_pred EEeCCCcchhhhhh---hhhh-----cCCcEEEEeccc-chh
Q psy16304 385 VSHSLSGRPDDRCQ---VYLM-----SCNCQVYLISAK-NLS 417 (537)
Q Consensus 385 Vvdshd~~~~~~~~---i~ll-----~~G~ii~~g~nk-dl~ 417 (537)
|+|.+++ +.+... .++. ..+.++...+|| |+.
T Consensus 79 V~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~ 119 (331)
T 3r7w_B 79 VIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGL 119 (331)
T ss_dssp ECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSS
T ss_pred EEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccC
Confidence 9999987 333322 2221 245677888888 774
No 330
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.74 E-value=1e-05 Score=77.06 Aligned_cols=27 Identities=15% Similarity=0.037 Sum_probs=25.1
Q ss_pred CCCCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304 193 DFRSVPILVLGLDNAGKSSIIKRILGE 219 (537)
Q Consensus 193 ~~~G~~vgLVG~NGAGKSTLL~~L~G~ 219 (537)
+.+|++++|+||||||||||+++|+|.
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999999995
No 331
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.74 E-value=5.9e-06 Score=83.84 Aligned_cols=39 Identities=23% Similarity=0.313 Sum_probs=25.5
Q ss_pred ccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEE
Q psy16304 191 LFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEY 237 (537)
Q Consensus 191 l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i 237 (537)
+...+|++++|+|+||||||||+|+|.|. ..|+.| .+.+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~----~~~~~G----~I~~ 206 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPE----LGLRTN----EISE 206 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccc----cccccc----ceee
Confidence 34557999999999999999999999999 889999 6665
No 332
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.73 E-value=4.8e-05 Score=78.53 Aligned_cols=24 Identities=38% Similarity=0.672 Sum_probs=22.3
Q ss_pred eEEEEeCCCCcHHHHHHHHhCCCC
Q psy16304 198 PILVLGLDNAGKSSIIKRILGEPI 221 (537)
Q Consensus 198 ~vgLVG~NGAGKSTLL~~L~G~~~ 221 (537)
.|+|||++|||||||++.|+|..+
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g~~~ 59 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVGKDF 59 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCc
Confidence 899999999999999999999643
No 333
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=97.73 E-value=7e-06 Score=94.52 Aligned_cols=96 Identities=13% Similarity=0.079 Sum_probs=70.3
Q ss_pred EeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchh--hHHHHH---HHHHhcCCEEEEEEe
Q psy16304 315 VLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSE--DFRTIW---KQYLGTVSQTLLVSH 387 (537)
Q Consensus 315 llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~--~~~~l~---~~~~~~~~~vIlVvd 387 (537)
.+|+........+.+|||||+||+ ++|+++....+ +.+++|| |+|++ ....++ +.+. ..+.+++++
T Consensus 450 ~vgL~~l~l~r~~~~LSGGe~QRv----~LAraL~~~p~-~~lllLDEPT~gLD~~~~~~l~~~L~~L~-~~G~TvivV- 522 (916)
T 3pih_A 450 DVGLEYLTLSRSATTLSGGESQRI----RLATQIGSGLT-GVIYVLDEPTIGLHPRDTERLIKTLKKLR-DLGNTVIVV- 522 (916)
T ss_dssp TTTCTTCBTTSBGGGCCHHHHHHH----HHHHHHHTTCC-SCEEEEECTTTTCCGGGHHHHHHHHHHTT-TTTCEEEEE-
T ss_pred HcCCccccccCCcccCCHHHHHHH----HHHHHHhhCCC-CcEEEEECCccCCCHHHHHHHHHHHHHHH-hcCCEEEEE-
Confidence 467665434556899999999999 99999996333 5699999 99992 223333 3332 334577777
Q ss_pred CCCcchhhhhh-hhhh------cCCcEEEEecccchh
Q psy16304 388 SLSGRPDDRCQ-VYLM------SCNCQVYLISAKNLS 417 (537)
Q Consensus 388 shd~~~~~~~~-i~ll------~~G~ii~~g~nkdl~ 417 (537)
+||++....++ ++.| +.|+++..|++.++.
T Consensus 523 tHd~~~~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~ 559 (916)
T 3pih_A 523 EHDEEVIRNADHIIDIGPGGGTNGGRVVFQGTVDELL 559 (916)
T ss_dssp CCCHHHHHTCSEEEEEESSSGGGCSEEEEEECHHHHH
T ss_pred eCCHHHHHhCCEEEEEcCCcccCCCEEEEeechhhhh
Confidence 89988776655 7888 899999999988764
No 334
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=97.73 E-value=4.5e-05 Score=77.07 Aligned_cols=106 Identities=22% Similarity=0.350 Sum_probs=79.5
Q ss_pred ccEEEeccCccCccchhhhhcCCCce----eeecccccccceecc-CCceEEEEEecCchhhH-----HHHHHHHHhcCC
Q psy16304 311 VPILVLGLDNAGKSSIIKRILGEPII----SLVPTVGFNRARVEY-GNKYEVFLYDLGGSEDF-----RTIWKQYLGTVS 380 (537)
Q Consensus 311 ~~L~llGl~~~gKs~li~~LSgG~rq----rvs~ti~la~all~~-~e~p~lllLDT~Gl~~~-----~~l~~~~~~~~~ 380 (537)
..+.++|.+++||+++++.|.++... ...+|++.....+.. ++ ..+.+|||+|++.+ ..++..+++..+
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~-~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad 82 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGN-MTLNLWDCGGQDVFMENYFTKQKDHIFQMVQ 82 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTT-EEEEEEEECCSHHHHHHHHTTTHHHHHTTCS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCc-eEEEEEECCCcHHHhhhhhhhHHHHHhccCC
Confidence 46789999999999999999888533 344555544444332 33 78999999999877 567788889999
Q ss_pred EEEEEEeCCCcchhhhhhhh---hh-----cCCcEEEEeccc-chh
Q psy16304 381 QTLLVSHSLSGRPDDRCQVY---LM-----SCNCQVYLISAK-NLS 417 (537)
Q Consensus 381 ~vIlVvdshd~~~~~~~~i~---ll-----~~G~ii~~g~nk-dl~ 417 (537)
++++|+|..+..+++.+..| +. ..+.++...+|| |+.
T Consensus 83 ~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~ 128 (307)
T 3r7w_A 83 VLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLV 128 (307)
T ss_dssp EEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGS
T ss_pred EEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeccccc
Confidence 99999999999887766422 22 237788888888 764
No 335
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=97.72 E-value=6.2e-05 Score=70.88 Aligned_cols=108 Identities=17% Similarity=0.252 Sum_probs=73.7
Q ss_pred CccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCC--ceEEEEEecCchhhHHH-HHHHHHhcCCEEEEEE
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGN--KYEVFLYDLGGSEDFRT-IWKQYLGTVSQTLLVS 386 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e--~p~lllLDT~Gl~~~~~-l~~~~~~~~~~vIlVv 386 (537)
...+.++|..++||+++++.|.++......++.......+..++ ...+.+|||+|++.+.. +|+.|++..+++++|+
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~ 86 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVV 86 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEE
Confidence 45678999999999999999998873322222222222233331 26899999999988877 8899999999999999
Q ss_pred eCCCcch-hhhhh-hhh--------hcCCcEEEEeccc-chh
Q psy16304 387 HSLSGRP-DDRCQ-VYL--------MSCNCQVYLISAK-NLS 417 (537)
Q Consensus 387 dshd~~~-~~~~~-i~l--------l~~G~ii~~g~nk-dl~ 417 (537)
|..+... ..... .|. ...+.++...+|| |+.
T Consensus 87 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 128 (214)
T 2fh5_B 87 DSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIA 128 (214)
T ss_dssp ETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTST
T ss_pred ECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCC
Confidence 9887432 22222 111 1346777788888 774
No 336
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.71 E-value=1e-05 Score=85.47 Aligned_cols=33 Identities=18% Similarity=0.259 Sum_probs=28.7
Q ss_pred cccccCCCCCe--EEEEeCCCCcHHHHHHHHhCCC
Q psy16304 188 HLSLFDFRSVP--ILVLGLDNAGKSSIIKRILGEP 220 (537)
Q Consensus 188 ~~~l~~~~G~~--vgLVG~NGAGKSTLL~~L~G~~ 220 (537)
.+++.+.+|++ ++|+|+||||||||+|+|+|..
T Consensus 32 ~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 32 LVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp HHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred CCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 34577889999 9999999999999999999984
No 337
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=97.70 E-value=2.3e-05 Score=74.47 Aligned_cols=109 Identities=20% Similarity=0.248 Sum_probs=79.4
Q ss_pred CCccEEEeccCccCccchhhhhcCCC-ceeeecccccccc-eeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEE
Q psy16304 309 RSVPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFNRA-RVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLV 385 (537)
Q Consensus 309 ~~~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la~a-ll~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlV 385 (537)
....+.++|..++||+++++.|.++. .....+|.+.... .+..++ ...+.+|||+|.+.+..+|..+++.++++++|
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 105 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLC 105 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEE
Confidence 34678899999999999999999887 3334455553322 122122 26788999999998888899999999999999
Q ss_pred EeCCCcchhhh-hhhhhh-----cCCcEEEEeccc-chh
Q psy16304 386 SHSLSGRPDDR-CQVYLM-----SCNCQVYLISAK-NLS 417 (537)
Q Consensus 386 vdshd~~~~~~-~~i~ll-----~~G~ii~~g~nk-dl~ 417 (537)
+|..+..+++. ...|+. ..+.++...+|| |+.
T Consensus 106 ~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 144 (214)
T 3q3j_B 106 FDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLR 144 (214)
T ss_dssp EETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGG
T ss_pred EECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhc
Confidence 99999988877 343332 236677777777 764
No 338
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=97.70 E-value=0.0001 Score=67.14 Aligned_cols=108 Identities=18% Similarity=0.228 Sum_probs=76.4
Q ss_pred CccEEEeccCccCccchhhhhcCCCc-eeeeccccccc-ceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVS 386 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~r-qrvs~ti~la~-all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVv 386 (537)
...+.++|..++||+++++.|.++.. ....++.+... ..+..++ ...+.+|||+|.+.+..+|..+++..+++++|+
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 97 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVF 97 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEEEE
Confidence 35678999999999999999998772 23333333211 1222232 247889999999888889999999999999999
Q ss_pred eCCCcchhhhhhhhhh-------cCCcEEEEeccc-chh
Q psy16304 387 HSLSGRPDDRCQVYLM-------SCNCQVYLISAK-NLS 417 (537)
Q Consensus 387 dshd~~~~~~~~i~ll-------~~G~ii~~g~nk-dl~ 417 (537)
|..+...++.+..|+. ..+.++....|| |+.
T Consensus 98 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 136 (187)
T 2a9k_A 98 SITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 136 (187)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGG
T ss_pred ECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 9998877766542221 136667777777 764
No 339
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=97.69 E-value=6.3e-05 Score=69.50 Aligned_cols=108 Identities=21% Similarity=0.334 Sum_probs=77.5
Q ss_pred CccEEEeccCccCccchhhhhcCCCce-eeeccccccc--ceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEE
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEPII-SLVPTVGFNR--ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLV 385 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~rq-rvs~ti~la~--all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlV 385 (537)
...+.++|..++||+++++.|.++... ...++.+... ..+..++ ...+.+|||+|.+.+..+|..+++..+++++|
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v 104 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLV 104 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEEEE
Confidence 356789999999999999999988733 2334444222 2222222 26788999999988888899999999999999
Q ss_pred EeCCCcchhhhhhhhh---h---cCCcEEEEeccc-chh
Q psy16304 386 SHSLSGRPDDRCQVYL---M---SCNCQVYLISAK-NLS 417 (537)
Q Consensus 386 vdshd~~~~~~~~i~l---l---~~G~ii~~g~nk-dl~ 417 (537)
+|..+..++..+..|+ . ..+.++....|| |+.
T Consensus 105 ~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~ 143 (193)
T 2oil_A 105 FDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLS 143 (193)
T ss_dssp EETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGG
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcc
Confidence 9999888776655332 1 135667777777 774
No 340
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.69 E-value=9.2e-06 Score=88.12 Aligned_cols=44 Identities=20% Similarity=0.229 Sum_probs=37.6
Q ss_pred cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECC
Q psy16304 188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGN 239 (537)
Q Consensus 188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g 239 (537)
.+++.+.+|..++|+|+||||||||+++|+|. +.|+.| .+.+.|
T Consensus 252 ~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~----i~~~~g----iitied 295 (511)
T 2oap_1 252 YLWLAIEHKFSAIVVGETASGKTTTLNAIMMF----IPPDAK----VVSIED 295 (511)
T ss_dssp HHHHHHHTTCCEEEEESTTSSHHHHHHHHGGG----SCTTCC----EEEEES
T ss_pred HHHHHHhCCCEEEEECCCCCCHHHHHHHHHhh----CCCCCC----EEEEcC
Confidence 34555678999999999999999999999999 889999 666654
No 341
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=97.69 E-value=8e-05 Score=69.27 Aligned_cols=108 Identities=19% Similarity=0.248 Sum_probs=77.3
Q ss_pred CccEEEeccCccCccchhhhhcCCCc-eeeecccccc-cceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN-RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVS 386 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~r-qrvs~ti~la-~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVv 386 (537)
...+.++|..++||+++++.|.++.. ....++.+.. ...+..++ ...+.+|||+|.+.+..++..+++..+++++|+
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~ 93 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVF 93 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEE
Confidence 35678999999999999999998772 2333333321 12222233 247889999999888889999999999999999
Q ss_pred eCCCcchhhhhhhhhh-------cCCcEEEEeccc-chh
Q psy16304 387 HSLSGRPDDRCQVYLM-------SCNCQVYLISAK-NLS 417 (537)
Q Consensus 387 dshd~~~~~~~~i~ll-------~~G~ii~~g~nk-dl~ 417 (537)
|..+..+++.+..|+. ..+.++....|+ |+.
T Consensus 94 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 132 (206)
T 2bov_A 94 SITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 132 (206)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCG
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCcc
Confidence 9999887766553221 136667777777 764
No 342
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=97.69 E-value=5.4e-05 Score=70.06 Aligned_cols=107 Identities=21% Similarity=0.251 Sum_probs=73.1
Q ss_pred CccEEEeccCccCccchhhhhcCCC-ceeeeccccccc-ceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVS 386 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la~-all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVv 386 (537)
...+.++|..++||+++++.|.++. .....+|.+... ..+..++ ...+.+|||+|++.+.. +..+++..+++++|+
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~~~~ilv~ 99 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRN-CERYLNWAHAFLVVY 99 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCC-THHHHTTCSEEEEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchh-HHHHHhhCCEEEEEE
Confidence 4568899999999999999999887 334445554221 1122232 25788999999965544 367888899999999
Q ss_pred eCCCcchhhhhhhhhh---c------CCcEEEEeccc-chh
Q psy16304 387 HSLSGRPDDRCQVYLM---S------CNCQVYLISAK-NLS 417 (537)
Q Consensus 387 dshd~~~~~~~~i~ll---~------~G~ii~~g~nk-dl~ 417 (537)
|..+..+++.+..|+. . .+.++...+|| |+.
T Consensus 100 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 140 (187)
T 3c5c_A 100 SVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMA 140 (187)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGG
T ss_pred ECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchh
Confidence 9999888877663321 1 46667777777 763
No 343
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=97.68 E-value=5.6e-05 Score=68.44 Aligned_cols=106 Identities=18% Similarity=0.292 Sum_probs=75.0
Q ss_pred ccEEEeccCccCccchhhhhcCCC-ceeeecccccc--cceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304 311 VPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFN--RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVS 386 (537)
Q Consensus 311 ~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la--~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVv 386 (537)
..+.++|..++||+++++.|.++. .....++.+.. ...+..++ ...+.+|||+|.+.....+..+++..+++++|+
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~ 87 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTF 87 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEE
Confidence 457799999999999999999876 33444444432 22232233 257889999999999999999999999999999
Q ss_pred eCCCcchhhhhhhhhh------c----CCcEEEEeccc-ch
Q psy16304 387 HSLSGRPDDRCQVYLM------S----CNCQVYLISAK-NL 416 (537)
Q Consensus 387 dshd~~~~~~~~i~ll------~----~G~ii~~g~nk-dl 416 (537)
|..+..+++.+..|+. . .+.++....|| |+
T Consensus 88 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl 128 (177)
T 1wms_A 88 SVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDI 128 (177)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTC
T ss_pred ECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcc
Confidence 9998887766542221 1 45566666676 66
No 344
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=97.67 E-value=8.1e-05 Score=69.59 Aligned_cols=108 Identities=19% Similarity=0.211 Sum_probs=73.4
Q ss_pred CccEEEeccCccCccchhhhhcCCCce-eeecccc--cccceeccCC-ceEEEEEecCchhhHHH-HHHHHHhcCCEEEE
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEPII-SLVPTVG--FNRARVEYGN-KYEVFLYDLGGSEDFRT-IWKQYLGTVSQTLL 384 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~rq-rvs~ti~--la~all~~~e-~p~lllLDT~Gl~~~~~-l~~~~~~~~~~vIl 384 (537)
...+.++|.+++||+++++.|.+.... ...++.+ .....+..++ ...+.+|||+|.+.... ++..+++.++++++
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~il 102 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLI 102 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEEEE
Confidence 356789999999999999999765421 1111111 1122222233 25778999999965543 67888888999999
Q ss_pred EEeCCCcchhhhhhhhhhc-------CCcEEEEeccc-chh
Q psy16304 385 VSHSLSGRPDDRCQVYLMS-------CNCQVYLISAK-NLS 417 (537)
Q Consensus 385 Vvdshd~~~~~~~~i~ll~-------~G~ii~~g~nk-dl~ 417 (537)
|+|..+..+++.+..|+.+ .+.++...+|| |+.
T Consensus 103 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 143 (195)
T 3cbq_A 103 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA 143 (195)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCT
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhcc
Confidence 9999999888776644321 35667777777 763
No 345
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=97.67 E-value=4.5e-05 Score=69.13 Aligned_cols=107 Identities=24% Similarity=0.355 Sum_probs=76.3
Q ss_pred ccEEEeccCccCccchhhhhcCCCce-eeeccccc--ccceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304 311 VPILVLGLDNAGKSSIIKRILGEPII-SLVPTVGF--NRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVS 386 (537)
Q Consensus 311 ~~L~llGl~~~gKs~li~~LSgG~rq-rvs~ti~l--a~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVv 386 (537)
..+.++|..++||+++++.|.++... ...++.+. ....+..++ ...+.+|||+|.+.....+..+++..+++++|+
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 89 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 89 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEEEEE
Confidence 45779999999999999999988732 33333332 222232232 257889999999888888888899999999999
Q ss_pred eCCCcchhhhhhhhhhc-----CCcEEEEeccc-chh
Q psy16304 387 HSLSGRPDDRCQVYLMS-----CNCQVYLISAK-NLS 417 (537)
Q Consensus 387 dshd~~~~~~~~i~ll~-----~G~ii~~g~nk-dl~ 417 (537)
|..+..+++.+..|+.. .+.++....|| |+.
T Consensus 90 d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 126 (181)
T 3tw8_B 90 DVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDP 126 (181)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCG
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCc
Confidence 99998887776633321 34666677777 763
No 346
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=97.66 E-value=3.8e-06 Score=82.63 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=22.3
Q ss_pred CCCeEEEEeCC---------CCcHHHHHHHHhC
Q psy16304 195 RSVPILVLGLD---------NAGKSSIIKRILG 218 (537)
Q Consensus 195 ~G~~vgLVG~N---------GAGKSTLL~~L~G 218 (537)
+..+|+|||.+ |||||||++.+++
T Consensus 18 ~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~ 50 (255)
T 3c5h_A 18 GTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVR 50 (255)
T ss_dssp SCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHC
T ss_pred ceeEEEEECCCccccccCCCCcCHHHHHHHHHh
Confidence 45789999999 9999999999998
No 347
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=97.66 E-value=2.4e-05 Score=71.44 Aligned_cols=107 Identities=21% Similarity=0.282 Sum_probs=76.2
Q ss_pred CccEEEeccCccCccchhhhhcCCC-ceeeeccccccc-ceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVS 386 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la~-all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVv 386 (537)
...+.++|..++||+++++.|.++. .....++.+... ..+..++ ...+.+|||+|.+.+..++..+++..+++++|+
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~ 85 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVY 85 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEEE
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEEE
Confidence 3457799999999999999999777 344445544322 2222232 256789999999887777888888999999999
Q ss_pred eCCCcchhhhhhhhhh-------cCCcEEEEeccc-ch
Q psy16304 387 HSLSGRPDDRCQVYLM-------SCNCQVYLISAK-NL 416 (537)
Q Consensus 387 dshd~~~~~~~~i~ll-------~~G~ii~~g~nk-dl 416 (537)
|..+..+++.+..|+. ..+.++...+|| |+
T Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 123 (181)
T 3t5g_A 86 SVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDL 123 (181)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTC
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 9999888877653321 135667777777 76
No 348
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.66 E-value=1.1e-05 Score=79.99 Aligned_cols=54 Identities=26% Similarity=0.405 Sum_probs=35.2
Q ss_pred CeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEE--EEECCcEEEEEeecCCCc
Q psy16304 197 VPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRAR--VEYGNKYEVFLYDLGGSE 252 (537)
Q Consensus 197 ~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~--i~i~g~~~i~~~D~~G~~ 252 (537)
.+++++|.+|+|||||+|.|.|.......++.|+|+.. +.++ ..+.+||++|..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~--~~~~l~DtpG~~ 155 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSLE--NGVKILDTPGIL 155 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEECT--TSCEEESSCEEC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEeC--CCEEEEECCCcc
Confidence 58999999999999999999998665566777865532 3332 357889999875
No 349
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=97.66 E-value=6.6e-05 Score=68.56 Aligned_cols=108 Identities=19% Similarity=0.258 Sum_probs=75.8
Q ss_pred CccEEEeccCccCccchhhhhcCCC-ceeeecccccc-cceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFN-RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVS 386 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la-~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVv 386 (537)
...+.++|..++||+++++.|.++. .....++.+.. ...+..++ ...+.+|||+|.+.+..++..+++..+++++|+
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 97 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVY 97 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEE
Confidence 4567899999999999999999775 22333333311 22222233 245667999999888888999999999999999
Q ss_pred eCCCcchhhhhhhhhh-------cCCcEEEEeccc-chh
Q psy16304 387 HSLSGRPDDRCQVYLM-------SCNCQVYLISAK-NLS 417 (537)
Q Consensus 387 dshd~~~~~~~~i~ll-------~~G~ii~~g~nk-dl~ 417 (537)
|..+..+++.+..|+. ..+.++...+|| |+.
T Consensus 98 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 136 (183)
T 3kkq_A 98 SVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLM 136 (183)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCS
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCch
Confidence 9999887776653221 245566677777 763
No 350
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=97.65 E-value=4.3e-05 Score=72.19 Aligned_cols=108 Identities=18% Similarity=0.205 Sum_probs=79.0
Q ss_pred CccEEEeccCccCccchhhhhcCCC-ceeeecccccccceec--cCC--ceEEEEEecCchhhHHHHHHHHHhcCCEEEE
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFNRARVE--YGN--KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLL 384 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la~all~--~~e--~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIl 384 (537)
...+.++|..++||+++++.|.++. .....++.+....... ..+ ...+.+|||+|.+....++..++...+++++
T Consensus 11 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 90 (218)
T 4djt_A 11 TYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAIL 90 (218)
T ss_dssp EEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEEEE
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEEEE
Confidence 3567899999999999999999887 4445555553332221 111 1568899999998888888899999999999
Q ss_pred EEeCCCcchhhhhhhhhh------cCCcEEEEeccc-chh
Q psy16304 385 VSHSLSGRPDDRCQVYLM------SCNCQVYLISAK-NLS 417 (537)
Q Consensus 385 Vvdshd~~~~~~~~i~ll------~~G~ii~~g~nk-dl~ 417 (537)
|+|..+..+++.+..|+. ..+.++....|| |+.
T Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (218)
T 4djt_A 91 FFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIK 130 (218)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 999999888776653321 245667777777 763
No 351
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=97.65 E-value=5.4e-05 Score=68.56 Aligned_cols=108 Identities=19% Similarity=0.238 Sum_probs=76.3
Q ss_pred CccEEEeccCccCccchhhhhcCCC-ceeeeccccccc-ceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVS 386 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la~-all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVv 386 (537)
...+.++|..++||+++++.|.++. .....+|.+... ..+..++ ...+.+|||+|.+.+..++..+++..+++++|+
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 88 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVF 88 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEEEEE
Confidence 3567899999999999999999886 223333333221 2222232 257889999999888888889999999999999
Q ss_pred eCCCcchhhhhhhhhh-------cCCcEEEEeccc-chh
Q psy16304 387 HSLSGRPDDRCQVYLM-------SCNCQVYLISAK-NLS 417 (537)
Q Consensus 387 dshd~~~~~~~~i~ll-------~~G~ii~~g~nk-dl~ 417 (537)
|..+..++..+..|+. ..+.++....|| |+.
T Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 127 (181)
T 2fn4_A 89 AINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLE 127 (181)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGG
T ss_pred eCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 9999877766552221 235666777777 764
No 352
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=97.65 E-value=1.8e-05 Score=75.25 Aligned_cols=108 Identities=17% Similarity=0.242 Sum_probs=81.4
Q ss_pred CccEEEeccCccCccchhhhhcCCC-ceeeecccccccceec--cCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEE
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFNRARVE--YGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLV 385 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la~all~--~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlV 385 (537)
...+.++|..++||+++++.|..|. ...+.++.+....... .+. ...+.+|||+|.+.+..++..+++..+++++|
T Consensus 15 ~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v 94 (221)
T 3gj0_A 15 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM 94 (221)
T ss_dssp EEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEE
Confidence 4568899999999999999977666 5666777765443321 122 26788999999988888889999999999999
Q ss_pred EeCCCcchhhhhhhhhhc-----CCcEEEEeccc-chh
Q psy16304 386 SHSLSGRPDDRCQVYLMS-----CNCQVYLISAK-NLS 417 (537)
Q Consensus 386 vdshd~~~~~~~~i~ll~-----~G~ii~~g~nk-dl~ 417 (537)
+|..+..++..+..|+.. .+.++...+|| |+.
T Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 132 (221)
T 3gj0_A 95 FDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIK 132 (221)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSS
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccc
Confidence 999998888776533322 36667777777 764
No 353
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.64 E-value=1.8e-05 Score=79.25 Aligned_cols=56 Identities=30% Similarity=0.478 Sum_probs=35.7
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEE--EEECCcEEEEEeecCCCc
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRAR--VEYGNKYEVFLYDLGGSE 252 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~--i~i~g~~~i~~~D~~G~~ 252 (537)
.+.+++++|.+|+|||||+|.|.|.......+..|+|+.. +.++ ..+.++|++|..
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~--~~~~l~DtpG~~ 176 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVG--KELELLDTPGIL 176 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEET--TTEEEEECCCCC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEeC--CCEEEEECcCcC
Confidence 4568999999999999999999998665566777766543 3332 357889999975
No 354
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=97.64 E-value=8.7e-05 Score=78.90 Aligned_cols=80 Identities=19% Similarity=0.119 Sum_probs=55.4
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCCccc------------------------------cCceeeeeE----EEEECCc
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPIISL------------------------------VPTVGFNRA----RVEYGNK 240 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~------------------------------~Pt~G~t~~----~i~i~g~ 240 (537)
+..+++++|..|+|||||++.|.+..-... ....|+|.+ .+...+
T Consensus 16 ~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~- 94 (439)
T 3j2k_7 16 EHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK- 94 (439)
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC-
Confidence 456899999999999999999954311000 011344433 234444
Q ss_pred EEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecC
Q psy16304 241 YEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCG 286 (537)
Q Consensus 241 ~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~ 286 (537)
..+.+||++|++++...+...+.. ++++++++|+.
T Consensus 95 ~~~~iiDTPGh~~f~~~~~~~~~~-----------aD~~ilVVDa~ 129 (439)
T 3j2k_7 95 KHFTILDAPGHKSFVPNMIGGASQ-----------ADLAVLVISAR 129 (439)
T ss_pred eEEEEEECCChHHHHHHHHhhHhh-----------CCEEEEEEECC
Confidence 899999999999887665555554 89999999943
No 355
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=97.64 E-value=3.7e-05 Score=69.76 Aligned_cols=107 Identities=15% Similarity=0.257 Sum_probs=67.2
Q ss_pred CccEEEeccCccCccchhhhhcCCC-ceeeeccccc--ccceeccC-C-ceEEEEEecCchhhHHHHHHHHHhcCCEEEE
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGF--NRARVEYG-N-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLL 384 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~l--a~all~~~-e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIl 384 (537)
...+.++|..++||+++++.|.++. .....++.+. ....+..+ + ...+.+|||+|.+.+...|..+++..+++++
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 87 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVL 87 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEEEE
Confidence 3567899999999999999999887 3334444442 22233222 1 2688999999998888888888899999999
Q ss_pred EEeCCCcchhhhhhhhhhc----------CCcEEEEeccc-ch
Q psy16304 385 VSHSLSGRPDDRCQVYLMS----------CNCQVYLISAK-NL 416 (537)
Q Consensus 385 Vvdshd~~~~~~~~i~ll~----------~G~ii~~g~nk-dl 416 (537)
|+|..+..+++.+..|+.. .+.++....|| |+
T Consensus 88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 130 (182)
T 1ky3_A 88 VYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDA 130 (182)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTS
T ss_pred EEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCcc
Confidence 9999998877766533211 45566667777 76
No 356
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=97.63 E-value=7.7e-05 Score=67.80 Aligned_cols=102 Identities=20% Similarity=0.220 Sum_probs=74.1
Q ss_pred CccEEEeccCccCccchhhhhcCCCceeeecccccc-cceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEe
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN-RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSH 387 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la-~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvd 387 (537)
...+.++|.+++||+++++.|.++......+|.+.. ...+..++ ...+.+|||+|++. ..+++.++++++|+|
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv~D 81 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIFVFS 81 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEEEEE
Confidence 356789999999999999999998854455665522 22222233 25688999999975 456778999999999
Q ss_pred CCCcchhhhhhhh---hhc------CCcEEEEeccc-ch
Q psy16304 388 SLSGRPDDRCQVY---LMS------CNCQVYLISAK-NL 416 (537)
Q Consensus 388 shd~~~~~~~~i~---ll~------~G~ii~~g~nk-dl 416 (537)
..+..+++.+..| +.. .+.++...+|| |+
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl 120 (178)
T 2iwr_A 82 LEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRI 120 (178)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTC
T ss_pred CcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 9999888777643 321 35677777787 66
No 357
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=97.63 E-value=1.8e-05 Score=91.00 Aligned_cols=98 Identities=13% Similarity=0.046 Sum_probs=72.6
Q ss_pred EEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCch--hhHHHHH---HHHHhcCCEEEEE
Q psy16304 313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGS--EDFRTIW---KQYLGTVSQTLLV 385 (537)
Q Consensus 313 L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl--~~~~~l~---~~~~~~~~~vIlV 385 (537)
+..+|+........+.+|||||+||+ ++|+++..... +.+++|| |+|| .....++ +.+ +..+.+|||
T Consensus 488 L~~vGL~~l~ldR~~~tLSGGEkQRV----~LA~aL~~~~~-~~llILDEPTagLdp~~~~~L~~~L~~L-r~~G~TVIv 561 (972)
T 2r6f_A 488 LQNVGLDYLTLSRSAGTLSGGEAQRI----RLATQIGSRLT-GVLYVLDEPSIGLHQRDNDRLIATLKSM-RDLGNTLIV 561 (972)
T ss_dssp HHHHTCTTSBSSSBGGGCCHHHHHHH----HHHHHHTTCCC-SCEEEEECTTTTCCGGGHHHHHHHHHHH-HTTTCEEEE
T ss_pred hhhCCCCccccCCccccCCHHHHHHH----HHHHHHhhCCC-CCEEEEeCcccCCCHHHHHHHHHHHHHH-HhCCCEEEE
Confidence 44678765444566899999999999 99999886322 5899999 9999 2333333 444 344567888
Q ss_pred EeCCCcchhhhhh-hhhh------cCCcEEEEecccchh
Q psy16304 386 SHSLSGRPDDRCQ-VYLM------SCNCQVYLISAKNLS 417 (537)
Q Consensus 386 vdshd~~~~~~~~-i~ll------~~G~ii~~g~nkdl~ 417 (537)
+ +||++.+..++ +++| ++|+++..|++.++.
T Consensus 562 V-eHdl~~i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~ 599 (972)
T 2r6f_A 562 V-EHDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 599 (972)
T ss_dssp E-CCCHHHHHSCSEEEEECSSSGGGCCSEEEEECTTTTT
T ss_pred E-ecCHHHHHhCCEEEEeCCCccCCCCEEEEecCHHHHH
Confidence 8 89998776655 7777 789999999988764
No 358
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=97.62 E-value=0.00016 Score=75.91 Aligned_cols=78 Identities=15% Similarity=0.188 Sum_probs=54.7
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEE---------------------C----CcEEEEEeecC
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEY---------------------G----NKYEVFLYDLG 249 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i---------------------~----g~~~i~~~D~~ 249 (537)
+..+++++|..|+|||||++.|+|.... ...|+...++.. . ....+.+||++
T Consensus 7 ~~~~I~vvG~~~~GKSTLi~~L~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP 83 (403)
T 3sjy_A 7 PEVNIGVVGHVDHGKTTLVQAITGIWTS---KKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP 83 (403)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHSCCCC---SSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccc---cccCccccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence 4578999999999999999999995221 122211111110 0 02689999999
Q ss_pred CCchhhHHHHhhhhccccCCCCCCCccceeeEEeecC
Q psy16304 250 GSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCG 286 (537)
Q Consensus 250 G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~ 286 (537)
|++++...+...+.. ++.+++++|+.
T Consensus 84 Gh~~~~~~~~~~~~~-----------~D~~ilVvda~ 109 (403)
T 3sjy_A 84 GHEVLMATMLSGAAL-----------MDGAILVVAAN 109 (403)
T ss_dssp CCGGGHHHHHHHHTT-----------CSEEEEEEETT
T ss_pred CcHHHHHHHHHHHhh-----------CCEEEEEEECC
Confidence 999887766666655 89999999943
No 359
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=97.62 E-value=4e-05 Score=71.76 Aligned_cols=107 Identities=21% Similarity=0.383 Sum_probs=77.7
Q ss_pred ccEEEeccCccCccchhhhhcCCCc-eeeeccccccc--ceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304 311 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR--ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVS 386 (537)
Q Consensus 311 ~~L~llGl~~~gKs~li~~LSgG~r-qrvs~ti~la~--all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVv 386 (537)
..+.++|..++||+++++.|.++.. ....++.+... ..+..++ ...+.+|||+|.+.+..+|..+++..+++++|+
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~ 88 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVY 88 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEEEEE
Confidence 4678999999999999999998873 23334444322 2233233 257899999999888888888899999999999
Q ss_pred eCCCcchhhhhhhhhh------cCCcEEEEeccc-chh
Q psy16304 387 HSLSGRPDDRCQVYLM------SCNCQVYLISAK-NLS 417 (537)
Q Consensus 387 dshd~~~~~~~~i~ll------~~G~ii~~g~nk-dl~ 417 (537)
|..+..+++.+..|+. ..+.++...+|| |+.
T Consensus 89 d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 126 (206)
T 2bcg_Y 89 DVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLK 126 (206)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred ECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 9999887776653331 245666777777 774
No 360
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=97.61 E-value=0.00015 Score=78.90 Aligned_cols=78 Identities=18% Similarity=0.266 Sum_probs=55.1
Q ss_pred CCeEEEEeCCCCcHHHHHHHHhC------------------CCCccc---cCceee----eeEEEEECCcEEEEEeecCC
Q psy16304 196 SVPILVLGLDNAGKSSIIKRILG------------------EPIISL---VPTVGF----NRARVEYGNKYEVFLYDLGG 250 (537)
Q Consensus 196 G~~vgLVG~NGAGKSTLL~~L~G------------------~~~~~~---~Pt~G~----t~~~i~i~g~~~i~~~D~~G 250 (537)
-.+|+|+|..|||||||++.|++ ..+... ....|+ ....+.+.+ ..+.+||++|
T Consensus 13 ~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~-~~i~liDTPG 91 (528)
T 3tr5_A 13 RRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD-YLINLLDTPG 91 (528)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT-EEEEEECCCC
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC-EEEEEEECCC
Confidence 35799999999999999999961 100000 001221 223455665 9999999999
Q ss_pred CchhhHHHHhhhhccccCCCCCCCccceeeEEeec
Q psy16304 251 SEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMC 285 (537)
Q Consensus 251 ~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds 285 (537)
+.++...+...+.. ++++++++|+
T Consensus 92 ~~df~~~~~~~l~~-----------aD~allVvDa 115 (528)
T 3tr5_A 92 HADFTEDTYRTLTA-----------VDSALMVIDA 115 (528)
T ss_dssp STTCCHHHHHGGGG-----------CSEEEEEEET
T ss_pred chhHHHHHHHHHHh-----------CCEEEEEEeC
Confidence 99888777676666 8999999993
No 361
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.61 E-value=2.1e-05 Score=74.38 Aligned_cols=26 Identities=15% Similarity=0.236 Sum_probs=24.2
Q ss_pred CCCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304 194 FRSVPILVLGLDNAGKSSIIKRILGE 219 (537)
Q Consensus 194 ~~G~~vgLVG~NGAGKSTLL~~L~G~ 219 (537)
.+|+++||+|+||||||||+++|+|.
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999999997
No 362
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.61 E-value=2.2e-05 Score=79.34 Aligned_cols=35 Identities=23% Similarity=0.264 Sum_probs=30.6
Q ss_pred CCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEE
Q psy16304 194 FRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEY 237 (537)
Q Consensus 194 ~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i 237 (537)
..|++++|+|+||||||||+|+|. . ..|+.| +|.+
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~-~----~~~~~G----~i~~ 197 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLT-G----EELRTQ----EVSE 197 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHH-S----CCCCCS----CC--
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH-H----hhCccc----cccc
Confidence 368999999999999999999999 9 899999 6665
No 363
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.61 E-value=0.00013 Score=67.62 Aligned_cols=107 Identities=18% Similarity=0.195 Sum_probs=75.5
Q ss_pred CccEEEeccCccCccchhhhhcCCCc-eeeeccccccc-ceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVS 386 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~r-qrvs~ti~la~-all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVv 386 (537)
...+.++|..++||+++++.|.++.. ....++.+... ..+..++ ...+.+|||+|.+. ...+..+++..+++++|+
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~ 106 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFVLVY 106 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEEEEE
Confidence 45688999999999999999998863 23334444221 1122232 25788999999977 777888999999999999
Q ss_pred eCCCcchhhhhhhhh---h----cCCcEEEEeccc-chh
Q psy16304 387 HSLSGRPDDRCQVYL---M----SCNCQVYLISAK-NLS 417 (537)
Q Consensus 387 dshd~~~~~~~~i~l---l----~~G~ii~~g~nk-dl~ 417 (537)
|..+..+++.+..|+ . ..+.++...+|| |+.
T Consensus 107 D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~ 145 (196)
T 2atv_A 107 DITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLD 145 (196)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGG
T ss_pred ECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccc
Confidence 999988777655222 1 145667777777 764
No 364
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=97.61 E-value=8.3e-05 Score=82.35 Aligned_cols=81 Identities=20% Similarity=0.266 Sum_probs=55.7
Q ss_pred CCCCeEEEEeCCCCcHHHHHHHHhCCCCccccC------------------------------ceeeee----EEEEECC
Q psy16304 194 FRSVPILVLGLDNAGKSSIIKRILGEPIISLVP------------------------------TVGFNR----ARVEYGN 239 (537)
Q Consensus 194 ~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~P------------------------------t~G~t~----~~i~i~g 239 (537)
++..+|+++|..|+|||||++.|++........ ..|+|. ..+...
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~- 243 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH- 243 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS-
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC-
Confidence 356789999999999999999998752211110 123322 234444
Q ss_pred cEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecC
Q psy16304 240 KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCG 286 (537)
Q Consensus 240 ~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~ 286 (537)
+..+.+||++|++++...+...+.. ++++++++|+.
T Consensus 244 ~~~~~iiDTPG~e~f~~~~~~~~~~-----------aD~~llVVDa~ 279 (611)
T 3izq_1 244 RANFTIVDAPGHRDFVPNAIMGISQ-----------ADMAILCVDCS 279 (611)
T ss_dssp SCEEEEEECCSSSCHHHHHTTTSSC-----------CSEEEEEEECS
T ss_pred CceEEEEECCCCcccHHHHHHHHhh-----------cCceEEEEECC
Confidence 4889999999998876544444443 89999999943
No 365
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.61 E-value=6.8e-05 Score=69.36 Aligned_cols=108 Identities=19% Similarity=0.262 Sum_probs=76.4
Q ss_pred CccEEEeccCccCccchhhhhcCCCc-eeeecccccc-cceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN-RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVS 386 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~r-qrvs~ti~la-~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVv 386 (537)
...+.++|..++||+++++.|.++.. ....++.+.. ...+..+. ...+.+|||+|.+.+..++..+++..+++++|+
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 87 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVF 87 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEE
T ss_pred eeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEEEE
Confidence 35678999999999999999998773 2333343322 22222232 257889999999888889999999999999999
Q ss_pred eCCCcchhhhhhhhh---hc-----CCcEEEEeccc-chh
Q psy16304 387 HSLSGRPDDRCQVYL---MS-----CNCQVYLISAK-NLS 417 (537)
Q Consensus 387 dshd~~~~~~~~i~l---l~-----~G~ii~~g~nk-dl~ 417 (537)
|..+..+++....++ .+ .+.++....|| |+.
T Consensus 88 d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~ 127 (199)
T 2gf0_A 88 SVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDET 127 (199)
T ss_dssp ETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCS
T ss_pred ECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCC
Confidence 999887776655222 11 24566666777 763
No 366
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=97.61 E-value=9.8e-05 Score=68.13 Aligned_cols=105 Identities=20% Similarity=0.277 Sum_probs=70.4
Q ss_pred CccEEEeccCccCccchhhhhcCCC-ceeeecccccccce--eccCCceEEEEEecCc----------hhhHHHHHHHHH
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFNRAR--VEYGNKYEVFLYDLGG----------SEDFRTIWKQYL 376 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la~al--l~~~e~p~lllLDT~G----------l~~~~~l~~~~~ 376 (537)
...+.++|..++||+++++.|.++. ...+.++.+.+... ...+ ..+.+|||+| .+.+..++..++
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 100 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIN--DELHFVDVPGYGFAKVSKSEREAWGRMIETYI 100 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEET--TTEEEEECCCBCCCSSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEEC--CcEEEEECCCCCccccCHHHHHHHHHHHHHHH
Confidence 4567899999999999999999987 55555555544332 2223 4789999999 677777888888
Q ss_pred hcC---CEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEeccc-ch
Q psy16304 377 GTV---SQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAK-NL 416 (537)
Q Consensus 377 ~~~---~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nk-dl 416 (537)
+.. +++++|+|..+........ .++...+.++....|| |+
T Consensus 101 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl 146 (195)
T 1svi_A 101 TTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADK 146 (195)
T ss_dssp HHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred hhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccc
Confidence 776 7899999988776655543 4444567777777777 76
No 367
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=97.60 E-value=6.1e-05 Score=69.33 Aligned_cols=107 Identities=22% Similarity=0.343 Sum_probs=77.6
Q ss_pred CccEEEeccCccCccchhhhhcCCC-ceeeeccccccc--ceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEE
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFNR--ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLV 385 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la~--all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlV 385 (537)
...+.++|..++||+++++.|.++. .....++.+... ..+..++ ...+.+|||+|.+.+..++..+++..+++++|
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v 94 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILV 94 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEEE
Confidence 3567899999999999999999887 333444444322 2222232 26789999999988888899999999999999
Q ss_pred EeCCCcchhhhhhhhh---hc----CCcEEEEeccc-ch
Q psy16304 386 SHSLSGRPDDRCQVYL---MS----CNCQVYLISAK-NL 416 (537)
Q Consensus 386 vdshd~~~~~~~~i~l---l~----~G~ii~~g~nk-dl 416 (537)
+|..+..++..+..|+ .. .+.++....|| |+
T Consensus 95 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl 133 (195)
T 1x3s_A 95 YDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDK 133 (195)
T ss_dssp EETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTS
T ss_pred EECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcC
Confidence 9999887776655332 11 35666677777 66
No 368
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=97.60 E-value=4.4e-05 Score=70.45 Aligned_cols=108 Identities=25% Similarity=0.359 Sum_probs=77.8
Q ss_pred CccEEEeccCccCccchhhhhcCCCc-eeeeccccccc--ceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEE
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR--ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLV 385 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~r-qrvs~ti~la~--all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlV 385 (537)
...+.++|..++||+++++.|.++.. ....++.+... ..+..++ ...+.+|||+|.+.+...+..+++..+++++|
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 101 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLM 101 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEEE
Confidence 35678999999999999999998873 33344445332 2222222 26889999999987777788888999999999
Q ss_pred EeCCCcchhhhhhhhhh---c---CCcEEEEeccc-chh
Q psy16304 386 SHSLSGRPDDRCQVYLM---S---CNCQVYLISAK-NLS 417 (537)
Q Consensus 386 vdshd~~~~~~~~i~ll---~---~G~ii~~g~nk-dl~ 417 (537)
+|..+..+++.+..|+. . .+.++....|| |+.
T Consensus 102 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 140 (189)
T 2gf9_A 102 YDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLE 140 (189)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 99998887776653321 1 36677777777 764
No 369
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=97.60 E-value=2.3e-05 Score=83.04 Aligned_cols=79 Identities=22% Similarity=0.284 Sum_probs=49.3
Q ss_pred CCeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeee----EEEEECCcEEEEEeecCCCchhhHH-------HHhhhhc
Q psy16304 196 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNR----ARVEYGNKYEVFLYDLGGSEDFRTI-------WKQYLGT 264 (537)
Q Consensus 196 G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~----~~i~i~g~~~i~~~D~~G~~~~r~~-------~~~~i~~ 264 (537)
-.+++|+|..|+|||||++.|++..++...+..|+|. ..+.+.+...+.+||++|+.++... +...+..
T Consensus 34 ~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~ 113 (423)
T 3qq5_A 34 RRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVFYR 113 (423)
T ss_dssp CEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHHTS
T ss_pred CEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHHhc
Confidence 4679999999999999999999986644445555433 3556665458999999998755322 1122222
Q ss_pred cccCCCCCCCccceeeEEeec
Q psy16304 265 VSQTPLGRPDSRTCQVYLIMC 285 (537)
Q Consensus 265 v~Q~~~l~~~~~~~il~v~Ds 285 (537)
++++++++|.
T Consensus 114 -----------aD~vllVvD~ 123 (423)
T 3qq5_A 114 -----------ADCGILVTDS 123 (423)
T ss_dssp -----------CSEEEEECSS
T ss_pred -----------CCEEEEEEeC
Confidence 8889999984
No 370
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=97.60 E-value=2.7e-05 Score=72.84 Aligned_cols=108 Identities=20% Similarity=0.285 Sum_probs=76.7
Q ss_pred CccEEEeccCccCccchhhhhcCCCc-eeeecccccc-cceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN-RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVS 386 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~r-qrvs~ti~la-~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVv 386 (537)
...+.++|..++||+++++.|.++.. ....++.+.. ...+..++ ...+.+|||+|.+.+..+|..+++..+++++|+
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 103 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVY 103 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEE
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEEEEE
Confidence 45678999999999999999998873 3333444422 22222121 267889999999888878888999999999999
Q ss_pred eCCCcchhhhhhhhhh---c----CCcEEEEeccc-chh
Q psy16304 387 HSLSGRPDDRCQVYLM---S----CNCQVYLISAK-NLS 417 (537)
Q Consensus 387 dshd~~~~~~~~i~ll---~----~G~ii~~g~nk-dl~ 417 (537)
|..+..+++.+..|+. . .+.++...+|| |+.
T Consensus 104 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 142 (201)
T 3oes_A 104 SVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLS 142 (201)
T ss_dssp ETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCG
T ss_pred eCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCc
Confidence 9999888876663322 1 25567777777 764
No 371
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=97.60 E-value=7.9e-05 Score=81.55 Aligned_cols=28 Identities=29% Similarity=0.403 Sum_probs=24.8
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCCc
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPII 222 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~ 222 (537)
.-.+|+|+|..|||||||+|.|.|..++
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~ 91 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVP 91 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccc
Confidence 4568999999999999999999998653
No 372
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.58 E-value=7.7e-05 Score=68.75 Aligned_cols=106 Identities=17% Similarity=0.364 Sum_probs=71.3
Q ss_pred ccEEEeccCccCccchhhhhcCCCc---eeeecccccccc--eecc-----CCceEEEEEecCchhhHHHHHHHHHhcCC
Q psy16304 311 VPILVLGLDNAGKSSIIKRILGEPI---ISLVPTVGFNRA--RVEY-----GNKYEVFLYDLGGSEDFRTIWKQYLGTVS 380 (537)
Q Consensus 311 ~~L~llGl~~~gKs~li~~LSgG~r---qrvs~ti~la~a--ll~~-----~e~p~lllLDT~Gl~~~~~l~~~~~~~~~ 380 (537)
..+.++|.+++||+++++.|.++.. ....+|++.... .+.. .. ..+.+|||+|++.+..++..+++..+
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRD-LVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC----------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCc-eEEEEEecCCCHHHHHhhHHHccCCc
Confidence 4578999999999999999998742 223445443321 1111 12 68899999999888888888888888
Q ss_pred EEEEEEeCCCc-chhhhhhhhhhc-----CCcEEEEeccc-chh
Q psy16304 381 QTLLVSHSLSG-RPDDRCQVYLMS-----CNCQVYLISAK-NLS 417 (537)
Q Consensus 381 ~vIlVvdshd~-~~~~~~~i~ll~-----~G~ii~~g~nk-dl~ 417 (537)
++++|+|..+. .+++.+..|+.+ .+.++...+|+ |+.
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 125 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVS 125 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGC
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcc
Confidence 99999988876 355555544322 46777777787 773
No 373
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.58 E-value=2.8e-05 Score=75.67 Aligned_cols=31 Identities=26% Similarity=0.457 Sum_probs=28.7
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHh---CCCCccccCcee
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRIL---GEPIISLVPTVG 229 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~---G~~~~~~~Pt~G 229 (537)
++++++|+|+||||||||+++|+ |. ..++.|
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~----~~~~~G 59 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGL----QHLSSG 59 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCC----CCEEHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCC----eEecHH
Confidence 47899999999999999999999 98 778888
No 374
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=97.58 E-value=4.3e-05 Score=72.83 Aligned_cols=108 Identities=23% Similarity=0.383 Sum_probs=74.2
Q ss_pred CccEEEeccCccCccchhhhhcCCCce-eeecccccc--cceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEE
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEPII-SLVPTVGFN--RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLV 385 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~rq-rvs~ti~la--~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlV 385 (537)
...+.++|..++||+++++.|.++... ...++.+.. ...+..++ ...+.+|||+|.+.+..+|..+++..+++++|
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV 92 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIV 92 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEE
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEEEE
Confidence 356789999999999999999988733 333444432 22233232 25789999999988888888889999999999
Q ss_pred EeCCCcchhhhhhhhhh------cCCcEEEEeccc-chh
Q psy16304 386 SHSLSGRPDDRCQVYLM------SCNCQVYLISAK-NLS 417 (537)
Q Consensus 386 vdshd~~~~~~~~i~ll------~~G~ii~~g~nk-dl~ 417 (537)
+|..+..+++.+..|+. ..+.++....|| |+.
T Consensus 93 ~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~ 131 (223)
T 3cpj_B 93 YDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLA 131 (223)
T ss_dssp EC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGG
T ss_pred EeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 99999888776653331 235677777777 774
No 375
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=97.57 E-value=5.9e-05 Score=70.27 Aligned_cols=105 Identities=17% Similarity=0.175 Sum_probs=71.6
Q ss_pred CCccEEEeccCccCccchhhhhcCCCceeeecccc--cccceec-----cCCceEEEEEecCchhhHHHH-H--HHHHhc
Q psy16304 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG--FNRARVE-----YGNKYEVFLYDLGGSEDFRTI-W--KQYLGT 378 (537)
Q Consensus 309 ~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~--la~all~-----~~e~p~lllLDT~Gl~~~~~l-~--~~~~~~ 378 (537)
....+.++|..++||+++++.+.+..... ++.+ .....+. ... ..+.+|||+|.+.+... | ..+++.
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 95 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHKMSPN--ETLFLESTNKIYKDDISNSSF-VNFQIWDFPGQMDFFDPTFDYEMIFRG 95 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSCCCGG--GGGGCCCCCSCEEEEECCTTS-CCEEEEECCSSCCTTCTTCCHHHHHHT
T ss_pred cceEEEEECCCCCCHHHHHHHHHhcCCCc--ceeeeccccceeeeeccCCCe-eEEEEEECCCCHHHHhhhhhccccccc
Confidence 35678899999999999999888765322 2222 2222221 122 68999999999775444 4 889999
Q ss_pred CCEEEEEEeCCCc--chhhhhhhhhhc-----CCcEEEEeccc-ch
Q psy16304 379 VSQTLLVSHSLSG--RPDDRCQVYLMS-----CNCQVYLISAK-NL 416 (537)
Q Consensus 379 ~~~vIlVvdshd~--~~~~~~~i~ll~-----~G~ii~~g~nk-dl 416 (537)
++++++|+|.++. ..+.....|+.+ .+.++...+|| |+
T Consensus 96 ~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl 141 (196)
T 3llu_A 96 TGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDG 141 (196)
T ss_dssp CSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGG
T ss_pred CCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEecccc
Confidence 9999999999987 333333333332 46677778888 76
No 376
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=97.56 E-value=7.1e-05 Score=68.41 Aligned_cols=107 Identities=21% Similarity=0.301 Sum_probs=72.8
Q ss_pred ccEEEeccCccCccchhhhhcCCCc-eeeecccc-cccceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEe
Q psy16304 311 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG-FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSH 387 (537)
Q Consensus 311 ~~L~llGl~~~gKs~li~~LSgG~r-qrvs~ti~-la~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvd 387 (537)
..+.++|..++||+++++.|.++.. ....++.. .....+..++ ...+.+|||+|.+.+..++..+++..+++++|++
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d 84 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFA 84 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEE
Confidence 4578999999999999999998772 22323332 1122222233 2457789999999888899999999999999999
Q ss_pred CCCcchhhhhhhhh---h----cCCcEEEEeccc-chh
Q psy16304 388 SLSGRPDDRCQVYL---M----SCNCQVYLISAK-NLS 417 (537)
Q Consensus 388 shd~~~~~~~~i~l---l----~~G~ii~~g~nk-dl~ 417 (537)
..+..+++....|+ . ..+.++....|+ |+.
T Consensus 85 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 122 (189)
T 4dsu_A 85 INNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP 122 (189)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSS
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCc
Confidence 99987776655222 1 135667777777 763
No 377
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=97.55 E-value=2.4e-05 Score=73.01 Aligned_cols=107 Identities=22% Similarity=0.387 Sum_probs=74.0
Q ss_pred CccEEEeccCccCccchhhhhcCCCc-eeeeccccc--ccceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEE
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGF--NRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLV 385 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~r-qrvs~ti~l--a~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlV 385 (537)
...+.++|..++||+++++.|.++.. ....++.+. ....+..++ ...+.+|||+|.+.+..+|..+++..+++++|
T Consensus 33 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 112 (199)
T 3l0i_B 33 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVV 112 (199)
T ss_dssp EEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEEEC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEE
Confidence 35678999999999999999998773 222333332 222232232 25788999999988777888888999999999
Q ss_pred EeCCCcchhhhhhhhh--h-c---CCcEEEEeccc-ch
Q psy16304 386 SHSLSGRPDDRCQVYL--M-S---CNCQVYLISAK-NL 416 (537)
Q Consensus 386 vdshd~~~~~~~~i~l--l-~---~G~ii~~g~nk-dl 416 (537)
+|..+..+++.+..|+ + . .+.++....|| |+
T Consensus 113 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl 150 (199)
T 3l0i_B 113 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 150 (199)
T ss_dssp C-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSC
T ss_pred EECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccC
Confidence 9999988877766433 1 1 36677777888 76
No 378
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.55 E-value=3.1e-05 Score=71.79 Aligned_cols=25 Identities=16% Similarity=0.405 Sum_probs=23.9
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGE 219 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~ 219 (537)
+|..++|+||||||||||+++|.+.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999999999986
No 379
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=97.55 E-value=0.00013 Score=79.48 Aligned_cols=79 Identities=23% Similarity=0.304 Sum_probs=53.7
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCC--C----------------c---cccCceeeee----EEEEECCcEEEEEeecC
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEP--I----------------I---SLVPTVGFNR----ARVEYGNKYEVFLYDLG 249 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~--~----------------~---~~~Pt~G~t~----~~i~i~g~~~i~~~D~~ 249 (537)
+..+++|+|..|||||||++.|++.. . . ...++.|++. ..+.+.+ ..+.+||++
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~-~~i~liDTP 90 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHD-CLVNLLDTP 90 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETT-EEEEEECCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECC-eEEEEEECC
Confidence 45679999999999999999998521 0 0 0112334332 2344554 999999999
Q ss_pred CCchhhHHHHhhhhccccCCCCCCCccceeeEEeec
Q psy16304 250 GSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMC 285 (537)
Q Consensus 250 G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds 285 (537)
|+.++...+...+.. ++++++++|+
T Consensus 91 G~~df~~~~~~~l~~-----------aD~~IlVvDa 115 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTA-----------VDCCLMVIDA 115 (529)
T ss_dssp CSTTCCHHHHHGGGG-----------CSEEEEEEET
T ss_pred CChhHHHHHHHHHHH-----------CCEEEEEEeC
Confidence 998877666666655 8999999993
No 380
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=97.55 E-value=0.00013 Score=67.13 Aligned_cols=106 Identities=23% Similarity=0.343 Sum_probs=75.2
Q ss_pred CccEEEeccCccCccchhhhhcCCCc-eeeeccccc--ccceeccCC-c-------------------------------
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGF--NRARVEYGN-K------------------------------- 354 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~r-qrvs~ti~l--a~all~~~e-~------------------------------- 354 (537)
...+.++|..++||+++++.|.++.. ....++.+. ....+..++ .
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNNY 86 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------CC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccccc
Confidence 45678999999999999999998862 233333331 111121121 1
Q ss_pred ------eEEEEEecCchhhHHHHHHHHHhcCCEEEEEEeCCCcchhhhhhhhhh----cCCcEEEEeccc-c
Q psy16304 355 ------YEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSHSLSGRPDDRCQVYLM----SCNCQVYLISAK-N 415 (537)
Q Consensus 355 ------p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvdshd~~~~~~~~i~ll----~~G~ii~~g~nk-d 415 (537)
..+.+|||+|.+.+...+..+++..+++++|+|..+..++.....|+. ..+.++....|| |
T Consensus 87 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D 158 (208)
T 3clv_A 87 NENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKID 158 (208)
T ss_dssp CTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTT
T ss_pred cCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCC
Confidence 578899999998888888999999999999999999877766553322 245677777777 5
No 381
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.53 E-value=3.7e-05 Score=78.99 Aligned_cols=29 Identities=21% Similarity=0.170 Sum_probs=25.3
Q ss_pred cccCCCCCeEEEEeCCCCcHHHHHHHHhC
Q psy16304 190 SLFDFRSVPILVLGLDNAGKSSIIKRILG 218 (537)
Q Consensus 190 ~l~~~~G~~vgLVG~NGAGKSTLL~~L~G 218 (537)
++...++.+++++|+||||||||++.|++
T Consensus 50 ~~~~~~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 50 MPYCGNTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp GGGCSCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred CcccCCCEEEEEEcCCCCCHHHHHHHHHH
Confidence 34456899999999999999999999975
No 382
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=97.53 E-value=5.5e-05 Score=67.76 Aligned_cols=106 Identities=25% Similarity=0.428 Sum_probs=73.3
Q ss_pred ccEEEeccCccCccchhhhhcCCCc-eeeecccccc--cceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304 311 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN--RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVS 386 (537)
Q Consensus 311 ~~L~llGl~~~gKs~li~~LSgG~r-qrvs~ti~la--~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVv 386 (537)
..+.++|..++||+++++.|.++.. ....++.+.. ...+..++ ...+.+|||+|.+.+...+..+++..+++++|+
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 83 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVY 83 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEE
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEEEE
Confidence 3577999999999999999998873 3333444422 22232232 257889999999888888888999999999999
Q ss_pred eCCCcchhhhhhhhhh------cCCcEEEEeccc-ch
Q psy16304 387 HSLSGRPDDRCQVYLM------SCNCQVYLISAK-NL 416 (537)
Q Consensus 387 dshd~~~~~~~~i~ll------~~G~ii~~g~nk-dl 416 (537)
|..+..+++.+..|+. ..+.++....|| |+
T Consensus 84 d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl 120 (170)
T 1g16_A 84 DITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 120 (170)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccC
Confidence 9998877766553321 136677777777 66
No 383
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=97.52 E-value=6.3e-05 Score=78.24 Aligned_cols=72 Identities=10% Similarity=0.078 Sum_probs=52.0
Q ss_pred eEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccc
Q psy16304 198 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRT 277 (537)
Q Consensus 198 ~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~ 277 (537)
.++++|..++|||||++.|+ . ...|.+.....+...+ ..+.+||++|++++...+...+.. ++
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~-~----~giTi~~~~~~~~~~~-~~i~iiDtPGh~~f~~~~~~~~~~-----------aD 85 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG-K----KGTSSDITMYNNDKEG-RNMVFVDAHSYPKTLKSLITALNI-----------SD 85 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS-E----EEEESSSEEEEECSSS-SEEEEEECTTTTTCHHHHHHHHHT-----------CS
T ss_pred EEEEECCCCCCHHHHHHHHH-h----CCEEEEeeEEEEecCC-eEEEEEECCChHHHHHHHHHHHHH-----------CC
Confidence 79999999999999999998 1 2222222222344444 789999999999876555455554 88
Q ss_pred eeeEEeecCc
Q psy16304 278 CQVYLIMCGV 287 (537)
Q Consensus 278 ~il~v~Ds~~ 287 (537)
.+++++| +.
T Consensus 86 ~ailVvd-~~ 94 (370)
T 2elf_A 86 IAVLCIP-PQ 94 (370)
T ss_dssp EEEEEEC-TT
T ss_pred EEEEEEc-CC
Confidence 9999999 44
No 384
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=97.52 E-value=7.8e-05 Score=69.05 Aligned_cols=108 Identities=21% Similarity=0.293 Sum_probs=78.3
Q ss_pred CccEEEeccCccCccchhhhhcCCCc-eeeeccccccc-ceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVS 386 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~r-qrvs~ti~la~-all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVv 386 (537)
...+.++|..++||+++++.|.++.. ....+|.+... ..+..++ ...+.+|||+|.+.+..++..+++..+++++|+
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 102 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCF 102 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEEEEE
Confidence 45688999999999999999998873 33344444221 1222232 256789999999988888899999999999999
Q ss_pred eCCCcchhhhh-hhhh--h---cCCcEEEEeccc-chh
Q psy16304 387 HSLSGRPDDRC-QVYL--M---SCNCQVYLISAK-NLS 417 (537)
Q Consensus 387 dshd~~~~~~~-~i~l--l---~~G~ii~~g~nk-dl~ 417 (537)
|..+..+++.+ ..|+ + ..+.++...+|| |+.
T Consensus 103 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 140 (194)
T 3reg_A 103 AVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLR 140 (194)
T ss_dssp ETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGC
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhc
Confidence 99999888775 3222 1 135677777777 763
No 385
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=97.52 E-value=0.00015 Score=66.99 Aligned_cols=103 Identities=17% Similarity=0.293 Sum_probs=72.4
Q ss_pred CCccEEEeccCccCccchhhhhcCCC-ceeeecccccccceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304 309 RSVPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVS 386 (537)
Q Consensus 309 ~~~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVv 386 (537)
....+.++|..++||+++++.|.++. .....+|.+.....+..++ ...+.+|||+|++.+. +++..+++++|+
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~v~ 93 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVF 93 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEEEEE
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEEEEE
Confidence 34678899999999999999999887 3334444332223333343 2567789999997665 677789999999
Q ss_pred eCCCcchhhhhhhhhh---c----CCcEEEEeccc-ch
Q psy16304 387 HSLSGRPDDRCQVYLM---S----CNCQVYLISAK-NL 416 (537)
Q Consensus 387 dshd~~~~~~~~i~ll---~----~G~ii~~g~nk-dl 416 (537)
|..+..+++.+..|+. . .+.++...+|| |+
T Consensus 94 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 131 (184)
T 3ihw_A 94 SLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAI 131 (184)
T ss_dssp ETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTC
T ss_pred ECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 9999988877653332 1 24566667777 66
No 386
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=97.52 E-value=0.00019 Score=65.84 Aligned_cols=105 Identities=18% Similarity=0.253 Sum_probs=75.3
Q ss_pred CccEEEeccCccCccchhhhhcCCCceeeeccccccccee--ccCCceEEEEEecCc----------hhhHHHHHHHHHh
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARV--EYGNKYEVFLYDLGG----------SEDFRTIWKQYLG 377 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all--~~~e~p~lllLDT~G----------l~~~~~l~~~~~~ 377 (537)
...+.++|..++||+++++.|.++......++.+.+.... ..+ ..+.+|||+| .+.+..+++.+++
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 100 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVN--SKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFK 100 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEET--TTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEEC--CcEEEEECCCCccccCChhhHHHHHHHHHHHHh
Confidence 4568899999999999999999998666666666444332 223 4788999999 5667777888877
Q ss_pred cC---CEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEeccc-ch
Q psy16304 378 TV---SQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAK-NL 416 (537)
Q Consensus 378 ~~---~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nk-dl 416 (537)
.. +.+++|+|..+........ .++...+.++....|| |+
T Consensus 101 ~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl 145 (195)
T 3pqc_A 101 NRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDK 145 (195)
T ss_dssp HCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred cCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhc
Confidence 65 6788889876654433322 4555567777777777 76
No 387
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=97.51 E-value=7.9e-05 Score=70.59 Aligned_cols=108 Identities=19% Similarity=0.268 Sum_probs=60.6
Q ss_pred CccEEEeccCccCccchhhhhcCCCc-eeeecccccc-cceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN-RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVS 386 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~r-qrvs~ti~la-~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVv 386 (537)
...+.++|..++||+++++.|.++.. ....+|.... ...+..++ ...+.+|||+|.+.+..++..+++..+++++|+
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 113 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCF 113 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEEEEE
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEEEE
Confidence 45688999999999999999998872 2333333311 11222232 257889999999988889999999999999999
Q ss_pred eCCCcchhhhhh-hhhh-----cCCcEEEEeccc-chh
Q psy16304 387 HSLSGRPDDRCQ-VYLM-----SCNCQVYLISAK-NLS 417 (537)
Q Consensus 387 dshd~~~~~~~~-i~ll-----~~G~ii~~g~nk-dl~ 417 (537)
|..+..+++.+. .|+. ..+.++...+|| |+.
T Consensus 114 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 151 (214)
T 2j1l_A 114 DVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLR 151 (214)
T ss_dssp ETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGG
T ss_pred ECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhh
Confidence 999988877664 3322 135667777777 763
No 388
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=97.51 E-value=0.00015 Score=81.36 Aligned_cols=77 Identities=17% Similarity=0.141 Sum_probs=55.0
Q ss_pred CCeEEEEeCCCCcHHHHHHHHh---CCCC-----------c-------cccCceeeeeEEEEECCcEEEEEeecCCCchh
Q psy16304 196 SVPILVLGLDNAGKSSIIKRIL---GEPI-----------I-------SLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 254 (537)
Q Consensus 196 G~~vgLVG~NGAGKSTLL~~L~---G~~~-----------~-------~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~ 254 (537)
-.+++|+|..|+|||||++.|. |... . ...+|.+.....+.+.+ ..+.+||++|+.++
T Consensus 12 ~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~-~~i~liDTPG~~df 90 (691)
T 1dar_A 12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD-HRINIIDTPGHVDF 90 (691)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETT-EEEEEECCCSSTTC
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECC-eEEEEEECcCccch
Confidence 3579999999999999999997 2200 0 01223333334555665 99999999999988
Q ss_pred hHHHHhhhhccccCCCCCCCccceeeEEee
Q psy16304 255 RTIWKQYLGTVSQTPLGRPDSRTCQVYLIM 284 (537)
Q Consensus 255 r~~~~~~i~~v~Q~~~l~~~~~~~il~v~D 284 (537)
...+...+.. ++++++++|
T Consensus 91 ~~~~~~~l~~-----------aD~~ilVvD 109 (691)
T 1dar_A 91 TIEVERSMRV-----------LDGAIVVFD 109 (691)
T ss_dssp HHHHHHHHHH-----------CSEEEEEEE
T ss_pred HHHHHHHHHH-----------CCEEEEEEE
Confidence 8777777776 899999999
No 389
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=97.50 E-value=6.3e-05 Score=69.14 Aligned_cols=108 Identities=21% Similarity=0.284 Sum_probs=77.0
Q ss_pred CccEEEeccCccCccchhhhhcCCCc-eeeeccccccc-ceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVS 386 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~r-qrvs~ti~la~-all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVv 386 (537)
...+.++|.+++||+++++.|.++.. ....+|.+... ..+..++ ...+.+|||+|.+.+..++..+++..+++++|+
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~ 86 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICF 86 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEEEE
Confidence 35678999999999999999998863 23334444221 1122222 367889999999888778888888999999999
Q ss_pred eCCCcchhhhh-hhhh--h---cCCcEEEEeccc-chh
Q psy16304 387 HSLSGRPDDRC-QVYL--M---SCNCQVYLISAK-NLS 417 (537)
Q Consensus 387 dshd~~~~~~~-~i~l--l---~~G~ii~~g~nk-dl~ 417 (537)
|..+..+++.+ ..|+ + ..+.++...+|| |+.
T Consensus 87 d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 124 (184)
T 1m7b_A 87 DISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 124 (184)
T ss_dssp ETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGG
T ss_pred ECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhh
Confidence 99998887766 3332 1 146677777777 764
No 390
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=97.50 E-value=0.00011 Score=76.90 Aligned_cols=80 Identities=15% Similarity=0.115 Sum_probs=53.6
Q ss_pred CCeEEEEeCCCCcHHHHHHHHhCCC-------Ccc--------ccCceeeeeEE--EEEC-CcEEEEEeecCCCchhhHH
Q psy16304 196 SVPILVLGLDNAGKSSIIKRILGEP-------IIS--------LVPTVGFNRAR--VEYG-NKYEVFLYDLGGSEDFRTI 257 (537)
Q Consensus 196 G~~vgLVG~NGAGKSTLL~~L~G~~-------~~~--------~~Pt~G~t~~~--i~i~-g~~~i~~~D~~G~~~~r~~ 257 (537)
..+++++|..|+|||||++.|++.. +.. .....|+|.+. +.+. ++..+.+||++|++++...
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~ 82 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKN 82 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHHH
Confidence 4579999999999999999998731 100 01133443322 2222 2488999999999887654
Q ss_pred HHhhhhccccCCCCCCCccceeeEEeecC
Q psy16304 258 WKQYLGTVSQTPLGRPDSRTCQVYLIMCG 286 (537)
Q Consensus 258 ~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~ 286 (537)
+...+.. ++.+++++|+.
T Consensus 83 ~~~~~~~-----------aD~~ilVvda~ 100 (397)
T 1d2e_A 83 MITGTAP-----------LDGCILVVAAN 100 (397)
T ss_dssp HHHTSSC-----------CSEEEEEEETT
T ss_pred HHhhHhh-----------CCEEEEEEECC
Confidence 4444443 89999999943
No 391
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=97.49 E-value=0.00022 Score=63.22 Aligned_cols=105 Identities=21% Similarity=0.265 Sum_probs=68.6
Q ss_pred cEEEeccCccCccchhhhhcCCCceeeeccccc----ccceeccCCceEEEEEecCchhh-------HHHHHHHHHhcCC
Q psy16304 312 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGF----NRARVEYGNKYEVFLYDLGGSED-------FRTIWKQYLGTVS 380 (537)
Q Consensus 312 ~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~l----a~all~~~e~p~lllLDT~Gl~~-------~~~l~~~~~~~~~ 380 (537)
.+.++|..++||+++++.|.++......+..+. ....+..++ ..+.+|||+|... ....+..+++..+
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDR-GRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAE 81 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETT-EEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCC-ceEEEEECCCCCCccchHHHHHHHHHHHHHhCC
Confidence 467899999999999999998874333222222 222333344 6899999999865 5667778888999
Q ss_pred EEEEEEeCCCcchhhhh--hhhhhcCCcEEEEeccc-chh
Q psy16304 381 QTLLVSHSLSGRPDDRC--QVYLMSCNCQVYLISAK-NLS 417 (537)
Q Consensus 381 ~vIlVvdshd~~~~~~~--~i~ll~~G~ii~~g~nk-dl~ 417 (537)
++++|+|.++....... ..++...+.++...+|| |+.
T Consensus 82 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 121 (161)
T 2dyk_A 82 VVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDP 121 (161)
T ss_dssp EEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSG
T ss_pred EEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccc
Confidence 99999998875433222 23333445666666776 763
No 392
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=97.49 E-value=0.00011 Score=75.40 Aligned_cols=110 Identities=16% Similarity=0.342 Sum_probs=0.0
Q ss_pred CCCCeEEEEeCCCCcHHHH---HHHHhCCCCcc-----------------------------------------------
Q psy16304 194 FRSVPILVLGLDNAGKSSI---IKRILGEPIIS----------------------------------------------- 223 (537)
Q Consensus 194 ~~G~~vgLVG~NGAGKSTL---L~~L~G~~~~~----------------------------------------------- 223 (537)
.+..++.|+|..+|||||+ +++|-+..|+.
T Consensus 3 ~~~~klLLLG~geSGKSTi~KQmkii~~~gfs~~e~~~~~~~i~~N~~~~~~~li~~~~~l~i~~~~~~~~~~~~~~~~~ 82 (340)
T 4fid_A 3 AKPITVMLLGSGESGKSTIAKQLKILFGGGFPEQERATHKSSICSNVVTCMRTLIEQSAILNHPMKYQPKSKEFTTEDPV 82 (340)
T ss_dssp -CCEEEEEEECTTSSHHHHHHHHHHHTSCCCCHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTCCCSCCCCSGGGSCCSCC
T ss_pred CCcceEEEECCCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCCCChhhHHHHhhcccC
Q ss_pred --------------------------------------------------------------ccCceeeeeEEEEECCcE
Q psy16304 224 --------------------------------------------------------------LVPTVGFNRARVEYGNKY 241 (537)
Q Consensus 224 --------------------------------------------------------------~~Pt~G~t~~~i~i~g~~ 241 (537)
..||.|+....+.+.+ +
T Consensus 83 ~~~~~~~~~~~i~~lW~d~~iq~~~~r~~e~~l~d~~~yfl~~l~Ri~~~~Y~PT~~Dil~~~~~TiGi~~~~~~~~~-v 161 (340)
T 4fid_A 83 TLPFSPELVGDVEALWADEGIQATYEESAKFQLPDCAKYLFENVKRIAMEDYVPTEEDLIHNRTKTTGIHEYDFVVKD-I 161 (340)
T ss_dssp CSSCCTTHHHHHHHHHHSHHHHHHHHTCTTSCCCTTHHHHHHTHHHHSSTTCCCCHHHHHHSCCCCCSCEEEEEESSS-C
T ss_pred CCCCCHHHHHHHHHHHcCHHHHHHHHhcccccccchhhhHHHHHHHHhcccCCccccceeecccceeeeEEEEEEeee-e
Q ss_pred EEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEee-c----------CcccccCCcccccccCcCCccccCC
Q psy16304 242 EVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIM-C----------GVHQVSGIPDELTSATHLPLVDFRS 310 (537)
Q Consensus 242 ~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~D-s----------~~~~~~~l~~~l~~~~~l~~~~~~~ 310 (537)
.+.+||++|++.+|..|..++.. ++++++|+| + +..++.+...++..+-.........
T Consensus 162 ~l~iwDtaGQe~~R~~w~~yy~~-----------a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~p 230 (340)
T 4fid_A 162 PFHLIDVGGQRSERKXWVSFFSD-----------VDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAV 230 (340)
T ss_dssp EEEEEECCSCHHHHHHHHTTSCS-----------CSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSE
T ss_pred eeccccCCCcccccccHHHHhcc-----------CCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCe
Q ss_pred ccEEE
Q psy16304 311 VPILV 315 (537)
Q Consensus 311 ~~L~l 315 (537)
..+..
T Consensus 231 iiLv~ 235 (340)
T 4fid_A 231 KLIFL 235 (340)
T ss_dssp EEEEE
T ss_pred EEEEE
No 393
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.49 E-value=0.0001 Score=69.04 Aligned_cols=107 Identities=25% Similarity=0.424 Sum_probs=77.0
Q ss_pred CccEEEeccCccCccchhhhhcCCCc-eeeecccccc--cceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEE
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN--RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLV 385 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~r-qrvs~ti~la--~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlV 385 (537)
...+.++|..++||+++++.|.++.. ....++.+.. ...+..++ ...+.+|||+|.+.+...|..+++..+++++|
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 99 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILV 99 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEE
Confidence 45678999999999999999998763 3333444422 22232232 25789999999988888889999999999999
Q ss_pred EeCCCcchhhhhhhhhh------cCCcEEEEeccc-ch
Q psy16304 386 SHSLSGRPDDRCQVYLM------SCNCQVYLISAK-NL 416 (537)
Q Consensus 386 vdshd~~~~~~~~i~ll------~~G~ii~~g~nk-dl 416 (537)
+|..+..+++.+..|+. ..+.++....|| |+
T Consensus 100 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl 137 (213)
T 3cph_A 100 YDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 137 (213)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTC
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC
Confidence 99998877766553321 135667777777 76
No 394
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.48 E-value=0.00016 Score=74.84 Aligned_cols=55 Identities=24% Similarity=0.347 Sum_probs=31.9
Q ss_pred CeEEEEeCCCCcHHHHHHHHhCCCC--ccc--------cCceeeeeEEEEE--CC-cEEEEEeecCCC
Q psy16304 197 VPILVLGLDNAGKSSIIKRILGEPI--ISL--------VPTVGFNRARVEY--GN-KYEVFLYDLGGS 251 (537)
Q Consensus 197 ~~vgLVG~NGAGKSTLL~~L~G~~~--~~~--------~Pt~G~t~~~i~i--~g-~~~i~~~D~~G~ 251 (537)
.+++|+|++|+|||||++.|.+... ... .++.++....+.+ ++ ...+.+||++|+
T Consensus 38 ~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~ 105 (361)
T 2qag_A 38 FTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGY 105 (361)
T ss_dssp ECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC----
T ss_pred EEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccc
Confidence 4589999999999999999987632 111 1454433333322 23 247899999998
No 395
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=97.48 E-value=0.00014 Score=76.22 Aligned_cols=81 Identities=15% Similarity=0.149 Sum_probs=56.0
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCC--------CCccc--------cCceeeeeE--EEEEC-CcEEEEEeecCCCchhh
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGE--------PIISL--------VPTVGFNRA--RVEYG-NKYEVFLYDLGGSEDFR 255 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~--------~~~~~--------~Pt~G~t~~--~i~i~-g~~~i~~~D~~G~~~~r 255 (537)
+..+++++|..|+|||||++.|++. .+..+ ..+.|+|.+ .+.+. ++..+.+||++|++++.
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f~ 89 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYI 89 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGH
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHHH
Confidence 4567999999999999999999872 11111 113443332 22232 24889999999999887
Q ss_pred HHHHhhhhccccCCCCCCCccceeeEEeecC
Q psy16304 256 TIWKQYLGTVSQTPLGRPDSRTCQVYLIMCG 286 (537)
Q Consensus 256 ~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~ 286 (537)
..+...+.. ++.+++++|+.
T Consensus 90 ~~~~~~~~~-----------aD~~ilVvda~ 109 (405)
T 2c78_A 90 KNMITGAAQ-----------MDGAILVVSAA 109 (405)
T ss_dssp HHHHHHHTT-----------CSSEEEEEETT
T ss_pred HHHHHHHHH-----------CCEEEEEEECC
Confidence 655555554 89999999943
No 396
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=97.47 E-value=7e-05 Score=69.70 Aligned_cols=108 Identities=18% Similarity=0.236 Sum_probs=73.8
Q ss_pred CccEEEeccCccCccchhhhhcCCC-ceeeecccccc-cceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFN-RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVS 386 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la-~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVv 386 (537)
...+.++|..++||+++++.|.++. .....+|.+.. ...+..++ ...+.+|||+|.+.+..+|..+++..+++++|+
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~ 99 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCF 99 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEEEE
Confidence 4568899999999999999999887 33333444321 11222233 246779999999887778888889999999999
Q ss_pred eCCCcchhhhhh-hhh--hc---CCcEEEEeccc-chh
Q psy16304 387 HSLSGRPDDRCQ-VYL--MS---CNCQVYLISAK-NLS 417 (537)
Q Consensus 387 dshd~~~~~~~~-i~l--l~---~G~ii~~g~nk-dl~ 417 (537)
|..+..+++.+. .|+ +. .+.++...+|| |+.
T Consensus 100 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 137 (201)
T 2q3h_A 100 SVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLR 137 (201)
T ss_dssp ETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGG
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhh
Confidence 999988877664 333 11 36667777777 763
No 397
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.47 E-value=3.1e-05 Score=80.59 Aligned_cols=33 Identities=27% Similarity=0.261 Sum_probs=30.6
Q ss_pred CCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCc-ee
Q psy16304 193 DFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPT-VG 229 (537)
Q Consensus 193 ~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt-~G 229 (537)
+.+|+.++|+||||||||||++.|+|. +.|+ .|
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~----~~~~~~g 166 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDY----INQTKSY 166 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHH----HHHHSCC
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhh----cCcCCCc
Confidence 568999999999999999999999999 8887 78
No 398
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=97.47 E-value=7.1e-05 Score=70.71 Aligned_cols=109 Identities=21% Similarity=0.276 Sum_probs=77.7
Q ss_pred CCccEEEeccCccCccchhhhhcCCCc-eeeeccccccc-ceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEE
Q psy16304 309 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLV 385 (537)
Q Consensus 309 ~~~~L~llGl~~~gKs~li~~LSgG~r-qrvs~ti~la~-all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlV 385 (537)
....+.++|..++||+++++.|.++.. ....+|.+... ..+..++ ...+.+|||+|.+.+..++..+++.++++++|
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 106 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC 106 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEEE
Confidence 345688999999999999999998863 22234444221 1222232 36789999999988888888888899999999
Q ss_pred EeCCCcchhhhh-hhhh--hc---CCcEEEEeccc-chh
Q psy16304 386 SHSLSGRPDDRC-QVYL--MS---CNCQVYLISAK-NLS 417 (537)
Q Consensus 386 vdshd~~~~~~~-~i~l--l~---~G~ii~~g~nk-dl~ 417 (537)
+|..+..+++.+ ..|+ +. .+.++...+|| |+.
T Consensus 107 ~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 145 (205)
T 1gwn_A 107 FDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 145 (205)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGG
T ss_pred EECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhc
Confidence 999998887766 3332 11 36677777777 763
No 399
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=97.47 E-value=0.0002 Score=77.10 Aligned_cols=79 Identities=14% Similarity=0.147 Sum_probs=54.0
Q ss_pred CCeEEEEeCCCCcHHHHHHHHhCCC----Cc--cccCceeee----eEEEEECCcEEEEEeecCCCchhhHHHHhhhhcc
Q psy16304 196 SVPILVLGLDNAGKSSIIKRILGEP----II--SLVPTVGFN----RARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTV 265 (537)
Q Consensus 196 G~~vgLVG~NGAGKSTLL~~L~G~~----~~--~~~Pt~G~t----~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v 265 (537)
..+++++|..|+|||||++.|+|.. .. ......|+| ...+.+++ ..+.+||++|++++...+...+..
T Consensus 19 ~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~-~~i~iiDtPGh~~~~~~~~~~~~~- 96 (482)
T 1wb1_A 19 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN-YRITLVDAPGHADLIRAVVSAADI- 96 (482)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT-EEEEECCCSSHHHHHHHHHHHTTS-
T ss_pred CCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC-EEEEEEECCChHHHHHHHHHHHhh-
Confidence 4679999999999999999999975 10 011222322 23455555 899999999998776555554444
Q ss_pred ccCCCCCCCccceeeEEeecC
Q psy16304 266 SQTPLGRPDSRTCQVYLIMCG 286 (537)
Q Consensus 266 ~Q~~~l~~~~~~~il~v~Ds~ 286 (537)
++.+++++|+.
T Consensus 97 ----------aD~~ilVvda~ 107 (482)
T 1wb1_A 97 ----------IDLALIVVDAK 107 (482)
T ss_dssp ----------CCEEEEEEETT
T ss_pred ----------CCEEEEEEecC
Confidence 89999999943
No 400
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=97.45 E-value=4.1e-05 Score=71.43 Aligned_cols=108 Identities=16% Similarity=0.257 Sum_probs=76.3
Q ss_pred CccEEEeccCccCccchhhhhcCCC-ceeeecccccc--cceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEE
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFN--RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLV 385 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la--~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlV 385 (537)
...+.++|..++||+++++.|.++. .....++.+.. ...+..++ ...+.+|||+|.+.+..+|..+++..+++++|
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 87 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEE
Confidence 3567899999999999999999887 33333444422 22222222 25789999999988777788888899999999
Q ss_pred EeCCCcchhhhhhhhhhc----------CCcEEEEeccc-chh
Q psy16304 386 SHSLSGRPDDRCQVYLMS----------CNCQVYLISAK-NLS 417 (537)
Q Consensus 386 vdshd~~~~~~~~i~ll~----------~G~ii~~g~nk-dl~ 417 (537)
+|..+..++..+..|+.. .+.++....|| |+.
T Consensus 88 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (207)
T 1vg8_A 88 FDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE 130 (207)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS
T ss_pred EECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc
Confidence 999988877665533221 35566666777 763
No 401
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=97.45 E-value=0.00014 Score=77.09 Aligned_cols=81 Identities=21% Similarity=0.256 Sum_probs=52.7
Q ss_pred CCeEEEEeCCCCcHHHHHHHHhCC--CCccc----------------------------cCceeeeeE----EEEECCcE
Q psy16304 196 SVPILVLGLDNAGKSSIIKRILGE--PIISL----------------------------VPTVGFNRA----RVEYGNKY 241 (537)
Q Consensus 196 G~~vgLVG~NGAGKSTLL~~L~G~--~~~~~----------------------------~Pt~G~t~~----~i~i~g~~ 241 (537)
..+++++|..|+|||||++.|++. .+... ....|+|.+ .+... +.
T Consensus 6 ~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~-~~ 84 (435)
T 1jny_A 6 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETK-KY 84 (435)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECS-SC
T ss_pred EEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecC-Ce
Confidence 457999999999999999999753 11000 001233322 23334 48
Q ss_pred EEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecCcc
Q psy16304 242 EVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVH 288 (537)
Q Consensus 242 ~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~~~ 288 (537)
.+.+||++|++++...+...+.. ++++++++|+...
T Consensus 85 ~~~iiDtpG~~~f~~~~~~~~~~-----------aD~~ilVvDa~~g 120 (435)
T 1jny_A 85 FFTIIDAPGHRDFVKNMITGASQ-----------ADAAILVVSAKKG 120 (435)
T ss_dssp EEEECCCSSSTTHHHHHHHTSSC-----------CSEEEEEEECSTT
T ss_pred EEEEEECCCcHHHHHHHHhhhhh-----------cCEEEEEEECCCC
Confidence 89999999999887655555444 8999999994333
No 402
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.45 E-value=5e-05 Score=74.47 Aligned_cols=32 Identities=25% Similarity=0.201 Sum_probs=29.5
Q ss_pred CCCCeEEEEeCCCCcHHHHHHHHh---CCCCccccCcee
Q psy16304 194 FRSVPILVLGLDNAGKSSIIKRIL---GEPIISLVPTVG 229 (537)
Q Consensus 194 ~~G~~vgLVG~NGAGKSTLL~~L~---G~~~~~~~Pt~G 229 (537)
.+|.+++|+|++||||||++++|+ |. ..++.|
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~----~~~d~g 59 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNW----RLLDSG 59 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTC----EEEEHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCC----CcCCCC
Confidence 478999999999999999999999 98 778888
No 403
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=97.45 E-value=5.3e-05 Score=86.50 Aligned_cols=98 Identities=15% Similarity=0.107 Sum_probs=71.1
Q ss_pred EEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCch--hhHHHHH---HHHHhcCCEEEEE
Q psy16304 313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGS--EDFRTIW---KQYLGTVSQTLLV 385 (537)
Q Consensus 313 L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl--~~~~~l~---~~~~~~~~~vIlV 385 (537)
+..+|+........+.+|||||+||+ .+|+++..... +.+++|| |+|+ .....++ +.+ +....+|++
T Consensus 363 L~~vGL~~l~l~r~~~tLSGGe~QRV----~LA~aL~~~p~-~~llILDEPT~~Ld~~~~~~L~~~l~~L-~~~G~TVIv 436 (842)
T 2vf7_A 363 LLHLGLGYLGLDRSTPTLSPGELQRL----RLATQLYSNLF-GVVYVLDEPSAGLHPADTEALLSALENL-KRGGNSLFV 436 (842)
T ss_dssp HHHTTCTTSBTTCBGGGSCHHHHHHH----HHHHHTTTCCC-SCEEEEECTTTTCCGGGHHHHHHHHHHH-HTTTCEEEE
T ss_pred HHhCCCCcCCccCCcCcCCHHHHHHH----HHHHHHhhCCC-CeEEEeeCccccCCHHHHHHHHHHHHHH-HHcCCEEEE
Confidence 34577765534566899999999999 99999986221 2699999 9999 2333333 344 444567888
Q ss_pred EeCCCcchhhhhh-hhhh------cCCcEEEEecccchh
Q psy16304 386 SHSLSGRPDDRCQ-VYLM------SCNCQVYLISAKNLS 417 (537)
Q Consensus 386 vdshd~~~~~~~~-i~ll------~~G~ii~~g~nkdl~ 417 (537)
+ +|+++.+..++ ++.| ++|+++..|++.++.
T Consensus 437 V-eHdl~~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~ 474 (842)
T 2vf7_A 437 V-EHDLDVIRRADWLVDVGPEAGEKGGEILYSGPPEGLK 474 (842)
T ss_dssp E-CCCHHHHTTCSEEEEECSSSGGGCCSEEEEECGGGGG
T ss_pred E-cCCHHHHHhCCEEEEeCCCcccCCCEEEEecCHHHHH
Confidence 8 89998776555 7777 689999999888764
No 404
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=97.44 E-value=1.1e-05 Score=87.87 Aligned_cols=81 Identities=11% Similarity=0.200 Sum_probs=53.6
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCCc-cccCcee--eeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCCCC
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPII-SLVPTVG--FNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLG 271 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~-~~~Pt~G--~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l 271 (537)
+..+|+++|..|+|||||++.|.+..+. ...|+.+ +....+.++++..+.+||++|++.+...+...+..
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~------- 75 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQV------- 75 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBS-------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHcc-------
Confidence 3467999999999999999999875431 1112111 11123334334688999999998776544433333
Q ss_pred CCCccceeeEEeecC
Q psy16304 272 RPDSRTCQVYLIMCG 286 (537)
Q Consensus 272 ~~~~~~~il~v~Ds~ 286 (537)
++.+++++|++
T Consensus 76 ----aD~vILVVDa~ 86 (537)
T 3izy_P 76 ----TDIVILVVAAD 86 (537)
T ss_dssp ----BSSCEEECBSS
T ss_pred ----CCEEEEEEECC
Confidence 88999999943
No 405
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=97.43 E-value=2.8e-05 Score=89.66 Aligned_cols=98 Identities=14% Similarity=0.077 Sum_probs=71.4
Q ss_pred EEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEe--cCchh--hHHHHH---HHHHhcCCEEEEE
Q psy16304 313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD--LGGSE--DFRTIW---KQYLGTVSQTLLV 385 (537)
Q Consensus 313 L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLD--T~Gl~--~~~~l~---~~~~~~~~~vIlV 385 (537)
+..+|+........+.+|||||+||+ ++|+++..... +.+++|| |+||+ ....++ +.+ +..+.+|||
T Consensus 505 L~~vGL~~l~l~r~~~tLSGGEkQRV----~LA~aL~~~~~-~~llILDEPTagLdp~~~~~L~~~L~~L-r~~G~TVIv 578 (993)
T 2ygr_A 505 LLDVGLEYLSLSRAAATLSGGEAQRI----RLATQIGSGLV-GVLYVLDEPSIGLHQRDNRRLIETLTRL-RDLGNTLIV 578 (993)
T ss_dssp HHHHTGGGSCTTCBGGGCCHHHHHHH----HHHHHHTTCCC-SCEEEEECTTTTCCHHHHHHHHHHHHHH-HHTTCEEEE
T ss_pred HhhCCCCccccCCCcccCCHHHHHHH----HHHHHHhhCCC-CcEEEEeCcccCCCHHHHHHHHHHHHHH-HHcCCEEEE
Confidence 44677765434556899999999999 99999886322 4899999 99993 223333 444 344567888
Q ss_pred EeCCCcchhhhhh-hhhh------cCCcEEEEecccchh
Q psy16304 386 SHSLSGRPDDRCQ-VYLM------SCNCQVYLISAKNLS 417 (537)
Q Consensus 386 vdshd~~~~~~~~-i~ll------~~G~ii~~g~nkdl~ 417 (537)
+ +||++.+..++ +++| ++|+++..|++.++.
T Consensus 579 V-eHdl~~i~~ADrIi~Lgp~aG~~gG~iv~~G~~~e~~ 616 (993)
T 2ygr_A 579 V-EHDEDTIEHADWIVDIGPGAGEHGGRIVHSGPYDELL 616 (993)
T ss_dssp E-CCCHHHHHTCSEEEEECSSSGGGCCSCCEEECHHHHH
T ss_pred E-CCCHHHHHhCCEEEEecCccccCCCEEEEeeCHHHhh
Confidence 8 89998876555 7777 689999999888764
No 406
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=97.43 E-value=0.00017 Score=77.54 Aligned_cols=79 Identities=20% Similarity=0.264 Sum_probs=54.9
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCCc------------------------------cccCceeeee----EEEEECCc
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPII------------------------------SLVPTVGFNR----ARVEYGNK 240 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~------------------------------~~~Pt~G~t~----~~i~i~g~ 240 (537)
+..+++++|..|+|||||++.|++.... ......|+|. ..+... +
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~-~ 110 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH-R 110 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS-S
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC-C
Confidence 4568999999999999999999653100 0011124332 123333 4
Q ss_pred EEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeec
Q psy16304 241 YEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMC 285 (537)
Q Consensus 241 ~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds 285 (537)
..+.+||++|++++...+...+.. ++++++++|+
T Consensus 111 ~~~~iiDTPG~~~f~~~~~~~~~~-----------aD~~llVvDa 144 (483)
T 3p26_A 111 ANFTIVDAPGHRDFVPNAIMGISQ-----------ADMAILCVDC 144 (483)
T ss_dssp CEEEEECCCCCGGGHHHHHHHHTT-----------CSEEEEEEEC
T ss_pred ceEEEEECCCcHHHHHHHHHhhhh-----------CCEEEEEEEC
Confidence 889999999999888766666665 8999999993
No 407
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.42 E-value=2.6e-05 Score=71.98 Aligned_cols=33 Identities=15% Similarity=0.203 Sum_probs=29.3
Q ss_pred CCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304 193 DFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG 229 (537)
Q Consensus 193 ~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G 229 (537)
..+|..++|+||||+|||||++.+++. ..|..|
T Consensus 35 ~~~g~~~~l~G~~G~GKTtL~~~i~~~----~~~~~g 67 (180)
T 3ec2_A 35 PEEGKGLTFVGSPGVGKTHLAVATLKA----IYEKKG 67 (180)
T ss_dssp GGGCCEEEECCSSSSSHHHHHHHHHHH----HHHHSC
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHH----HHHHcC
Confidence 446899999999999999999999998 766777
No 408
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.42 E-value=3.4e-05 Score=81.52 Aligned_cols=32 Identities=31% Similarity=0.227 Sum_probs=30.0
Q ss_pred CCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304 194 FRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG 229 (537)
Q Consensus 194 ~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G 229 (537)
.+|..++|+||||||||||+++|.|. +.|+.|
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~----l~~~~g 196 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQE----LNSSER 196 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHH----HCCTTS
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhh----cCCCCC
Confidence 57899999999999999999999998 888888
No 409
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=97.42 E-value=4.9e-05 Score=71.47 Aligned_cols=108 Identities=19% Similarity=0.215 Sum_probs=76.2
Q ss_pred CccEEEeccCccCccchhhhhcCCC-ceeeeccccccc-ceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVS 386 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la~-all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVv 386 (537)
...+.++|..++||+++++.|.++. .....+|.+... ..+..++ ...+.+|||+|++.+..+|..+++..+++++|+
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 88 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAF 88 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEEEE
Confidence 3567899999999999999999887 333444444221 1222232 258889999999888888888899999999999
Q ss_pred eCCCcchhhhhh-hhhh--c---CCcEEEEeccc-chh
Q psy16304 387 HSLSGRPDDRCQ-VYLM--S---CNCQVYLISAK-NLS 417 (537)
Q Consensus 387 dshd~~~~~~~~-i~ll--~---~G~ii~~g~nk-dl~ 417 (537)
|..+..+++... .|+. . .+.++...+|| |+.
T Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 126 (212)
T 2j0v_A 89 SLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLR 126 (212)
T ss_dssp ETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhh
Confidence 999988777654 3322 1 26677777777 764
No 410
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=97.41 E-value=0.00021 Score=76.35 Aligned_cols=79 Identities=23% Similarity=0.340 Sum_probs=53.4
Q ss_pred CCeEEEEeCCCCcHHHHHHHHhCC--CCcc----------------------c------cCceeeee----EEEEECCcE
Q psy16304 196 SVPILVLGLDNAGKSSIIKRILGE--PIIS----------------------L------VPTVGFNR----ARVEYGNKY 241 (537)
Q Consensus 196 G~~vgLVG~NGAGKSTLL~~L~G~--~~~~----------------------~------~Pt~G~t~----~~i~i~g~~ 241 (537)
..+++++|..|+|||||++.|++. .+.. . ....|+|. ..+... +.
T Consensus 7 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~-~~ 85 (458)
T 1f60_A 7 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP-KY 85 (458)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS-SE
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecC-Cc
Confidence 357999999999999999999753 0100 0 00123322 234444 48
Q ss_pred EEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecC
Q psy16304 242 EVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCG 286 (537)
Q Consensus 242 ~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~ 286 (537)
.+.+||++|++++...+...+.. ++++++++|+.
T Consensus 86 ~~~iiDtPGh~~f~~~~~~~~~~-----------aD~~ilVvda~ 119 (458)
T 1f60_A 86 QVTVIDAPGHRDFIKNMITGTSQ-----------ADCAILIIAGG 119 (458)
T ss_dssp EEEEEECCCCTTHHHHHHHSSSC-----------CSEEEEEEECS
T ss_pred eEEEEECCCcHHHHHHHHhhhhh-----------CCEEEEEEeCC
Confidence 89999999998877655444443 89999999943
No 411
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.40 E-value=7.2e-05 Score=71.03 Aligned_cols=26 Identities=19% Similarity=0.401 Sum_probs=24.5
Q ss_pred CCCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304 194 FRSVPILVLGLDNAGKSSIIKRILGE 219 (537)
Q Consensus 194 ~~G~~vgLVG~NGAGKSTLL~~L~G~ 219 (537)
.+|..++|+||||||||||++.|++.
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 37999999999999999999999998
No 412
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=97.39 E-value=5.4e-05 Score=68.90 Aligned_cols=108 Identities=19% Similarity=0.245 Sum_probs=69.8
Q ss_pred CccEEEeccCccCccchhhhhcCCC-ceeeeccccccc-ceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVS 386 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la~-all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVv 386 (537)
...+.++|..++||+++++.|.++. .....+|.+... ..+..++ ...+.+|||+|.+.+...|..+++..+++++|+
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 87 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 87 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEEEE
Confidence 4568899999999999999999877 333444443211 1122122 245669999999888888888889999999999
Q ss_pred eCCCcchhhhhh-hhh--hc---CCcEEEEeccc-chh
Q psy16304 387 HSLSGRPDDRCQ-VYL--MS---CNCQVYLISAK-NLS 417 (537)
Q Consensus 387 dshd~~~~~~~~-i~l--l~---~G~ii~~g~nk-dl~ 417 (537)
|..+..+++.+. .|+ +. .+.++...+|| |+.
T Consensus 88 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 125 (182)
T 3bwd_D 88 SLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLR 125 (182)
T ss_dssp ETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhh
Confidence 999988877654 232 22 35667777777 763
No 413
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.39 E-value=0.0003 Score=74.49 Aligned_cols=79 Identities=20% Similarity=0.212 Sum_probs=52.5
Q ss_pred CCeEEEEeCCCCcHHHHHHHHhCCCC---cc----------ccCc-------------------eeeeeE----EEEECC
Q psy16304 196 SVPILVLGLDNAGKSSIIKRILGEPI---IS----------LVPT-------------------VGFNRA----RVEYGN 239 (537)
Q Consensus 196 G~~vgLVG~NGAGKSTLL~~L~G~~~---~~----------~~Pt-------------------~G~t~~----~i~i~g 239 (537)
..+++++|..|+|||||++.|++... .. ..++ .|+|.+ .+...
T Consensus 24 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~- 102 (434)
T 1zun_B 24 MLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTA- 102 (434)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECS-
T ss_pred ceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecC-
Confidence 35799999999999999999975421 00 0111 122221 12223
Q ss_pred cEEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecC
Q psy16304 240 KYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCG 286 (537)
Q Consensus 240 ~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~ 286 (537)
+..+.+||++|++++...+...+.. ++++++++|+.
T Consensus 103 ~~~~~iiDtpGh~~f~~~~~~~~~~-----------aD~~ilVvDa~ 138 (434)
T 1zun_B 103 KRKFIIADTPGHEQYTRNMATGAST-----------CDLAIILVDAR 138 (434)
T ss_dssp SEEEEEEECCCSGGGHHHHHHHHTT-----------CSEEEEEEETT
T ss_pred CceEEEEECCChHHHHHHHHHHHhh-----------CCEEEEEEECC
Confidence 4889999999999887665555554 89999999943
No 414
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.39 E-value=5.7e-05 Score=69.60 Aligned_cols=28 Identities=25% Similarity=0.197 Sum_probs=24.3
Q ss_pred ccCCCCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304 191 LFDFRSVPILVLGLDNAGKSSIIKRILGE 219 (537)
Q Consensus 191 l~~~~G~~vgLVG~NGAGKSTLL~~L~G~ 219 (537)
+...+| ..+|+|+||||||||+.+|.+.
T Consensus 22 ~~~~~g-~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 22 IPFSKG-FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp EECCSS-EEEEEECTTSSHHHHHHHHHHH
T ss_pred EecCCC-cEEEECCCCCCHHHHHHHHHHH
Confidence 445567 8999999999999999999886
No 415
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=97.37 E-value=8.7e-05 Score=67.60 Aligned_cols=107 Identities=20% Similarity=0.256 Sum_probs=74.9
Q ss_pred ccEEEeccCccCccchhhhhcCCC-ceeeecccccc-cceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEe
Q psy16304 311 VPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFN-RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSH 387 (537)
Q Consensus 311 ~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la-~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvd 387 (537)
..+.++|..++||+++++.|.++. .....++.+.. ...+..++ ...+.+|||+|.+.+..++..+++..+++++|+|
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 85 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFS 85 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEEEEE
Confidence 457899999999999999998776 22233333311 11222232 2567799999998888888888889999999999
Q ss_pred CCCcchhhhhh-hhh--hc---CCcEEEEeccc-chh
Q psy16304 388 SLSGRPDDRCQ-VYL--MS---CNCQVYLISAK-NLS 417 (537)
Q Consensus 388 shd~~~~~~~~-i~l--l~---~G~ii~~g~nk-dl~ 417 (537)
..+..++.... .|+ +. .+.++...+|| |+.
T Consensus 86 ~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 122 (186)
T 1mh1_A 86 LVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 122 (186)
T ss_dssp TTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHH
T ss_pred CCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEccccc
Confidence 99988777654 232 11 26667777777 763
No 416
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=97.37 E-value=0.00036 Score=71.25 Aligned_cols=108 Identities=19% Similarity=0.318 Sum_probs=0.0
Q ss_pred eEEEEeCCCCcHHHHHHHHh------------------------------------------------------------
Q psy16304 198 PILVLGLDNAGKSSIIKRIL------------------------------------------------------------ 217 (537)
Q Consensus 198 ~vgLVG~NGAGKSTLL~~L~------------------------------------------------------------ 217 (537)
++.|+|..+|||||++|.+-
T Consensus 9 klLlLG~geSGKSTi~KQmkiih~~gfs~~e~~~~~~~i~~N~~~~~~~li~a~~~l~i~~~~~~~~~~~~~~~~~~~~~ 88 (327)
T 3ohm_A 9 KLLLLGTGESGKSTFIKQMRIIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPYKYEHNKAHAQLVREVDVEK 88 (327)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCCHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTCCCSSTHHHHHHHHHHTCCGGG
T ss_pred eEEEEcCCCccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHhcccccc
Q ss_pred -------------------------------------------------CCCCcc-------ccCceeeeeEEEEECCcE
Q psy16304 218 -------------------------------------------------GEPIIS-------LVPTVGFNRARVEYGNKY 241 (537)
Q Consensus 218 -------------------------------------------------G~~~~~-------~~Pt~G~t~~~i~i~g~~ 241 (537)
..-..+ ..||.|+....+.+.+ +
T Consensus 89 ~~~~~~e~~~~i~~lW~d~~iq~~~~r~~e~~l~d~~~yfl~~l~Ri~~~~Y~PT~~Dilr~r~~TiGi~~~~~~~~~-v 167 (327)
T 3ohm_A 89 VSAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPSYLPTQQDVLRVRVPTTGIIEYPFDLQS-V 167 (327)
T ss_dssp CCCCCTTHHHHHHHHHTCHHHHHHHHGGGGSCCCTTHHHHHTTHHHHHSTTCCCCHHHHTTCCCCCCSEEEEEEEETT-E
T ss_pred cccccHHHHHHHHHHHcCHHHHHHHHccccceecccHHHHHHHHHHHhccCCCccccchhcccCceeeEEEEEEEeec-e
Q ss_pred EEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEee-c-------CcccccCCcccccccCcC-CccccCCcc
Q psy16304 242 EVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIM-C-------GVHQVSGIPDELTSATHL-PLVDFRSVP 312 (537)
Q Consensus 242 ~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~D-s-------~~~~~~~l~~~l~~~~~l-~~~~~~~~~ 312 (537)
.+.+||++|++.+|..|..++.. ++++++|+| + +......+.+.+.++..+ ........+
T Consensus 168 ~l~iwDtgGQe~~R~~w~~yf~~-----------~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~ 236 (327)
T 3ohm_A 168 IFRMVDVGGQRSERRKWIHCFEN-----------VTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSS 236 (327)
T ss_dssp EEEEEEECCSHHHHTTGGGGCSS-----------CSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCE
T ss_pred eeEEEEcCCchhHHHHHHHHhCC-----------CCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCce
Q ss_pred EEEec
Q psy16304 313 ILVLG 317 (537)
Q Consensus 313 L~llG 317 (537)
+.++|
T Consensus 237 iiL~~ 241 (327)
T 3ohm_A 237 VILFL 241 (327)
T ss_dssp EEEEE
T ss_pred EEEEE
No 417
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.37 E-value=7.1e-05 Score=70.40 Aligned_cols=27 Identities=22% Similarity=0.450 Sum_probs=24.1
Q ss_pred CCCCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304 193 DFRSVPILVLGLDNAGKSSIIKRILGE 219 (537)
Q Consensus 193 ~~~G~~vgLVG~NGAGKSTLL~~L~G~ 219 (537)
..+|+.++|+|+|||||||++++|++.
T Consensus 26 ~~~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 26 GEPTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 347999999999999999999999987
No 418
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.37 E-value=8.1e-05 Score=68.83 Aligned_cols=108 Identities=20% Similarity=0.269 Sum_probs=76.7
Q ss_pred CccEEEeccCccCccchhhhhcCCC-ceeeeccccccc-ceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVS 386 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la~-all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVv 386 (537)
...+.++|..++||+++++.|.++. .....+|.+... ..+..++ ...+.+|||+|.+.+..++..+++..+++++|+
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 97 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 97 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEEEE
Confidence 3567899999999999999999886 333344443221 1222232 267889999999888888888889999999999
Q ss_pred eCCCcchhhhhh-hhhh---c--CCcEEEEeccc-chh
Q psy16304 387 HSLSGRPDDRCQ-VYLM---S--CNCQVYLISAK-NLS 417 (537)
Q Consensus 387 dshd~~~~~~~~-i~ll---~--~G~ii~~g~nk-dl~ 417 (537)
|..+..+++.+. .|+. + .+.++...+|| |+.
T Consensus 98 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 135 (194)
T 2atx_A 98 SVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLR 135 (194)
T ss_dssp ETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTST
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhc
Confidence 999988776654 3321 1 25667777777 763
No 419
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=97.36 E-value=0.00023 Score=65.36 Aligned_cols=106 Identities=21% Similarity=0.293 Sum_probs=64.5
Q ss_pred ccEEEeccCccCccchhhhhcCCCc-eeeecccccc-cceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEe
Q psy16304 311 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN-RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSH 387 (537)
Q Consensus 311 ~~L~llGl~~~gKs~li~~LSgG~r-qrvs~ti~la-~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvd 387 (537)
..+.++|..++||+++++.|.++.. ....++.+.. ...+..++ ...+.+|||+|.+.+..++..+++..+++++|++
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 101 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFA 101 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEEEEEE
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEEEE
Confidence 5678999999999999999998762 2222222211 11222232 2568899999998888889999999999999999
Q ss_pred CCCcchhhhhhhhhh-------cCCcEEEEeccc-ch
Q psy16304 388 SLSGRPDDRCQVYLM-------SCNCQVYLISAK-NL 416 (537)
Q Consensus 388 shd~~~~~~~~i~ll-------~~G~ii~~g~nk-dl 416 (537)
..+..++..+..|+. ..+.++....|| |+
T Consensus 102 ~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl 138 (190)
T 3con_A 102 INNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL 138 (190)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTC
T ss_pred CcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcC
Confidence 998877665542221 135666677777 66
No 420
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.36 E-value=0.00023 Score=62.99 Aligned_cols=107 Identities=21% Similarity=0.285 Sum_probs=73.8
Q ss_pred ccEEEeccCccCccchhhhhcCCCc-eeeecccccc-cceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEEe
Q psy16304 311 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFN-RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSH 387 (537)
Q Consensus 311 ~~L~llGl~~~gKs~li~~LSgG~r-qrvs~ti~la-~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVvd 387 (537)
..+.++|..++||+++++.|.++.. ....++.+.. ...+..++ ...+.+|||+|.+.....+..+++..+++++|++
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d 83 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFA 83 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEEEE
Confidence 3577999999999999999998763 2222333211 11222232 2567899999998888888899999999999999
Q ss_pred CCCcchhhhhhhhhh-------cCCcEEEEeccc-chh
Q psy16304 388 SLSGRPDDRCQVYLM-------SCNCQVYLISAK-NLS 417 (537)
Q Consensus 388 shd~~~~~~~~i~ll-------~~G~ii~~g~nk-dl~ 417 (537)
..+..+++....|+. ..+.++....|| |+.
T Consensus 84 ~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~ 121 (166)
T 2ce2_X 84 INNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLA 121 (166)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCS
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhh
Confidence 988877665542221 125666677777 663
No 421
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.35 E-value=8.9e-05 Score=69.66 Aligned_cols=108 Identities=21% Similarity=0.281 Sum_probs=73.8
Q ss_pred CccEEEeccCccCccchhhhhcCCCce-eeeccccccc-ceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEPII-SLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVS 386 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~rq-rvs~ti~la~-all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVv 386 (537)
...+.++|..++||+++++.|.++... ...++.+... ..+..++ ...+.+|||+|.+.+..++..+++..+++++|+
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 104 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 104 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEEEE
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEEEE
Confidence 456889999999999999999988732 2233333211 1122232 257889999999888778888888999999999
Q ss_pred eCCCcchhhhhh-hhh--hc---CCcEEEEeccc-chh
Q psy16304 387 HSLSGRPDDRCQ-VYL--MS---CNCQVYLISAK-NLS 417 (537)
Q Consensus 387 dshd~~~~~~~~-i~l--l~---~G~ii~~g~nk-dl~ 417 (537)
|..+..+++... .|+ +. .+.++....|| |+.
T Consensus 105 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 142 (207)
T 2fv8_A 105 SVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLR 142 (207)
T ss_dssp ETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGG
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhh
Confidence 999887776652 222 11 26667777777 763
No 422
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=97.35 E-value=8.7e-05 Score=69.75 Aligned_cols=109 Identities=18% Similarity=0.228 Sum_probs=75.9
Q ss_pred CCccEEEeccCccCccchhhhhcCCCc-eeeecccc-cccceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEE
Q psy16304 309 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVG-FNRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLV 385 (537)
Q Consensus 309 ~~~~L~llGl~~~gKs~li~~LSgG~r-qrvs~ti~-la~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlV 385 (537)
....+.++|..++||+++++.|.++.. ....++.+ .....+..++ ...+.+|||+|.+.+..++..+++..+++++|
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 108 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLIC 108 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 346788999999999999988887662 22223332 1122222232 25666999999988888888899999999999
Q ss_pred EeCCCcchhhhhh-hhhh--c---CCcEEEEeccc-chh
Q psy16304 386 SHSLSGRPDDRCQ-VYLM--S---CNCQVYLISAK-NLS 417 (537)
Q Consensus 386 vdshd~~~~~~~~-i~ll--~---~G~ii~~g~nk-dl~ 417 (537)
+|..+..+++... .|+. . .+.++...+|| |+.
T Consensus 109 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 147 (204)
T 4gzl_A 109 FSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 147 (204)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhc
Confidence 9999988887764 2321 1 36677777777 764
No 423
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.35 E-value=0.00037 Score=62.89 Aligned_cols=106 Identities=22% Similarity=0.284 Sum_probs=67.7
Q ss_pred ccEEEeccCccCccchhhhhcCCCce-eeecc--cccccceeccCCceEEEEEecCchhhH------HHHHHHHHh--cC
Q psy16304 311 VPILVLGLDNAGKSSIIKRILGEPII-SLVPT--VGFNRARVEYGNKYEVFLYDLGGSEDF------RTIWKQYLG--TV 379 (537)
Q Consensus 311 ~~L~llGl~~~gKs~li~~LSgG~rq-rvs~t--i~la~all~~~e~p~lllLDT~Gl~~~------~~l~~~~~~--~~ 379 (537)
..+.++|.+++||+++++.|.++... ...++ .......+..++ ..+.+|||+|+..+ ..+...|++ ..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 82 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG-EKFKVVDLPGVYSLTANSIDEIIARDYIINEKP 82 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT-EEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC-cEEEEEECCCcccCCCcchhHHHHHHHHhcCCC
Confidence 35779999999999999999986521 11111 122222333344 78999999998543 244566664 67
Q ss_pred CEEEEEEeCCCcchhhhhhhhhhcCCcEEEEeccc-chh
Q psy16304 380 SQTLLVSHSLSGRPDDRCQVYLMSCNCQVYLISAK-NLS 417 (537)
Q Consensus 380 ~~vIlVvdshd~~~~~~~~i~ll~~G~ii~~g~nk-dl~ 417 (537)
+++++|+|..+.......-..+.+.+.++...+|| |+.
T Consensus 83 ~~~i~v~D~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 121 (165)
T 2wji_A 83 DLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDLA 121 (165)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHTTCCEEEEEECHHHH
T ss_pred CEEEEEecCCchhHhHHHHHHHHhcCCCEEEEEEchHhc
Confidence 89999998877543322222233457778888888 763
No 424
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=97.34 E-value=6.2e-05 Score=68.20 Aligned_cols=106 Identities=14% Similarity=0.190 Sum_probs=71.1
Q ss_pred CccEEEeccCccCccchhhhhcCCCcee-eeccc--ccccceeccCCceEEEEEecCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEPIIS-LVPTV--GFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVS 386 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~rqr-vs~ti--~la~all~~~e~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVv 386 (537)
...+.++|..++||+++++.|.++.... ..++. .+....+..++ ..+.+|||+|.+.+..++..+++..+++++|+
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 86 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVND-KKITFLDTPGHEAFTTMRARGAQVTDIVILVV 86 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETT-EEEEESCCCSSSSSSCSCCSSCCCCCEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCC-ceEEEEECCCCHHHHHHHHHHHhhCCEEEEEE
Confidence 4567899999999999999999887322 11111 22233344455 78999999999777777777777888999999
Q ss_pred eCCCcchhhhhh--hhhhcCCcEEEEeccc-ch
Q psy16304 387 HSLSGRPDDRCQ--VYLMSCNCQVYLISAK-NL 416 (537)
Q Consensus 387 dshd~~~~~~~~--i~ll~~G~ii~~g~nk-dl 416 (537)
|..+........ ..+...+.++....|| |+
T Consensus 87 d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl 119 (178)
T 2lkc_A 87 AADDGVMPQTVEAINHAKAANVPIIVAINKMDK 119 (178)
T ss_dssp ETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTS
T ss_pred ECCCCCcHHHHHHHHHHHhCCCCEEEEEECccC
Confidence 887743333222 2222345666666777 66
No 425
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=97.34 E-value=0.00027 Score=79.36 Aligned_cols=77 Identities=19% Similarity=0.135 Sum_probs=54.5
Q ss_pred CCeEEEEeCCCCcHHHHHHHHhC---CCC--c---------cc-------cCceeeeeEEEEECCcEEEEEeecCCCchh
Q psy16304 196 SVPILVLGLDNAGKSSIIKRILG---EPI--I---------SL-------VPTVGFNRARVEYGNKYEVFLYDLGGSEDF 254 (537)
Q Consensus 196 G~~vgLVG~NGAGKSTLL~~L~G---~~~--~---------~~-------~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~ 254 (537)
-.+++|+|..|+|||||++.|.+ ... . .. ..|.+.....+.+.+ ..+.+||++|+.++
T Consensus 10 ~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~-~~i~liDTPG~~df 88 (693)
T 2xex_A 10 TRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG-HRVNIIDTPGHVDF 88 (693)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT-EEEEEECCCCCSSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC-eeEEEEECcCCcch
Confidence 45799999999999999999983 210 0 00 011111123455665 99999999999888
Q ss_pred hHHHHhhhhccccCCCCCCCccceeeEEee
Q psy16304 255 RTIWKQYLGTVSQTPLGRPDSRTCQVYLIM 284 (537)
Q Consensus 255 r~~~~~~i~~v~Q~~~l~~~~~~~il~v~D 284 (537)
...+...+.. ++++++++|
T Consensus 89 ~~~~~~~l~~-----------aD~~llVvD 107 (693)
T 2xex_A 89 TVEVERSLRV-----------LDGAVTVLD 107 (693)
T ss_dssp CHHHHHHHHH-----------CSEEEEEEE
T ss_pred HHHHHHHHHH-----------CCEEEEEEC
Confidence 7777677766 899999999
No 426
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.33 E-value=6.1e-05 Score=69.94 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=21.4
Q ss_pred CCeEEEEeCCCCcHHHHHHHHhC
Q psy16304 196 SVPILVLGLDNAGKSSIIKRILG 218 (537)
Q Consensus 196 G~~vgLVG~NGAGKSTLL~~L~G 218 (537)
|+.++|+|+||||||||++.|++
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc
Confidence 57899999999999999999986
No 427
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=97.33 E-value=0.00041 Score=66.19 Aligned_cols=108 Identities=13% Similarity=0.145 Sum_probs=72.2
Q ss_pred CccEEEeccCccCccchhhhhcCCCce--eeecccccc--cceeccCC-ceEEEEEecCchhh-HHHHHHHHHhcCCEEE
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEPII--SLVPTVGFN--RARVEYGN-KYEVFLYDLGGSED-FRTIWKQYLGTVSQTL 383 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~rq--rvs~ti~la--~all~~~e-~p~lllLDT~Gl~~-~~~l~~~~~~~~~~vI 383 (537)
...+.++|.+++||+++++.|.++... ...++.+.. ...+..++ ...+.+|||+|.+. ...++..|++.+++.+
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~i 116 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYL 116 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCEEE
Confidence 356889999999999999999875531 111222211 22233343 24678999999865 3444566677789999
Q ss_pred EEEeCCCcchhhhhhhhh---hc----CCcEEEEeccc-chh
Q psy16304 384 LVSHSLSGRPDDRCQVYL---MS----CNCQVYLISAK-NLS 417 (537)
Q Consensus 384 lVvdshd~~~~~~~~i~l---l~----~G~ii~~g~nk-dl~ 417 (537)
+|++..+..+++.+..|. .+ .+.++...+|| |+.
T Consensus 117 lVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 158 (211)
T 2g3y_A 117 IVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV 158 (211)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCG
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHh
Confidence 999999998888766332 21 36778888888 774
No 428
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=97.33 E-value=0.00011 Score=68.67 Aligned_cols=108 Identities=20% Similarity=0.267 Sum_probs=76.4
Q ss_pred CccEEEeccCccCccchhhhhcCCCc-eeeeccccccc-ceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGFNR-ARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVS 386 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~r-qrvs~ti~la~-all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVv 386 (537)
...+.++|..++||+++++.|.++.. ....++.+... ..+..++ ...+.+|||+|.+.+..+|..+++..+++++|+
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 104 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 104 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEEEE
Confidence 45678999999999999999998873 22333333221 1222232 257889999999888888888888999999999
Q ss_pred eCCCcchhhhhh-hhh--hc---CCcEEEEeccc-chh
Q psy16304 387 HSLSGRPDDRCQ-VYL--MS---CNCQVYLISAK-NLS 417 (537)
Q Consensus 387 dshd~~~~~~~~-i~l--l~---~G~ii~~g~nk-dl~ 417 (537)
|..+..+++... .|+ +. .+.++....|| |+.
T Consensus 105 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 142 (201)
T 2gco_A 105 SIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 142 (201)
T ss_dssp ETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGT
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhh
Confidence 999888777663 222 11 26667777777 763
No 429
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=97.31 E-value=0.00017 Score=77.18 Aligned_cols=80 Identities=23% Similarity=0.141 Sum_probs=44.1
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCC--Cc----------------------cc------cCceeeee----EEEEECCc
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEP--II----------------------SL------VPTVGFNR----ARVEYGNK 240 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~--~~----------------------~~------~Pt~G~t~----~~i~i~g~ 240 (537)
+..+++++|..|+|||||++.|.+.. +. .. ....|+|. ..+.+++
T Consensus 42 ~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~- 120 (467)
T 1r5b_A 42 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH- 120 (467)
T ss_dssp EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS-
T ss_pred CeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC-
Confidence 34679999999999999999986310 00 00 00123322 2344454
Q ss_pred EEEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecC
Q psy16304 241 YEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCG 286 (537)
Q Consensus 241 ~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~ 286 (537)
..+.+||++|++++...+...+.. ++++++++|+.
T Consensus 121 ~~~~iiDtPGh~~f~~~~~~~~~~-----------aD~~ilVvDa~ 155 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYVTNMINGASQ-----------ADIGVLVISAR 155 (467)
T ss_dssp EEEEECCCCC-----------TTS-----------CSEEEEEEECS
T ss_pred eEEEEEECCCcHHHHHHHHhhccc-----------CCEEEEEEeCC
Confidence 899999999998776544333333 89999999943
No 430
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=97.30 E-value=0.00056 Score=68.92 Aligned_cols=105 Identities=18% Similarity=0.266 Sum_probs=71.3
Q ss_pred cEEEeccCccCccchhhhhcCCCceeeecccccccc----eeccCCceEEEEEecCchhh--------HHHHHHHHHhcC
Q psy16304 312 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA----RVEYGNKYEVFLYDLGGSED--------FRTIWKQYLGTV 379 (537)
Q Consensus 312 ~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~a----ll~~~e~p~lllLDT~Gl~~--------~~~l~~~~~~~~ 379 (537)
.+.++|.+++||+++++.|.|.....+++..+.++. .+..++ ..+.+|||+|+.. +......+++..
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~-~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~a 87 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR-RQIVFVDTPGLHKPMDALGEFMDQEVYEALADV 87 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT-EEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCC-cEEEEecCccccchhhHHHHHHHHHHHHHHhcC
Confidence 467999999999999999998875544333333322 233344 8999999999843 445556778889
Q ss_pred CEEEEEEeCCCcchhhhhhh--hhhcC--CcEEEEeccc-chh
Q psy16304 380 SQTLLVSHSLSGRPDDRCQV--YLMSC--NCQVYLISAK-NLS 417 (537)
Q Consensus 380 ~~vIlVvdshd~~~~~~~~i--~ll~~--G~ii~~g~nk-dl~ 417 (537)
+++++|+|.++........+ .+-+. +.++....|| |+.
T Consensus 88 d~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~ 130 (301)
T 1wf3_A 88 NAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAA 130 (301)
T ss_dssp SEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGC
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccC
Confidence 99999999887644332222 12222 6777777888 763
No 431
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.29 E-value=7e-06 Score=79.73 Aligned_cols=35 Identities=23% Similarity=0.424 Sum_probs=29.1
Q ss_pred CeEEEEeCCCCcHHHHHHHHhCCCCccccCceeeeeEEEEECC
Q psy16304 197 VPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGN 239 (537)
Q Consensus 197 ~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G~t~~~i~i~g 239 (537)
++++|+||||||||||+++|+|. ..|+.| .|.++|
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~----~~~~~G----~i~~~g 62 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTA----LIPDLT----LLHFRN 62 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHH----HSCCTT----TC----
T ss_pred cEEEEECCCCCCHHHHHHHHhcc----cccCCC----eEEECC
Confidence 67899999999999999999999 899999 777665
No 432
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.28 E-value=0.00026 Score=66.76 Aligned_cols=103 Identities=19% Similarity=0.292 Sum_probs=72.8
Q ss_pred CccEEEeccCccCccchhhhhcCCCcee----eecccccccceeccCCceEEEEEecCchhhHHHHHHHHHhc----CCE
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEPIIS----LVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGT----VSQ 381 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~rqr----vs~ti~la~all~~~e~p~lllLDT~Gl~~~~~l~~~~~~~----~~~ 381 (537)
...+.++|..++||+++++.|.++.... ..++.+.. . .. ..+.+|||+|++.++..|..+++. .++
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~--~---~~-~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 85 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD--Y---DG-SGVTLVDFPGHVKLRYKLSDYLKTRAKFVKG 85 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETT--G---GG-SSCEEEECCCCGGGTHHHHHHHHHHGGGEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEE--e---eC-ceEEEEECCCcHHHHHHHHHHHHhccccCCE
Confidence 4567899999999999999999887332 21222211 1 22 579999999998888888888776 689
Q ss_pred EEEEEeCC-Ccchhhhhhhhhh----------cCCcEEEEeccc-chhh
Q psy16304 382 TLLVSHSL-SGRPDDRCQVYLM----------SCNCQVYLISAK-NLSN 418 (537)
Q Consensus 382 vIlVvdsh-d~~~~~~~~i~ll----------~~G~ii~~g~nk-dl~~ 418 (537)
+++|+|.. +...+.....++. ..+.++....|| |+..
T Consensus 86 ~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 134 (218)
T 1nrj_B 86 LIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT 134 (218)
T ss_dssp EEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTT
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcc
Confidence 99999988 6666655442221 146677777787 7743
No 433
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=97.28 E-value=0.0002 Score=80.49 Aligned_cols=27 Identities=33% Similarity=0.573 Sum_probs=24.9
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCC
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPI 221 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~ 221 (537)
.+.+|+|+|..|||||||+|.|+|..+
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~ 94 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENL 94 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 578899999999999999999999765
No 434
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=97.27 E-value=0.00028 Score=69.99 Aligned_cols=106 Identities=16% Similarity=0.226 Sum_probs=75.1
Q ss_pred ccEEEeccCccCccchhhhhcCCCceeeecccccccc----eeccCCceEEEEEecCchhhHH----------HHHHHHH
Q psy16304 311 VPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA----RVEYGNKYEVFLYDLGGSEDFR----------TIWKQYL 376 (537)
Q Consensus 311 ~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~a----ll~~~e~p~lllLDT~Gl~~~~----------~l~~~~~ 376 (537)
..+.++|.+++||+++++.|.|.. +.+....+.+.. .+..++ .++.+|||+|...+. .+++.|+
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~~-~~v~~~~g~t~~~~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~ 81 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGSR-QRVGNWAGVTVERKEGQFSTTD-HQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTC-EEEEECTTSSSEEEEEEEECSS-CEEEEEECCCCSCSCC----CCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-cccCCCCCeeEEEEEEEEEeCC-CceEEEECcCCCccccccccCCHHHHHHHHHH
Confidence 457799999999999999999876 455444443322 233344 689999999974322 3455554
Q ss_pred --hcCCEEEEEEeCCCcchhhhhhhhhhcCCcEEEEeccc-chhh
Q psy16304 377 --GTVSQTLLVSHSLSGRPDDRCQVYLMSCNCQVYLISAK-NLSN 418 (537)
Q Consensus 377 --~~~~~vIlVvdshd~~~~~~~~i~ll~~G~ii~~g~nk-dl~~ 418 (537)
+..+++++|+|..+.........++.+.+.++....|+ |+..
T Consensus 82 ~~~~~d~ii~VvD~~~~~~~~~~~~~l~~~~~p~ivv~NK~Dl~~ 126 (274)
T 3i8s_A 82 LSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDIAE 126 (274)
T ss_dssp HHTCCSEEEEEEEGGGHHHHHHHHHHHHHHTCCEEEEEECHHHHH
T ss_pred hhcCCCEEEEEecCCChHHHHHHHHHHHhcCCCEEEEEECccchh
Confidence 57899999999888665555556666778888888888 7643
No 435
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=97.27 E-value=0.0003 Score=72.42 Aligned_cols=26 Identities=35% Similarity=0.539 Sum_probs=23.6
Q ss_pred CCeEEEEeCCCCcHHHHHHHHhCCCC
Q psy16304 196 SVPILVLGLDNAGKSSIIKRILGEPI 221 (537)
Q Consensus 196 G~~vgLVG~NGAGKSTLL~~L~G~~~ 221 (537)
..+|+++|.+|||||||++.|+|.++
T Consensus 31 ~~~I~vvG~~~~GKSSLln~L~g~~~ 56 (353)
T 2x2e_A 31 LPQIAVVGGQSAGKSSVLENFVGRDF 56 (353)
T ss_dssp CCEEEEECBTTSSHHHHHHTTTTSCC
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCc
Confidence 45799999999999999999999865
No 436
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=97.26 E-value=0.00029 Score=69.26 Aligned_cols=105 Identities=14% Similarity=0.096 Sum_probs=76.3
Q ss_pred cEEEeccCccCccchhhhhcCCCceeeecccccc----cceeccCCceEEEEEecCchhhHH----------HHHHHHH-
Q psy16304 312 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN----RARVEYGNKYEVFLYDLGGSEDFR----------TIWKQYL- 376 (537)
Q Consensus 312 ~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la----~all~~~e~p~lllLDT~Gl~~~~----------~l~~~~~- 376 (537)
.+.++|.+++||+++++.|.|.. +.+....+.+ ...+..++ ..+.++||+|..... .+++.|+
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~-~~v~~~pg~Tv~~~~~~~~~~~-~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~ 80 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN-QRVGNWPGVTVEKKTGEFLLGE-HLIEITDLPGVYSLVANAEGISQDEQIAAQSVI 80 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS-EEEEECTTSSSEEEEEEEEETT-EEEEEEECCCCSSCC------CHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-CCccCCCCceEEEEEEEEEECC-eEEEEEeCCCcccccccccCCCHHHHHHHHHHh
Confidence 46789999999999999999875 4443333333 22333354 789999999984332 2556777
Q ss_pred -hcCCEEEEEEeCCCcchhhhhhhhhhcCCcEEEEeccc-chhh
Q psy16304 377 -GTVSQTLLVSHSLSGRPDDRCQVYLMSCNCQVYLISAK-NLSN 418 (537)
Q Consensus 377 -~~~~~vIlVvdshd~~~~~~~~i~ll~~G~ii~~g~nk-dl~~ 418 (537)
+..+++++|+|..+.........++.+.+.++....|+ |+..
T Consensus 81 ~~~~d~vi~VvDas~~~~~~~l~~~l~~~~~pvilv~NK~Dl~~ 124 (256)
T 3iby_A 81 DLEYDCIINVIDACHLERHLYLTSQLFELGKPVVVALNMMDIAE 124 (256)
T ss_dssp HSCCSEEEEEEEGGGHHHHHHHHHHHTTSCSCEEEEEECHHHHH
T ss_pred hCCCCEEEEEeeCCCchhHHHHHHHHHHcCCCEEEEEEChhcCC
Confidence 77899999999988766555557777788888888888 7643
No 437
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=97.22 E-value=8.8e-05 Score=67.10 Aligned_cols=71 Identities=13% Similarity=0.106 Sum_probs=44.0
Q ss_pred cchhhhhcCCCceeeecccccc------cceeccCCceEEEEEe--cCchhhHH--HHHHHHHh--cCCEEEEEEeCCCc
Q psy16304 324 SSIIKRILGEPIISLVPTVGFN------RARVEYGNKYEVFLYD--LGGSEDFR--TIWKQYLG--TVSQTLLVSHSLSG 391 (537)
Q Consensus 324 s~li~~LSgG~rqrvs~ti~la------~all~~~e~p~lllLD--T~Gl~~~~--~l~~~~~~--~~~~vIlVvdshd~ 391 (537)
...+.+|||||+|++ +++ ++++. + |+++++| |+|++... .+++.+.+ ..+.+++++ +|+.
T Consensus 52 ~~~~~~LSgGe~qrv----~lA~~Lalaral~~-~--p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiiv-sH~~ 123 (148)
T 1f2t_B 52 ERPLTFLSGGERIAL----GLAFRLAMSLYLAG-E--ISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILV-SHDE 123 (148)
T ss_dssp EECGGGSCHHHHHHH----HHHHHHHHHHHHHS-S--CSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEE-ESCG
T ss_pred cCChhHCCHHHHHHH----HHHhhhHHHHHHcC-C--CCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEE-EChH
Confidence 445889999999999 554 56664 4 8999999 99994332 23333222 123456666 7887
Q ss_pred chhhhhh-hhhh
Q psy16304 392 RPDDRCQ-VYLM 402 (537)
Q Consensus 392 ~~~~~~~-i~ll 402 (537)
.....++ ++++
T Consensus 124 ~~~~~~d~ii~l 135 (148)
T 1f2t_B 124 ELKDAADHVIRI 135 (148)
T ss_dssp GGGGGCSEEEEE
T ss_pred HHHHhCCEEEEE
Confidence 4333333 5555
No 438
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.21 E-value=0.00011 Score=70.72 Aligned_cols=27 Identities=15% Similarity=0.241 Sum_probs=24.9
Q ss_pred CCCCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304 193 DFRSVPILVLGLDNAGKSSIIKRILGE 219 (537)
Q Consensus 193 ~~~G~~vgLVG~NGAGKSTLL~~L~G~ 219 (537)
..+|.+++|+|+|||||||++++|.|.
T Consensus 17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 17 GTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 458999999999999999999999985
No 439
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.21 E-value=0.00083 Score=61.19 Aligned_cols=105 Identities=16% Similarity=0.361 Sum_probs=69.0
Q ss_pred CccEEEeccCccCccchhhhhcCCCceeeecccccc----cceeccCCceEEEEEecCchhh----HH-----HHHHHHH
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN----RARVEYGNKYEVFLYDLGGSED----FR-----TIWKQYL 376 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la----~all~~~e~p~lllLDT~Gl~~----~~-----~l~~~~~ 376 (537)
...+.++|.+++||+++++.|.++....+.+..+.+ ...+..++ .++.+|||+|++. .. ..| .++
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~Dt~G~~~~~~~~~~~~~~~~~-~~~ 81 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG-MPLHIIDTAGLREASDEVERIGIERAW-QEI 81 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT-EEEEEEECCCCSCCSSHHHHHHHHHHH-HHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECC-eEEEEEECCCcccchhHHHHHHHHHHH-HHH
Confidence 345789999999999999999988744333332322 23344454 6789999999832 11 122 356
Q ss_pred hcCCEEEEEEeCCCcchhhhhh--hhhhc---CCcEEEEeccc-ch
Q psy16304 377 GTVSQTLLVSHSLSGRPDDRCQ--VYLMS---CNCQVYLISAK-NL 416 (537)
Q Consensus 377 ~~~~~vIlVvdshd~~~~~~~~--i~ll~---~G~ii~~g~nk-dl 416 (537)
+..+++++|+|.++..+++... ..+.+ .+.++....|| |+
T Consensus 82 ~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl 127 (172)
T 2gj8_A 82 EQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADI 127 (172)
T ss_dssp HTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHH
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccC
Confidence 7889999999998877655332 11121 35667777777 65
No 440
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=97.20 E-value=0.00075 Score=70.86 Aligned_cols=80 Identities=23% Similarity=0.231 Sum_probs=52.0
Q ss_pred CCeEEEEeCCCCcHHHHHHHHhCCCCc----cccC--ce--eeeeEEEEE-------------C--C-----cEEEEEee
Q psy16304 196 SVPILVLGLDNAGKSSIIKRILGEPII----SLVP--TV--GFNRARVEY-------------G--N-----KYEVFLYD 247 (537)
Q Consensus 196 G~~vgLVG~NGAGKSTLL~~L~G~~~~----~~~P--t~--G~t~~~i~i-------------~--g-----~~~i~~~D 247 (537)
-.+++++|..|+|||||++.|+|.... ...+ |. |+....+.. + + ...+.+||
T Consensus 10 ~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiD 89 (410)
T 1kk1_A 10 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFID 89 (410)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEE
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEEE
Confidence 357999999999999999999975321 1111 22 222222211 1 1 26899999
Q ss_pred cCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecC
Q psy16304 248 LGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCG 286 (537)
Q Consensus 248 ~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~ 286 (537)
++|++++...+...... ++.+++++|+.
T Consensus 90 tPGh~~f~~~~~~~~~~-----------~D~~ilVvda~ 117 (410)
T 1kk1_A 90 APGHEALMTTMLAGASL-----------MDGAILVIAAN 117 (410)
T ss_dssp CSSHHHHHHHHHHCGGG-----------CSEEEEEEETT
T ss_pred CCChHHHHHHHHhhhhh-----------CCEEEEEEECC
Confidence 99998776444333333 79999999943
No 441
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=97.18 E-value=0.0011 Score=67.00 Aligned_cols=105 Identities=21% Similarity=0.320 Sum_probs=74.7
Q ss_pred cEEEeccCccCccchhhhhcCCCceeeecccccccc----eeccC-CceEEEEEecCchh----------hHHHHHHHHH
Q psy16304 312 PILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA----RVEYG-NKYEVFLYDLGGSE----------DFRTIWKQYL 376 (537)
Q Consensus 312 ~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~a----ll~~~-e~p~lllLDT~Gl~----------~~~~l~~~~~ 376 (537)
.+.++|.+++||+++++.|.|.....+++..+.++. ....+ + ..+.++||+|+. .+...+..++
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~-~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l 90 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNE-AQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSL 90 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTT-EEEEEEECCCCCCCCTTCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCC-CeEEEEECcCCCccccchhHHHHHHHHHHHHh
Confidence 466899999999999999998876555554444433 23333 4 899999999982 3445667788
Q ss_pred hcCCEEEEEEeCCCcchhhhhhhh---hhcCCcEEEEeccc-chh
Q psy16304 377 GTVSQTLLVSHSLSGRPDDRCQVY---LMSCNCQVYLISAK-NLS 417 (537)
Q Consensus 377 ~~~~~vIlVvdshd~~~~~~~~i~---ll~~G~ii~~g~nk-dl~ 417 (537)
+..+++++|+|.++.........| +...+.++....|| |+.
T Consensus 91 ~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~ 135 (308)
T 3iev_A 91 EEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKI 135 (308)
T ss_dssp HHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGS
T ss_pred hcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCC
Confidence 899999999999887665544432 22345667777777 763
No 442
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.17 E-value=0.00082 Score=70.53 Aligned_cols=81 Identities=17% Similarity=0.152 Sum_probs=51.9
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCCccc----cC--ce--eeeeEEEEE-------------C--C-----cEEEEEe
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPIISL----VP--TV--GFNRARVEY-------------G--N-----KYEVFLY 246 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~----~P--t~--G~t~~~i~i-------------~--g-----~~~i~~~ 246 (537)
+-.+++++|..++|||||++.|+|...... .+ |. |+....+.. + + ...+.+|
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 86 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV 86 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence 456799999999999999999997532111 11 22 222222221 1 1 2689999
Q ss_pred ecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeecC
Q psy16304 247 DLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCG 286 (537)
Q Consensus 247 D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~ 286 (537)
|++|++++...+..... .++.+++++|++
T Consensus 87 DtPGh~~f~~~~~~~~~-----------~~D~~ilVvda~ 115 (408)
T 1s0u_A 87 DSPGHETLMATMLSGAS-----------LMDGAILVIAAN 115 (408)
T ss_dssp ECSSHHHHHHHHHTTCS-----------CCSEEEEEEETT
T ss_pred ECCCHHHHHHHHHHhHh-----------hCCEEEEEEECC
Confidence 99999877643333222 278999999943
No 443
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.16 E-value=0.00013 Score=68.84 Aligned_cols=33 Identities=15% Similarity=0.173 Sum_probs=28.7
Q ss_pred CCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304 193 DFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG 229 (537)
Q Consensus 193 ~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G 229 (537)
..+|.+++|+|++||||||+++.|.+. +.+..|
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~----~~~~~~ 51 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQT----LREQGI 51 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHH----HHHTTC
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHH----HhhcCC
Confidence 347899999999999999999999997 666666
No 444
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=97.16 E-value=0.0019 Score=61.52 Aligned_cols=107 Identities=13% Similarity=0.028 Sum_probs=67.2
Q ss_pred CCccEEEeccCccCccchhhhhcCCCceeeeccccccc----ceeccCCceEEEEEecCch------hhH---HHHHHHH
Q psy16304 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNR----ARVEYGNKYEVFLYDLGGS------EDF---RTIWKQY 375 (537)
Q Consensus 309 ~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~----all~~~e~p~lllLDT~Gl------~~~---~~l~~~~ 375 (537)
....+.++|..++||+++++.|.++... ..+....+. ..+..++ ..+.+|||+|+ +.. ...+..+
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~~~-~~~~~~~t~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 105 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRANVD-VQSYSFTTKNLYVGHFDHKL-NKYQIIDTPGLLDRAFENRNTIEMTTITAL 105 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTCEE-EECC-----CEEEEEEEETT-EEEEEEECTTTTTSCGGGCCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCCcceeeeeeeeecCC-CeEEEEECCCCcCcccchhhhHHHHHHHHh
Confidence 3456889999999999999999988743 222212222 2222233 68999999998 321 2234556
Q ss_pred HhcCCEEEEEEeCCCcchhhhhh--hh---hhc--CCcEEEEeccc-chh
Q psy16304 376 LGTVSQTLLVSHSLSGRPDDRCQ--VY---LMS--CNCQVYLISAK-NLS 417 (537)
Q Consensus 376 ~~~~~~vIlVvdshd~~~~~~~~--i~---ll~--~G~ii~~g~nk-dl~ 417 (537)
....+++++|+|..+..++.... .+ +.. .+.++....|| |+.
T Consensus 106 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~ 155 (228)
T 2qu8_A 106 AHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKC 155 (228)
T ss_dssp HTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGC
T ss_pred hccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccC
Confidence 67778999999998876654211 11 122 26667777777 763
No 445
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.15 E-value=0.00013 Score=68.67 Aligned_cols=34 Identities=32% Similarity=0.433 Sum_probs=29.3
Q ss_pred ccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304 191 LFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG 229 (537)
Q Consensus 191 l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G 229 (537)
+...+|+.++|+|+|||||||+.+.|++. +. ..|
T Consensus 20 ~~~~~g~~i~l~G~sGsGKSTl~~~La~~----l~-~~G 53 (200)
T 3uie_A 20 LLDQKGCVIWVTGLSGSGKSTLACALNQM----LY-QKG 53 (200)
T ss_dssp HHTSCCEEEEEECSTTSSHHHHHHHHHHH----HH-HTT
T ss_pred hcCCCCeEEEEECCCCCCHHHHHHHHHHH----HH-hcC
Confidence 44568999999999999999999999997 55 566
No 446
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.14 E-value=0.0002 Score=67.95 Aligned_cols=27 Identities=19% Similarity=0.347 Sum_probs=24.6
Q ss_pred CCCCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304 193 DFRSVPILVLGLDNAGKSSIIKRILGE 219 (537)
Q Consensus 193 ~~~G~~vgLVG~NGAGKSTLL~~L~G~ 219 (537)
..+|..++|+||+|||||||++.|.+.
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 347999999999999999999999975
No 447
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.13 E-value=0.00018 Score=65.69 Aligned_cols=26 Identities=15% Similarity=0.373 Sum_probs=24.0
Q ss_pred CCCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304 194 FRSVPILVLGLDNAGKSSIIKRILGE 219 (537)
Q Consensus 194 ~~G~~vgLVG~NGAGKSTLL~~L~G~ 219 (537)
.+|..++|+|+|||||||+.+.|.+.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 46899999999999999999999986
No 448
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.12 E-value=0.00023 Score=66.78 Aligned_cols=33 Identities=24% Similarity=0.275 Sum_probs=23.8
Q ss_pred ccccccCCCCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304 187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILGE 219 (537)
Q Consensus 187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~ 219 (537)
.++++...+|.+++|+|++||||||+.+.|++.
T Consensus 16 ~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 16 ENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp --------CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceeEecCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 456677788999999999999999999999875
No 449
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=97.11 E-value=0.00049 Score=73.86 Aligned_cols=107 Identities=18% Similarity=0.185 Sum_probs=57.4
Q ss_pred CccEEEeccCccCccchhhhhcCCCceeeecccccccc----eeccCCceEEEEEecCchhhHHHHHHH--------HHh
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA----RVEYGNKYEVFLYDLGGSEDFRTIWKQ--------YLG 377 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~a----ll~~~e~p~lllLDT~Gl~~~~~l~~~--------~~~ 377 (537)
...+.++|.+++||+++++.|.+.....+.+..++++. .+..++ .++.+|||+|++.....++. +++
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g-~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~ 311 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK-TMFRLTDTAGLREAGEEIEHEGIRRSRMKMA 311 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT-EEEEEEC--------------------CCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC-eEEEEEECCCCCcchhHHHHHHHHHHHhhcc
Confidence 45688999999999999999999876666555454443 234455 88999999999766655543 456
Q ss_pred cCCEEEEEEeCCCcchhhhh---hhhh-hcCCcEEEEeccc-chh
Q psy16304 378 TVSQTLLVSHSLSGRPDDRC---QVYL-MSCNCQVYLISAK-NLS 417 (537)
Q Consensus 378 ~~~~vIlVvdshd~~~~~~~---~i~l-l~~G~ii~~g~nk-dl~ 417 (537)
.++.+++|+|..+..+.+.. ..++ .-.+.++....|| |+.
T Consensus 312 ~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~~~piIvV~NK~Dl~ 356 (476)
T 3gee_A 312 EADLILYLLDLGTERLDDELTEIRELKAAHPAAKFLTVANKLDRA 356 (476)
T ss_dssp SCSEEEEEEETTTCSSGGGHHHHHHHHHHCTTSEEEEEEECTTSC
T ss_pred cCCEEEEEEECCCCcchhhhHHHHHHHHhcCCCCEEEEEECcCCC
Confidence 78999999999988766322 1111 1136777777888 763
No 450
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.09 E-value=0.0001 Score=68.01 Aligned_cols=107 Identities=21% Similarity=0.288 Sum_probs=68.1
Q ss_pred CCccEEEeccCccCccchhhhhcCCCceeeecccccccceeccCCceEEEEEecCchhhHHHHHHHHHhc----CCEEEE
Q psy16304 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGT----VSQTLL 384 (537)
Q Consensus 309 ~~~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~all~~~e~p~lllLDT~Gl~~~~~l~~~~~~~----~~~vIl 384 (537)
....+.++|..++||+++++.|.++............... .... ..+.+|||+|...+...|..++.. .+++++
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~-~~~~-~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~ 124 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA-DYDG-SGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIF 124 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSSCC-------------CCCC-TTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee-eecC-CeEEEEECCCCchHHHHHHHHHHhhcccCCEEEE
Confidence 3456889999999999999999988732211111111111 1122 678899999997666666666554 689999
Q ss_pred EEeCC-Ccchhhhhhhhhh----------cCCcEEEEeccc-chh
Q psy16304 385 VSHSL-SGRPDDRCQVYLM----------SCNCQVYLISAK-NLS 417 (537)
Q Consensus 385 Vvdsh-d~~~~~~~~i~ll----------~~G~ii~~g~nk-dl~ 417 (537)
|+|.. +...+.....|+. ..+.++....|| |+.
T Consensus 125 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 169 (193)
T 2ged_A 125 MVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELF 169 (193)
T ss_dssp EEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTST
T ss_pred EEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhc
Confidence 99988 6666655442221 136677777777 774
No 451
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=97.07 E-value=0.0005 Score=75.83 Aligned_cols=77 Identities=18% Similarity=0.264 Sum_probs=47.8
Q ss_pred CeEEEEeCCCCcHHHHHHHHhCCC--Cc------------cccCceeeeeE----EEEE---CC-cEEEEEeecCCCchh
Q psy16304 197 VPILVLGLDNAGKSSIIKRILGEP--II------------SLVPTVGFNRA----RVEY---GN-KYEVFLYDLGGSEDF 254 (537)
Q Consensus 197 ~~vgLVG~NGAGKSTLL~~L~G~~--~~------------~~~Pt~G~t~~----~i~i---~g-~~~i~~~D~~G~~~~ 254 (537)
-.++|+|..|+|||||++.|.... .. ....+.|+|.. .+.+ +| ++.+.+||++|+.++
T Consensus 5 rnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~dF 84 (599)
T 3cb4_D 5 RNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDF 84 (599)
T ss_dssp EEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchHH
Confidence 368999999999999999997421 00 01123454432 2333 22 478999999999998
Q ss_pred hHHHHhhhhccccCCCCCCCccceeeEEee
Q psy16304 255 RTIWKQYLGTVSQTPLGRPDSRTCQVYLIM 284 (537)
Q Consensus 255 r~~~~~~i~~v~Q~~~l~~~~~~~il~v~D 284 (537)
...+...+.. ++++++++|
T Consensus 85 ~~ev~~~l~~-----------aD~aILVVD 103 (599)
T 3cb4_D 85 SYEVSRSLAA-----------CEGALLVVD 103 (599)
T ss_dssp HHHHHHHHHH-----------CSEEEEEEE
T ss_pred HHHHHHHHHH-----------CCEEEEEEE
Confidence 8777777776 899999999
No 452
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=96.14 E-value=8.5e-05 Score=69.47 Aligned_cols=109 Identities=18% Similarity=0.237 Sum_probs=75.3
Q ss_pred CCccEEEeccCccCccchhhhhcCCCc-eeeeccccc-ccceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEE
Q psy16304 309 RSVPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGF-NRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLV 385 (537)
Q Consensus 309 ~~~~L~llGl~~~gKs~li~~LSgG~r-qrvs~ti~l-a~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlV 385 (537)
....+.++|..++||+++++.|.++.. ....++.+- ....+..++ ...+.+|||+|.+.+...+..+++..+++++|
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv 108 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 108 (204)
Confidence 345678999999999999999998762 233333331 111222222 24566999999998888999999999999999
Q ss_pred EeCCCcchhhhhh-hhhh--c-C--CcEEEEeccc-chh
Q psy16304 386 SHSLSGRPDDRCQ-VYLM--S-C--NCQVYLISAK-NLS 417 (537)
Q Consensus 386 vdshd~~~~~~~~-i~ll--~-~--G~ii~~g~nk-dl~ 417 (537)
+|..+..+++... .|+. . . +.++...+|| |+.
T Consensus 109 ~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~ 147 (204)
T 3th5_A 109 FSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 147 (204)
Confidence 9988888777654 3322 1 1 5566677777 663
No 453
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=97.07 E-value=0.00046 Score=80.69 Aligned_cols=81 Identities=15% Similarity=0.113 Sum_probs=51.3
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCC-------C---c-----cccCceeeeeE--EEEEC-CcEEEEEeecCCCchhhH
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEP-------I---I-----SLVPTVGFNRA--RVEYG-NKYEVFLYDLGGSEDFRT 256 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~-------~---~-----~~~Pt~G~t~~--~i~i~-g~~~i~~~D~~G~~~~r~ 256 (537)
+..+|+++|..|+|||||++.|++.. + . ....+.|+|.+ .+.+. ++..+.+||++|++++..
T Consensus 295 ~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~~ 374 (1289)
T 3avx_A 295 PHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVK 374 (1289)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHHH
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHHH
Confidence 34679999999999999999998630 0 0 11235565443 12232 248899999999988765
Q ss_pred HHHhhhhccccCCCCCCCccceeeEEeecC
Q psy16304 257 IWKQYLGTVSQTPLGRPDSRTCQVYLIMCG 286 (537)
Q Consensus 257 ~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds~ 286 (537)
.+...+.. ++++++++|+.
T Consensus 375 ~mi~gas~-----------AD~aILVVDAt 393 (1289)
T 3avx_A 375 NMITGAAQ-----------MDGAILVVAAT 393 (1289)
T ss_dssp HHHHTSCC-----------CSEEEEEEETT
T ss_pred HHHHHHhh-----------CCEEEEEEcCC
Confidence 44444443 89999999943
No 454
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=97.07 E-value=0.0011 Score=74.43 Aligned_cols=80 Identities=18% Similarity=0.131 Sum_probs=54.7
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCC--Cc---ccc---------C---ceeeee----EEEEECC------cEEEEEee
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEP--II---SLV---------P---TVGFNR----ARVEYGN------KYEVFLYD 247 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~--~~---~~~---------P---t~G~t~----~~i~i~g------~~~i~~~D 247 (537)
+-.+++|+|..|+|||||++.|.... +. ... + ..|+|. ..+.+.+ .+.+.+||
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liD 88 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIID 88 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEe
Confidence 34679999999999999999995320 00 000 0 223222 2333332 28899999
Q ss_pred cCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeec
Q psy16304 248 LGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMC 285 (537)
Q Consensus 248 ~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds 285 (537)
++|+.++...+...+.. ++++++++|+
T Consensus 89 TPG~~df~~~~~~~l~~-----------aD~aIlVvDa 115 (704)
T 2rdo_7 89 TPGHVDFTIEVERSMRV-----------LDGAVMVYCA 115 (704)
T ss_pred CCCccchHHHHHHHHHH-----------CCEEEEEEeC
Confidence 99999887777776666 8999999993
No 455
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=97.06 E-value=0.00017 Score=79.62 Aligned_cols=79 Identities=22% Similarity=0.329 Sum_probs=51.2
Q ss_pred CCeEEEEeCCCCcHHHHHHHHhCCCCc-----cccCceeeeeEEEEE--------CCc-------EEEEEeecCCCchhh
Q psy16304 196 SVPILVLGLDNAGKSSIIKRILGEPII-----SLVPTVGFNRARVEY--------GNK-------YEVFLYDLGGSEDFR 255 (537)
Q Consensus 196 G~~vgLVG~NGAGKSTLL~~L~G~~~~-----~~~Pt~G~t~~~i~i--------~g~-------~~i~~~D~~G~~~~r 255 (537)
-.+++|+|..|+|||||++.|.+..+. .+.++.|.+.-.... .++ ..+.+|||+|++++.
T Consensus 5 ~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F~ 84 (594)
T 1g7s_A 5 SPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFT 84 (594)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCT
T ss_pred CcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHHH
Confidence 467999999999999999999875322 123455522111100 011 258999999998776
Q ss_pred HHHHhhhhccccCCCCCCCccceeeEEeec
Q psy16304 256 TIWKQYLGTVSQTPLGRPDSRTCQVYLIMC 285 (537)
Q Consensus 256 ~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds 285 (537)
..+...+. .++++++++|+
T Consensus 85 ~~~~r~~~-----------~aD~aILVvDa 103 (594)
T 1g7s_A 85 TLRKRGGA-----------LADLAILIVDI 103 (594)
T ss_dssp TSBCSSSB-----------SCSEEEEEEET
T ss_pred HHHHHHHh-----------hCCEEEEEEEC
Confidence 44333322 38999999993
No 456
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.06 E-value=0.00022 Score=64.79 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=22.9
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGE 219 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~ 219 (537)
.|..++|+|++||||||+.++|++.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999999999986
No 457
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.04 E-value=0.00073 Score=61.75 Aligned_cols=106 Identities=22% Similarity=0.284 Sum_probs=67.1
Q ss_pred ccEEEeccCccCccchhhhhcCCCce-eeeccc--ccccceeccCCceEEEEEecCchhhH------HHHHHHHHh--cC
Q psy16304 311 VPILVLGLDNAGKSSIIKRILGEPII-SLVPTV--GFNRARVEYGNKYEVFLYDLGGSEDF------RTIWKQYLG--TV 379 (537)
Q Consensus 311 ~~L~llGl~~~gKs~li~~LSgG~rq-rvs~ti--~la~all~~~e~p~lllLDT~Gl~~~------~~l~~~~~~--~~ 379 (537)
..+.++|..++||+++++.|.++... ...++. ......+..++ ..+.+|||+|+..+ ..++..++. ..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 86 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG-EKFKVVDLPGVYSLTANSIDEIIARDYIINEKP 86 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT-EEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC-cEEEEEECCCcCccccccHHHHHHHHHHhccCC
Confidence 45779999999999999999987521 111111 12222333344 78999999998543 245666664 47
Q ss_pred CEEEEEEeCCCcchhhhhhhhhhcCCcEEEEeccc-chh
Q psy16304 380 SQTLLVSHSLSGRPDDRCQVYLMSCNCQVYLISAK-NLS 417 (537)
Q Consensus 380 ~~vIlVvdshd~~~~~~~~i~ll~~G~ii~~g~nk-dl~ 417 (537)
+++++|+|..+..........+...+.++...+|| |+.
T Consensus 87 ~~~i~v~d~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 125 (188)
T 2wjg_A 87 DLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDLA 125 (188)
T ss_dssp SEEEEEEEGGGHHHHHHHHHHHHTTTCCEEEEEECHHHH
T ss_pred CEEEEEecchhHHHHHHHHHHHHhcCCCEEEEEEhhhcc
Confidence 88999997765433222222334456667777777 664
No 458
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=97.03 E-value=0.00068 Score=63.96 Aligned_cols=107 Identities=19% Similarity=0.196 Sum_probs=71.0
Q ss_pred CccEEEeccCccCccchhhhhcCCC-ceeeecccccccce----ec-cCCceEEEEEecCch----------hhHHHHHH
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFNRAR----VE-YGNKYEVFLYDLGGS----------EDFRTIWK 373 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la~al----l~-~~e~p~lllLDT~Gl----------~~~~~l~~ 373 (537)
...+.++|..++||+++++.|.++. ...+..+.+.+... +. .++ ..+.+|||+|. +.+..++.
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 107 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAE-PVAHLVDLPGYGYAEVPGAAKAHWEQLLS 107 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTS-CSEEEEECCCCCSSCCCSTHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCC-CcEEEEcCCCCCcccCChhhHHHHHHHHH
Confidence 4567899999999999999999987 33444444433322 11 123 68999999994 45566777
Q ss_pred HHHhc---CCEEEEEEeCCCcchhhhhh--hhhhcCCcEEEEeccc-chh
Q psy16304 374 QYLGT---VSQTLLVSHSLSGRPDDRCQ--VYLMSCNCQVYLISAK-NLS 417 (537)
Q Consensus 374 ~~~~~---~~~vIlVvdshd~~~~~~~~--i~ll~~G~ii~~g~nk-dl~ 417 (537)
.|++. .+++++|+|..+........ .++...+.++....|| |+.
T Consensus 108 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~ 157 (223)
T 4dhe_A 108 SYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKL 157 (223)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGS
T ss_pred HHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccC
Confidence 77776 44599999887754333222 3444456677777777 763
No 459
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=97.02 E-value=0.00063 Score=78.05 Aligned_cols=77 Identities=16% Similarity=0.188 Sum_probs=53.2
Q ss_pred CeEEEEeCCCCcHHHHHHHHhCCC------------Cccc---cCceeee----eEEEEEC---------------CcEE
Q psy16304 197 VPILVLGLDNAGKSSIIKRILGEP------------IISL---VPTVGFN----RARVEYG---------------NKYE 242 (537)
Q Consensus 197 ~~vgLVG~NGAGKSTLL~~L~G~~------------~~~~---~Pt~G~t----~~~i~i~---------------g~~~ 242 (537)
.+++|+|..|+|||||++.|.+.. +... ....|+| ...+.+. .+..
T Consensus 20 rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 99 (842)
T 1n0u_A 20 RNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFL 99 (842)
T ss_dssp EEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCce
Confidence 469999999999999999997531 1000 0011211 1123332 1588
Q ss_pred EEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEee
Q psy16304 243 VFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIM 284 (537)
Q Consensus 243 i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~D 284 (537)
+.+||++|+.++...+...+.. ++++++++|
T Consensus 100 i~liDTPG~~df~~~~~~~l~~-----------aD~ailVvD 130 (842)
T 1n0u_A 100 INLIDSPGHVDFSSEVTAALRV-----------TDGALVVVD 130 (842)
T ss_dssp EEEECCCCCCSSCHHHHHHHHT-----------CSEEEEEEE
T ss_pred EEEEECcCchhhHHHHHHHHHh-----------CCEEEEEEe
Confidence 9999999999988777777776 899999999
No 460
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.02 E-value=0.00018 Score=74.18 Aligned_cols=31 Identities=23% Similarity=0.141 Sum_probs=27.6
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG 229 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G 229 (537)
++.+++|+|++|||||||+|.|+|. ..++.|
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~----~~~~~~ 103 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKM----LTERGH 103 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH----HHHTTC
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH----hhhcCC
Confidence 4789999999999999999999997 666666
No 461
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.02 E-value=0.0011 Score=64.55 Aligned_cols=106 Identities=17% Similarity=0.108 Sum_probs=64.8
Q ss_pred CccEEEeccCccCccchhhhhcCCCceeee-----cccccccceeccCCceEEEEEecCch--------hhHHHHHHHHH
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEPIISLV-----PTVGFNRARVEYGNKYEVFLYDLGGS--------EDFRTIWKQYL 376 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~rqrvs-----~ti~la~all~~~e~p~lllLDT~Gl--------~~~~~l~~~~~ 376 (537)
...+.++|.+++||+++++.|.|....... .|.......+..++ ..+.+|||+|+ +.+...+..++
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~-~~i~liDTPG~~~~~~~~~~~~~~~i~~~~ 99 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK-CHVEVVDTPDIFSSQVSKTDPGCEERGHCY 99 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT-EEEEEEECCSCSSTTHHHHSTTSHHHHHHH
T ss_pred ceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC-cEEEEEECCCCCCCCCCcHHHHHHHHHHHH
Confidence 456789999999999999999988743321 12222223333344 78999999997 22222232222
Q ss_pred ----hcCCEEEEEEeCCCcchhhhhh-hhhhc------CCcEEEEeccc-ch
Q psy16304 377 ----GTVSQTLLVSHSLSGRPDDRCQ-VYLMS------CNCQVYLISAK-NL 416 (537)
Q Consensus 377 ----~~~~~vIlVvdshd~~~~~~~~-i~ll~------~G~ii~~g~nk-dl 416 (537)
...+++++|++.......+... .++.+ .+.++...+|+ |+
T Consensus 100 ~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl 151 (247)
T 3lxw_A 100 LLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDL 151 (247)
T ss_dssp HHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGG
T ss_pred HhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhc
Confidence 6788999999876432222211 22222 15678888888 55
No 462
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=97.01 E-value=0.0012 Score=72.63 Aligned_cols=78 Identities=23% Similarity=0.304 Sum_probs=49.7
Q ss_pred CeEEEEeCCCCcHHHHHHHHhCCC--Cc------c------ccCceeeee----EEEEEC---C-cEEEEEeecCCCchh
Q psy16304 197 VPILVLGLDNAGKSSIIKRILGEP--II------S------LVPTVGFNR----ARVEYG---N-KYEVFLYDLGGSEDF 254 (537)
Q Consensus 197 ~~vgLVG~NGAGKSTLL~~L~G~~--~~------~------~~Pt~G~t~----~~i~i~---g-~~~i~~~D~~G~~~~ 254 (537)
-.++|+|..|+|||||++.|.+.. .. . .....|+|. -.+.+. + .+.+.+||++|+.++
T Consensus 7 rnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~dF 86 (600)
T 2ywe_A 7 RNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDF 86 (600)
T ss_dssp EEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHhH
Confidence 368999999999999999996410 00 0 011234332 133332 2 378999999999998
Q ss_pred hHHHHhhhhccccCCCCCCCccceeeEEeec
Q psy16304 255 RTIWKQYLGTVSQTPLGRPDSRTCQVYLIMC 285 (537)
Q Consensus 255 r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds 285 (537)
...+...+.. ++++++++|+
T Consensus 87 ~~ev~r~l~~-----------aD~aILVVDa 106 (600)
T 2ywe_A 87 SYEVSRALAA-----------CEGALLLIDA 106 (600)
T ss_dssp HHHHHHHHHT-----------CSEEEEEEET
T ss_pred HHHHHHHHHh-----------CCEEEEEEEC
Confidence 8777776666 8999999993
No 463
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.01 E-value=0.00033 Score=67.06 Aligned_cols=26 Identities=15% Similarity=0.033 Sum_probs=24.4
Q ss_pred CCCCCeEEEEeCCCCcHHHHHHHHhC
Q psy16304 193 DFRSVPILVLGLDNAGKSSIIKRILG 218 (537)
Q Consensus 193 ~~~G~~vgLVG~NGAGKSTLL~~L~G 218 (537)
+.+|+.++|+|+||||||||++.|++
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHH
Confidence 44899999999999999999999998
No 464
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.00 E-value=6.3e-05 Score=74.01 Aligned_cols=32 Identities=13% Similarity=0.120 Sum_probs=27.6
Q ss_pred cccccCCC---CCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304 188 HLSLFDFR---SVPILVLGLDNAGKSSIIKRILGE 219 (537)
Q Consensus 188 ~~~l~~~~---G~~vgLVG~NGAGKSTLL~~L~G~ 219 (537)
.+++.+.+ |++++|+|++||||||+.++|++.
T Consensus 37 ~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 37 KKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp HHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHH
T ss_pred hhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 34566667 999999999999999999999875
No 465
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=96.97 E-value=9.4e-05 Score=79.87 Aligned_cols=78 Identities=18% Similarity=0.298 Sum_probs=51.4
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCCc-----cccCceeeeeEEEEECCcEEEEEeecCCCchhhHHHHhhhhccccCC
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPII-----SLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTP 269 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~-----~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~~r~~~~~~i~~v~Q~~ 269 (537)
+-.+++++|..|+|||||++.|.+..+. +...+.|. ..+.+++ ..+.+||++|++++...+....
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~--~~v~~~~-~~i~~iDTPGhe~f~~~~~~~~------- 72 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGA--YHVETEN-GMITFLDTPGHAAFTSMRARGA------- 72 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSC--CCCCTTS-SCCCEECCCTTTCCTTSBCSSS-------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEE--EEEEECC-EEEEEEECCCcHHHHHHHHHHH-------
Confidence 3467999999999999999999864221 11222231 1223333 6789999999987764333222
Q ss_pred CCCCCccceeeEEeecC
Q psy16304 270 LGRPDSRTCQVYLIMCG 286 (537)
Q Consensus 270 ~l~~~~~~~il~v~Ds~ 286 (537)
..++.+++++|++
T Consensus 73 ----~~aD~aILVVda~ 85 (501)
T 1zo1_I 73 ----QATDIVVLVVAAD 85 (501)
T ss_dssp ----BSCSSEEEEEETT
T ss_pred ----hhCCEEEEEeecc
Confidence 2388899999943
No 466
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.96 E-value=0.00047 Score=64.11 Aligned_cols=106 Identities=12% Similarity=0.151 Sum_probs=69.1
Q ss_pred ccEEEeccCccCccchhhhhcCCCceee--ecccccc--cceeccCC-ceEEEEEecCchhh-HHHHHHHHHhcCCEEEE
Q psy16304 311 VPILVLGLDNAGKSSIIKRILGEPIISL--VPTVGFN--RARVEYGN-KYEVFLYDLGGSED-FRTIWKQYLGTVSQTLL 384 (537)
Q Consensus 311 ~~L~llGl~~~gKs~li~~LSgG~rqrv--s~ti~la--~all~~~e-~p~lllLDT~Gl~~-~~~l~~~~~~~~~~vIl 384 (537)
..+.++|.+++||+++++.|.++...-. .++.+.. ...+..++ ...+.+|||.|.+. ...++..+++.+++.++
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~ 86 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLI 86 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCEEEE
Confidence 5678999999999999999986442111 1222211 12233343 24667899988854 33355777888899999
Q ss_pred EEeCCCcchhhhhhhhh---h----cCCcEEEEeccc-ch
Q psy16304 385 VSHSLSGRPDDRCQVYL---M----SCNCQVYLISAK-NL 416 (537)
Q Consensus 385 Vvdshd~~~~~~~~i~l---l----~~G~ii~~g~nk-dl 416 (537)
|+|..+..+++....|. . ..+.++...+|| |+
T Consensus 87 v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl 126 (192)
T 2cjw_A 87 VYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDL 126 (192)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTC
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhh
Confidence 99999998887765322 1 136677788888 66
No 467
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=96.93 E-value=0.0011 Score=65.02 Aligned_cols=106 Identities=22% Similarity=0.340 Sum_probs=72.7
Q ss_pred ccEEEeccCccCccchhhhhcCCCceeeecccccc----cceeccCCceEEEEEecCchhhHH------HHHHHHH--hc
Q psy16304 311 VPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN----RARVEYGNKYEVFLYDLGGSEDFR------TIWKQYL--GT 378 (537)
Q Consensus 311 ~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la----~all~~~e~p~lllLDT~Gl~~~~------~l~~~~~--~~ 378 (537)
..+.++|.+++||+++++.|.|+... +....+.+ ...+..++ ..+.+|||+|..... .+.+.|+ ..
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~~~~-~~~~pg~tv~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~ 83 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGTKQY-VANWPGVTVEKKEGVFTYKG-YTINLIDLPGTYSLGYSSIDEKIARDYLLKGD 83 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTTCEE-EEECTTSCCEEEEEEEEETT-EEEEEEECCCCSSCCSSSHHHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCCc-ccCCCCceEEEEEEEEEECC-eEEEEEECCCcCccCCCCHHHHHHHHHHhhcC
Confidence 45779999999999999999987632 32222322 22333334 789999999984332 2335555 46
Q ss_pred CCEEEEEEeCCCcchhhhhhhhhhcCCcEEEEeccc-chhh
Q psy16304 379 VSQTLLVSHSLSGRPDDRCQVYLMSCNCQVYLISAK-NLSN 418 (537)
Q Consensus 379 ~~~vIlVvdshd~~~~~~~~i~ll~~G~ii~~g~nk-dl~~ 418 (537)
.+++++|+|..+..........+.+.+.++....|+ |+..
T Consensus 84 ~d~ii~V~D~t~~~~~~~~~~~l~~~~~pvilv~NK~Dl~~ 124 (258)
T 3a1s_A 84 ADLVILVADSVNPEQSLYLLLEILEMEKKVILAMTAIDEAK 124 (258)
T ss_dssp CSEEEEEEETTSCHHHHHHHHHHHTTTCCEEEEEECHHHHH
T ss_pred CCEEEEEeCCCchhhHHHHHHHHHhcCCCEEEEEECcCCCC
Confidence 789999999888765544445556678888888888 7643
No 468
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=96.92 E-value=0.00027 Score=73.40 Aligned_cols=58 Identities=29% Similarity=0.347 Sum_probs=41.2
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCC-----CCccccCceeeeeEEEEECCcEEEEEeecCCCc
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGE-----PIISLVPTVGFNRARVEYGNKYEVFLYDLGGSE 252 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~-----~~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~ 252 (537)
++..++++|.+|+|||||+|.|.|. ......+..|+|++...+.-+..+.++|++|..
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~ 223 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESGATLYDTPGII 223 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECSTTCEEEECCSCC
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCCCeEEEeCCCcC
Confidence 4568999999999999999999985 223334555666655544311236889999975
No 469
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.89 E-value=0.00057 Score=64.29 Aligned_cols=28 Identities=21% Similarity=0.341 Sum_probs=25.7
Q ss_pred cCCCCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304 192 FDFRSVPILVLGLDNAGKSSIIKRILGE 219 (537)
Q Consensus 192 ~~~~G~~vgLVG~NGAGKSTLL~~L~G~ 219 (537)
.+.+|.+++|+|++||||||+.+.|.+.
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3557899999999999999999999997
No 470
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.89 E-value=0.00029 Score=63.53 Aligned_cols=25 Identities=28% Similarity=0.431 Sum_probs=24.1
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGE 219 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~ 219 (537)
+|+.++|+|+||+|||||++++++.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999999999997
No 471
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.88 E-value=0.00032 Score=70.59 Aligned_cols=32 Identities=19% Similarity=0.279 Sum_probs=29.0
Q ss_pred CCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304 194 FRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG 229 (537)
Q Consensus 194 ~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G 229 (537)
.+|.+++|+|+|||||||++..|++. +.++.|
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~----l~~~~G 134 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAI----SMLEKH 134 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHH----HHHTTC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH----HHHhcC
Confidence 36899999999999999999999998 777777
No 472
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=96.87 E-value=0.00068 Score=72.88 Aligned_cols=106 Identities=17% Similarity=0.214 Sum_probs=74.7
Q ss_pred ccEEEeccCccCccchhhhhcCCCceeeecccccccc----eeccCCceEEEEEecCchh-hHH--------HHHHHHHh
Q psy16304 311 VPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRA----RVEYGNKYEVFLYDLGGSE-DFR--------TIWKQYLG 377 (537)
Q Consensus 311 ~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~a----ll~~~e~p~lllLDT~Gl~-~~~--------~l~~~~~~ 377 (537)
..+.++|.+++||+++++.|++.++..+....++++. .+..++ .++.+|||+|+. ... .....+++
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g-~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~ 322 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG-ILFRIVDTAGVRSETNDLVERLGIERTLQEIE 322 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT-EEEEEEESSCCCSSCCTTCCCCCHHHHHHHHH
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC-eEEEEEECCCccccchhhHHHHHHHHHHHHhh
Confidence 5678999999999999999999876656554444433 344455 789999999986 321 22345677
Q ss_pred cCCEEEEEEeCCCcchhhhhhhhhhcCCcEEEEeccc-chh
Q psy16304 378 TVSQTLLVSHSLSGRPDDRCQVYLMSCNCQVYLISAK-NLS 417 (537)
Q Consensus 378 ~~~~vIlVvdshd~~~~~~~~i~ll~~G~ii~~g~nk-dl~ 417 (537)
.++++++|+|..+..+.+...++-.-.++++....|| |+.
T Consensus 323 ~aD~vl~VvD~s~~~s~~~~~il~~l~~~piivV~NK~DL~ 363 (482)
T 1xzp_A 323 KADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDVV 363 (482)
T ss_dssp HCSEEEEEEETTSCCCHHHHHHHHHHTTSSEEEEEEECSSC
T ss_pred cccEEEEEecCCCCCCHHHHHHHHHhcCCCEEEEEECcccc
Confidence 8899999999888766554443222246667777777 763
No 473
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.86 E-value=0.00095 Score=66.27 Aligned_cols=105 Identities=19% Similarity=0.201 Sum_probs=72.1
Q ss_pred ccEEEeccCccCccchhhhhcCCCceeeeccccccc----ceeccCCceEEEEEecCchhhHH------HHHHHHHh--c
Q psy16304 311 VPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNR----ARVEYGNKYEVFLYDLGGSEDFR------TIWKQYLG--T 378 (537)
Q Consensus 311 ~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la~----all~~~e~p~lllLDT~Gl~~~~------~l~~~~~~--~ 378 (537)
..+.++|.+++||+++++.|.|+. +.+....+.+. ..+.. + ..+.+|||+|+..+. .+++.|+. .
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~~-~~v~~~pg~tv~~~~~~~~~-~-~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~ 80 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGHN-QRVGNWPGVTVERKSGLVKK-N-KDLEIQDLPGIYSMSPYSPEAKVARDYLLSQR 80 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCC-CCCCSSSCCCCSCEEEECTT-C-TTEEEEECCCCSCSSCSSHHHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCCcEEEEEEEEec-C-CeEEEEECCCcCccCCCChHHHHHHHHHhcCC
Confidence 357799999999999999999875 33333223222 12222 3 689999999985443 45677765 5
Q ss_pred CCEEEEEEeCCCcchhhhhhhhhhcCCcEEEEeccc-chhh
Q psy16304 379 VSQTLLVSHSLSGRPDDRCQVYLMSCNCQVYLISAK-NLSN 418 (537)
Q Consensus 379 ~~~vIlVvdshd~~~~~~~~i~ll~~G~ii~~g~nk-dl~~ 418 (537)
.+++++|+|..+..........+.+.|.++....|+ |+..
T Consensus 81 ~d~vi~V~D~t~~e~~~~~~~~l~~~~~p~ilv~NK~Dl~~ 121 (272)
T 3b1v_A 81 ADSILNVVDATNLERNLYLTTQLIETGIPVTIALNMIDVLD 121 (272)
T ss_dssp CSEEEEEEEGGGHHHHHHHHHHHHHTCSCEEEEEECHHHHH
T ss_pred CCEEEEEecCCchHhHHHHHHHHHhcCCCEEEEEEChhhCC
Confidence 789999998887654444334556678888888888 7643
No 474
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=96.85 E-value=0.00052 Score=68.85 Aligned_cols=109 Identities=18% Similarity=0.197 Sum_probs=76.4
Q ss_pred CCccEEEeccCccCccchhhhhcCCC-ceeeeccccc-ccceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEE
Q psy16304 309 RSVPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGF-NRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLV 385 (537)
Q Consensus 309 ~~~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~l-a~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlV 385 (537)
....+.++|..++||+++++.|.++. .....+|.+. ....+..++ ...+.+|||+|.+.+...+..+++..+++++|
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 233 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLIC 233 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEE
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEE
Confidence 34568899999999999999988776 2233333331 122222233 24566999999988888888888999999999
Q ss_pred EeCCCcchhhhhh-hhh---h--cCCcEEEEeccc-chh
Q psy16304 386 SHSLSGRPDDRCQ-VYL---M--SCNCQVYLISAK-NLS 417 (537)
Q Consensus 386 vdshd~~~~~~~~-i~l---l--~~G~ii~~g~nk-dl~ 417 (537)
+|..+..+++.+. .|+ . ..+.++...+|| |+.
T Consensus 234 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 272 (332)
T 2wkq_A 234 FSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLR 272 (332)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHH
T ss_pred EeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcc
Confidence 9999988877654 222 1 136677777777 763
No 475
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.83 E-value=0.00054 Score=69.36 Aligned_cols=35 Identities=17% Similarity=0.240 Sum_probs=30.3
Q ss_pred ccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304 191 LFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG 229 (537)
Q Consensus 191 l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G 229 (537)
+...+|.+++|+|+||+||||++..|++. +.+..|
T Consensus 99 ~~~~~~~vi~ivG~~GsGKTTl~~~LA~~----l~~~g~ 133 (306)
T 1vma_A 99 VPPEPPFVIMVVGVNGTGKTTSCGKLAKM----FVDEGK 133 (306)
T ss_dssp CCSSSCEEEEEECCTTSSHHHHHHHHHHH----HHHTTC
T ss_pred ccCCCCeEEEEEcCCCChHHHHHHHHHHH----HHhcCC
Confidence 34557899999999999999999999998 777666
No 476
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=96.82 E-value=0.00021 Score=78.87 Aligned_cols=78 Identities=23% Similarity=0.141 Sum_probs=37.5
Q ss_pred CCeEEEEeCCCCcHHHHHHHHhCCCCcc------------------------------ccCceeeeeEE----EEECCcE
Q psy16304 196 SVPILVLGLDNAGKSSIIKRILGEPIIS------------------------------LVPTVGFNRAR----VEYGNKY 241 (537)
Q Consensus 196 G~~vgLVG~NGAGKSTLL~~L~G~~~~~------------------------------~~Pt~G~t~~~----i~i~g~~ 241 (537)
-.+|+++|..|+|||||++.|.+..... .....|+|.+. +... +.
T Consensus 177 ~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~-~~ 255 (592)
T 3mca_A 177 VVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD-KK 255 (592)
T ss_dssp EEEEEEECCSSSTHHHHHHHHHHHHHCC----------------------------------------------------
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC-Ce
Confidence 3569999999999999999995310000 00123444322 2233 37
Q ss_pred EEEEeecCCCchhhHHHHhhhhccccCCCCCCCccceeeEEeec
Q psy16304 242 EVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMC 285 (537)
Q Consensus 242 ~i~~~D~~G~~~~r~~~~~~i~~v~Q~~~l~~~~~~~il~v~Ds 285 (537)
.+.+||++|+.++...+...+. .++++++++|+
T Consensus 256 ~i~iiDTPGh~~f~~~~~~~~~-----------~aD~alLVVDa 288 (592)
T 3mca_A 256 IYEIGDAPGHRDFISGMIAGAS-----------SADFAVLVVDS 288 (592)
T ss_dssp ---CCEEESSSEEEEECCC------------------CCSEEEE
T ss_pred EEEEEECCChHHHHHHHHHHHh-----------hCCEEEEEEEC
Confidence 8999999999866532222222 37888999993
No 477
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.80 E-value=0.0015 Score=60.71 Aligned_cols=107 Identities=20% Similarity=0.347 Sum_probs=73.5
Q ss_pred ccEEEeccCccCccchhhhhcCCCce-eeecccccc--cceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304 311 VPILVLGLDNAGKSSIIKRILGEPII-SLVPTVGFN--RARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVS 386 (537)
Q Consensus 311 ~~L~llGl~~~gKs~li~~LSgG~rq-rvs~ti~la--~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVv 386 (537)
..+.++|..++||+++++.|.|+... ...++.+.. ...+..++ +..+.+|||+|.+.+..++..+++..+++++|+
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 85 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVY 85 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEE
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEE
Confidence 45679999999999999999998732 233343322 22233343 246778999999877777888888889999999
Q ss_pred eCCCcchhhhhhhhhh------cCCcEEEEeccc-chh
Q psy16304 387 HSLSGRPDDRCQVYLM------SCNCQVYLISAK-NLS 417 (537)
Q Consensus 387 dshd~~~~~~~~i~ll------~~G~ii~~g~nk-dl~ 417 (537)
|..+..+++....|+- ..+.++....++ |+.
T Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~ 123 (199)
T 2f9l_A 86 DIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLR 123 (199)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred ECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccc
Confidence 9888877766543321 235666666777 764
No 478
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.78 E-value=0.00028 Score=77.07 Aligned_cols=34 Identities=24% Similarity=0.433 Sum_probs=30.5
Q ss_pred cCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304 192 FDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG 229 (537)
Q Consensus 192 ~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G 229 (537)
...+|+.++|+|+||||||||+++|++. +.|+.|
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~----L~~~~G 398 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAAR----LMEMGG 398 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHH----HHTTCS
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHh----hcccCC
Confidence 3558999999999999999999999998 888775
No 479
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.77 E-value=0.00041 Score=72.26 Aligned_cols=32 Identities=16% Similarity=0.091 Sum_probs=28.4
Q ss_pred cccccCCCCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304 188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGE 219 (537)
Q Consensus 188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~ 219 (537)
.+++.+.+|..++|+||||+|||||+++|+|.
T Consensus 161 ~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 161 CMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp HHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred hcccccCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34566789999999999999999999999985
No 480
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.76 E-value=0.00037 Score=66.26 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=22.0
Q ss_pred CCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304 196 SVPILVLGLDNAGKSSIIKRILGE 219 (537)
Q Consensus 196 G~~vgLVG~NGAGKSTLL~~L~G~ 219 (537)
+.+++|+|++||||||+.+.|.+.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999875
No 481
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=96.71 E-value=0.00071 Score=70.20 Aligned_cols=59 Identities=27% Similarity=0.339 Sum_probs=38.9
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCC------CccccCceeeeeEEEEECCcEEEEEeecCCCch
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEP------IISLVPTVGFNRARVEYGNKYEVFLYDLGGSED 253 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~------~~~~~Pt~G~t~~~i~i~g~~~i~~~D~~G~~~ 253 (537)
++..++++|.+|+|||||+|.|.|.. .....+..|+|+....+.-+..+.++|++|...
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~ 223 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEESSLYDTPGIIN 223 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSSCEEEECCCBCC
T ss_pred ccceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCCeEEEeCCCcCc
Confidence 46789999999999999999999852 222456667666554432112378899999753
No 482
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=96.70 E-value=0.0014 Score=72.01 Aligned_cols=59 Identities=22% Similarity=0.271 Sum_probs=39.5
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHhCCCCc-cccC-ceeeeeEEEEE------CCcEEEEEeecCCCch
Q psy16304 195 RSVPILVLGLDNAGKSSIIKRILGEPII-SLVP-TVGFNRARVEY------GNKYEVFLYDLGGSED 253 (537)
Q Consensus 195 ~G~~vgLVG~NGAGKSTLL~~L~G~~~~-~~~P-t~G~t~~~i~i------~g~~~i~~~D~~G~~~ 253 (537)
+-.+|+|+|++|+|||||+|.|+|.... .+.. +.+.|.....+ .++..+.++||+|...
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 3467999999999999999999997532 1111 11222224332 2347899999999864
No 483
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.70 E-value=0.00054 Score=69.75 Aligned_cols=38 Identities=11% Similarity=0.222 Sum_probs=32.3
Q ss_pred cccccCCCCCeEEEEeCCCCcHHHHHHHHhCCCCccccCcee
Q psy16304 188 HLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG 229 (537)
Q Consensus 188 ~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~~~~~~~Pt~G 229 (537)
.+++...++.+++++|+||+||||++..|++. +.+..|
T Consensus 97 ~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~----l~~~g~ 134 (320)
T 1zu4_A 97 RIDFKENRLNIFMLVGVNGTGKTTSLAKMANY----YAELGY 134 (320)
T ss_dssp CCCCCTTSCEEEEEESSTTSSHHHHHHHHHHH----HHHTTC
T ss_pred CccccCCCCeEEEEECCCCCCHHHHHHHHHHH----HHHCCC
Confidence 34555678999999999999999999999998 777656
No 484
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.69 E-value=0.00075 Score=63.52 Aligned_cols=26 Identities=19% Similarity=0.029 Sum_probs=24.3
Q ss_pred CCCCCeEEEEeCCCCcHHHHHHHHhC
Q psy16304 193 DFRSVPILVLGLDNAGKSSIIKRILG 218 (537)
Q Consensus 193 ~~~G~~vgLVG~NGAGKSTLL~~L~G 218 (537)
+.+|+.++|+|+||+|||||++.|++
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999999997
No 485
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.69 E-value=0.0017 Score=63.89 Aligned_cols=105 Identities=19% Similarity=0.252 Sum_probs=70.8
Q ss_pred ccEEEeccCccCccchhhhhcCCCceeeecccccc----cceeccCCceEEEEEecCchhhHH------HHHHHHH--hc
Q psy16304 311 VPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFN----RARVEYGNKYEVFLYDLGGSEDFR------TIWKQYL--GT 378 (537)
Q Consensus 311 ~~L~llGl~~~gKs~li~~LSgG~rqrvs~ti~la----~all~~~e~p~lllLDT~Gl~~~~------~l~~~~~--~~ 378 (537)
..+.++|.+++||+++++.|.|... .+....+.+ ...+..++ ..+.+|||+|...+. .+++.|+ ..
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~~-~~~~~~~~t~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 81 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLRQ-HVGNWPGVTVEKKEGIMEYRE-KEFLVVDLPGIYSLTAHSIDELIARNFILDGN 81 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTCE-EEEECTTSSCEEEEEEEEETT-EEEEEEECCCCSCCCSSCHHHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeEEEeeEEEEEECC-ceEEEEeCCCccccccCCHHHHHHHHhhhccC
Confidence 3567999999999999999998764 443333322 22333344 789999999983322 2566666 56
Q ss_pred CCEEEEEEeCCCcchhhhhhhhhhcCC-cEEEEeccc-chh
Q psy16304 379 VSQTLLVSHSLSGRPDDRCQVYLMSCN-CQVYLISAK-NLS 417 (537)
Q Consensus 379 ~~~vIlVvdshd~~~~~~~~i~ll~~G-~ii~~g~nk-dl~ 417 (537)
.+++++|+|..+..........+.+.+ .++....|+ |+.
T Consensus 82 ~d~vi~v~D~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 122 (271)
T 3k53_A 82 ADVIVDIVDSTCLMRNLFLTLELFEMEVKNIILVLNKFDLL 122 (271)
T ss_dssp CSEEEEEEEGGGHHHHHHHHHHHHHTTCCSEEEEEECHHHH
T ss_pred CcEEEEEecCCcchhhHHHHHHHHhcCCCCEEEEEEChhcC
Confidence 789999998887543333334455566 777788888 764
No 486
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=96.67 E-value=0.0012 Score=71.77 Aligned_cols=108 Identities=19% Similarity=0.290 Sum_probs=69.2
Q ss_pred CccEEEeccCccCccchhhhhcCCC-ceeeecccccccc--------eeccCC---ceEEEEEecCchhhHHHHHHHHHh
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEP-IISLVPTVGFNRA--------RVEYGN---KYEVFLYDLGGSEDFRTIWKQYLG 377 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~-rqrvs~ti~la~a--------ll~~~e---~p~lllLDT~Gl~~~~~l~~~~~~ 377 (537)
...+.++|.+++||+++++.|+++. .....+|++.... .+..+. ...+.+|||+|.+.+...+..+++
T Consensus 41 ~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~l~ 120 (535)
T 3dpu_A 41 EIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFMT 120 (535)
T ss_dssp EEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHHHcc
Confidence 4568899999999999999999887 3444455553322 121111 278999999999887778888898
Q ss_pred cCCEEEEEEeCCCcchhhhhhhhhh--cCCcEEEEeccc-chh
Q psy16304 378 TVSQTLLVSHSLSGRPDDRCQVYLM--SCNCQVYLISAK-NLS 417 (537)
Q Consensus 378 ~~~~vIlVvdshd~~~~~~~~i~ll--~~G~ii~~g~nk-dl~ 417 (537)
..+++++|+|..+.+........+. ..+.++...+|| |+.
T Consensus 121 ~~d~ii~V~D~s~~~~~~~~~~~l~~~~~~~pvilV~NK~Dl~ 163 (535)
T 3dpu_A 121 RSSVYMLLLDSRTDSNKHYWLRHIEKYGGKSPVIVVMNKIDEN 163 (535)
T ss_dssp SSEEEEEEECGGGGGGHHHHHHHHHHHSSSCCEEEEECCTTTC
T ss_pred CCcEEEEEEeCCCchhHHHHHHHHHHhCCCCCEEEEEECCCcc
Confidence 9999999998766533332222222 234677777777 764
No 487
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.66 E-value=0.00059 Score=70.57 Aligned_cols=31 Identities=16% Similarity=0.091 Sum_probs=0.0
Q ss_pred ccccccCCCCCeEEEEeCCCCcHHHHHHHHhC
Q psy16304 187 THLSLFDFRSVPILVLGLDNAGKSSIIKRILG 218 (537)
Q Consensus 187 ~~~~l~~~~G~~vgLVG~NGAGKSTLL~~L~G 218 (537)
..+++...+| +++|+||||+||||++.+|.+
T Consensus 18 ~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 18 APGTLNFPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp CSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred eeeEEEEcCC-eEEEECCCCCChhHHHHHHHH
No 488
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.64 E-value=0.0016 Score=59.35 Aligned_cols=103 Identities=17% Similarity=0.286 Sum_probs=61.7
Q ss_pred cEEEeccCccCccchhhhhcCCCce-eeecccccccceeccCCceEEEEEecCc-----------hhhHHHHHHHHHhc-
Q psy16304 312 PILVLGLDNAGKSSIIKRILGEPII-SLVPTVGFNRARVEYGNKYEVFLYDLGG-----------SEDFRTIWKQYLGT- 378 (537)
Q Consensus 312 ~L~llGl~~~gKs~li~~LSgG~rq-rvs~ti~la~all~~~e~p~lllLDT~G-----------l~~~~~l~~~~~~~- 378 (537)
.+.++|..++||+++++.|.++... ...++.......+..+ .+.+|||+| .+.+...+..+++.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWK---NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDN 79 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEET---TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEecC---CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhh
Confidence 4678999999999999999988621 1112222222222212 588999999 66777778777765
Q ss_pred CCEEEEEEeCCCcchhhhh-h---------------hhhhcCCcEEEEeccc-chh
Q psy16304 379 VSQTLLVSHSLSGRPDDRC-Q---------------VYLMSCNCQVYLISAK-NLS 417 (537)
Q Consensus 379 ~~~vIlVvdshd~~~~~~~-~---------------i~ll~~G~ii~~g~nk-dl~ 417 (537)
.++++++++..|..++... . ..+...+.++....|| |+.
T Consensus 80 ~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 135 (190)
T 2cxx_A 80 AKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKI 135 (190)
T ss_dssp GGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGC
T ss_pred hccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhcc
Confidence 5544444444444444332 1 1112346667777777 663
No 489
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.62 E-value=0.00077 Score=65.50 Aligned_cols=28 Identities=21% Similarity=0.401 Sum_probs=24.0
Q ss_pred cccCCCCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304 190 SLFDFRSVPILVLGLDNAGKSSIIKRILGE 219 (537)
Q Consensus 190 ~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~ 219 (537)
++.+.+| ++|+||||+|||||+++|++.
T Consensus 45 ~~~~~~g--~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 45 GARIPKG--VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp TCCCCSE--EEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCCe--EEEECCCCCCHHHHHHHHHHH
Confidence 3445566 999999999999999999987
No 490
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.60 E-value=0.00088 Score=68.21 Aligned_cols=24 Identities=21% Similarity=0.138 Sum_probs=22.1
Q ss_pred CCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304 196 SVPILVLGLDNAGKSSIIKRILGE 219 (537)
Q Consensus 196 G~~vgLVG~NGAGKSTLL~~L~G~ 219 (537)
..++||+|+||||||||+++|.+.
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999987
No 491
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.60 E-value=0.00098 Score=62.50 Aligned_cols=22 Identities=18% Similarity=0.125 Sum_probs=20.6
Q ss_pred eEEEEeCCCCcHHHHHHHHhCC
Q psy16304 198 PILVLGLDNAGKSSIIKRILGE 219 (537)
Q Consensus 198 ~vgLVG~NGAGKSTLL~~L~G~ 219 (537)
+++|+|++||||||+.++|++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l 25 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL 25 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 6899999999999999999985
No 492
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.59 E-value=0.0019 Score=59.84 Aligned_cols=107 Identities=20% Similarity=0.356 Sum_probs=73.3
Q ss_pred ccEEEeccCccCccchhhhhcCCCc-eeeeccccc--ccceeccCC-ceEEEEEecCchhhHHHHHHHHHhcCCEEEEEE
Q psy16304 311 VPILVLGLDNAGKSSIIKRILGEPI-ISLVPTVGF--NRARVEYGN-KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVS 386 (537)
Q Consensus 311 ~~L~llGl~~~gKs~li~~LSgG~r-qrvs~ti~l--a~all~~~e-~p~lllLDT~Gl~~~~~l~~~~~~~~~~vIlVv 386 (537)
..+.++|..++||+++++.|.++.. ....+|.+. ....+..++ +..+.+|||+|++.+..++..+++..++.++|+
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 109 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVY 109 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEE
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEE
Confidence 4577999999999999999998874 333344442 222333343 245667999999777777788888888999999
Q ss_pred eCCCcchhhhhhhhhh------cCCcEEEEeccc-chh
Q psy16304 387 HSLSGRPDDRCQVYLM------SCNCQVYLISAK-NLS 417 (537)
Q Consensus 387 dshd~~~~~~~~i~ll------~~G~ii~~g~nk-dl~ 417 (537)
|..+..+++.+..|+- ..+.++....++ |+.
T Consensus 110 d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~ 147 (191)
T 1oix_A 110 DIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLR 147 (191)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred ECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 9888877665543321 134556666666 663
No 493
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.51 E-value=0.0009 Score=70.65 Aligned_cols=66 Identities=11% Similarity=0.002 Sum_probs=43.0
Q ss_pred hhhhcCCCceeeecccccccceecc--CCceEEEEEe--cCchhhHH--HHHHHHHh--cCCEEEEEEeCCCcchhhhhh
Q psy16304 327 IKRILGEPIISLVPTVGFNRARVEY--GNKYEVFLYD--LGGSEDFR--TIWKQYLG--TVSQTLLVSHSLSGRPDDRCQ 398 (537)
Q Consensus 327 i~~LSgG~rqrvs~ti~la~all~~--~e~p~lllLD--T~Gl~~~~--~l~~~~~~--~~~~vIlVvdshd~~~~~~~~ 398 (537)
+..|||||++++ +++.+++.. .+ |++++|| +++++... .+++.+.+ ..+..++++ +|+......++
T Consensus 331 ~~~lS~Gq~~~~----~la~~la~~~~~~-~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~-th~~~~~~~~d 404 (430)
T 1w1w_A 331 MEYLSGGEKTVA----ALALLFAINSYQP-SPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVI-SLKNTMFEKSD 404 (430)
T ss_dssp GGGSCHHHHHHH----HHHHHHHHHTSSC-CSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEE-CSCHHHHTTCS
T ss_pred cccCCcchHHHH----HHHHHHHHhcCCC-CCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEE-ECCHHHHHhCC
Confidence 567999999999 888877642 23 8999999 99994332 22232222 124567777 78866554443
No 494
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.51 E-value=0.001 Score=65.74 Aligned_cols=28 Identities=21% Similarity=0.401 Sum_probs=24.2
Q ss_pred cccCCCCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304 190 SLFDFRSVPILVLGLDNAGKSSIIKRILGE 219 (537)
Q Consensus 190 ~l~~~~G~~vgLVG~NGAGKSTLL~~L~G~ 219 (537)
++.+.+| ++|+||||+|||||+++|++.
T Consensus 69 ~~~~~~g--vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 69 GARIPKG--VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp TCCCCCE--EEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCCe--EEEECCCcChHHHHHHHHHHH
Confidence 3445567 999999999999999999997
No 495
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.50 E-value=0.0079 Score=58.42 Aligned_cols=80 Identities=19% Similarity=0.212 Sum_probs=53.9
Q ss_pred CccEEEeccCccCccchhhhhcCCCceee--ec---ccccccceeccCCceEEEEEecCchhhH-----------HHHHH
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEPIISL--VP---TVGFNRARVEYGNKYEVFLYDLGGSEDF-----------RTIWK 373 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~rqrv--s~---ti~la~all~~~e~p~lllLDT~Gl~~~-----------~~l~~ 373 (537)
...+.++|..++||+++++.|.++..... .+ |.......+..++ ..+.+|||+|+... ...+.
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~ 100 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN-REIVIIDTPDMFSWKDHCEALYKEVQRCYL 100 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT-EEEEEEECCGGGGSSCCCHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC-CEEEEEECcCCCCCCCCHHHHHHHHHHHHH
Confidence 45678999999999999999998763222 11 2222223333344 78999999998321 22223
Q ss_pred HHHhcCCEEEEEEeCCC
Q psy16304 374 QYLGTVSQTLLVSHSLS 390 (537)
Q Consensus 374 ~~~~~~~~vIlVvdshd 390 (537)
.+++..+++++|+|..+
T Consensus 101 ~~~~~~d~il~V~d~~~ 117 (260)
T 2xtp_A 101 LSAPGPHVLLLVTQLGR 117 (260)
T ss_dssp HHTTCCSEEEEEEETTC
T ss_pred hcCCCCcEEEEEEeCCC
Confidence 45677899999998875
No 496
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.50 E-value=0.00094 Score=66.06 Aligned_cols=27 Identities=15% Similarity=0.123 Sum_probs=24.5
Q ss_pred CCCCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304 193 DFRSVPILVLGLDNAGKSSIIKRILGE 219 (537)
Q Consensus 193 ~~~G~~vgLVG~NGAGKSTLL~~L~G~ 219 (537)
+.+|+.++|+|+||+|||||++.+++.
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 348999999999999999999999874
No 497
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.49 E-value=0.0055 Score=58.81 Aligned_cols=83 Identities=19% Similarity=0.155 Sum_probs=53.6
Q ss_pred CccEEEeccCccCccchhhhhcCCCceee-----ecccccccceeccCCceEEEEEecCch-----------hhHHHHHH
Q psy16304 310 SVPILVLGLDNAGKSSIIKRILGEPIISL-----VPTVGFNRARVEYGNKYEVFLYDLGGS-----------EDFRTIWK 373 (537)
Q Consensus 310 ~~~L~llGl~~~gKs~li~~LSgG~rqrv-----s~ti~la~all~~~e~p~lllLDT~Gl-----------~~~~~l~~ 373 (537)
...+.++|..++||+++++.|.|...... ..|.......+..++ ..+.+|||+|+ +.+...+.
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 107 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE-TELVVVDTPGIFDTEVPNAETSKEIIRCIL 107 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT-EEEEEEECCSCC-----CHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC-ceEEEEECCCccCCCCCHHHHHHHHHHHHH
Confidence 45678999999999999999998874221 111122222333344 78999999995 22333333
Q ss_pred HHHhcCCEEEEEEeCCCcch
Q psy16304 374 QYLGTVSQTLLVSHSLSGRP 393 (537)
Q Consensus 374 ~~~~~~~~vIlVvdshd~~~ 393 (537)
.+....+++++|++..+...
T Consensus 108 ~~~~~~~~~l~v~d~~~~~~ 127 (239)
T 3lxx_A 108 LTSPGPHALLLVVPLGRYTE 127 (239)
T ss_dssp HTTTCCSEEEEEEETTCCSS
T ss_pred hcCCCCcEEEEEeeCCCCCH
Confidence 44445689999998765443
No 498
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.47 E-value=0.00077 Score=68.70 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=21.9
Q ss_pred CeEEEEeCCCCcHHHHHHHHhCC
Q psy16304 197 VPILVLGLDNAGKSSIIKRILGE 219 (537)
Q Consensus 197 ~~vgLVG~NGAGKSTLL~~L~G~ 219 (537)
..++|+||||+|||||+++|+|.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 77999999999999999999997
No 499
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.47 E-value=0.0014 Score=61.70 Aligned_cols=26 Identities=38% Similarity=0.689 Sum_probs=23.8
Q ss_pred CCCCeEEEEeCCCCcHHHHHHHHhCC
Q psy16304 194 FRSVPILVLGLDNAGKSSIIKRILGE 219 (537)
Q Consensus 194 ~~G~~vgLVG~NGAGKSTLL~~L~G~ 219 (537)
.+|..++|+|++||||||+.+.|...
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHh
Confidence 37889999999999999999999875
No 500
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.46 E-value=0.0012 Score=61.82 Aligned_cols=22 Identities=23% Similarity=0.164 Sum_probs=20.6
Q ss_pred eEEEEeCCCCcHHHHHHHHhCC
Q psy16304 198 PILVLGLDNAGKSSIIKRILGE 219 (537)
Q Consensus 198 ~vgLVG~NGAGKSTLL~~L~G~ 219 (537)
+|+|+|+|||||||+.+.|++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFREL 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHHHC
Confidence 6899999999999999999984
Done!