RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16304
(537 letters)
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport
protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 187
Score = 85.8 bits (213), Expect = 1e-19
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 189 LSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDL 248
LF+ + ++++GLDNAGK++I+ + ++ PT+G N + N ++D+
Sbjct: 9 WRLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINN-TRFLMWDI 67
Query: 249 GGSEDFRTIWKQY 261
GG E R+ W Y
Sbjct: 68 GGQESLRSSWNTY 80
Score = 83.1 bits (206), Expect = 1e-18
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIW 372
++++GLDNAGK++I+ + ++ PT+G N + N ++D+GG E R+ W
Sbjct: 19 VIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINN-TRFLMWDIGGQESLRSSW 77
Query: 373 KQY 375
Y
Sbjct: 78 NTY 80
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 85.4 bits (212), Expect = 2e-19
Identities = 26/72 (36%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 190 SLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLG 249
+F + + IL++GLD AGK++I+ ++ I++ +PT+GFN VEY N ++D+G
Sbjct: 23 RIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN-ICFTVWDVG 81
Query: 250 GSEDFRTIWKQY 261
G + R +W+ Y
Sbjct: 82 GQDKIRPLWRHY 93
Score = 82.0 bits (203), Expect = 3e-18
Identities = 25/63 (39%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIW 372
IL++GLD AGK++I+ ++ I++ +PT+GFN VEY N ++D+GG + R +W
Sbjct: 32 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN-ICFTVWDVGGQDKIRPLW 90
Query: 373 KQY 375
+ Y
Sbjct: 91 RHY 93
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 84.2 bits (209), Expect = 5e-19
Identities = 25/63 (39%), Positives = 46/63 (73%), Gaps = 1/63 (1%)
Query: 199 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIW 258
+L+LGLDNAGK++I+K+ GE + ++ PT+GFN +E+ +++ ++D+GG + R+ W
Sbjct: 21 LLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRG-FKLNIWDVGGQKSLRSYW 79
Query: 259 KQY 261
+ Y
Sbjct: 80 RNY 82
Score = 84.2 bits (209), Expect = 5e-19
Identities = 25/63 (39%), Positives = 46/63 (73%), Gaps = 1/63 (1%)
Query: 313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIW 372
+L+LGLDNAGK++I+K+ GE + ++ PT+GFN +E+ +++ ++D+GG + R+ W
Sbjct: 21 LLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRG-FKLNIWDVGGQKSLRSYW 79
Query: 373 KQY 375
+ Y
Sbjct: 80 RNY 82
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 83.4 bits (207), Expect = 5e-19
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 191 LFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGG 250
R + IL+LGLD AGK++I+ R+ +++ +PT+GFN V Y N + ++DLGG
Sbjct: 2 SHMTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKN-LKFQVWDLGG 60
Query: 251 SEDFRTIWKQY 261
R W+ Y
Sbjct: 61 LTSIRPYWRCY 71
Score = 81.8 bits (203), Expect = 2e-18
Identities = 26/63 (41%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIW 372
IL+LGLD AGK++I+ R+ +++ +PT+GFN V Y N + ++DLGG R W
Sbjct: 10 ILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKN-LKFQVWDLGGLTSIRPYW 68
Query: 373 KQY 375
+ Y
Sbjct: 69 RCY 71
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without
magnesium, ARF family, RAS superfamily, G-domain,
signaling protein; HET: MES GDP; 1.70A {Mus musculus}
SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 83.4 bits (207), Expect = 7e-19
Identities = 25/63 (39%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Query: 199 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIW 258
IL+LGLDNAGK++++K++ E I + PT GFN V+ +++ ++D+GG R W
Sbjct: 19 ILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQG-FKLNVWDIGGQRKIRPYW 77
Query: 259 KQY 261
+ Y
Sbjct: 78 RSY 80
Score = 83.4 bits (207), Expect = 7e-19
Identities = 25/63 (39%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Query: 313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIW 372
IL+LGLDNAGK++++K++ E I + PT GFN V+ +++ ++D+GG R W
Sbjct: 19 ILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQG-FKLNVWDIGGQRKIRPYW 77
Query: 373 KQY 375
+ Y
Sbjct: 78 RSY 80
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 83.5 bits (207), Expect = 7e-19
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 199 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIW 258
++++GLDNAGK++I+ + ++ PT+G N + N ++D+GG E R+ W
Sbjct: 24 VIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINN-TRFLMWDIGGQESLRSSW 82
Query: 259 KQY 261
Y
Sbjct: 83 NTY 85
Score = 83.5 bits (207), Expect = 7e-19
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIW 372
++++GLDNAGK++I+ + ++ PT+G N + N ++D+GG E R+ W
Sbjct: 24 VIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINN-TRFLMWDIGGQESLRSSW 82
Query: 373 KQY 375
Y
Sbjct: 83 NTY 85
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 83.5 bits (207), Expect = 8e-19
Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 184 LLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEV 243
L T L R + +L+LGLDNAGK+SI+ R+ +++ VPTVG N ++Y N
Sbjct: 10 LKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQYKN-ISF 68
Query: 244 FLYDLGGSEDFRTIWKQYL 262
++DLGG R W+ Y
Sbjct: 69 EVWDLGGQTGVRPYWRCYF 87
Score = 81.1 bits (201), Expect = 6e-18
Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIW 372
+L+LGLDNAGK+SI+ R+ +++ VPTVG N ++Y N ++DLGG R W
Sbjct: 25 VLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQYKN-ISFEVWDLGGQTGVRPYW 83
Query: 373 KQYL 376
+ Y
Sbjct: 84 RCYF 87
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor,
protein transport-exchang complex; HET: GDP; 1.46A {Bos
taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A*
1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A*
1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A*
2a5f_A* 2j5x_A* 1e0s_A* ...
Length = 164
Score = 82.6 bits (205), Expect = 8e-19
Identities = 25/63 (39%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 199 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIW 258
IL++GLD AGK++I+ ++ I++ +PT+GFN VEY N ++D+GG + R +W
Sbjct: 3 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN-ISFTVWDVGGQDKIRPLW 61
Query: 259 KQY 261
+ Y
Sbjct: 62 RHY 64
Score = 82.6 bits (205), Expect = 8e-19
Identities = 25/63 (39%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIW 372
IL++GLD AGK++I+ ++ I++ +PT+GFN VEY N ++D+GG + R +W
Sbjct: 3 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN-ISFTVWDVGGQDKIRPLW 61
Query: 373 KQY 375
+ Y
Sbjct: 62 RHY 64
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding,
membrane trafficking, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Length = 188
Score = 82.6 bits (205), Expect = 1e-18
Identities = 22/74 (29%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 189 LSLFDFRSVPILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGNKYEVFLYD 247
+ + + ++GL +GK++ + I G+ ++PTVGFN ++ GN + L+D
Sbjct: 15 VPRGSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGN-VTIKLWD 73
Query: 248 LGGSEDFRTIWKQY 261
+GG FR++W++Y
Sbjct: 74 IGGQPRFRSMWERY 87
Score = 82.2 bits (204), Expect = 2e-18
Identities = 22/64 (34%), Positives = 41/64 (64%), Gaps = 2/64 (3%)
Query: 313 ILVLGLDNAGKSSIIKRI-LGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTI 371
+ ++GL +GK++ + I G+ ++PTVGFN ++ GN + L+D+GG FR++
Sbjct: 25 LTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGN-VTIKLWDIGGQPRFRSM 83
Query: 372 WKQY 375
W++Y
Sbjct: 84 WERY 87
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Length = 190
Score = 81.5 bits (202), Expect = 4e-18
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 199 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGN-KYEVFLYDLGGSEDFRTI 257
+L LGLDNAGK++++ + + + +L PT + GN K+ F DLGG R +
Sbjct: 26 LLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTF--DLGGHIQARRL 83
Query: 258 WKQYL 262
WK Y
Sbjct: 84 WKDYF 88
Score = 81.5 bits (202), Expect = 4e-18
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGN-KYEVFLYDLGGSEDFRTI 371
+L LGLDNAGK++++ + + + +L PT + GN K+ F DLGG R +
Sbjct: 26 LLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTF--DLGGHIQARRL 83
Query: 372 WKQYL 376
WK Y
Sbjct: 84 WKDYF 88
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 81.2 bits (201), Expect = 6e-18
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 199 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGN-KYEVFLYDLGGSEDFRTI 257
++ LGLDNAGK++++ + + + VPT+ + + F DLGG R +
Sbjct: 28 LVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTF--DLGGHIQARRV 85
Query: 258 WKQYL 262
WK YL
Sbjct: 86 WKNYL 90
Score = 81.2 bits (201), Expect = 6e-18
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGN-KYEVFLYDLGGSEDFRTI 371
++ LGLDNAGK++++ + + + VPT+ + + F DLGG R +
Sbjct: 28 LVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTF--DLGGHIQARRV 85
Query: 372 WKQYL 376
WK YL
Sbjct: 86 WKNYL 90
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein
binding; HET: GDP; 3.17A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 183
Score = 80.8 bits (200), Expect = 6e-18
Identities = 25/63 (39%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 199 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIW 258
IL+LGLD AGK++I+ R+ +++ PT+GFN + Y N ++ ++DLGG R W
Sbjct: 21 ILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKN-LKLNVWDLGGQTSIRPYW 79
Query: 259 KQY 261
+ Y
Sbjct: 80 RCY 82
Score = 80.8 bits (200), Expect = 6e-18
Identities = 25/63 (39%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIW 372
IL+LGLD AGK++I+ R+ +++ PT+GFN + Y N ++ ++DLGG R W
Sbjct: 21 ILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKN-LKLNVWDLGGQTSIRPYW 79
Query: 373 KQY 375
+ Y
Sbjct: 80 RCY 82
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GTP; 2.00A {Homo sapiens}
Length = 190
Score = 77.7 bits (192), Expect = 8e-17
Identities = 19/65 (29%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Query: 199 ILVLGLDNAGKSSIIKRILGE--PIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRT 256
+L LGLDN+GK++II ++ +++PT+GF+ + + + ++D+ G +R
Sbjct: 24 VLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSS-LSFTVFDMSGQGRYRN 82
Query: 257 IWKQY 261
+W+ Y
Sbjct: 83 LWEHY 87
Score = 77.7 bits (192), Expect = 8e-17
Identities = 19/65 (29%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Query: 313 ILVLGLDNAGKSSIIKRILGE--PIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRT 370
+L LGLDN+GK++II ++ +++PT+GF+ + + + ++D+ G +R
Sbjct: 24 VLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSS-LSFTVFDMSGQGRYRN 82
Query: 371 IWKQY 375
+W+ Y
Sbjct: 83 LWEHY 87
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 69.4 bits (170), Expect = 1e-13
Identities = 32/187 (17%), Positives = 65/187 (34%), Gaps = 30/187 (16%)
Query: 199 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIW 258
I++ G N+GK+S++ + + + V + A G+ + D G R
Sbjct: 15 IIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTLV--DFPGHVKLRYKL 72
Query: 259 KQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSA--------THLPLVDFRS 310
YL T ++ G ++++ + P +LT+ +
Sbjct: 73 SDYLKTRAKFVKG-------LIFMVDS-----TVDPKKLTTTAEFLVDILSITESSCENG 120
Query: 311 VPILVLG----LDNAGKSSIIKRILGEPIISLVPT----VGFNRARVEYGNKYEVFLYDL 362
+ IL+ L A S IK L I ++ + ++ + E L L
Sbjct: 121 IDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVL 180
Query: 363 GGSEDFR 369
++ F+
Sbjct: 181 QSTDGFK 187
Score = 62.5 bits (152), Expect = 3e-11
Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIW 372
I++ G N+GK+S++ + + + V + A G+ + D G R
Sbjct: 15 IIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTLV--DFPGHVKLRYKL 72
Query: 373 KQYL 376
YL
Sbjct: 73 SDYL 76
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 69.4 bits (170), Expect = 1e-13
Identities = 30/184 (16%), Positives = 64/184 (34%), Gaps = 30/184 (16%)
Query: 199 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNK--YEVFLYDLGGSEDFR- 255
+L +GL ++GK+ + R+L ++ + A + N + L DL G E R
Sbjct: 10 VLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRF 69
Query: 256 TIWKQYLGT-------VSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDF 308
+ ++ + V DS Q + + L +
Sbjct: 70 QLLDRFKSSARAVVFVV--------DSAAFQREVKDVA--------EFLYQVLIDSMALK 113
Query: 309 RSVPILVLG----LDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGG 364
S +L+ + A + +I++ L + + +L T + ++ + L G
Sbjct: 114 NSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGK 173
Query: 365 SEDF 368
+F
Sbjct: 174 EFEF 177
Score = 67.8 bits (166), Expect = 3e-13
Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNK--YEVFLYDLGGSEDFR- 369
+L +GL ++GK+ + R+L ++ + A + N + L DL G E R
Sbjct: 10 VLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRF 69
Query: 370 TIWKQYL 376
+ ++
Sbjct: 70 QLLDRFK 76
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 67.8 bits (166), Expect = 3e-13
Identities = 28/152 (18%), Positives = 53/152 (34%), Gaps = 26/152 (17%)
Query: 199 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIW 258
I++ G N+GK+S++ + + + V + A G+ + D G R
Sbjct: 51 IIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTLV--DFPGHVKLRYKL 108
Query: 259 KQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSA--------THLPLVDFRS 310
YL T ++ G ++++ + P +LT+ +
Sbjct: 109 SDYLKTRAKFVKG-------LIFMVDS-----TVDPKKLTTTAEFLVDILSITESSCENG 156
Query: 311 VPILVLG----LDNAGKSSIIKRILGEPIISL 338
+ IL+ L A S IK L I +
Sbjct: 157 IDILIACNKSELFTARPPSKIKDALESEIQKV 188
Score = 62.8 bits (153), Expect = 1e-11
Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIW 372
I++ G N+GK+S++ + + + V + A G+ + D G R
Sbjct: 51 IIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTLV--DFPGHVKLRYKL 108
Query: 373 KQYL 376
YL
Sbjct: 109 SDYL 112
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 67.1 bits (164), Expect = 5e-13
Identities = 27/186 (14%), Positives = 55/186 (29%), Gaps = 48/186 (25%)
Query: 189 LSLFDFR----SVPILVLGLDNAGKSSIIKRILGEPIISL-----------VPTVGFNRA 233
+S +F + I+ G +GK++ +K I + T+ F+
Sbjct: 3 MSTINFANREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFL 62
Query: 234 RVEYGN----KYEVFLYDLGGSEDFRTIWKQYLGTV--------SQTPLGRPDSRTCQVY 281
++ G K LY + G + K L V S R
Sbjct: 63 PLDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSA----PNRLRANAES 118
Query: 282 LIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLG----LDNAGKSSIIKRILG-EPII 336
+ + + VPI++ L +A +++ ++ E
Sbjct: 119 M------------RNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEGKF 166
Query: 337 SLVPTV 342
++ V
Sbjct: 167 PVLEAV 172
Score = 63.6 bits (155), Expect = 7e-12
Identities = 15/79 (18%), Positives = 27/79 (34%), Gaps = 15/79 (18%)
Query: 313 ILVLGLDNAGKSSIIKRILGEPIISL-----------VPTVGFNRARVEYGN----KYEV 357
I+ G +GK++ +K I + T+ F+ ++ G K
Sbjct: 17 IVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRF 76
Query: 358 FLYDLGGSEDFRTIWKQYL 376
LY + G + K L
Sbjct: 77 HLYTVPGQVFYNASRKLIL 95
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 67.8 bits (165), Expect = 5e-12
Identities = 79/512 (15%), Positives = 153/512 (29%), Gaps = 190/512 (37%)
Query: 124 TSSVLSDDPAPTFEVCIVSLLVHLMRGILMGIQNVPNFQTSSVLSDDPAPT------FEN 177
SS++ F+ + L L G ++ + +L ++ +N
Sbjct: 68 VSSLVEPSKVGQFDQVLNLCLTEFENCYLEG-NDIHAL-AAKLLQENDTTLVKTKELIKN 125
Query: 178 FLDLRVLL-----PTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNR 232
++ R++ S FR+V G + ++ I G G
Sbjct: 126 YITARIMAKRPFDKKSNSAL-FRAV--------GEGNAQLVA-IFG----------GQ-- 163
Query: 233 ARVEYGNKYEVFLYDLGGSEDFRTIWKQY-------LGTVSQT--PLGRPDSRTCQVYL- 282
GN + F E+ R +++ Y + ++T L R +V+
Sbjct: 164 -----GNTDDYF-------EELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ 211
Query: 283 ---IMCGVHQVSGIPDE--LTSATHLPLVDFRSVPIL-------------VLGLD----- 319
I+ + S PD+ L S P+ S P++ +LG
Sbjct: 212 GLNILEWLENPSNTPDKDYLLSI---PI----SCPLIGVIQLAHYVVTAKLLGFTPGELR 264
Query: 320 --NAGKSSIIKRILGEPIISLVPTV-GFNRARVEYGNKYEVFLYDLG--GSEDFRTIWKQ 374
G + + ++ I+ + F + K L+ +G E +
Sbjct: 265 SYLKGATGHSQGLVTAVAIAETDSWESFFVS----VRKAITVLFFIGVRCYEAYPNT--- 317
Query: 375 YLGTVSQTLL---VSH---------SLSGRPDDRCQVYLMSCNC------QVYLISAKNL 416
++ ++L + + S+S ++ Q Y+ N QV IS L
Sbjct: 318 ---SLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVE-IS---L 370
Query: 417 SNGFKKSERDETNISNFQIKNSSENLQDNNTS------DNHDSKKKQP-RKRKKKV---- 465
NG K N + ++L N + + + + P +RK K
Sbjct: 371 VNGAK----------NLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRF 420
Query: 466 ----APLNTD--------------------DETELSLPPLRLLGRNVTHTDSNQEQRCLN 501
+P ++ + ++ +P V T + R
Sbjct: 421 LPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIP--------VYDTFDGSDLR--V 470
Query: 502 LSSDPLGTGAFNVLHAIATDAARRNPNQRDWE 533
LS ++ I D R P WE
Sbjct: 471 LSG--------SISERIV-DCIIRLPV--KWE 491
Score = 53.1 bits (127), Expect = 2e-07
Identities = 67/415 (16%), Positives = 117/415 (28%), Gaps = 147/415 (35%)
Query: 64 RIRTFA------NSIEPIEMVEHKMLRDVVLYNMYKAEIWA-ILRLQKNIHNIACKDMNM 116
+ A N+ + E E LRD LY Y + I + + + ++
Sbjct: 153 NAQLVAIFGGQGNTDDYFE--E---LRD--LYQTYHVLVGDLIKFSAETLSELIRTTLDA 205
Query: 117 QNV--PNFQTSSVLSD-DPAPTFEV---CIVSL-------LVHLMR-----GILMGIQNV 158
+ V L + P + +S L H + G G +
Sbjct: 206 EKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPG-ELR 264
Query: 159 PNFQTSSVLSDD--------PAPTFENFLD-----LRVLL----------PTHLSL---- 191
+ ++ S ++E+F + VL P + SL
Sbjct: 265 SYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYP-NTSLPPSI 323
Query: 192 -FDFRSV------PIL-VLGLDNAGKSSIIKRI-----LGEPI-ISLV--PT--V----- 228
D P+L + L + + G+ + ISLV V
Sbjct: 324 LEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPP 383
Query: 229 -----------------GFNRARVEYGNK----YEVFL---------Y----------DL 248
G +++R+ + + FL DL
Sbjct: 384 QSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDL 443
Query: 249 GGSEDFRTIWKQYLG-TVSQTPLGRPDSRTCQVYLIMCGVHQVSGIP---DELT--SATH 302
+ + + + V T G D R + V + +P + T ATH
Sbjct: 444 VKNN--VSFNAKDIQIPVYDTFDGS-DLRVLSGSISERIVDCIIRLPVKWETTTQFKATH 500
Query: 303 LPLVDFRSVPILVLGLDNAGKSSIIKRIL---GEPIISLVPTVGFNRARVEYGNK 354
++DF P GL + R G +I + T+ N +YG K
Sbjct: 501 --ILDFG--PGGASGL-----GVLTHRNKDGTGVRVI-VAGTLDINPDD-DYGFK 544
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 66.8 bits (163), Expect = 7e-12
Identities = 30/122 (24%), Positives = 62/122 (50%), Gaps = 1/122 (0%)
Query: 141 VSLLVHLMRGILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPIL 200
+ +H+ ++ +N+ + + S S + + + L+ + + + IL
Sbjct: 267 FAFPLHVDYSWVISTENLSSDSSLSSPSALNSLSSPSALNSTASNSPGIEGLSNKEMRIL 326
Query: 201 VLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQ 260
+LGLD AGK++I+ ++ ++ +PTVGFN V Y N + ++D+GG + R +W+
Sbjct: 327 MLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKN-VKFNVWDVGGQDKIRPLWRH 385
Query: 261 YL 262
Y
Sbjct: 386 YY 387
Score = 63.0 bits (153), Expect = 1e-10
Identities = 26/93 (27%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Query: 284 MCGVHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVG 343
+ + S + +++ + + + + IL+LGLD AGK++I+ ++ ++ +PTVG
Sbjct: 296 LNSLSSPSALNSTASNSPGIEGLSNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVG 355
Query: 344 FNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYL 376
FN V Y N + ++D+GG + R +W+ Y
Sbjct: 356 FNVETVTYKN-VKFNVWDVGGQDKIRPLWRHYY 387
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 62.7 bits (152), Expect = 1e-11
Identities = 17/97 (17%), Positives = 34/97 (35%), Gaps = 7/97 (7%)
Query: 313 ILVLGLDNAGKSSIIKRILG----EPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 368
IL++GL +GKSSI K + + L T + + + ++D G DF
Sbjct: 23 ILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDF 82
Query: 369 RTIWKQ---YLGTVSQTLLVSHSLSGRPDDRCQVYLM 402
+ V + + ++++
Sbjct: 83 FDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHIT 119
Score = 62.3 bits (151), Expect = 2e-11
Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Query: 199 ILVLGLDNAGKSSIIKRILG----EPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 254
IL++GL +GKSSI K + + L T + + + ++D G DF
Sbjct: 23 ILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDF 82
Query: 255 RTIWKQY 261
Y
Sbjct: 83 FDPTFDY 89
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation
factor 1; structural genomics consortium, GTPase
activation; HET: GDP; 2.80A {Homo sapiens}
Length = 329
Score = 62.6 bits (152), Expect = 8e-11
Identities = 28/77 (36%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 186 PTHLSLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFL 245
P LF + + IL++GLD AGK++I+ ++ I++ +PT+GFN VEY N +
Sbjct: 155 PQPRGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN-ISFTV 213
Query: 246 YDLGGSEDFRTIWKQYL 262
+D+GG + R +W+ Y
Sbjct: 214 WDVGGQDKIRPLWRHYF 230
Score = 62.2 bits (151), Expect = 1e-10
Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 9/137 (6%)
Query: 248 LGGSEDFRTIWKQYLGTVSQTPL-GRPDSRTCQVY--LIMCGV-----HQVSGIPDELTS 299
GG+ FR + L + +SR ++ ++ S T
Sbjct: 95 AGGNAKFREFLESQEDYDPCWSLQEKYNSRAAALFRDKVVALAEGREWSLESSPAQNWTP 154
Query: 300 ATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFL 359
L + + IL++GLD AGK++I+ ++ I++ +PT+GFN VEY N +
Sbjct: 155 PQPRGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN-ISFTV 213
Query: 360 YDLGGSEDFRTIWKQYL 376
+D+GG + R +W+ Y
Sbjct: 214 WDVGGQDKIRPLWRHYF 230
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 59.9 bits (144), Expect = 2e-09
Identities = 63/468 (13%), Positives = 136/468 (29%), Gaps = 113/468 (24%)
Query: 96 IWAILRLQKNIHNIACKDMNMQNVPNFQTSSVLSDDPAPTFEVCIVSLLVHLMRGILMGI 155
W +L Q+ + +++ N F S + ++ P+ M +
Sbjct: 68 FWTLLSKQEEMVQKFVEEVLRINYK-FLMSPIKTEQRQPS------------MMTRMYIE 114
Query: 156 QNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVL-GLDNAGKSSIIK 214
Q + + V + + +L LR L L L R +++ G+ +GK+
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQAL---LEL---RPAKNVLIDGVLGSGKT---- 164
Query: 215 RILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPD 274
+ V +V+ +++F +L T+ + Q L + D
Sbjct: 165 --------WVALDV-CLSYKVQCKMDFKIFWLNLKNCNSPETVLEML-----QKLLYQID 210
Query: 275 SRTCQVYLIMCGVHQVSGIPDELTSATHLP--LVDFRSVPILVLGLDNAGKSSIIK---- 328
S I + S L+ + +L L N +
Sbjct: 211 PNWTS------RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL 264
Query: 329 --RILGEPIISLVPTVGFNRARVEYGNKY-EVFLYDLGGS---EDFRTIWKQYLGTVSQT 382
+I L+ T + L + ++ +++ +YL Q
Sbjct: 265 SCKI-------LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317
Query: 383 LLVSHSLSGRPDDRCQVYLMSCNCQVYLISA-----KNLSNGFKKSERDETNISNFQIKN 437
L P + + +I+ + +K D+ I++
Sbjct: 318 L---------PREVLTTNPRRLS----IIAESIRDGLATWDNWKHVNCDKLTTI---IES 361
Query: 438 SSENLQDNNTSDNHDSKKKQPRKRKKKVA--PLNTDDETELSLPP--LRLLGRNVTHTDS 493
S L+ RK +++ P + +P L L+ +V +D
Sbjct: 362 SLNVLEPAEY-----------RKMFDRLSVFPPSAH------IPTILLSLIWFDVIKSDV 404
Query: 494 NQ-----EQRCLNLSSDPLGTGAFNVLHAIATDAARRNPNQRDWEDRI 536
+ L + P + + +I + + N+ I
Sbjct: 405 MVVVNKLHKYSL-VEKQPKESTIS--IPSIYLELKVKLENEYALHRSI 449
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 53.8 bits (129), Expect = 4e-08
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 199 ILVLGLDNAGKSSIIKRILG----EPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 254
+L++G +GKSS+ I L T+ + + + + L+D GG + F
Sbjct: 6 LLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVF 65
Query: 255 R 255
Sbjct: 66 M 66
Score = 53.8 bits (129), Expect = 4e-08
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 313 ILVLGLDNAGKSSIIKRILG----EPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 368
+L++G +GKSS+ I L T+ + + + + L+D GG + F
Sbjct: 6 LLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVF 65
Query: 369 R 369
Sbjct: 66 M 66
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 42.0 bits (98), Expect = 4e-04
Identities = 30/176 (17%), Positives = 57/176 (32%), Gaps = 22/176 (12%)
Query: 290 VSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEP------IISLVPTVG 343
S I D L L + V G +GKSS I + G + V V
Sbjct: 55 NSAISDALKEIDSSVLN------VAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT 108
Query: 344 FNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQT-----LLVSHSLSGRPDDRCQ 398
R ++ N V +DL G YL + +++S + + D
Sbjct: 109 MERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIA 168
Query: 399 VYLMSCNCQVYLISAKNLSNGFKKSERDETNISNFQI-----KNSSENLQDNNTSD 449
+ + Y + K S+ +++ + ++ N ++N ++
Sbjct: 169 KAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAE 224
Score = 39.7 bits (92), Expect = 0.002
Identities = 24/118 (20%), Positives = 37/118 (31%), Gaps = 13/118 (11%)
Query: 158 VPNFQT-SSVLSDDPAPTFENFL------DLRVLLPTHLSLFDFRSVPILVLGLDNAGKS 210
F T ++S + E + + L D + + V G +GKS
Sbjct: 24 FKKFNTGRKIISQEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKS 83
Query: 211 SIIKRILGEP------IISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYL 262
S I + G + V V R ++ N V +DL G YL
Sbjct: 84 SFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYL 141
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 41.2 bits (96), Expect = 6e-04
Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 9/80 (11%)
Query: 313 ILVLGLDNAGKSSIIKRILG----EPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 368
+L++G+ GKSSI K + + L T + V +L G ++
Sbjct: 2 VLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFSTLIDLAVM--ELPGQLNY 59
Query: 369 R---TIWKQYLGTVSQTLLV 385
++ +V + V
Sbjct: 60 FEPSYDSERLFKSVGALVYV 79
Score = 40.8 bits (95), Expect = 8e-04
Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 6/64 (9%)
Query: 199 ILVLGLDNAGKSSIIKRILG----EPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 254
+L++G+ GKSSI K + + L T + V +L G ++
Sbjct: 2 VLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFSTLIDLAVM--ELPGQLNY 59
Query: 255 RTIW 258
Sbjct: 60 FEPS 63
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase,
GTP binding, protein binding, signali protein; HET: GNP;
2.30A {Homo sapiens}
Length = 204
Score = 37.8 bits (88), Expect = 0.003
Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
Query: 288 HQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSS-IIKRILGEPIISLVPTVGFN- 345
H SG+ + +L +++ +V+G GK+ +I +PTV N
Sbjct: 9 HHSSGLVPRGSHMENLYF-QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY 67
Query: 346 RARVEYGNK-YEVFLYDLGGSEDFRTI 371
A V K + L+D G ED+ +
Sbjct: 68 SANVMVDGKPVNLGLWDTAGQEDYDRL 94
Score = 36.7 bits (85), Expect = 0.010
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Query: 192 FDFRSVPILVLGLDNAGKSS-IIKRILGEPIISLVPTVGFN-RARVEYGNK-YEVFLYDL 248
F +++ +V+G GK+ +I +PTV N A V K + L+D
Sbjct: 26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 85
Query: 249 GGSEDFRTI 257
G ED+ +
Sbjct: 86 AGQEDYDRL 94
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 36.5 bits (83), Expect = 0.023
Identities = 20/149 (13%), Positives = 48/149 (32%), Gaps = 3/149 (2%)
Query: 151 ILMGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKS 210
+ + + + + L+ D + + + +LVLG GKS
Sbjct: 24 MSVCLNKLAETINKAELAGDSSSGKLSLERDIEDITIASKNLQQGVFRLLVLGDMKRGKS 83
Query: 211 SIIKRILGEPI--ISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQT 268
+ + ++GE + + P + YG + +V ++ G + ++ + +
Sbjct: 84 TFLNALIGENLLPSDVNPCTA-VLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTID 142
Query: 269 PLGRPDSRTCQVYLIMCGVHQVSGIPDEL 297
P + + V P L
Sbjct: 143 PAEAKKLEQEKKQAFPDVDYAVVEYPLTL 171
Score = 35.3 bits (80), Expect = 0.054
Identities = 15/94 (15%), Positives = 33/94 (35%), Gaps = 3/94 (3%)
Query: 309 RSVPILVLGLDNAGKSSIIKRILGEPI--ISLVPTVGFNRARVEYGNKYEVFLYDLGGSE 366
+LVLG GKS+ + ++GE + + P + YG + +V ++ G
Sbjct: 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTA-VLTVLRYGPEKKVTIHFNDGKS 126
Query: 367 DFRTIWKQYLGTVSQTLLVSHSLSGRPDDRCQVY 400
+ ++ + + + L
Sbjct: 127 PQQLDFQNFKYKYTIDPAEAKKLEQEKKQAFPDV 160
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane,
prenylation, hydrolase, nucleotide-binding, methylation,
lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo
sapiens}
Length = 214
Score = 34.7 bits (80), Expect = 0.041
Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 195 RSVPILVLGLDNAGKSS-IIKRILGEPIISLVPTVGFN-RARVEYGNK-YEVFLYDLGGS 251
RSV ++++G GK+S ++ G S PTV ++ K + ++D G
Sbjct: 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQ 92
Query: 252 EDFRTI 257
+D+ +
Sbjct: 93 DDYDRL 98
Score = 34.7 bits (80), Expect = 0.041
Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 309 RSVPILVLGLDNAGKSS-IIKRILGEPIISLVPTVGFN-RARVEYGNK-YEVFLYDLGGS 365
RSV ++++G GK+S ++ G S PTV ++ K + ++D G
Sbjct: 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQ 92
Query: 366 EDFRTI 371
+D+ +
Sbjct: 93 DDYDRL 98
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Length = 186
Score = 34.4 bits (79), Expect = 0.044
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 195 RSVPILVLGLDNAGKSS-IIKRILGEPIISLVPTVGFN-RARVEYGNK-YEVFLYDLGGS 251
+++ +V+G GK+ +I +PTV N A V K + L+D G
Sbjct: 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 63
Query: 252 EDFRTI 257
ED+ +
Sbjct: 64 EDYDRL 69
Score = 34.4 bits (79), Expect = 0.044
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 309 RSVPILVLGLDNAGKSS-IIKRILGEPIISLVPTVGFN-RARVEYGNK-YEVFLYDLGGS 365
+++ +V+G GK+ +I +PTV N A V K + L+D G
Sbjct: 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 63
Query: 366 EDFRTI 371
ED+ +
Sbjct: 64 EDYDRL 69
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP
hydrolysis, structural genomics, structural genomics
consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP:
c.37.1.8
Length = 207
Score = 34.3 bits (79), Expect = 0.058
Identities = 21/87 (24%), Positives = 33/87 (37%), Gaps = 3/87 (3%)
Query: 288 HQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKR-ILGEPIISLVPTVGFN- 345
H +L ++V+G GK+ ++ E VPTV N
Sbjct: 3 HHHHHSSGVDLGTENLYFQSMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENY 62
Query: 346 RARVEYGNK-YEVFLYDLGGSEDFRTI 371
A +E K E+ L+D G ED+ +
Sbjct: 63 VADIEVDGKQVELALWDTAGQEDYDRL 89
Score = 32.4 bits (74), Expect = 0.24
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 199 ILVLGLDNAGKSSIIKR-ILGEPIISLVPTVGFN-RARVEYGNK-YEVFLYDLGGSEDFR 255
++V+G GK+ ++ E VPTV N A +E K E+ L+D G ED+
Sbjct: 28 LVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYD 87
Query: 256 TI 257
+
Sbjct: 88 RL 89
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex,
membrane protein, endocytosis; HET: ANP; 3.10A {Mus
musculus}
Length = 550
Score = 34.8 bits (79), Expect = 0.066
Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 176 ENFLDLRVLLPTHLSLFDFRSVP-ILVLGLDNAGKSSIIKRILGEPIISL 224
E L DF P +LV G + GK+S I+ +L + +
Sbjct: 44 EEHYRFGSFHSPALEDADFDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGS 93
Score = 32.1 bits (72), Expect = 0.47
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 307 DFRSVP-ILVLGLDNAGKSSIIKRILGEPIISL 338
DF P +LV G + GK+S I+ +L + +
Sbjct: 61 DFDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGS 93
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling
protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8
PDB: 2v55_B*
Length = 184
Score = 33.1 bits (76), Expect = 0.12
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 199 ILVLGLDNAGKSS-IIKRILGEPIISLVPTVGFN-RARVEYGNK-YEVFLYDLGGSEDFR 255
I+V+G GK++ + + VPTV N A E + E+ L+D GS +
Sbjct: 10 IVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYD 69
Query: 256 TI 257
+
Sbjct: 70 NV 71
Score = 33.1 bits (76), Expect = 0.12
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 313 ILVLGLDNAGKSS-IIKRILGEPIISLVPTVGFN-RARVEYGNK-YEVFLYDLGGSEDFR 369
I+V+G GK++ + + VPTV N A E + E+ L+D GS +
Sbjct: 10 IVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYD 69
Query: 370 TI 371
+
Sbjct: 70 NV 71
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 33.2 bits (76), Expect = 0.14
Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 3/81 (3%)
Query: 294 PDELTSATHLPLVDFRSVPILVLGLDNAGKSS-IIKRILGEPIISLVPTVGFN-RARVEY 351
P E + R V +++G GK+S ++ +PT N A V
Sbjct: 4 PGEPGGRGRAGGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSV 63
Query: 352 GNK-YEVFLYDLGGSEDFRTI 371
+ + L D G ++F +
Sbjct: 64 DGRPVRLQLCDTAGQDEFDKL 84
Score = 32.4 bits (74), Expect = 0.26
Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Query: 195 RSVPILVLGLDNAGKSS-IIKRILGEPIISLVPTVGFN-RARVEYGNK-YEVFLYDLGGS 251
R V +++G GK+S ++ +PT N A V + + L D G
Sbjct: 19 RGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQ 78
Query: 252 EDFRTI 257
++F +
Sbjct: 79 DEFDKL 84
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm,
lipoprotein, membrane, methylation, nucleotide-binding,
prenylation, ----; HET: GDP; 1.53A {Arabidopsis
thaliana} PDB: 2nty_C* 2wbl_C
Length = 182
Score = 32.7 bits (75), Expect = 0.16
Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 3/66 (4%)
Query: 195 RSVPILVLGLDNAGKSS-IIKRILGEPIISLVPTVGFN-RARVEYGNK-YEVFLYDLGGS 251
R + + +G GK+ +I VPTV N A V + L+D G
Sbjct: 7 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQ 66
Query: 252 EDFRTI 257
ED+ +
Sbjct: 67 EDYNRL 72
Score = 32.7 bits (75), Expect = 0.16
Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 3/66 (4%)
Query: 309 RSVPILVLGLDNAGKSS-IIKRILGEPIISLVPTVGFN-RARVEYGNK-YEVFLYDLGGS 365
R + + +G GK+ +I VPTV N A V + L+D G
Sbjct: 7 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQ 66
Query: 366 EDFRTI 371
ED+ +
Sbjct: 67 EDYNRL 72
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2,
ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding,
GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB:
3d6t_B*
Length = 184
Score = 31.6 bits (72), Expect = 0.38
Identities = 11/73 (15%), Positives = 35/73 (47%), Gaps = 9/73 (12%)
Query: 199 ILVLGLDNAGKSSIIKRILGE---PIISLVPTVG--FNRARVEYGNKYEVF----LYDLG 249
++++G +GK++++++++ + TVG ++ +K + ++D
Sbjct: 5 LMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFA 64
Query: 250 GSEDFRTIWKQYL 262
G E+F + ++
Sbjct: 65 GREEFYSTHPHFM 77
Score = 31.6 bits (72), Expect = 0.38
Identities = 11/73 (15%), Positives = 35/73 (47%), Gaps = 9/73 (12%)
Query: 313 ILVLGLDNAGKSSIIKRILGE---PIISLVPTVG--FNRARVEYGNKYEVF----LYDLG 363
++++G +GK++++++++ + TVG ++ +K + ++D
Sbjct: 5 LMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFA 64
Query: 364 GSEDFRTIWKQYL 376
G E+F + ++
Sbjct: 65 GREEFYSTHPHFM 77
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase,
signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP:
c.37.1.8
Length = 205
Score = 31.6 bits (72), Expect = 0.39
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Query: 196 SVPILVLGLDNAGKSS-IIKRILGEPIISLVPTVGFN-RARVEYGNK-YEVFLYDLGGSE 252
I+V+G GK++ + + VPTV N A E + E+ L+D GS
Sbjct: 28 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSP 87
Query: 253 DFRTI 257
+ +
Sbjct: 88 YYDNV 92
Score = 31.6 bits (72), Expect = 0.39
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Query: 310 SVPILVLGLDNAGKSS-IIKRILGEPIISLVPTVGFN-RARVEYGNK-YEVFLYDLGGSE 366
I+V+G GK++ + + VPTV N A E + E+ L+D GS
Sbjct: 28 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSP 87
Query: 367 DFRTI 371
+ +
Sbjct: 88 YYDNV 92
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Length = 279
Score = 32.2 bits (74), Expect = 0.40
Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 16/70 (22%)
Query: 315 VLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLG-GSEDFRTIWK 373
+ GL+ AGK++++ + T G +F G T+ +
Sbjct: 52 LYGLNGAGKTTLLNILNAY----EPATSG----------TVNLFGKMPGKVGYSAETV-R 96
Query: 374 QYLGTVSQTL 383
Q++G VS +L
Sbjct: 97 QHIGFVSHSL 106
Score = 30.6 bits (70), Expect = 1.0
Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 16/68 (23%)
Query: 201 VLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLG-GSEDFRTIWK 259
+ GL+ AGK++++ + T G +F G T+ +
Sbjct: 52 LYGLNGAGKTTLLNILNAY----EPATSG----------TVNLFGKMPGKVGYSAETV-R 96
Query: 260 QYLGTVSQ 267
Q++G VS
Sbjct: 97 QHIGFVSH 104
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein,
signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB:
2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A*
3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B*
1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Length = 201
Score = 31.3 bits (71), Expect = 0.49
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 196 SVPILVLGLDNAGKSS-IIKRILGEPIISLVPTVGFN-RARVEYGNK-YEVFLYDLGGSE 252
++++G GK+ +I + VPTV N A +E K E+ L+D G E
Sbjct: 25 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQE 84
Query: 253 DFRTI 257
D+ +
Sbjct: 85 DYDRL 89
Score = 31.3 bits (71), Expect = 0.49
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 310 SVPILVLGLDNAGKSS-IIKRILGEPIISLVPTVGFN-RARVEYGNK-YEVFLYDLGGSE 366
++++G GK+ +I + VPTV N A +E K E+ L+D G E
Sbjct: 25 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQE 84
Query: 367 DFRTI 371
D+ +
Sbjct: 85 DYDRL 89
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 31.9 bits (72), Expect = 0.51
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 10/56 (17%)
Query: 195 RSVPILVLGLDNAGKSSIIKRILGE--------PIISLVP--TVGFNRARVEYGNK 240
+ V+G N GKS+ I R++ E S P T+ ++ +
Sbjct: 159 GGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEESS 214
Score = 31.9 bits (72), Expect = 0.51
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 10/56 (17%)
Query: 309 RSVPILVLGLDNAGKSSIIKRILGE--------PIISLVP--TVGFNRARVEYGNK 354
+ V+G N GKS+ I R++ E S P T+ ++ +
Sbjct: 159 GGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEESS 214
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria,
structural genomics, structural genomics consortium,
SGC, unknown function; HET: GDP; 2.01A {Plasmodium
falciparum}
Length = 228
Score = 31.3 bits (71), Expect = 0.53
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 303 LPLVDFRSVPILVLGLDNAGKSSIIKRI 330
LP ++ I++ G N GKSS + +
Sbjct: 22 LPSINPHKKTIILSGAPNVGKSSFMNIV 49
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin,
small GTPase, structural genomic consortium, SGC; HET:
GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Length = 214
Score = 31.0 bits (70), Expect = 0.62
Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 199 ILVLGLDNAGKSS-IIKRILGEPIISLVPTVGFN-RARVEYGNK-YEVFLYDLGGSEDFR 255
++++G GK++ + + VPTV N A +E + E+ L+D GS +
Sbjct: 30 LVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYD 89
Query: 256 TI 257
+
Sbjct: 90 NV 91
Score = 31.0 bits (70), Expect = 0.62
Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 313 ILVLGLDNAGKSS-IIKRILGEPIISLVPTVGFN-RARVEYGNK-YEVFLYDLGGSEDFR 369
++++G GK++ + + VPTV N A +E + E+ L+D GS +
Sbjct: 30 LVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYD 89
Query: 370 TI 371
+
Sbjct: 90 NV 91
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem
G-domains, ligand binding protein; HET: GDP; 1.90A
{Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Length = 439
Score = 31.3 bits (72), Expect = 0.81
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 206 NAGKSSIIKRILGE 219
N GKS++ IL +
Sbjct: 190 NVGKSTLFNAILNK 203
Score = 31.3 bits (72), Expect = 0.81
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 320 NAGKSSIIKRILGE 333
N GKS++ IL +
Sbjct: 190 NVGKSTLFNAILNK 203
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo
sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 30.3 bits (69), Expect = 0.93
Identities = 18/91 (19%), Positives = 38/91 (41%), Gaps = 10/91 (10%)
Query: 288 HQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKR-ILGEPIISLVPTVG--F 344
H SG + + +++ ++V+G GKS++ + I + PT+ +
Sbjct: 6 HHSSGRENLYFQ----GMTEYK---LVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY 58
Query: 345 NRARVEYGNKYEVFLYDLGGSEDFRTIWKQY 375
+ V G + + D G E++ + QY
Sbjct: 59 RKQVVIDGETCLLDILDTAGQEEYSAMRDQY 89
Score = 29.9 bits (68), Expect = 1.6
Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 199 ILVLGLDNAGKSSIIKR-ILGEPIISLVPTVG--FNRARVEYGNKYEVFLYDLGGSEDFR 255
++V+G GKS++ + I + PT+ + + V G + + D G E++
Sbjct: 24 LVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS 83
Query: 256 TIWKQY 261
+ QY
Sbjct: 84 AMRDQY 89
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET:
GDP; 2.50A {Bacillus subtilis}
Length = 436
Score = 31.3 bits (72), Expect = 0.94
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 206 NAGKSSIIKRILGE 219
N GKSS++ +LGE
Sbjct: 185 NVGKSSLVNAMLGE 198
Score = 31.3 bits (72), Expect = 0.94
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 320 NAGKSSIIKRILGE 333
N GKSS++ +LGE
Sbjct: 185 NVGKSSLVNAMLGE 198
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP;
1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A*
2j3e_A*
Length = 262
Score = 30.6 bits (69), Expect = 1.0
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 199 ILVLGLDNAGKSSIIKRILGEP--IISLVPTV 228
+LVLG GKSS + ++GE +S
Sbjct: 39 VLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAE 70
Score = 30.6 bits (69), Expect = 1.0
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 313 ILVLGLDNAGKSSIIKRILGEP--IISLVPTV 342
+LVLG GKSS + ++GE +S
Sbjct: 39 VLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAE 70
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 30.2 bits (69), Expect = 1.1
Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 199 ILVLGLDNAGKSSIIKR-ILGEPIISLVPTVG-FNRARVEY-GNKYEVFLYDLGGSEDFR 255
++V+G GKS++ + I + PT+ G + + D G E+F
Sbjct: 12 LVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFG 71
Query: 256 TIWKQY 261
+ +QY
Sbjct: 72 AMREQY 77
Score = 30.2 bits (69), Expect = 1.1
Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 313 ILVLGLDNAGKSSIIKR-ILGEPIISLVPTVG-FNRARVEY-GNKYEVFLYDLGGSEDFR 369
++V+G GKS++ + I + PT+ G + + D G E+F
Sbjct: 12 LVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFG 71
Query: 370 TIWKQY 375
+ +QY
Sbjct: 72 AMREQY 77
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding,
GTP-binding, signaling Pro lipoprotein, prenylation;
HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B*
Length = 194
Score = 30.0 bits (68), Expect = 1.2
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 195 RSVPILVLGLDNAGKSSIIKR-ILGEPIISLVPTVGFN-RARVEYGNK-YEVFLYDLGGS 251
+++ I+V+G GK+ ++ GE + VPTV N ++Y N+ + + L+D G
Sbjct: 22 KALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQ 81
Query: 252 EDFRTI 257
E++ +
Sbjct: 82 EEYDRL 87
Score = 30.0 bits (68), Expect = 1.2
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 309 RSVPILVLGLDNAGKSSIIKR-ILGEPIISLVPTVGFN-RARVEYGNK-YEVFLYDLGGS 365
+++ I+V+G GK+ ++ GE + VPTV N ++Y N+ + + L+D G
Sbjct: 22 KALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQ 81
Query: 366 EDFRTI 371
E++ +
Sbjct: 82 EEYDRL 87
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Length = 167
Score = 29.7 bits (68), Expect = 1.2
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 199 ILVLGLDNAGKSSIIKR-ILGEPIISLVPTVG-FNRARVEY-GNKYEVFLYDLGGSEDFR 255
++VLG GKS++ + + G I PT+ F R +E + + + D G+E F
Sbjct: 6 VVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFA 65
Query: 256 TIWKQY 261
++ Y
Sbjct: 66 SMRDLY 71
Score = 29.7 bits (68), Expect = 1.2
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 313 ILVLGLDNAGKSSIIKR-ILGEPIISLVPTVG-FNRARVEY-GNKYEVFLYDLGGSEDFR 369
++VLG GKS++ + + G I PT+ F R +E + + + D G+E F
Sbjct: 6 VVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFA 65
Query: 370 TIWKQY 375
++ Y
Sbjct: 66 SMRDLY 71
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 30.7 bits (69), Expect = 1.4
Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 9/60 (15%)
Query: 195 RSVPILVLGLDNAGKSSIIKRILGE-------PIISLVPTVGFNRARVEYGNKYEVFLYD 247
+ V+G N GKS+ I RI+ E S P G +E + LYD
Sbjct: 161 EGGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFP--GTTLDMIEIPLESGATLYD 218
Score = 30.7 bits (69), Expect = 1.4
Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 9/60 (15%)
Query: 309 RSVPILVLGLDNAGKSSIIKRILGE-------PIISLVPTVGFNRARVEYGNKYEVFLYD 361
+ V+G N GKS+ I RI+ E S P G +E + LYD
Sbjct: 161 EGGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFP--GTTLDMIEIPLESGATLYD 218
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein;
HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A*
3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 29.8 bits (68), Expect = 1.4
Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Query: 199 ILVLGLDNAGKSSIIKR-ILGEPIISLVPTVG-FNRARVEY-GNKYEVFLYDLGGSEDFR 255
++V+G GKS++ + + PT+ E + + D G E+F
Sbjct: 21 LVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFS 80
Query: 256 TIWKQYL 262
+ +QY+
Sbjct: 81 AMREQYM 87
Score = 29.8 bits (68), Expect = 1.4
Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Query: 313 ILVLGLDNAGKSSIIKR-ILGEPIISLVPTVG-FNRARVEY-GNKYEVFLYDLGGSEDFR 369
++V+G GKS++ + + PT+ E + + D G E+F
Sbjct: 21 LVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFS 80
Query: 370 TIWKQYL 376
+ +QY+
Sbjct: 81 AMREQYM 87
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein,
fluor membrane, lipoprotein, palmitate, prenylation;
HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X*
2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A*
6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A*
1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 29.4 bits (67), Expect = 1.8
Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 199 ILVLGLDNAGKSSIIKR-ILGEPIISLVPTVG--FNRARVEYGNKYEVFLYDLGGSEDFR 255
++V+G GKS++ + I + PT+ + + V G + + D G E++
Sbjct: 6 LVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS 65
Query: 256 TIWKQY 261
+ QY
Sbjct: 66 AMRDQY 71
Score = 29.4 bits (67), Expect = 1.8
Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 313 ILVLGLDNAGKSSIIKR-ILGEPIISLVPTVG--FNRARVEYGNKYEVFLYDLGGSEDFR 369
++V+G GKS++ + I + PT+ + + V G + + D G E++
Sbjct: 6 LVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS 65
Query: 370 TIWKQY 375
+ QY
Sbjct: 66 AMRDQY 71
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Length = 260
Score = 29.6 bits (66), Expect = 2.0
Identities = 20/104 (19%), Positives = 41/104 (39%), Gaps = 12/104 (11%)
Query: 288 HQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGEP-----IISLVPTV 342
H G + A+ L I+++G GKS+ IL + + S T
Sbjct: 6 HSHWGPHAKGQCASRSELR------IILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTK 59
Query: 343 GFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVS 386
++++ +GN+ E+ + D ++ + V + L+S
Sbjct: 60 TCSKSQGSWGNR-EIVIIDTPDMFSWKDHCEALYKEVQRCYLLS 102
Score = 29.3 bits (65), Expect = 3.4
Identities = 14/74 (18%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
Query: 199 ILVLGLDNAGKSSIIKRILGEP-----IISLVPTVGFNRARVEYGNKYEVFLYDLGGSED 253
I+++G GKS+ IL + + S T ++++ +GN+ E+ + D
Sbjct: 25 IILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNR-EIVIIDTPDMFS 83
Query: 254 FRTIWKQYLGTVSQ 267
++ + V +
Sbjct: 84 WKDHCEALYKEVQR 97
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics,
nysgxrc T18, GTPase, PSI, protein structure initiative;
HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Length = 282
Score = 30.0 bits (68), Expect = 2.0
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 195 RSVPILVLGLDNAGKSSIIKRILG 218
R++ L++G+ N GKS++I R+
Sbjct: 119 RAIRALIIGIPNVGKSTLINRLAK 142
Score = 30.0 bits (68), Expect = 2.0
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 309 RSVPILVLGLDNAGKSSIIKRILG 332
R++ L++G+ N GKS++I R+
Sbjct: 119 RAIRALIIGIPNVGKSTLINRLAK 142
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 2.0
Identities = 9/39 (23%), Positives = 13/39 (33%), Gaps = 14/39 (35%)
Query: 454 KKKQPRK---RKKKVAPLNTDDETELSLPPLRLLGRNVT 489
+K+ +K K A D S P L + T
Sbjct: 18 EKQALKKLQASLKLYAD---D-----SAPALAI---KAT 45
Score = 28.8 bits (63), Expect = 2.6
Identities = 7/23 (30%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 117 QNVPNFQTS-SVLSDDPAPTFEV 138
Q + Q S + +DD AP +
Sbjct: 20 QALKKLQASLKLYADDSAPALAI 42
Score = 28.8 bits (63), Expect = 3.1
Identities = 9/28 (32%), Positives = 12/28 (42%), Gaps = 7/28 (25%)
Query: 156 QNVPNFQTS-SVLSDDPAP------TFE 176
Q + Q S + +DD AP T E
Sbjct: 20 QALKKLQASLKLYADDSAPALAIKATME 47
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET:
GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Length = 270
Score = 29.5 bits (66), Expect = 2.4
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 199 ILVLGLDNAGKSSIIKRILGEPI 221
ILV+G GKSS + I+GE +
Sbjct: 42 ILVMGKGGVGKSSTVNSIIGERV 64
Score = 29.5 bits (66), Expect = 2.4
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 313 ILVLGLDNAGKSSIIKRILGEPI 335
ILV+G GKSS + I+GE +
Sbjct: 42 ILVMGKGGVGKSSTVNSIIGERV 64
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 30.0 bits (67), Expect = 2.6
Identities = 15/115 (13%), Positives = 40/115 (34%), Gaps = 16/115 (13%)
Query: 155 IQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIK 214
+++ P ++ + F + +L + + + ++G AGK+S++K
Sbjct: 4 LESPP----PEIVKQGKEAVRQYFQSIEEARSKGEALVHLQEIKVHLIGDGMAGKTSLLK 59
Query: 215 RILGEP------------IISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTI 257
+++GE +++ + + +D GG E
Sbjct: 60 QLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHAS 114
Score = 28.4 bits (63), Expect = 6.8
Identities = 12/76 (15%), Positives = 29/76 (38%), Gaps = 12/76 (15%)
Query: 308 FRSVPILVLGLDNAGKSSIIKRILGEP------------IISLVPTVGFNRARVEYGNKY 355
+ + + ++G AGK+S++K+++GE +++ + +
Sbjct: 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKEC 98
Query: 356 EVFLYDLGGSEDFRTI 371
+D GG E
Sbjct: 99 LFHFWDFGGQEIMHAS 114
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 29.0 bits (66), Expect = 2.8
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 199 ILVLGLDNAGKSSIIKR-ILGEPIISLVPTVG-FNRARVEY-GNKYEVFLYDLGGSEDFR 255
+ V G GKSS++ R + G S +PTV R + + + + D GS F
Sbjct: 6 VAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFP 65
Query: 256 TIWKQY 261
+ +
Sbjct: 66 AMQRLS 71
Score = 29.0 bits (66), Expect = 2.8
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 313 ILVLGLDNAGKSSIIKR-ILGEPIISLVPTVG-FNRARVEY-GNKYEVFLYDLGGSEDFR 369
+ V G GKSS++ R + G S +PTV R + + + + D GS F
Sbjct: 6 VAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFP 65
Query: 370 TIWKQY 375
+ +
Sbjct: 66 AMQRLS 71
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 29.1 bits (66), Expect = 2.9
Identities = 14/66 (21%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 199 ILVLGLDNAGKSSIIKR-ILGEPIISLVPTVG--FNRARVEYGNKYEVFLYDLGGSEDFR 255
++V G GKSS++ R + G + +PT+ + + + + + D GS F
Sbjct: 11 VVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFP 70
Query: 256 TIWKQY 261
+ +
Sbjct: 71 AMQRLS 76
Score = 29.1 bits (66), Expect = 2.9
Identities = 14/66 (21%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 313 ILVLGLDNAGKSSIIKR-ILGEPIISLVPTVG--FNRARVEYGNKYEVFLYDLGGSEDFR 369
++V G GKSS++ R + G + +PT+ + + + + + D GS F
Sbjct: 11 VVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFP 70
Query: 370 TIWKQY 375
+ +
Sbjct: 71 AMQRLS 76
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP,
signaling protein; HET: GNP; 2.00A {Thermotoga maritima}
PDB: 3cnn_A* 3cno_A*
Length = 262
Score = 29.1 bits (66), Expect = 3.1
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 195 RSVPILVLGLDNAGKSSIIKRILG 218
R +L++G+ N GKS+II ++ G
Sbjct: 98 RLARVLIVGVPNTGKSTIINKLKG 121
Score = 29.1 bits (66), Expect = 3.1
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 309 RSVPILVLGLDNAGKSSIIKRILG 332
R +L++G+ N GKS+II ++ G
Sbjct: 98 RLARVLIVGVPNTGKSTIINKLKG 121
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 29.2 bits (66), Expect = 3.3
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 199 ILVLGLDNAGKSSIIKRILGEP--IISLVP 226
I+V G N GKSS + ++G+ I+S
Sbjct: 37 IVVAGRRNVGKSSFMNALVGQNVSIVSDYA 66
Score = 29.2 bits (66), Expect = 3.3
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 313 ILVLGLDNAGKSSIIKRILGEP--IISLVP 340
I+V G N GKSS + ++G+ I+S
Sbjct: 37 IVVAGRRNVGKSSFMNALVGQNVSIVSDYA 66
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 28.7 bits (65), Expect = 3.3
Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 199 ILVLGLDNAGKSSIIKR-ILGEPIISLVPTVG--FNRARVEYGNKYEVFLYDLGGSEDFR 255
++V+G D GKS++ + I + PT+ + + V G + + D G E++
Sbjct: 7 LVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS 66
Query: 256 TIWKQY 261
+ QY
Sbjct: 67 AMRDQY 72
Score = 28.7 bits (65), Expect = 3.3
Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 313 ILVLGLDNAGKSSIIKR-ILGEPIISLVPTVG--FNRARVEYGNKYEVFLYDLGGSEDFR 369
++V+G D GKS++ + I + PT+ + + V G + + D G E++
Sbjct: 7 LVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS 66
Query: 370 TIWKQY 375
+ QY
Sbjct: 67 AMRDQY 72
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 28.6 bits (65), Expect = 3.6
Identities = 12/66 (18%), Positives = 25/66 (37%), Gaps = 2/66 (3%)
Query: 199 ILVLGLDNAGKSSIIKRILGEPIISLVPTVG-FNRARVEY-GNKYEVFLYDLGGSEDFRT 256
+L+LG GKS++ + G G + G + + +YD+ + R
Sbjct: 5 VLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRW 64
Query: 257 IWKQYL 262
+ +
Sbjct: 65 LPGHCM 70
Score = 28.6 bits (65), Expect = 3.6
Identities = 12/66 (18%), Positives = 25/66 (37%), Gaps = 2/66 (3%)
Query: 313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVG-FNRARVEY-GNKYEVFLYDLGGSEDFRT 370
+L+LG GKS++ + G G + G + + +YD+ + R
Sbjct: 5 VLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRW 64
Query: 371 IWKQYL 376
+ +
Sbjct: 65 LPGHCM 70
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics
consortium, SGC, immune system; HET: GDP; 2.21A {Homo
sapiens} PDB: 3v70_A*
Length = 247
Score = 28.9 bits (64), Expect = 3.8
Identities = 11/67 (16%), Positives = 22/67 (32%), Gaps = 6/67 (8%)
Query: 199 ILVLGLDNAGKSSIIKRILGEP-----IISLVPTVGFNRARVEYGNKYEVFLYDLGGSED 253
++++G AGKS+ ILG+ + + T + V + D
Sbjct: 24 LILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKC-HVEVVDTPDIFS 82
Query: 254 FRTIWKQ 260
+
Sbjct: 83 SQVSKTD 89
Score = 28.9 bits (64), Expect = 3.8
Identities = 11/67 (16%), Positives = 22/67 (32%), Gaps = 6/67 (8%)
Query: 313 ILVLGLDNAGKSSIIKRILGEP-----IISLVPTVGFNRARVEYGNKYEVFLYDLGGSED 367
++++G AGKS+ ILG+ + + T + V + D
Sbjct: 24 LILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKC-HVEVVDTPDIFS 82
Query: 368 FRTIWKQ 374
+
Sbjct: 83 SQVSKTD 89
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural
protein structure initiative, midwest center for
structural genomics; HET: MSE; 2.00A {Pseudomonas
aeruginosa PAO1}
Length = 500
Score = 29.2 bits (66), Expect = 4.0
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 180 DLRV-LLPTHLSLFDFRSVPILVL--GLDNAGKSSIIKRI 216
+LR LL L P+++L G++ AGK +K +
Sbjct: 24 ELREALLEAQFELKQQARFPVIILINGIEGAGKGETVKLL 63
Score = 29.2 bits (66), Expect = 4.1
Identities = 8/28 (28%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 305 LVDFRSVPILVL--GLDNAGKSSIIKRI 330
L P+++L G++ AGK +K +
Sbjct: 36 LKQQARFPVIILINGIEGAGKGETVKLL 63
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 28.8 bits (64), Expect = 4.5
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 199 ILVLGLDNAGKSSIIKRILGE 219
I+++G AGKS+ ILG
Sbjct: 32 IVLVGKTGAGKSATGNSILGR 52
Score = 28.8 bits (64), Expect = 4.5
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 313 ILVLGLDNAGKSSIIKRILGE 333
I+++G AGKS+ ILG
Sbjct: 32 IVLVGKTGAGKSATGNSILGR 52
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Length = 194
Score = 28.2 bits (63), Expect = 5.2
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 195 RSVPILVLGLDNAGKSS-IIKRILGEPIISLVPTVGFN-RARVEYGNK-YEVFLYDLGGS 251
+ +V+G GK+ ++ VPTV + V G K Y + LYD G
Sbjct: 17 LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQ 76
Query: 252 EDFRTI 257
ED+ +
Sbjct: 77 EDYDRL 82
Score = 28.2 bits (63), Expect = 5.2
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 309 RSVPILVLGLDNAGKSS-IIKRILGEPIISLVPTVGFN-RARVEYGNK-YEVFLYDLGGS 365
+ +V+G GK+ ++ VPTV + V G K Y + LYD G
Sbjct: 17 LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQ 76
Query: 366 EDFRTI 371
ED+ +
Sbjct: 77 EDYDRL 82
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 27.8 bits (63), Expect = 5.7
Identities = 14/66 (21%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 199 ILVLGLDNAGKSSIIKR-ILGEPIISLVPTVG--FNRARVEYGNKYEVFLYDLGGSEDFR 255
++VLG GKS++ + + G + PT+ + + + + + D G+E F
Sbjct: 6 LVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFT 65
Query: 256 TIWKQY 261
+ Y
Sbjct: 66 AMRDLY 71
Score = 27.8 bits (63), Expect = 5.7
Identities = 14/66 (21%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 313 ILVLGLDNAGKSSIIKR-ILGEPIISLVPTVG--FNRARVEYGNKYEVFLYDLGGSEDFR 369
++VLG GKS++ + + G + PT+ + + + + + D G+E F
Sbjct: 6 LVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFT 65
Query: 370 TIWKQY 375
+ Y
Sbjct: 66 AMRDLY 71
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP,
complex, structural G NPPSFA; HET: GDP; 2.35A
{Pyrococcus horikoshii}
Length = 357
Score = 28.3 bits (63), Expect = 6.0
Identities = 15/86 (17%), Positives = 31/86 (36%), Gaps = 14/86 (16%)
Query: 255 RTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCG------VHQVSGIPDELTSA----THLP 304
R + ++Y+ + + D + + L A LP
Sbjct: 106 RELEERYVERIRYSN----DPNEIAELRRQFYGRVASVLRDIDDRLRYLNKAREVLKDLP 161
Query: 305 LVDFRSVPILVLGLDNAGKSSIIKRI 330
+VD +++ G N GKS+++K +
Sbjct: 162 VVDLEIPTVVIAGHPNVGKSTLLKAL 187
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG,
structural genomics, midwest center for S genomics; HET:
PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Length = 289
Score = 28.1 bits (63), Expect = 6.9
Identities = 8/40 (20%), Positives = 20/40 (50%)
Query: 179 LDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSIIKRILG 218
+L+ L + + + +++ +D AGK I+ ++G
Sbjct: 58 AELQEKLFAEGKFGNPKRLLLILQAMDTAGKGGIVSHVVG 97
Score = 28.1 bits (63), Expect = 7.6
Identities = 6/24 (25%), Positives = 15/24 (62%)
Query: 309 RSVPILVLGLDNAGKSSIIKRILG 332
+ + +++ +D AGK I+ ++G
Sbjct: 74 KRLLLILQAMDTAGKGGIVSHVVG 97
>2yyv_A Probable 2-phosphosulfolactate phosphatase; uncharacterized
conserved protein, structural genomics; 1.65A
{Thermotoga maritima} PDB: 2yzo_A
Length = 227
Score = 28.1 bits (62), Expect = 6.9
Identities = 9/54 (16%), Positives = 21/54 (38%)
Query: 474 TELSLPPLRLLGRNVTHTDSNQEQRCLNLSSDPLGTGAFNVLHAIATDAARRNP 527
+ L ++ G+ + T +N Q + S+ + +F L A+ +
Sbjct: 76 SPLEYRKEKISGKTIVLTTTNGTQVIEKIRSEEIIAASFLNLSAVVEYLKSKED 129
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural
genomics, SGC, structural genomics consortium, signaling
protein; HET: GDP; 2.15A {Homo sapiens}
Length = 199
Score = 28.0 bits (63), Expect = 7.0
Identities = 26/118 (22%), Positives = 46/118 (38%), Gaps = 30/118 (25%)
Query: 153 MGIQNVPNFQTSSVLSDDPAPTFENFLDLRVLLPTHLSLFDFRSVPILVLGLDNAGKSSI 212
MG + + +S ++ A +F ++ I++ G GKSS
Sbjct: 1 MGSSHHHHHHSSGLVPRGSAKSFS---------SQKA----YK---IVLAGDAAVGKSSF 44
Query: 213 IKRIL-GEPIISLVPTVGFNRARVEYGNKYEVF--------LYDLGGSEDFRTIWKQY 261
+ R+ E ++ T+G V++ K + L+D G E FR+I K Y
Sbjct: 45 LMRLCKNEFRENISATLG-----VDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSY 97
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Length = 189
Score = 27.6 bits (62), Expect = 7.8
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 199 ILVLGLDNAGKSSIIKRIL-GEPIISLVPTVG--FNRARVEYGNKYEVFL--YDLGGSED 253
+L++G + GK+S + R + V TVG F V +K + L +D G E
Sbjct: 25 LLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDK-RIKLQIWDTAGQER 83
Query: 254 FRTIWKQY 261
+RTI Y
Sbjct: 84 YRTITTAY 91
Score = 27.6 bits (62), Expect = 7.8
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 313 ILVLGLDNAGKSSIIKRIL-GEPIISLVPTVG--FNRARVEYGNKYEVFL--YDLGGSED 367
+L++G + GK+S + R + V TVG F V +K + L +D G E
Sbjct: 25 LLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDK-RIKLQIWDTAGQER 83
Query: 368 FRTIWKQY 375
+RTI Y
Sbjct: 84 YRTITTAY 91
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP;
1.78A {Arabidopsis thaliana}
Length = 212
Score = 27.7 bits (62), Expect = 7.8
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 195 RSVPILVLGLDNA-GKSSIIKR-ILGEPIISLVPTVGFN-RARVEYGNK-YEVFLYDLGG 250
+ + + +G D A GK+ ++ + +PTV N A V + + L+D G
Sbjct: 8 KFIKCVTVG-DGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAG 66
Query: 251 SEDF 254
ED+
Sbjct: 67 QEDY 70
Score = 27.7 bits (62), Expect = 7.8
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 309 RSVPILVLGLDNA-GKSSIIKR-ILGEPIISLVPTVGFN-RARVEYGNK-YEVFLYDLGG 364
+ + + +G D A GK+ ++ + +PTV N A V + + L+D G
Sbjct: 8 KFIKCVTVG-DGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAG 66
Query: 365 SEDF 368
ED+
Sbjct: 67 QEDY 70
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET:
G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Length = 178
Score = 27.5 bits (62), Expect = 8.4
Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 5/68 (7%)
Query: 199 ILVLGLDNAGKSSIIKR-ILGEPIISLVPTVG--FNRARVEYGNKYEVFL--YDLGGSED 253
I+VLG +GK+S+ T+G F R+ V L +D+GG
Sbjct: 9 IVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTI 68
Query: 254 FRTIWKQY 261
+ +Y
Sbjct: 69 GGKMLDKY 76
Score = 27.5 bits (62), Expect = 8.4
Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 5/68 (7%)
Query: 313 ILVLGLDNAGKSSIIKR-ILGEPIISLVPTVG--FNRARVEYGNKYEVFL--YDLGGSED 367
I+VLG +GK+S+ T+G F R+ V L +D+GG
Sbjct: 9 IVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTI 68
Query: 368 FRTIWKQY 375
+ +Y
Sbjct: 69 GGKMLDKY 76
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT
complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Length = 208
Score = 27.6 bits (62), Expect = 8.6
Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 8/71 (11%)
Query: 199 ILVLGLDNAGKSSIIKR---ILGEPIISLVPTVG--FNRARVEYGN---KYEVFLYDLGG 250
+ V+G GKS++I + + T G A V + E+FL D G
Sbjct: 23 VAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAG 82
Query: 251 SEDFRTIWKQY 261
S+ ++ QY
Sbjct: 83 SDLYKEQISQY 93
Score = 27.6 bits (62), Expect = 8.6
Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 8/71 (11%)
Query: 313 ILVLGLDNAGKSSIIKR---ILGEPIISLVPTVG--FNRARVEYGN---KYEVFLYDLGG 364
+ V+G GKS++I + + T G A V + E+FL D G
Sbjct: 23 VAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAG 82
Query: 365 SEDFRTIWKQY 375
S+ ++ QY
Sbjct: 83 SDLYKEQISQY 93
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 27.7 bits (62), Expect = 9.1
Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 16/73 (21%)
Query: 199 ILVLGLDNAGKSSIIKRIL-GEPIISLVPTVGFNRARVEYGNKYEVFL---------YDL 248
++++G GK++ +KR L GE V T+G VE +D
Sbjct: 18 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG-----VEVHPL-VFHTNRGPIKFNVWDT 71
Query: 249 GGSEDFRTIWKQY 261
G E F + Y
Sbjct: 72 AGQEKFGGLRDGY 84
Score = 27.7 bits (62), Expect = 9.1
Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 16/73 (21%)
Query: 313 ILVLGLDNAGKSSIIKRIL-GEPIISLVPTVGFNRARVEYGNKYEVFL---------YDL 362
++++G GK++ +KR L GE V T+G VE +D
Sbjct: 18 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG-----VEVHPL-VFHTNRGPIKFNVWDT 71
Query: 363 GGSEDFRTIWKQY 375
G E F + Y
Sbjct: 72 AGQEKFGGLRDGY 84
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA,
national P protein structural and functional analyses;
HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Length = 190
Score = 27.3 bits (61), Expect = 9.2
Identities = 11/73 (15%), Positives = 21/73 (28%), Gaps = 29/73 (39%)
Query: 206 NAGKSSIIKRILGEPIISLVPTVGFNRARVE----------YGNKYEVFLYDLGG----- 250
N GKS++I R+ G+ + R + D+ G
Sbjct: 11 NVGKSTLIYRLTGK------------KVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMM 58
Query: 251 --SEDFRTIWKQY 261
++ + K
Sbjct: 59 GLPKEVQERIKDE 71
Score = 27.3 bits (61), Expect = 9.2
Identities = 11/73 (15%), Positives = 21/73 (28%), Gaps = 29/73 (39%)
Query: 320 NAGKSSIIKRILGEPIISLVPTVGFNRARVE----------YGNKYEVFLYDLGG----- 364
N GKS++I R+ G+ + R + D+ G
Sbjct: 11 NVGKSTLIYRLTGK------------KVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMM 58
Query: 365 --SEDFRTIWKQY 375
++ + K
Sbjct: 59 GLPKEVQERIKDE 71
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 27.2 bits (61), Expect = 9.9
Identities = 13/66 (19%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 199 ILVLGLDNAGKSSIIKR-ILGEPIISLVPTVG--FNRARVEYGNKYEVFLYDLGGSEDFR 255
+++LG GK+S+ + + GE PTV +++ +++ + L D G +++
Sbjct: 27 VVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYS 86
Query: 256 TIWKQY 261
+ +
Sbjct: 87 ILPYSF 92
Score = 27.2 bits (61), Expect = 9.9
Identities = 13/66 (19%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 313 ILVLGLDNAGKSSIIKR-ILGEPIISLVPTVG--FNRARVEYGNKYEVFLYDLGGSEDFR 369
+++LG GK+S+ + + GE PTV +++ +++ + L D G +++
Sbjct: 27 VVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYS 86
Query: 370 TIWKQY 375
+ +
Sbjct: 87 ILPYSF 92
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.406
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,911,980
Number of extensions: 468231
Number of successful extensions: 1145
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1063
Number of HSP's successfully gapped: 172
Length of query: 537
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 439
Effective length of database: 3,965,535
Effective search space: 1740869865
Effective search space used: 1740869865
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.8 bits)