RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16304
(537 letters)
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 55.2 bits (132), Expect = 1e-09
Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 4/101 (3%)
Query: 313 ILVLGLDNAGKSSIIKRIL-GEPIISLVPTVG--FNRARVEY-GNKYEVFLYDLGGSEDF 368
IL++G GKS ++ R + + S + T+G F V+ G K ++ ++D G E F
Sbjct: 5 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERF 64
Query: 369 RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQVYLMSCNCQVY 409
RTI Y +LV R + + + N
Sbjct: 65 RTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAN 105
Score = 54.4 bits (130), Expect = 2e-09
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 199 ILVLGLDNAGKSSIIKRIL-GEPIISLVPTVG--FNRARVEY-GNKYEVFLYDLGGSEDF 254
IL++G GKS ++ R + + S + T+G F V+ G K ++ ++D G E F
Sbjct: 5 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERF 64
Query: 255 RTIWKQYL 262
RTI Y
Sbjct: 65 RTITTAYY 72
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 55.5 bits (133), Expect = 2e-09
Identities = 24/119 (20%), Positives = 49/119 (41%), Gaps = 6/119 (5%)
Query: 199 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIW 258
+L+LG +GKS+I+K++ I+ +V T G + + ++D+GG D R W
Sbjct: 9 LLLLGAGESGKSTIVKQMR---ILHVVLTSGIFETKFQVDK-VNFHMFDVGGQRDERRKW 64
Query: 259 KQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLG 317
Q V+ S V +++ + S + R++ +++
Sbjct: 65 IQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNR--WLRTISVILFL 121
Score = 51.3 bits (122), Expect = 6e-08
Identities = 27/136 (19%), Positives = 60/136 (44%), Gaps = 8/136 (5%)
Query: 313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIW 372
+L+LG +GKS+I+K++ I+ +V T G + + ++D+GG D R W
Sbjct: 9 LLLLGAGESGKSTIVKQMR---ILHVVLTSGIFETKFQVDK-VNFHMFDVGGQRDERRKW 64
Query: 373 KQYLGTVSQTLLV----SHSLSGRPDDRCQVYLMSCNCQVYLISAKNLSNGFKKSERDET 428
Q V+ + V S+++ R D++ + N + + + L ++
Sbjct: 65 IQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQ 124
Query: 429 NISNFQIKNSSENLQD 444
++ ++ ++D
Sbjct: 125 DLLAEKVLAGKSKIED 140
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 55.0 bits (131), Expect = 2e-09
Identities = 35/138 (25%), Positives = 62/138 (44%), Gaps = 1/138 (0%)
Query: 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 368
+ + IL+LGLD AGK++I+ R+ +++ PT+GFN + Y N ++ ++DLGG
Sbjct: 16 KELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKN-LKLNVWDLGGQTSI 74
Query: 369 RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQVYLMSCNCQVYLISAKNLSNGFKKSERDET 428
R W+ Y + + V S L + L A L K+ +
Sbjct: 75 RPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGAL 134
Query: 429 NISNFQIKNSSENLQDNN 446
+ S + + L+D +
Sbjct: 135 SASEVSKELNLVELKDRS 152
Score = 50.4 bits (119), Expect = 8e-08
Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 6/77 (7%)
Query: 190 SLFDF-----RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVF 244
S+FD + + IL+LGLD AGK++I+ R+ +++ PT+GFN + Y N ++
Sbjct: 6 SMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKN-LKLN 64
Query: 245 LYDLGGSEDFRTIWKQY 261
++DLGG R W+ Y
Sbjct: 65 VWDLGGQTSIRPYWRCY 81
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 55.0 bits (131), Expect = 2e-09
Identities = 24/177 (13%), Positives = 58/177 (32%), Gaps = 10/177 (5%)
Query: 199 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIW 258
+L +GL ++GK+ + R+L ++ + A + N L + +
Sbjct: 3 VLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRF 62
Query: 259 KQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPILVLG- 317
+ S V +V + + L + S +L+
Sbjct: 63 QLLDRFKSSA------RAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACN 116
Query: 318 ---LDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTI 371
+ A + +I++ L + + +L T + ++ + L G +F +
Sbjct: 117 KQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQL 173
Score = 45.4 bits (106), Expect = 5e-06
Identities = 10/60 (16%), Positives = 23/60 (38%)
Query: 313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIW 372
+L +GL ++GK+ + R+L ++ + A + N L + +
Sbjct: 3 VLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRF 62
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 54.9 bits (131), Expect = 3e-09
Identities = 26/123 (21%), Positives = 43/123 (34%), Gaps = 17/123 (13%)
Query: 199 ILVLGLDNAGKSSIIKRIL-GEPIISLVPTVG--FNRARVEYGNK-YEVFLYDLGGSEDF 254
+L++G GKS ++ R + T+G F VE K ++ ++D G E F
Sbjct: 9 LLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERF 68
Query: 255 RTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPIL 314
RTI Y R +I+ V + +V L
Sbjct: 69 RTITSSYY-------------RGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKL 115
Query: 315 VLG 317
++G
Sbjct: 116 LVG 118
Score = 53.3 bits (127), Expect = 9e-09
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 313 ILVLGLDNAGKSSIIKRIL-GEPIISLVPTVG--FNRARVEYGNK-YEVFLYDLGGSEDF 368
+L++G GKS ++ R + T+G F VE K ++ ++D G E F
Sbjct: 9 LLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERF 68
Query: 369 RTIWKQYLGTVSQTLLV 385
RTI Y ++V
Sbjct: 69 RTITSSYYRGSHGIIIV 85
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 52.2 bits (124), Expect = 2e-08
Identities = 29/161 (18%), Positives = 59/161 (36%), Gaps = 8/161 (4%)
Query: 195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 254
R V IL+LG +GKS+ +K++ I PT G + E + D+GG
Sbjct: 1 RLVKILLLGAGESGKSTFLKQM--RIIHGQDPTKGIHEYDFE-IKNVPFKMVDVGGQRSE 57
Query: 255 RTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPIL 314
R W + +V+ S QV + ++++ + + + F +V I+
Sbjct: 58 RKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNR--VFSNVSII 115
Query: 315 VLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKY 355
+ + +++ I + + K+
Sbjct: 116 LFLNK---TDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKF 153
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 51.3 bits (122), Expect = 3e-08
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 313 ILVLGLDNAGKSSIIKRIL-GEPIISLVPTVG--FNRARVEYGNK-YEVFLYDLGGSEDF 368
+L++G GK+ ++ R + + T+G F +E K ++ ++D G E F
Sbjct: 9 LLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 68
Query: 369 RTIWKQYLGTVSQTLLV 385
RTI Y +LV
Sbjct: 69 RTITTAYYRGAMGIMLV 85
Score = 51.3 bits (122), Expect = 3e-08
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 199 ILVLGLDNAGKSSIIKRIL-GEPIISLVPTVG--FNRARVEYGNK-YEVFLYDLGGSEDF 254
+L++G GK+ ++ R + + T+G F +E K ++ ++D G E F
Sbjct: 9 LLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 68
Query: 255 RTIWKQY 261
RTI Y
Sbjct: 69 RTITTAY 75
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 51.3 bits (122), Expect = 3e-08
Identities = 22/101 (21%), Positives = 40/101 (39%), Gaps = 4/101 (3%)
Query: 313 ILVLGLDNAGKSSIIKRIL-GEPIISLVPTVG--FNRARVEY-GNKYEVFLYDLGGSEDF 368
I+++G GK+ +++R G T+G F VE G K ++ ++D G E F
Sbjct: 8 IVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERF 67
Query: 369 RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQVYLMSCNCQVY 409
R+I + Y + + +L +L
Sbjct: 68 RSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYAS 108
Score = 51.0 bits (121), Expect = 4e-08
Identities = 23/123 (18%), Positives = 45/123 (36%), Gaps = 17/123 (13%)
Query: 199 ILVLGLDNAGKSSIIKRIL-GEPIISLVPTVG--FNRARVEY-GNKYEVFLYDLGGSEDF 254
I+++G GK+ +++R G T+G F VE G K ++ ++D G E F
Sbjct: 8 IVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERF 67
Query: 255 RTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPIL 314
R+I + Y R+ ++ + + V +
Sbjct: 68 RSITQSYY-------------RSANALILTYDITCEESFRCLPEWLREIEQYASNKVITV 114
Query: 315 VLG 317
++G
Sbjct: 115 LVG 117
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 49.3 bits (116), Expect = 1e-07
Identities = 25/67 (37%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Query: 195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 254
R + +L+LGLDNAGK++I+K+ GE + ++ PT+GFN + +++ ++D+GG +
Sbjct: 1 RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNI-KTLEHRGFKLNIWDVGGQKSL 59
Query: 255 RTIWKQY 261
R+ W+ Y
Sbjct: 60 RSYWRNY 66
Score = 49.3 bits (116), Expect = 1e-07
Identities = 25/67 (37%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Query: 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 368
R + +L+LGLDNAGK++I+K+ GE + ++ PT+GFN + +++ ++D+GG +
Sbjct: 1 RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNI-KTLEHRGFKLNIWDVGGQKSL 59
Query: 369 RTIWKQY 375
R+ W+ Y
Sbjct: 60 RSYWRNY 66
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 48.8 bits (115), Expect = 2e-07
Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 190 SLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLG 249
+F + + IL+LGLD AGK++I+ ++ ++ +PTVGFN + ++D+G
Sbjct: 6 KIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNV-ETVTYKNVKFNVWDVG 64
Query: 250 GSEDFRTIWKQY 261
G + R +W+ Y
Sbjct: 65 GQDKIRPLWRHY 76
Score = 45.3 bits (106), Expect = 3e-06
Identities = 22/67 (32%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 368
+ + IL+LGLD AGK++I+ ++ ++ +PTVGFN + ++D+GG +
Sbjct: 11 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNV-ETVTYKNVKFNVWDVGGQDKI 69
Query: 369 RTIWKQY 375
R +W+ Y
Sbjct: 70 RPLWRHY 76
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 48.7 bits (115), Expect = 2e-07
Identities = 17/101 (16%), Positives = 38/101 (37%), Gaps = 4/101 (3%)
Query: 313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVE----YGNKYEVFLYDLGGSEDF 368
IL++G + GK+S + R + + +V+ + ++ ++D G E +
Sbjct: 8 ILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERY 67
Query: 369 RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQVYLMSCNCQVY 409
RTI Y +L+ + + Q + +
Sbjct: 68 RTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSW 108
Score = 47.6 bits (112), Expect = 5e-07
Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Query: 199 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVE----YGNKYEVFLYDLGGSEDF 254
IL++G + GK+S + R + + +V+ + ++ ++D G E +
Sbjct: 8 ILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERY 67
Query: 255 RTIWKQYL 262
RTI Y
Sbjct: 68 RTITTAYY 75
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 49.1 bits (116), Expect = 2e-07
Identities = 24/112 (21%), Positives = 40/112 (35%), Gaps = 14/112 (12%)
Query: 313 ILVLGLDNAGKSSIIKRIL-GEPIISLVPTVG--FNRARVEY-----------GNKYEVF 358
+L LG GK++ + R + + TVG F RV Y K +
Sbjct: 8 LLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQ 67
Query: 359 LYDLGGSEDFRTIWKQYLGTVSQTLLVSHSLSGRPDDRCQVYLMSCNCQVYL 410
L+D G E FR++ + LL+ S + + ++ Y
Sbjct: 68 LWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYC 119
Score = 46.8 bits (110), Expect = 1e-06
Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 15/85 (17%)
Query: 192 FDFRSVPILVLGLDNAGKSSIIKRIL-GEPIISLVPTVG--FNRARVEY----------- 237
+D+ + +L LG GK++ + R + + TVG F RV Y
Sbjct: 2 YDYL-IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGK 60
Query: 238 GNKYEVFLYDLGGSEDFRTIWKQYL 262
K + L+D G E FR++ +
Sbjct: 61 AFKVHLQLWDTAGQERFRSLTTAFF 85
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 48.8 bits (115), Expect = 2e-07
Identities = 28/138 (20%), Positives = 57/138 (41%), Gaps = 1/138 (0%)
Query: 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 368
+ ++++GLDNAGK++I+ + ++ PT+G N + N ++D+GG E
Sbjct: 14 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINN-TRFLMWDIGGQESL 72
Query: 369 RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQVYLMSCNCQVYLISAKNLSNGFKKSERDET 428
R+ W Y ++V S + L L A L K+ ++
Sbjct: 73 RSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM 132
Query: 429 NISNFQIKNSSENLQDNN 446
++ +++D+
Sbjct: 133 TVAEISQFLKLTSIKDHQ 150
Score = 47.7 bits (112), Expect = 5e-07
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 190 SLFDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLG 249
LF+ + ++++GLDNAGK++I+ + ++ PT+G N + N ++D+G
Sbjct: 9 RLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINN-TRFLMWDIG 67
Query: 250 GSEDFRTIWKQY 261
G E R+ W Y
Sbjct: 68 GQESLRSSWNTY 79
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 47.7 bits (112), Expect = 4e-07
Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 1/134 (0%)
Query: 313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIW 372
IL++GLD AGK++I+ ++ I++ +PT+GFN VEY N ++D+GG + R +W
Sbjct: 3 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN-ISFTVWDVGGQDKIRPLW 61
Query: 373 KQYLGTVSQTLLVSHSLSGRPDDRCQVYLMSCNCQVYLISAKNLSNGFKKSERDETNISN 432
+ Y + V S + + LM + L A L K+ + N +
Sbjct: 62 RHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAE 121
Query: 433 FQIKNSSENLQDNN 446
K +L+ N
Sbjct: 122 ITDKLGLHSLRHRN 135
Score = 46.2 bits (108), Expect = 1e-06
Identities = 25/63 (39%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 199 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIW 258
IL++GLD AGK++I+ ++ I++ +PT+GFN VEY N ++D+GG + R +W
Sbjct: 3 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN-ISFTVWDVGGQDKIRPLW 61
Query: 259 KQY 261
+ Y
Sbjct: 62 RHY 64
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 47.4 bits (111), Expect = 6e-07
Identities = 21/94 (22%), Positives = 35/94 (37%)
Query: 313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIW 372
+L LGLDNAGK++++ + + + +L PT + GN G + R
Sbjct: 3 LLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWK 62
Query: 373 KQYLGTVSQTLLVSHSLSGRPDDRCQVYLMSCNC 406
+ LV + R D+ N
Sbjct: 63 DYFPEVNGIVFLVDAADPERFDEARVELDALFNI 96
Score = 45.8 bits (107), Expect = 2e-06
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 199 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYD 247
+L LGLDNAGK++++ + + + +L PT + GN
Sbjct: 3 LLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDL 51
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 46.4 bits (109), Expect = 2e-06
Identities = 22/99 (22%), Positives = 38/99 (38%), Gaps = 4/99 (4%)
Query: 313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEY----GNKYEVFLYDLGGSEDF 368
IL++G GKSS++ R + + +V+ GNK ++ ++D G E F
Sbjct: 10 ILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERF 69
Query: 369 RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQVYLMSCNCQ 407
RT+ Y +LV + +L
Sbjct: 70 RTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETY 108
Score = 46.0 bits (108), Expect = 2e-06
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 199 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEY----GNKYEVFLYDLGGSEDF 254
IL++G GKSS++ R + + +V+ GNK ++ ++D G E F
Sbjct: 10 ILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERF 69
Query: 255 RTIWKQYL 262
RT+ Y
Sbjct: 70 RTLTPSYY 77
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 46.6 bits (109), Expect = 2e-06
Identities = 29/169 (17%), Positives = 55/169 (32%), Gaps = 12/169 (7%)
Query: 199 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIW 258
I++ G N+GK+S++ + + + V + +Y V L D G R
Sbjct: 6 IIIAGPQNSGKTSLLTLLTTDSVRPTV-VSQEPLSAADYDGSG-VTLVDFPGHVKLRYKL 63
Query: 259 KQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTS-ATHLPLVDFRSVPILVLG 317
YL T ++ + +++ + L + + IL+
Sbjct: 64 SDYLKTRAKFV-----KGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIAC 118
Query: 318 ----LDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDL 362
L A S IK L I ++ + VE E + +
Sbjct: 119 NKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENT 167
Score = 40.8 bits (94), Expect = 2e-04
Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIW 372
I++ G N+GK+S++ + + + V + +Y V L D G R
Sbjct: 6 IIIAGPQNSGKTSLLTLLTTDSVRPTV-VSQEPLSAADYDGSG-VTLVDFPGHVKLRYKL 63
Query: 373 KQYL 376
YL
Sbjct: 64 SDYL 67
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 46.1 bits (108), Expect = 2e-06
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Query: 195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 254
R + +L+LG +GKS+ IK++ S VPT G + D+GG
Sbjct: 1 RELKLLLLGTGESGKSTFIKQMRIIH-GSGVPTTGIIEYPF-DLQSVIFRMVDVGGQRSE 58
Query: 255 RTIWKQY 261
R W
Sbjct: 59 RRKWIHC 65
Score = 46.1 bits (108), Expect = 2e-06
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Query: 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 368
R + +L+LG +GKS+ IK++ S VPT G + D+GG
Sbjct: 1 RELKLLLLGTGESGKSTFIKQMRIIH-GSGVPTTGIIEYPF-DLQSVIFRMVDVGGQRSE 58
Query: 369 RTIWKQY 375
R W
Sbjct: 59 RRKWIHC 65
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 45.6 bits (107), Expect = 3e-06
Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Query: 199 ILVLGLDNAGKSSIIKRILG-----EPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSED 253
++++G GK+ ++ R IS V N+ G K ++ ++D G E
Sbjct: 9 VMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQER 68
Query: 254 FRTIWKQY 261
FR++ Y
Sbjct: 69 FRSVTHAY 76
Score = 45.6 bits (107), Expect = 3e-06
Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Query: 313 ILVLGLDNAGKSSIIKRILG-----EPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSED 367
++++G GK+ ++ R IS V N+ G K ++ ++D G E
Sbjct: 9 VMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQER 68
Query: 368 FRTIWKQY 375
FR++ Y
Sbjct: 69 FRSVTHAY 76
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 45.3 bits (106), Expect = 4e-06
Identities = 22/123 (17%), Positives = 44/123 (35%), Gaps = 17/123 (13%)
Query: 199 ILVLGLDNAGKSSIIKRILGEPIISLVPT---VGFNRARVEYGNKYEVF-LYDLGGSEDF 254
LV+G GKS ++ + + + V F + G KY ++D G E F
Sbjct: 8 FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF 67
Query: 255 RTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPIL 314
R++ + Y R L++ + T ++ +++ I+
Sbjct: 68 RSVTRSYY-------------RGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVII 114
Query: 315 VLG 317
+ G
Sbjct: 115 LCG 117
Score = 44.5 bits (104), Expect = 6e-06
Identities = 22/99 (22%), Positives = 37/99 (37%), Gaps = 4/99 (4%)
Query: 313 ILVLGLDNAGKSSIIKRILGEPIISLVPT---VGFNRARVEYGNKYEVF-LYDLGGSEDF 368
LV+G GKS ++ + + + V F + G KY ++D G E F
Sbjct: 8 FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF 67
Query: 369 RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQVYLMSCNCQ 407
R++ + Y + LLV S + +L
Sbjct: 68 RSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARML 106
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 45.1 bits (105), Expect = 5e-06
Identities = 25/113 (22%), Positives = 47/113 (41%), Gaps = 1/113 (0%)
Query: 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 368
++ ++ LGLDNAGK++++ + + + VPT+ + +DLGG
Sbjct: 12 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTT-FDLGGHIQA 70
Query: 369 RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQVYLMSCNCQVYLISAKNLSNGFK 421
R +WK YL ++ + + + L S + + L G K
Sbjct: 71 RRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNK 123
Score = 42.8 bits (99), Expect = 3e-05
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 189 LSLFDF--RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLY 246
L ++ ++ LGLDNAGK++++ + + + VPT+ + +
Sbjct: 4 LQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTT-F 62
Query: 247 DLGGSEDFRTIWKQY 261
DLGG R +WK Y
Sbjct: 63 DLGGHIQARRVWKNY 77
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 195
Score = 44.9 bits (105), Expect = 6e-06
Identities = 21/123 (17%), Positives = 41/123 (33%), Gaps = 7/123 (5%)
Query: 195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 254
R V +L+LG +GKS+I+K++ G + + + +D+GG
Sbjct: 1 REVKLLLLGAGESGKSTIVKQMKIIH----EAGTGIVETHFTFKDLHFKM-FDVGGQRSE 55
Query: 255 RTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPIL 314
R W V+ S V ++++ + F I+
Sbjct: 56 RKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFD--SICNNKWFTDTSII 113
Query: 315 VLG 317
+
Sbjct: 114 LFL 116
Score = 44.9 bits (105), Expect = 6e-06
Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 368
R V +L+LG +GKS+I+K++ G + + + +D+GG
Sbjct: 1 REVKLLLLGAGESGKSTIVKQMKIIH----EAGTGIVETHFTFKDLHFKM-FDVGGQRSE 55
Query: 369 RTIWKQYLGTVSQTLLVSHS 388
R W V+ +
Sbjct: 56 RKKWIHCFEGVTAIIFCVAL 75
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 44.2 bits (103), Expect = 7e-06
Identities = 33/138 (23%), Positives = 58/138 (42%), Gaps = 1/138 (0%)
Query: 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 368
+ V IL+LGLDNAGK++++K++ E I + PT GFN + +++ ++D+GG
Sbjct: 15 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNI-KSVQSQGFKLNVWDIGGQRKI 73
Query: 369 RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQVYLMSCNCQVYLISAKNLSNGFKKSERDET 428
R W+ Y + V S + + L + L L K+
Sbjct: 74 RPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA 133
Query: 429 NISNFQIKNSSENLQDNN 446
S + ++D
Sbjct: 134 PASEIAEGLNLHTIRDRV 151
Score = 40.3 bits (93), Expect = 1e-04
Identities = 36/147 (24%), Positives = 60/147 (40%), Gaps = 19/147 (12%)
Query: 195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 254
+ V IL+LGLDNAGK++++K++ E I + PT GFN + +++ ++D+GG
Sbjct: 15 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNI-KSVQSQGFKLNVWDIGGQRKI 73
Query: 255 RTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLP-LVDFRSVPI 313
R W+ Y + + + + T L VP+
Sbjct: 74 RPYWRSYF-------------ENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPV 120
Query: 314 LVLG----LDNAGKSSIIKRILGEPII 336
L+ L A +S I L I
Sbjct: 121 LIFANKQDLLTAAPASEIAEGLNLHTI 147
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 43.5 bits (101), Expect = 1e-05
Identities = 20/104 (19%), Positives = 42/104 (40%), Gaps = 4/104 (3%)
Query: 310 SVPILVLGLDNAGKSSIIKRIL-GEPIISLVPTVGFNRARVEYG---NKYEVFLYDLGGS 365
S+ +++LG GKSSI+ R + + + PT+G + + ++D G
Sbjct: 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQ 62
Query: 366 EDFRTIWKQYLGTVSQTLLVSHSLSGRPDDRCQVYLMSCNCQVY 409
E F ++ Y L+V + + + ++ + Q
Sbjct: 63 ERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQAS 106
Score = 38.1 bits (87), Expect = 9e-04
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 196 SVPILVLGLDNAGKSSIIKRIL-GEPIISLVPTVGFNRARVEYG---NKYEVFLYDLGGS 251
S+ +++LG GKSSI+ R + + + PT+G + + ++D G
Sbjct: 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQ 62
Query: 252 EDFRTIWKQY 261
E F ++ Y
Sbjct: 63 ERFASLAPMY 72
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 42.2 bits (98), Expect = 4e-05
Identities = 19/123 (15%), Positives = 41/123 (33%), Gaps = 17/123 (13%)
Query: 199 ILVLGLDNAGKSSIIKRILGE---PIISLVPTVGFNRARVEYGNKYEVF-LYDLGGSEDF 254
++++G GKS+++ R V F ++ K ++D G E +
Sbjct: 7 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERY 66
Query: 255 RTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPIL 314
R I Y R L++ + + + L ++ I+
Sbjct: 67 RRITSAYY-------------RGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM 113
Query: 315 VLG 317
++G
Sbjct: 114 LVG 116
Score = 41.8 bits (97), Expect = 5e-05
Identities = 23/125 (18%), Positives = 42/125 (33%), Gaps = 10/125 (8%)
Query: 313 ILVLGLDNAGKSSIIKRILGE---PIISLVPTVGFNRARVEYGNKYEVF-LYDLGGSEDF 368
++++G GKS+++ R V F ++ K ++D G E +
Sbjct: 7 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERY 66
Query: 369 RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQVYLM------SCNCQVYLISAKNLSNGFKK 422
R I Y LLV + + +L N + L+ K+ +
Sbjct: 67 RRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRA 126
Query: 423 SERDE 427
DE
Sbjct: 127 VPTDE 131
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 41.6 bits (96), Expect = 5e-05
Identities = 33/138 (23%), Positives = 56/138 (40%), Gaps = 1/138 (0%)
Query: 309 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 368
R + IL+LGLD AGK++I+ R+ +++ +PT+GFN + ++DLGG
Sbjct: 4 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNV-ETVTYKNLKFQVWDLGGLTSI 62
Query: 369 RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQVYLMSCNCQVYLISAKNLSNGFKKSERDET 428
R W+ Y + V S + L++ + L A + K+
Sbjct: 63 RPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM 122
Query: 429 NISNFQIKNSSENLQDNN 446
S L+D
Sbjct: 123 TSSEMANSLGLPALKDRK 140
Score = 40.5 bits (93), Expect = 1e-04
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 195 RSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 254
R + IL+LGLD AGK++I+ R+ +++ +PT+GFN + ++DLGG
Sbjct: 4 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNV-ETVTYKNLKFQVWDLGGLTSI 62
Query: 255 RTIWKQY 261
R W+ Y
Sbjct: 63 RPYWRCY 69
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 41.2 bits (95), Expect = 8e-05
Identities = 17/108 (15%), Positives = 39/108 (36%), Gaps = 7/108 (6%)
Query: 304 PLVDFRSVPILVLGLDNAGKSSIIKRILG----EPIISLVPTVGFNRARVEYGNKYEVFL 359
+ F+ +++LG GKSS++ R + E S + + + +
Sbjct: 3 KICQFK---LVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEI 59
Query: 360 YDLGGSEDFRTIWKQYLGTVSQTLLVSHSLSGRPDDRCQVYLMSCNCQ 407
+D G E + ++ Y ++V + R + ++ Q
Sbjct: 60 WDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQ 107
Score = 38.5 bits (88), Expect = 6e-04
Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 4/68 (5%)
Query: 199 ILVLGLDNAGKSSIIKRILG----EPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 254
+++LG GKSS++ R + E S + + + ++D G E +
Sbjct: 9 LVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERY 68
Query: 255 RTIWKQYL 262
++ Y
Sbjct: 69 HSLAPMYY 76
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 41.0 bits (95), Expect = 8e-05
Identities = 19/123 (15%), Positives = 44/123 (35%), Gaps = 17/123 (13%)
Query: 199 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEY----GNKYEVFLYDLGGSEDF 254
+++G GKS ++ + + ++ P G K ++ ++D G E F
Sbjct: 7 YIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERF 66
Query: 255 RTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPIL 314
R + + Y R L++ + + S + T + + I+
Sbjct: 67 RAVTRSYY-------------RGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVII 113
Query: 315 VLG 317
++G
Sbjct: 114 LIG 116
Score = 39.9 bits (92), Expect = 2e-04
Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Query: 313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEY----GNKYEVFLYDLGGSEDF 368
+++G GKS ++ + + ++ P G K ++ ++D G E F
Sbjct: 7 YIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERF 66
Query: 369 RTIWKQY 375
R + + Y
Sbjct: 67 RAVTRSY 73
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 40.3 bits (93), Expect = 1e-04
Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Query: 199 ILVLGLDNAGKSSIIKRIL-GEPIISLVPTVGFNRARVEY---GNKYEVFLYDLGGSEDF 254
++ LG + GK+S+I R + + T+G + + L+D G E F
Sbjct: 3 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERF 62
Query: 255 RTIWKQYL 262
R++ Y+
Sbjct: 63 RSLIPSYI 70
Score = 40.3 bits (93), Expect = 1e-04
Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Query: 313 ILVLGLDNAGKSSIIKRIL-GEPIISLVPTVGFNRARVEY---GNKYEVFLYDLGGSEDF 368
++ LG + GK+S+I R + + T+G + + L+D G E F
Sbjct: 3 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERF 62
Query: 369 RTIWKQYL 376
R++ Y+
Sbjct: 63 RSLIPSYI 70
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 39.3 bits (90), Expect = 3e-04
Identities = 24/141 (17%), Positives = 51/141 (36%), Gaps = 9/141 (6%)
Query: 310 SVPILVLGLDNAGKSSIIKRILG----EPIISLVPTVGFNRARVEYGNKYEVFLYDLGGS 365
++ ++V+G GKSS+I+R + + R + L+D G
Sbjct: 2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQ 61
Query: 366 EDFRTIWKQYLGTVSQTLLVSHSLSGRPDDRCQVYLMSCNCQVYLISAKNLSNGFKKSER 425
E+F I K Y +LV + DR +S + + ++ +++
Sbjct: 62 EEFDAITKAYYRGAQACVLVFST-----TDRESFEAISSWREKVVAEVGDIPTALVQNKI 116
Query: 426 DETNISNFQIKNSSENLQDNN 446
D + S + + + +
Sbjct: 117 DLLDDSCIKNEEAEGLAKRLK 137
Score = 35.1 bits (79), Expect = 0.010
Identities = 19/98 (19%), Positives = 33/98 (33%), Gaps = 4/98 (4%)
Query: 196 SVPILVLGLDNAGKSSIIKRILG----EPIISLVPTVGFNRARVEYGNKYEVFLYDLGGS 251
++ ++V+G GKSS+I+R + + R + L+D G
Sbjct: 2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQ 61
Query: 252 EDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQ 289
E+F I K Y L + I +
Sbjct: 62 EEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREK 99
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 38.4 bits (88), Expect = 7e-04
Identities = 17/103 (16%), Positives = 35/103 (33%), Gaps = 4/103 (3%)
Query: 309 RSVPILVLGLDNAGKSSIIKRILG----EPIISLVPTVGFNRARVEYGNKYEVFLYDLGG 364
R + + +LG GKSSI+ R + I + + ++ ++D G
Sbjct: 3 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAG 62
Query: 365 SEDFRTIWKQYLGTVSQTLLVSHSLSGRPDDRCQVYLMSCNCQ 407
E FR + Y + ++V + ++
Sbjct: 63 LERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQH 105
Score = 35.0 bits (79), Expect = 0.010
Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 4/71 (5%)
Query: 195 RSVPILVLGLDNAGKSSIIKRILG----EPIISLVPTVGFNRARVEYGNKYEVFLYDLGG 250
R + + +LG GKSSI+ R + I + + ++ ++D G
Sbjct: 3 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAG 62
Query: 251 SEDFRTIWKQY 261
E FR + Y
Sbjct: 63 LERFRALAPMY 73
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 38.0 bits (87), Expect = 0.001
Identities = 19/112 (16%), Positives = 39/112 (34%), Gaps = 9/112 (8%)
Query: 313 ILVLGLDNAGKSSIIKRILG----EPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 368
+++LG GK+S++ R + I+ + + G + + ++D G E F
Sbjct: 6 VVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERF 65
Query: 369 RTIWKQYLGTVSQTLLV-----SHSLSGRPDDRCQVYLMSCNCQVYLISAKN 415
+ Y + +LV S + ++ M N I
Sbjct: 66 HALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNK 117
Score = 36.1 bits (82), Expect = 0.005
Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
Query: 199 ILVLGLDNAGKSSIIKRILG----EPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDF 254
+++LG GK+S++ R + I+ + + G + + ++D G E F
Sbjct: 6 VVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERF 65
Query: 255 RTIWKQYL 262
+ Y
Sbjct: 66 HALGPIYY 73
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 37.7 bits (86), Expect = 0.002
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 195 RSVPILVLGLDNAGKSSIIKRIL-GEPIISLVPTVGFNRAR--VEYGNKYEVFLYDLGGS 251
+++ +V+G GK+ ++ + VPTV N A + G Y + L+D G
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 252 EDFRTIWKQY 261
ED+ +
Sbjct: 62 EDYDRLRPLS 71
Score = 37.7 bits (86), Expect = 0.002
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 309 RSVPILVLGLDNAGKSSIIKRIL-GEPIISLVPTVGFNRAR--VEYGNKYEVFLYDLGGS 365
+++ +V+G GK+ ++ + VPTV N A + G Y + L+D G
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 366 EDFRTIWKQY 375
ED+ +
Sbjct: 62 EDYDRLRPLS 71
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 36.9 bits (84), Expect = 0.002
Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 5/80 (6%)
Query: 313 ILVLGLDNAGKSSIIKRIL-GEPIISLVPTVGFNRARVEYGNKYEVFLYDL----GGSED 367
I+V+G N GK+ + R G T+G + E L G
Sbjct: 5 IIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERF 64
Query: 368 FRTIWKQYLGTVSQTLLVSH 387
+++ + Y V + V
Sbjct: 65 RKSMVQHYYRNVHAVVFVYD 84
Score = 34.6 bits (78), Expect = 0.012
Identities = 18/95 (18%), Positives = 33/95 (34%), Gaps = 4/95 (4%)
Query: 199 ILVLGLDNAGKSSIIKRIL-GEPIISLVPTVGFNRARVEYG---NKYEVFLYDLGGSEDF 254
I+V+G N GK+ + R G T+G + + ++ L+D G E F
Sbjct: 5 IIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERF 64
Query: 255 RTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQ 289
R Q+ + D + + +
Sbjct: 65 RKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIE 99
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 37.4 bits (85), Expect = 0.002
Identities = 16/108 (14%), Positives = 40/108 (37%), Gaps = 5/108 (4%)
Query: 313 ILVLGLDNAGKSSIIKRIL-GEPIISLVPTVGFNRARVEYGNK----YEVFLYDLGGSED 367
+++LG GK+S++ R + + T+G + E + ++D G E
Sbjct: 5 VIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQER 64
Query: 368 FRTIWKQYLGTVSQTLLVSHSLSGRPDDRCQVYLMSCNCQVYLISAKN 415
F+++ + +LV + + + + + S +
Sbjct: 65 FQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPET 112
Score = 35.4 bits (80), Expect = 0.007
Identities = 13/68 (19%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Query: 199 ILVLGLDNAGKSSIIKRIL-GEPIISLVPTVGFNRARVEYGNK----YEVFLYDLGGSED 253
+++LG GK+S++ R + + T+G + E + ++D G E
Sbjct: 5 VIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQER 64
Query: 254 FRTIWKQY 261
F+++ +
Sbjct: 65 FQSLGVAF 72
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain
{Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 37.2 bits (85), Expect = 0.002
Identities = 18/104 (17%), Positives = 39/104 (37%), Gaps = 7/104 (6%)
Query: 313 ILVLGLDNAGKSSIIKRILGE-PIISLVP--TVGFNRARVEYGNKYEVFLYDLGG----S 365
+ ++G + GKS+++ + P I+ T+ N VE + + DL G +
Sbjct: 4 VGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGA 63
Query: 366 EDFRTIWKQYLGTVSQTLLVSHSLSGRPDDRCQVYLMSCNCQVY 409
+ Q+L + +T ++ H + + Y
Sbjct: 64 HQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQE 107
Score = 31.4 bits (70), Expect = 0.16
Identities = 16/77 (20%), Positives = 33/77 (42%), Gaps = 7/77 (9%)
Query: 199 ILVLGLDNAGKSSIIKRILGE-PIISLVP--TVGFNRARVEYGNKYEVFLYDLGG----S 251
+ ++G + GKS+++ + P I+ T+ N VE + + DL G +
Sbjct: 4 VGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGA 63
Query: 252 EDFRTIWKQYLGTVSQT 268
+ Q+L + +T
Sbjct: 64 HQGVGLGHQFLRHIERT 80
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 37.3 bits (85), Expect = 0.002
Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 199 ILVLGLDNAGKSSIIKRIL-GEPIISLVPTVGFNRARVEYGN--KYEVFLYDLGGSEDFR 255
++++G GK+ ++ + VPTV N + + E+ L+D G ED+
Sbjct: 5 LVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYD 64
Query: 256 TIWKQY 261
+
Sbjct: 65 RLRPLS 70
Score = 37.3 bits (85), Expect = 0.002
Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 313 ILVLGLDNAGKSSIIKRIL-GEPIISLVPTVGFNRARVEYGN--KYEVFLYDLGGSEDFR 369
++++G GK+ ++ + VPTV N + + E+ L+D G ED+
Sbjct: 5 LVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYD 64
Query: 370 TIWKQY 375
+
Sbjct: 65 RLRPLS 70
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 37.0 bits (84), Expect = 0.002
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 199 ILVLGLDNAGKSSIIKRIL-GEPIISLVPTVGFNRARVEYGNKYEVF 244
+ ++GL +GK++ + I G+ ++PTVGFN ++ GN
Sbjct: 5 LTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKL 51
Score = 37.0 bits (84), Expect = 0.002
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 313 ILVLGLDNAGKSSIIKRIL-GEPIISLVPTVGFNRARVEYGNKYEVF 358
+ ++GL +GK++ + I G+ ++PTVGFN ++ GN
Sbjct: 5 LTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKL 51
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 36.9 bits (84), Expect = 0.002
Identities = 21/123 (17%), Positives = 45/123 (36%), Gaps = 13/123 (10%)
Query: 199 ILVLGLDNAGKSSIIKRIL-GEPIISLVPTVGFNRARVE---YGNKYEVFLYDLGGSEDF 254
+++LG GKSS++ R + + L T+G + G+ + ++D G E F
Sbjct: 9 VILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERF 68
Query: 255 RTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPIL 314
R++ + L + + + + + + S P +
Sbjct: 69 RSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFI---------YYADVKEPESFPFV 119
Query: 315 VLG 317
+LG
Sbjct: 120 ILG 122
Score = 36.5 bits (83), Expect = 0.003
Identities = 18/94 (19%), Positives = 36/94 (38%), Gaps = 4/94 (4%)
Query: 313 ILVLGLDNAGKSSIIKRIL-GEPIISLVPTVGFNRARVE---YGNKYEVFLYDLGGSEDF 368
+++LG GKSS++ R + + L T+G + G+ + ++D G E F
Sbjct: 9 VILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERF 68
Query: 369 RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQVYLM 402
R++ + LL + +
Sbjct: 69 RSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKK 102
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 184
Score = 37.0 bits (84), Expect = 0.002
Identities = 12/96 (12%), Positives = 34/96 (35%), Gaps = 4/96 (4%)
Query: 199 ILVLGLDNAGKSSIIKRIL-GEPIISLVPTVG---FNRARVEYGNKYEVFLYDLGGSEDF 254
+++LG GK+S++ + + + T+G + + + ++D G E F
Sbjct: 5 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERF 64
Query: 255 RTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQV 290
+++ + L + + +
Sbjct: 65 QSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEF 100
Score = 36.6 bits (83), Expect = 0.003
Identities = 12/103 (11%), Positives = 34/103 (33%), Gaps = 11/103 (10%)
Query: 313 ILVLGLDNAGKSSIIKRIL-GEPIISLVPTVG---FNRARVEYGNKYEVFLYDLGGSEDF 368
+++LG GK+S++ + + + T+G + + + ++D G E F
Sbjct: 5 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERF 64
Query: 369 RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQVYLMSCNCQVYLI 411
+++ + + D + +
Sbjct: 65 QSLGVAFYRGADCCV-------LVFDVTAPNTFKTLDSWRDEF 100
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 36.8 bits (84), Expect = 0.003
Identities = 16/123 (13%), Positives = 37/123 (30%), Gaps = 17/123 (13%)
Query: 199 ILVLGLDNAGKSSIIKRIL-GEPIISLVPTVGFNRARVEYGNKYEVFLYDL---GGSEDF 254
+++G GKS ++ + T+G + + G E F
Sbjct: 6 YIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESF 65
Query: 255 RTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLVDFRSVPIL 314
R+I + Y R L++ + + + ++ I+
Sbjct: 66 RSITRSYY-------------RGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIM 112
Query: 315 VLG 317
++G
Sbjct: 113 LIG 115
Score = 36.0 bits (82), Expect = 0.005
Identities = 16/93 (17%), Positives = 30/93 (32%), Gaps = 4/93 (4%)
Query: 313 ILVLGLDNAGKSSIIKRIL-GEPIISLVPTVGFNRARVEYGNKYEVFLYDL---GGSEDF 368
+++G GKS ++ + T+G + + G E F
Sbjct: 6 YIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESF 65
Query: 369 RTIWKQYLGTVSQTLLVSHSLSGRPDDRCQVYL 401
R+I + Y + LLV + +L
Sbjct: 66 RSITRSYYRGAAGALLVYDITRRETFNHLTSWL 98
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 37.4 bits (86), Expect = 0.004
Identities = 32/177 (18%), Positives = 55/177 (31%), Gaps = 24/177 (13%)
Query: 290 VSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSIIKRILGE------PIISLVPTVG 343
S I D L L + V G +GKSS I + G + V V
Sbjct: 42 NSAISDALKEIDSSVLN------VAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT 95
Query: 344 FNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYL--GTVSQTLLVSHSLSGRP---DDRCQ 398
R ++ N V +DL G YL + + R D
Sbjct: 96 MERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIA 155
Query: 399 VYLMSCNCQVYLISAK------NLSNGFKKSERDETNISNFQIKNSSENLQDNNTSD 449
+ + Y + K N ++G ++ E + + + N ++N ++
Sbjct: 156 KAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIR-LNCVNTFRENGIAE 211
Score = 32.8 bits (74), Expect = 0.096
Identities = 18/70 (25%), Positives = 25/70 (35%), Gaps = 6/70 (8%)
Query: 199 ILVLGLDNAGKSSIIKRILGE------PIISLVPTVGFNRARVEYGNKYEVFLYDLGGSE 252
+ V G +GKSS I + G + V V R ++ N V +DL G
Sbjct: 59 VAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIG 118
Query: 253 DFRTIWKQYL 262
YL
Sbjct: 119 STNFPPDTYL 128
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 35.3 bits (80), Expect = 0.008
Identities = 21/127 (16%), Positives = 48/127 (37%), Gaps = 17/127 (13%)
Query: 195 RSVPILVLGLDNAGKSSIIKRIL-GEPIISLVPTVGFNRARVEYGNKYEV--FLYDLGGS 251
R ++VLG GKS++ + + G I PT+ + + + D G+
Sbjct: 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGT 61
Query: 252 EDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHL-PLVDFRS 310
E F ++ Y+ + Q ++++ + D + + +
Sbjct: 62 EQFASMRDLYI-------------KNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEK 108
Query: 311 VPILVLG 317
VP++++G
Sbjct: 109 VPVILVG 115
Score = 33.0 bits (74), Expect = 0.044
Identities = 18/102 (17%), Positives = 37/102 (36%), Gaps = 3/102 (2%)
Query: 309 RSVPILVLGLDNAGKSSIIKRIL-GEPIISLVPTVGFNRARVEYGNKYEV--FLYDLGGS 365
R ++VLG GKS++ + + G I PT+ + + + D G+
Sbjct: 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGT 61
Query: 366 EDFRTIWKQYLGTVSQTLLVSHSLSGRPDDRCQVYLMSCNCQ 407
E F ++ Y+ +LV ++ + +
Sbjct: 62 EQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRV 103
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 34.6 bits (78), Expect = 0.013
Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 195 RSVP---ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLY 246
RS+P + VLG +GKSS+I R L L T + + +
Sbjct: 1 RSIPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVL 55
Score = 34.6 bits (78), Expect = 0.013
Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 309 RSVP---ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLY 360
RS+P + VLG +GKSS+I R L L T + + +
Sbjct: 1 RSIPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVL 55
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 33.9 bits (76), Expect = 0.019
Identities = 10/44 (22%), Positives = 16/44 (36%)
Query: 199 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYE 242
+L+LG GKS++ + G G R + E
Sbjct: 4 VLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEE 47
Score = 33.9 bits (76), Expect = 0.019
Identities = 10/44 (22%), Positives = 16/44 (36%)
Query: 313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYE 356
+L+LG GKS++ + G G R + E
Sbjct: 4 VLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEE 47
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 34.3 bits (77), Expect = 0.021
Identities = 16/104 (15%), Positives = 34/104 (32%), Gaps = 3/104 (2%)
Query: 199 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIW 258
I+ G N GKS++I R+ G+ + G R ++ + D+ G +
Sbjct: 3 IIFAGRSNVGKSTLIYRLTGKKVRR-GKRPGVTR-KIIEIEWKNHKIIDMPGFGFMMGLP 60
Query: 259 KQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATH 302
K+ + + + + V P+ +
Sbjct: 61 KEV-QERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEK 103
Score = 32.4 bits (72), Expect = 0.071
Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Query: 313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIW 372
I+ G N GKS++I R+ G+ + G R ++ + D+ G +
Sbjct: 3 IIFAGRSNVGKSTLIYRLTGKKVRR-GKRPGVTR-KIIEIEWKNHKIIDMPGFGFMMGLP 60
Query: 373 KQY 375
K+
Sbjct: 61 KEV 63
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain
{Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 33.9 bits (76), Expect = 0.027
Identities = 18/104 (17%), Positives = 42/104 (40%), Gaps = 7/104 (6%)
Query: 313 ILVLGLDNAGKSSIIKRILGEPII---SLVPTVGFNRARVEYGNKYEVFLYDLGG----S 365
+ ++G NAGKSS++ + T+ N VE + L D+ G +
Sbjct: 4 VGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGA 63
Query: 366 EDFRTIWKQYLGTVSQTLLVSHSLSGRPDDRCQVYLMSCNCQVY 409
+ + + ++L +++T ++ + L + + + Y
Sbjct: 64 SEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAY 107
Score = 31.9 bits (71), Expect = 0.11
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 199 ILVLGLDNAGKSSIIKRILGE 219
+ ++G NAGKSS++ +
Sbjct: 4 VGLVGYPNAGKSSLLAAMTRA 24
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 33.6 bits (75), Expect = 0.028
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 195 RSVPILVLGLDNAGKSSIIKRILGE 219
S + ++G N GKS+++ +LG
Sbjct: 4 YSGFVAIVGKPNVGKSTLLNNLLGV 28
Score = 33.6 bits (75), Expect = 0.028
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 309 RSVPILVLGLDNAGKSSIIKRILGE 333
S + ++G N GKS+++ +LG
Sbjct: 4 YSGFVAIVGKPNVGKSTLLNNLLGV 28
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 33.0 bits (74), Expect = 0.037
Identities = 8/21 (38%), Positives = 16/21 (76%)
Query: 199 ILVLGLDNAGKSSIIKRILGE 219
++++G N GKS+++ R+L E
Sbjct: 3 MVIVGKPNVGKSTLLNRLLNE 23
Score = 33.0 bits (74), Expect = 0.037
Identities = 8/21 (38%), Positives = 16/21 (76%)
Query: 313 ILVLGLDNAGKSSIIKRILGE 333
++++G N GKS+++ R+L E
Sbjct: 3 MVIVGKPNVGKSTLLNRLLNE 23
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 33.0 bits (74), Expect = 0.047
Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Query: 199 ILVLGLDNAGKSSIIKRIL-GEPIISLVPTVGFNRARV--EYGNKYEVFLYDLGGSEDFR 255
+V+G GK+ ++ VPTV + A G +Y + LYD G ED+
Sbjct: 12 CVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYD 71
Query: 256 TIWKQY 261
+
Sbjct: 72 RLRPLS 77
Score = 33.0 bits (74), Expect = 0.047
Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Query: 313 ILVLGLDNAGKSSIIKRIL-GEPIISLVPTVGFNRARV--EYGNKYEVFLYDLGGSEDFR 369
+V+G GK+ ++ VPTV + A G +Y + LYD G ED+
Sbjct: 12 CVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYD 71
Query: 370 TIWKQY 375
+
Sbjct: 72 RLRPLS 77
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE
(MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 32.0 bits (71), Expect = 0.080
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 199 ILVLGLDNAGKSSIIKRILGE 219
+++ G NAGKSS++ + G
Sbjct: 4 VVIAGRPNAGKSSLLNALAGR 24
Score = 32.0 bits (71), Expect = 0.080
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 313 ILVLGLDNAGKSSIIKRILGE 333
+++ G NAGKSS++ + G
Sbjct: 4 VVIAGRPNAGKSSLLNALAGR 24
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 32.4 bits (72), Expect = 0.082
Identities = 6/21 (28%), Positives = 15/21 (71%)
Query: 199 ILVLGLDNAGKSSIIKRILGE 219
+L++G N GKS++ +++ +
Sbjct: 3 VLIVGRPNVGKSTLFNKLVKK 23
Score = 32.4 bits (72), Expect = 0.082
Identities = 6/21 (28%), Positives = 15/21 (71%)
Query: 313 ILVLGLDNAGKSSIIKRILGE 333
+L++G N GKS++ +++ +
Sbjct: 3 VLIVGRPNVGKSTLFNKLVKK 23
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 32.5 bits (73), Expect = 0.091
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 303 LPLVDFRSVPILVLGLDNAGKSSIIKRILGEPI 335
L D S+ ILV+G GKSS + I+GE +
Sbjct: 25 LKQEDVNSLTILVMGKGGVGKSSTVNSIIGERV 57
Score = 32.1 bits (72), Expect = 0.12
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 193 DFRSVPILVLGLDNAGKSSIIKRILGEPI 221
D S+ ILV+G GKSS + I+GE +
Sbjct: 29 DVNSLTILVMGKGGVGKSSTVNSIIGERV 57
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 31.5 bits (70), Expect = 0.15
Identities = 21/122 (17%), Positives = 43/122 (35%), Gaps = 14/122 (11%)
Query: 199 ILVLGLDNAGKSSIIKRIL-GEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTI 257
+ V G GKSS++ R + G S +PTV +V +K
Sbjct: 5 VAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDK-----------SICTLQ 53
Query: 258 WKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQVSGIPDELTSATHLPLV--DFRSVPILV 315
G+ + R ++++ + + + + + D S+PI++
Sbjct: 54 ITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIML 113
Query: 316 LG 317
+G
Sbjct: 114 VG 115
Score = 29.6 bits (65), Expect = 0.54
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 313 ILVLGLDNAGKSSIIKRIL-GEPIISLVPTV 342
+ V G GKSS++ R + G S +PTV
Sbjct: 5 VAVFGAGGVGKSSLVLRFVKGTFRESYIPTV 35
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 31.6 bits (70), Expect = 0.15
Identities = 7/25 (28%), Positives = 15/25 (60%)
Query: 195 RSVPILVLGLDNAGKSSIIKRILGE 219
++ + ++G N GKS++ IL +
Sbjct: 7 DAIKVAIVGRPNVGKSTLFNAILNK 31
Score = 31.6 bits (70), Expect = 0.15
Identities = 7/25 (28%), Positives = 15/25 (60%)
Query: 309 RSVPILVLGLDNAGKSSIIKRILGE 333
++ + ++G N GKS++ IL +
Sbjct: 7 DAIKVAIVGRPNVGKSTLFNAILNK 31
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 31.6 bits (70), Expect = 0.16
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 199 ILVLGLDNAGKSSIIKRIL-GEPIISLVPTVGFNRARVEYGNKYEVFLYD 247
I+V+G GK++++ + VPTV N + + L
Sbjct: 5 IVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSL 54
Score = 31.6 bits (70), Expect = 0.16
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 313 ILVLGLDNAGKSSIIKRIL-GEPIISLVPTVGFNRARVEYGNKYEVFLYD 361
I+V+G GK++++ + VPTV N + + L
Sbjct: 5 IVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSL 54
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 31.2 bits (69), Expect = 0.21
Identities = 8/21 (38%), Positives = 16/21 (76%)
Query: 199 ILVLGLDNAGKSSIIKRILGE 219
I ++G N GKS+++ ++LG+
Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQ 28
Score = 31.2 bits (69), Expect = 0.21
Identities = 8/21 (38%), Positives = 16/21 (76%)
Query: 313 ILVLGLDNAGKSSIIKRILGE 333
I ++G N GKS+++ ++LG+
Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQ 28
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 30.9 bits (68), Expect = 0.21
Identities = 23/104 (22%), Positives = 44/104 (42%), Gaps = 3/104 (2%)
Query: 309 RSVPILVLGLDNAGKSSIIKRIL-GEPIISLVPTVGFNRARVEYGNKYEVFL--YDLGGS 365
+S I +LG + GKSS+ + + G+ + S PT+ ++ N E L D G
Sbjct: 3 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQ 62
Query: 366 EDFRTIWKQYLGTVSQTLLVSHSLSGRPDDRCQVYLMSCNCQVY 409
+++ + Y ++ +LV S + + +V V
Sbjct: 63 DEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVG 106
Score = 30.1 bits (66), Expect = 0.39
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 195 RSVPILVLGLDNAGKSSIIKRILG 218
+S I +LG + GKSS+ + +
Sbjct: 3 KSRKIAILGYRSVGKSSLTIQFVE 26
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 30.8 bits (68), Expect = 0.24
Identities = 22/147 (14%), Positives = 48/147 (32%), Gaps = 9/147 (6%)
Query: 306 VDFRSVPILVLGLDNAGKSSIIKRILG----EPIISLVPTVGFNRARVEYGNKYEVFLYD 361
V F+ ++++G GK++ +KR L + ++ + + ++D
Sbjct: 2 VQFK---LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWD 58
Query: 362 LGGSEDFRTIWKQYLGTVSQTLLVSHSLSGRPDDRCQVYLMSCNCQVYLISAKNLSNGFK 421
G E F + Y +++ S + I N K
Sbjct: 59 TAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGN--K 116
Query: 422 KSERDETNISNFQIKNSSENLQDNNTS 448
+D + + + +NLQ + S
Sbjct: 117 VDIKDRKVKAKSIVFHRKKNLQYYDIS 143
Score = 29.6 bits (65), Expect = 0.62
Identities = 6/19 (31%), Positives = 13/19 (68%)
Query: 199 ILVLGLDNAGKSSIIKRIL 217
++++G GK++ +KR L
Sbjct: 6 LVLVGDGGTGKTTFVKRHL 24
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 30.9 bits (68), Expect = 0.26
Identities = 13/114 (11%), Positives = 31/114 (27%), Gaps = 5/114 (4%)
Query: 297 LTSAT---HLPLVDFRSVPILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGN 353
+ SA HLP + + G NAGKSS + + + ++ +
Sbjct: 2 VMSAPDIRHLP--SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFE 59
Query: 354 KYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSHSLSGRPDDRCQVYLMSCNCQ 407
+ + + ++ + L + + +
Sbjct: 60 VADGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLK 113
Score = 28.6 bits (62), Expect = 1.3
Identities = 9/91 (9%), Positives = 26/91 (28%)
Query: 199 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIW 258
+ G NAGKSS + + + ++ + + + +
Sbjct: 19 VAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVP 78
Query: 259 KQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQ 289
++ + + R L++ +
Sbjct: 79 EEMKRKWQRALGEYLEKRQSLQGLVVLMDIR 109
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 29.6 bits (65), Expect = 0.57
Identities = 13/93 (13%), Positives = 32/93 (34%), Gaps = 3/93 (3%)
Query: 195 RSVPILVLGLDNAGKSSIIKRIL-GEPIISLVPTV--GFNRARVEYGNKYEVFLYDLGGS 251
+++ +V+G GK+ ++ +PTV ++ + G + L+D G
Sbjct: 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 63
Query: 252 EDFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIM 284
ED+ + + + +
Sbjct: 64 EDYDRLRPLSYPQTDVSLICFSLVSPASFENVR 96
Score = 29.2 bits (64), Expect = 0.85
Identities = 4/25 (16%), Positives = 12/25 (48%)
Query: 309 RSVPILVLGLDNAGKSSIIKRILGE 333
+++ +V+G GK+ ++
Sbjct: 4 QAIKCVVVGDGAVGKTCLLISYTTN 28
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin
(Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 29.5 bits (65), Expect = 0.58
Identities = 4/19 (21%), Positives = 12/19 (63%)
Query: 199 ILVLGLDNAGKSSIIKRIL 217
++++G GKS++ + +
Sbjct: 7 VIMVGSGGVGKSALTLQFM 25
Score = 29.5 bits (65), Expect = 0.58
Identities = 4/19 (21%), Positives = 12/19 (63%)
Query: 313 ILVLGLDNAGKSSIIKRIL 331
++++G GKS++ + +
Sbjct: 7 VIMVGSGGVGKSALTLQFM 25
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 29.6 bits (65), Expect = 0.62
Identities = 21/133 (15%), Positives = 47/133 (35%), Gaps = 3/133 (2%)
Query: 313 ILVLGLDNAGKSSIIKRIL-GEPIISLVPTVG--FNRARVEYGNKYEVFLYDLGGSEDFR 369
++V+G GKS++ + + + PT+ + + V + + D G E+F
Sbjct: 8 LVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFG 67
Query: 370 TIWKQYLGTVSQTLLVSHSLSGRPDDRCQVYLMSCNCQVYLISAKNLSNGFKKSERDETN 429
+ +QY+ T LLV + + + G K +
Sbjct: 68 AMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQ 127
Query: 430 ISNFQIKNSSENL 442
++ + + + L
Sbjct: 128 VTQEEGQQLARQL 140
Score = 27.3 bits (59), Expect = 3.6
Identities = 5/19 (26%), Positives = 12/19 (63%)
Query: 199 ILVLGLDNAGKSSIIKRIL 217
++V+G GKS++ + +
Sbjct: 8 LVVVGGGGVGKSALTIQFI 26
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 29.7 bits (65), Expect = 0.65
Identities = 17/155 (10%), Positives = 45/155 (29%), Gaps = 5/155 (3%)
Query: 295 DELTSATHLPLVDFRSVP-ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEY-- 351
+ + SA +P I + G N GKSS I ++ ++ + + +
Sbjct: 7 EIVISAVKPEQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYI 66
Query: 352 --GNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTLLVSHSLSGRPDDRCQVYLMSCNCQVY 409
+ V + G ++ ++ + + + + L + S +
Sbjct: 67 INDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQM 126
Query: 410 LISAKNLSNGFKKSERDETNISNFQIKNSSENLQD 444
K I + ++ ++
Sbjct: 127 YEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQ 161
Score = 29.0 bits (63), Expect = 1.2
Identities = 11/91 (12%), Positives = 32/91 (35%), Gaps = 4/91 (4%)
Query: 199 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEY----GNKYEVFLYDLGGSEDF 254
I + G N GKSS I ++ ++ + + + + V + G ++
Sbjct: 26 IALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKVS 85
Query: 255 RTIWKQYLGTVSQTPLGRPDSRTCQVYLIMC 285
++ + + + R + + + +
Sbjct: 86 KSEREAWGRMIETYITTREELKAVVQIVDLR 116
>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum
[TaxId: 44689]}
Length = 306
Score = 29.4 bits (65), Expect = 0.92
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 199 ILVLGLDNAGKSSIIKRILGEPI 221
I+V+G ++GKSS+++ I+G
Sbjct: 27 IVVVGSQSSGKSSVLENIVGRDF 49
Score = 29.4 bits (65), Expect = 0.92
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 313 ILVLGLDNAGKSSIIKRILGEPI 335
I+V+G ++GKSS+++ I+G
Sbjct: 27 IVVVGSQSSGKSSVLENIVGRDF 49
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 28.8 bits (63), Expect = 1.1
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 199 ILVLGLDNAGKSSIIKRIL-GEPIISLVPTVGFN 231
+ + G GKS+++ R L I PT+
Sbjct: 5 LAIFGRAGVGKSALVVRFLTKRFIWEYDPTLEST 38
Score = 28.8 bits (63), Expect = 1.1
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 313 ILVLGLDNAGKSSIIKRIL-GEPIISLVPTVGFN 345
+ + G GKS+++ R L I PT+
Sbjct: 5 LAIFGRAGVGKSALVVRFLTKRFIWEYDPTLEST 38
>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 299
Score = 29.1 bits (64), Expect = 1.2
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 199 ILVLGLDNAGKSSIIKRILGEPI 221
I V+G +AGKSS+++ +G
Sbjct: 29 IAVVGGQSAGKSSVLENFVGRDF 51
Score = 29.1 bits (64), Expect = 1.2
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 313 ILVLGLDNAGKSSIIKRILGEPI 335
I V+G +AGKSS+++ +G
Sbjct: 29 IAVVGGQSAGKSSVLENFVGRDF 51
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 28.9 bits (63), Expect = 1.2
Identities = 5/23 (21%), Positives = 13/23 (56%)
Query: 195 RSVPILVLGLDNAGKSSIIKRIL 217
+ ++V+G GKS++ + +
Sbjct: 5 ETHKLVVVGGGGVGKSALTIQFI 27
Score = 28.9 bits (63), Expect = 1.2
Identities = 5/23 (21%), Positives = 13/23 (56%)
Query: 309 RSVPILVLGLDNAGKSSIIKRIL 331
+ ++V+G GKS++ + +
Sbjct: 5 ETHKLVVVGGGGVGKSALTIQFI 27
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 28.0 bits (61), Expect = 1.8
Identities = 9/61 (14%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
Query: 199 ILVLGLDNAGKSSIIKRIL-GEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTI 257
++V+G GKS++ +++ + PT+ + + + L L +
Sbjct: 6 LVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS 65
Query: 258 W 258
Sbjct: 66 A 66
Score = 28.0 bits (61), Expect = 1.8
Identities = 9/61 (14%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
Query: 313 ILVLGLDNAGKSSIIKRIL-GEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTI 371
++V+G GKS++ +++ + PT+ + + + L L +
Sbjct: 6 LVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS 65
Query: 372 W 372
Sbjct: 66 A 66
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 27.8 bits (60), Expect = 2.6
Identities = 5/21 (23%), Positives = 11/21 (52%)
Query: 199 ILVLGLDNAGKSSIIKRILGE 219
++++G GKS++ G
Sbjct: 6 VVLIGEQGVGKSTLANIFAGV 26
Score = 27.8 bits (60), Expect = 2.6
Identities = 5/21 (23%), Positives = 11/21 (52%)
Query: 313 ILVLGLDNAGKSSIIKRILGE 333
++++G GKS++ G
Sbjct: 6 VVLIGEQGVGKSTLANIFAGV 26
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 169
Score = 27.3 bits (59), Expect = 3.0
Identities = 11/66 (16%), Positives = 26/66 (39%), Gaps = 3/66 (4%)
Query: 199 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLG---GSEDFR 255
++V+G GKS++ + + + + + + D+ G E+F
Sbjct: 7 LVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFS 66
Query: 256 TIWKQY 261
+ +QY
Sbjct: 67 AMREQY 72
Score = 27.3 bits (59), Expect = 3.0
Identities = 11/66 (16%), Positives = 26/66 (39%), Gaps = 3/66 (4%)
Query: 313 ILVLGLDNAGKSSIIKRILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLG---GSEDFR 369
++V+G GKS++ + + + + + + D+ G E+F
Sbjct: 7 LVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFS 66
Query: 370 TIWKQY 375
+ +QY
Sbjct: 67 AMREQY 72
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 27.3 bits (59), Expect = 3.3
Identities = 15/97 (15%), Positives = 32/97 (32%), Gaps = 2/97 (2%)
Query: 195 RSVPILVLGLDNAGKSSIIKRIL-GEPIISLVPTVG-FNRARVEYGNKYEVFLYDLGGSE 252
R ++VLG GKS++ + + G + PT+ R +VE + +
Sbjct: 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGT 61
Query: 253 DFRTIWKQYLGTVSQTPLGRPDSRTCQVYLIMCGVHQ 289
+ T + Q + + + +
Sbjct: 62 EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLRE 98
Score = 27.3 bits (59), Expect = 3.8
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 309 RSVPILVLGLDNAGKSSIIKRIL 331
R ++VLG GKS++ + +
Sbjct: 2 REYKLVVLGSGGVGKSALTVQFV 24
>d2nqra2 b.103.1.1 (A:7-177) Molybdenum cofactor biosynthesis
protein MoeA, N-terminal and linker domains {Escherichia
coli [TaxId: 562]}
Length = 171
Score = 27.4 bits (60), Expect = 3.5
Identities = 17/144 (11%), Positives = 41/144 (28%), Gaps = 16/144 (11%)
Query: 215 RILGEPIISLVPTVGFNRARVEYGNKYEVFLYDLGGSEDFRTIWKQYLGTVSQTPLGRPD 274
RIL ++S + GF+ + ++ Y V L D+ + K + G
Sbjct: 32 RILASDVVSPLDVPGFDNSAMD---GYAVRLADIASGQPLPVAGKSFAGQPYHGEWPAGT 88
Query: 275 SRTCQVYLIMCG-------VHQVSGIPDELTSATHLPLVDFRSVPILVLGLDNAGKSSII 327
+ Q + + + + G + + + +
Sbjct: 89 CIRIMTGAPVPEGCEAVVMQEQTEQMDNGVRFTAEVRSGQNIRRR----GENISAGAVVF 144
Query: 328 K--RILGEPIISLVPTVGFNRARV 349
L + ++ ++G V
Sbjct: 145 PAGTRLTTAELPVIASLGIAEVPV 168
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 27.3 bits (59), Expect = 3.8
Identities = 5/18 (27%), Positives = 12/18 (66%)
Query: 199 ILVLGLDNAGKSSIIKRI 216
+V G+ GKS+++ ++
Sbjct: 4 GIVTGIPGVGKSTVLAKV 21
Score = 27.3 bits (59), Expect = 3.8
Identities = 5/18 (27%), Positives = 12/18 (66%)
Query: 313 ILVLGLDNAGKSSIIKRI 330
+V G+ GKS+++ ++
Sbjct: 4 GIVTGIPGVGKSTVLAKV 21
>d1w85b1 c.36.1.7 (B:1-192) Pyruvate dehydrogenase E1-beta, PdhB,
N-terminal domain {Bacillus stearothermophilus [TaxId:
1422]}
Length = 192
Score = 27.3 bits (60), Expect = 3.8
Identities = 16/96 (16%), Positives = 28/96 (29%), Gaps = 15/96 (15%)
Query: 1 MCYKLYKVHIICRTCFGNLNPVVNLESLFTEKPPSLKMNLEKFGGISKNSSICATSYKVH 60
Y + I R+ FG L S +LE + S
Sbjct: 103 RTGGRYHMPITIRSPFGGGVHTPELHS----------DSLEGLVAQQPGLKVVIPSTPYD 152
Query: 61 IICRIRTFANSIEPIEMVEHKMLRDVVLYNMYKAEI 96
+ + +P+ +EH LY ++ E+
Sbjct: 153 AKGLLISAIRDNDPVIFLEHLK-----LYRSFRQEV 183
>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal
domain {Methanococcus maripaludis [TaxId: 39152]}
Length = 179
Score = 27.0 bits (58), Expect = 4.5
Identities = 6/26 (23%), Positives = 16/26 (61%)
Query: 193 DFRSVPILVLGLDNAGKSSIIKRILG 218
DF+++ + + G + GK+++ K +
Sbjct: 2 DFKNINLGIFGHIDHGKTTLSKVLTE 27
Score = 27.0 bits (58), Expect = 4.5
Identities = 6/26 (23%), Positives = 16/26 (61%)
Query: 307 DFRSVPILVLGLDNAGKSSIIKRILG 332
DF+++ + + G + GK+++ K +
Sbjct: 2 DFKNINLGIFGHIDHGKTTLSKVLTE 27
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 26.9 bits (58), Expect = 4.7
Identities = 3/18 (16%), Positives = 9/18 (50%)
Query: 199 ILVLGLDNAGKSSIIKRI 216
++V G+ G ++ +
Sbjct: 4 VVVTGVPGVGSTTSSQLA 21
Score = 26.9 bits (58), Expect = 4.7
Identities = 3/18 (16%), Positives = 9/18 (50%)
Query: 313 ILVLGLDNAGKSSIIKRI 330
++V G+ G ++ +
Sbjct: 4 VVVTGVPGVGSTTSSQLA 21
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Length = 189
Score = 26.7 bits (58), Expect = 5.3
Identities = 16/133 (12%), Positives = 39/133 (29%), Gaps = 6/133 (4%)
Query: 309 RSVPILVLGLDNAGKSSIIKRI---LGEPIIS---LVPTVGFNRARVEYGNKYEVFLYDL 362
R + ++G +GK ++ RI +S L+ + K + L
Sbjct: 5 RLLRAAIMGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKL 64
Query: 363 GGSEDFRTIWKQYLGTVSQTLLVSHSLSGRPDDRCQVYLMSCNCQVYLISAKNLSNGFKK 422
+ + L ++Q + + V ++ +
Sbjct: 65 IPDDVMTRLVLHELKNLTQYNWLLDGFPRTLPQAEALDRAYQIDTVINLNVPFEVIKQRL 124
Query: 423 SERDETNISNFQI 435
++R ET + +
Sbjct: 125 TDRPETVVKRLKA 137
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 26.5 bits (57), Expect = 6.7
Identities = 5/24 (20%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 197 VPILVL-GLDNAGKSSIIKRILGE 219
+P+L GK++++K+++
Sbjct: 2 IPLLAFAAWSGTGKTTLLKKLIPA 25
Score = 26.5 bits (57), Expect = 6.7
Identities = 5/24 (20%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 311 VPILVL-GLDNAGKSSIIKRILGE 333
+P+L GK++++K+++
Sbjct: 2 IPLLAFAAWSGTGKTTLLKKLIPA 25
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 26.5 bits (57), Expect = 7.0
Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Query: 199 ILVLGLDNAGKSSIIKRI---LGEPIISL 224
+L+ G +GKS+I + + G P +
Sbjct: 7 LLLSGHPGSGKSTIAEALANLPGVPKVHF 35
Score = 26.5 bits (57), Expect = 7.0
Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Query: 313 ILVLGLDNAGKSSIIKRI---LGEPIISL 338
+L+ G +GKS+I + + G P +
Sbjct: 7 LLLSGHPGSGKSTIAEALANLPGVPKVHF 35
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 26.1 bits (56), Expect = 9.0
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 198 PILVLGLDNAGKSSIIKRILGE 219
PI++ G GKS+++K++ E
Sbjct: 3 PIVISGPSGTGKSTLLKKLFAE 24
Score = 26.1 bits (56), Expect = 9.0
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 312 PILVLGLDNAGKSSIIKRILGE 333
PI++ G GKS+++K++ E
Sbjct: 3 PIVISGPSGTGKSTLLKKLFAE 24
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 26.1 bits (56), Expect = 9.2
Identities = 8/22 (36%), Positives = 16/22 (72%)
Query: 198 PILVLGLDNAGKSSIIKRILGE 219
P+++ G AGKS+++K++ E
Sbjct: 2 PVVLSGPSGAGKSTLLKKLFQE 23
Score = 26.1 bits (56), Expect = 9.2
Identities = 8/22 (36%), Positives = 16/22 (72%)
Query: 312 PILVLGLDNAGKSSIIKRILGE 333
P+++ G AGKS+++K++ E
Sbjct: 2 PVVLSGPSGAGKSTLLKKLFQE 23
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.406
Gapped
Lambda K H
0.267 0.0467 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,946,247
Number of extensions: 89853
Number of successful extensions: 512
Number of sequences better than 10.0: 1
Number of HSP's gapped: 485
Number of HSP's successfully gapped: 166
Length of query: 537
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 447
Effective length of database: 1,171,896
Effective search space: 523837512
Effective search space used: 523837512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.6 bits)