BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16306
(302 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2COG|A Chain A, Crystal Structure Of Oxidized Human Cytosolic
Branched-Chain Aminotransferase Complexed With
4-Methylvalerate
pdb|2COG|B Chain B, Crystal Structure Of Oxidized Human Cytosolic
Branched-Chain Aminotransferase Complexed With
4-Methylvalerate
pdb|2COI|A Chain A, Crystal Structure Of Oxidized Human Cytosolic
Branched-Chain Aminotransferase Complexed With
Gabapentin
pdb|2COI|B Chain B, Crystal Structure Of Oxidized Human Cytosolic
Branched-Chain Aminotransferase Complexed With
Gabapentin
pdb|2COJ|A Chain A, Crystal Structure Of Reduced Human Cytosolic
Branched-Chain Aminotransferase Complexed With
Gabapentin
pdb|2COJ|B Chain B, Crystal Structure Of Reduced Human Cytosolic
Branched-Chain Aminotransferase Complexed With
Gabapentin
Length = 386
Score = 185 bits (470), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 81/140 (57%), Positives = 113/140 (80%), Gaps = 1/140 (0%)
Query: 15 LQPKPEVSQLKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLHPAAKVLHYSVELFE 74
L+ KP+ + L FGTVFTDHML +E++ + G W+ P + PL+ L+LHP + LHY+VELFE
Sbjct: 38 LKEKPDPNNLVFGTVFTDHMLTVEWSSEFG-WEKPHIKPLQNLSLHPGSSALHYAVELFE 96
Query: 75 GMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTT 134
G+KA+RGVD IR+F+P +NMDRM RSA+RA LP FD EE+++C+ +L+++DQEWVP++T
Sbjct: 97 GLKAFRGVDNKIRLFQPNLNMDRMYRSAVRATLPVFDKEELLECIQQLVKLDQEWVPYST 156
Query: 135 AASLYIRPTLIGTDLFEGMK 154
+ASLYIRPT IGT+ G+K
Sbjct: 157 SASLYIRPTFIGTEPSLGVK 176
Score = 120 bits (301), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 50/78 (64%), Positives = 69/78 (88%)
Query: 225 DLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWV 284
+LFEG+KA+RGVD IR+F+P +NMDRM RSA+RA LP FD EE+++C+ +L+++DQEWV
Sbjct: 93 ELFEGLKAFRGVDNKIRLFQPNLNMDRMYRSAVRATLPVFDKEELLECIQQLVKLDQEWV 152
Query: 285 PHTTAASLYIRPTLIGTD 302
P++T+ASLYIRPT IGT+
Sbjct: 153 PYSTSASLYIRPTFIGTE 170
Score = 119 bits (299), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 51/84 (60%), Positives = 72/84 (85%)
Query: 148 DLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLPQFDPEEMIQCLNRLIQIDQEWV 207
+LFEG+KA+RGVD IR+F+P +NMDRM +SA+RA LP FD EE+++C+ +L+++DQEWV
Sbjct: 93 ELFEGLKAFRGVDNKIRLFQPNLNMDRMYRSAVRATLPVFDKEELLECIQQLVKLDQEWV 152
Query: 208 PHTTAASLYIRPTLIGTDLFEGMK 231
P++T+ASLYIRPT IGT+ G+K
Sbjct: 153 PYSTSASLYIRPTFIGTEPSLGVK 176
>pdb|2ABJ|A Chain A, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate.
pdb|2ABJ|D Chain D, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate.
pdb|2ABJ|G Chain G, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate.
pdb|2ABJ|J Chain J, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate
Length = 366
Score = 183 bits (464), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 80/140 (57%), Positives = 112/140 (80%), Gaps = 1/140 (0%)
Query: 15 LQPKPEVSQLKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLHPAAKVLHYSVELFE 74
L+ KP+ + L FGTVFTDHML +E++ + G W+ P + PL+ L+LHP + LHY+VELFE
Sbjct: 18 LKEKPDPNNLVFGTVFTDHMLTVEWSSEFG-WEKPHIKPLQNLSLHPGSSALHYAVELFE 76
Query: 75 GMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTT 134
G+KA+RGVD IR+F+P +NMDRM RSA+RA LP FD EE+++C+ +L+++DQEWVP++T
Sbjct: 77 GLKAFRGVDNKIRLFQPNLNMDRMYRSAVRATLPVFDKEELLECIQQLVKLDQEWVPYST 136
Query: 135 AASLYIRPTLIGTDLFEGMK 154
+ASLYIRP IGT+ G+K
Sbjct: 137 SASLYIRPAFIGTEPSLGVK 156
Score = 118 bits (296), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 49/80 (61%), Positives = 68/80 (85%)
Query: 223 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQE 282
+LFEG+KA+RGVD IR+F+P +NMDRM RSA+RA LP FD EE+++C+ +L+++DQE
Sbjct: 71 AVELFEGLKAFRGVDNKIRLFQPNLNMDRMYRSAVRATLPVFDKEELLECIQQLVKLDQE 130
Query: 283 WVPHTTAASLYIRPTLIGTD 302
WVP++T+ASLYIRP IGT+
Sbjct: 131 WVPYSTSASLYIRPAFIGTE 150
Score = 118 bits (295), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 50/86 (58%), Positives = 71/86 (82%)
Query: 146 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLPQFDPEEMIQCLNRLIQIDQE 205
+LFEG+KA+RGVD IR+F+P +NMDRM +SA+RA LP FD EE+++C+ +L+++DQE
Sbjct: 71 AVELFEGLKAFRGVDNKIRLFQPNLNMDRMYRSAVRATLPVFDKEELLECIQQLVKLDQE 130
Query: 206 WVPHTTAASLYIRPTLIGTDLFEGMK 231
WVP++T+ASLYIRP IGT+ G+K
Sbjct: 131 WVPYSTSASLYIRPAFIGTEPSLGVK 156
>pdb|2HHF|B Chain B, X-ray Crystal Structure Of Oxidized Human Mitochondrial
Branched Chain Aminotransferase (hbcatm)
Length = 365
Score = 160 bits (405), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 74/149 (49%), Positives = 104/149 (69%), Gaps = 3/149 (2%)
Query: 1 QFQEIHVQLCSPEQLQPKPEVSQ-LKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTL 59
F+ +QL ++ KP + L FG FTDHML +E+N++ GW PR+ P + LTL
Sbjct: 4 SFKAADLQLEMTQKPHKKPGPGEPLVFGKTFTDHMLMVEWNDK--GWGQPRIQPFQNLTL 61
Query: 60 HPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCL 119
HPA+ LHYS++LFEGMKA++G D +R+FRP +NMDRM RSA+R LP FD E+++C+
Sbjct: 62 HPASSSLHYSLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRLXLPSFDKLELLECI 121
Query: 120 NRLIQIDQEWVPHTTAASLYIRPTLIGTD 148
RLI++D++WVP SLY+RP LIG +
Sbjct: 122 RRLIEVDKDWVPDAAGTSLYVRPVLIGNE 150
Score = 104 bits (260), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 49/103 (47%), Positives = 68/103 (66%), Gaps = 5/103 (4%)
Query: 200 IQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRA 259
IQ Q H ++SL+ LFEGMKA++G D +R+FRP +NMDRM RSA+R
Sbjct: 53 IQPFQNLTLHPASSSLHY-----SLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRL 107
Query: 260 GLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTD 302
LP FD E+++C+ RLI++D++WVP SLY+RP LIG +
Sbjct: 108 XLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPVLIGNE 150
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 68/103 (66%), Gaps = 5/103 (4%)
Query: 123 IQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRA 182
IQ Q H ++SL+ LFEGMKA++G D +R+FRP +NMDRM +SA+R
Sbjct: 53 IQPFQNLTLHPASSSLHY-----SLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRL 107
Query: 183 GLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTD 225
LP FD E+++C+ RLI++D++WVP SLY+RP LIG +
Sbjct: 108 XLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPVLIGNE 150
>pdb|2HDK|A Chain A, Crystal Structure Of Cys315ala-Cys318ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
pdb|2HDK|B Chain B, Crystal Structure Of Cys315ala-Cys318ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
Length = 365
Score = 160 bits (405), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 74/149 (49%), Positives = 104/149 (69%), Gaps = 3/149 (2%)
Query: 1 QFQEIHVQLCSPEQLQPKPEVSQ-LKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTL 59
F+ +QL ++ KP + L FG FTDHML +E+N++ GW PR+ P + LTL
Sbjct: 4 SFKAADLQLEMTQKPHKKPGPGEPLVFGKTFTDHMLMVEWNDK--GWGQPRIQPFQNLTL 61
Query: 60 HPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCL 119
HPA+ LHYS++LFEGMKA++G D +R+FRP +NMDRM RSA+R LP FD E+++C+
Sbjct: 62 HPASSSLHYSLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECI 121
Query: 120 NRLIQIDQEWVPHTTAASLYIRPTLIGTD 148
RLI++D++WVP SLY+RP LIG +
Sbjct: 122 RRLIEVDKDWVPDAAGTSLYVRPVLIGNE 150
Score = 104 bits (259), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 49/103 (47%), Positives = 68/103 (66%), Gaps = 5/103 (4%)
Query: 200 IQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRA 259
IQ Q H ++SL+ LFEGMKA++G D +R+FRP +NMDRM RSA+R
Sbjct: 53 IQPFQNLTLHPASSSLHY-----SLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRL 107
Query: 260 GLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTD 302
LP FD E+++C+ RLI++D++WVP SLY+RP LIG +
Sbjct: 108 CLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPVLIGNE 150
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 68/103 (66%), Gaps = 5/103 (4%)
Query: 123 IQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRA 182
IQ Q H ++SL+ LFEGMKA++G D +R+FRP +NMDRM +SA+R
Sbjct: 53 IQPFQNLTLHPASSSLHY-----SLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRL 107
Query: 183 GLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTD 225
LP FD E+++C+ RLI++D++WVP SLY+RP LIG +
Sbjct: 108 CLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPVLIGNE 150
>pdb|2HG8|A Chain A, Crystal Structure Of Cys315ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase Complexed
With Its Substrate Mimic, N-Methyl Leucine.
pdb|2HG8|B Chain B, Crystal Structure Of Cys315ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase Complexed
With Its Substrate Mimic, N-Methyl Leucine.
pdb|2HGX|A Chain A, Crystal Structure Of Cys315ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
pdb|2HGX|B Chain B, Crystal Structure Of Cys315ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
Length = 365
Score = 160 bits (405), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 74/149 (49%), Positives = 104/149 (69%), Gaps = 3/149 (2%)
Query: 1 QFQEIHVQLCSPEQLQPKPEVSQ-LKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTL 59
F+ +QL ++ KP + L FG FTDHML +E+N++ GW PR+ P + LTL
Sbjct: 4 SFKAADLQLEMTQKPHKKPGPGEPLVFGKTFTDHMLMVEWNDK--GWGQPRIQPFQNLTL 61
Query: 60 HPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCL 119
HPA+ LHYS++LFEGMKA++G D +R+FRP +NMDRM RSA+R LP FD E+++C+
Sbjct: 62 HPASSSLHYSLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECI 121
Query: 120 NRLIQIDQEWVPHTTAASLYIRPTLIGTD 148
RLI++D++WVP SLY+RP LIG +
Sbjct: 122 RRLIEVDKDWVPDAAGTSLYVRPVLIGNE 150
Score = 104 bits (259), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 49/103 (47%), Positives = 68/103 (66%), Gaps = 5/103 (4%)
Query: 200 IQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRA 259
IQ Q H ++SL+ LFEGMKA++G D +R+FRP +NMDRM RSA+R
Sbjct: 53 IQPFQNLTLHPASSSLHY-----SLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRL 107
Query: 260 GLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTD 302
LP FD E+++C+ RLI++D++WVP SLY+RP LIG +
Sbjct: 108 CLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPVLIGNE 150
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 68/103 (66%), Gaps = 5/103 (4%)
Query: 123 IQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRA 182
IQ Q H ++SL+ LFEGMKA++G D +R+FRP +NMDRM +SA+R
Sbjct: 53 IQPFQNLTLHPASSSLHY-----SLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRL 107
Query: 183 GLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTD 225
LP FD E+++C+ RLI++D++WVP SLY+RP LIG +
Sbjct: 108 CLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPVLIGNE 150
>pdb|2HGW|A Chain A, Crystal Structure Of Cys318ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
pdb|2HGW|B Chain B, Crystal Structure Of Cys318ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
Length = 365
Score = 160 bits (405), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 74/149 (49%), Positives = 104/149 (69%), Gaps = 3/149 (2%)
Query: 1 QFQEIHVQLCSPEQLQPKPEVSQ-LKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTL 59
F+ +QL ++ KP + L FG FTDHML +E+N++ GW PR+ P + LTL
Sbjct: 4 SFKAADLQLEMTQKPHKKPGPGEPLVFGKTFTDHMLMVEWNDK--GWGQPRIQPFQNLTL 61
Query: 60 HPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCL 119
HPA+ LHYS++LFEGMKA++G D +R+FRP +NMDRM RSA+R LP FD E+++C+
Sbjct: 62 HPASSSLHYSLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECI 121
Query: 120 NRLIQIDQEWVPHTTAASLYIRPTLIGTD 148
RLI++D++WVP SLY+RP LIG +
Sbjct: 122 RRLIEVDKDWVPDAAGTSLYVRPVLIGNE 150
Score = 104 bits (259), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 49/103 (47%), Positives = 68/103 (66%), Gaps = 5/103 (4%)
Query: 200 IQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRA 259
IQ Q H ++SL+ LFEGMKA++G D +R+FRP +NMDRM RSA+R
Sbjct: 53 IQPFQNLTLHPASSSLHY-----SLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRL 107
Query: 260 GLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTD 302
LP FD E+++C+ RLI++D++WVP SLY+RP LIG +
Sbjct: 108 CLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPVLIGNE 150
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 68/103 (66%), Gaps = 5/103 (4%)
Query: 123 IQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRA 182
IQ Q H ++SL+ LFEGMKA++G D +R+FRP +NMDRM +SA+R
Sbjct: 53 IQPFQNLTLHPASSSLHY-----SLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRL 107
Query: 183 GLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTD 225
LP FD E+++C+ RLI++D++WVP SLY+RP LIG +
Sbjct: 108 CLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPVLIGNE 150
>pdb|1EKF|A Chain A, Crystallographic Structure Of Human Branched Chain Amino
Acid Aminotransferase (Mitochondrial) Complexed With
Pyridoxal-5'- Phosphate At 1.95 Angstroms (Orthorhombic
Form)
pdb|1EKF|B Chain B, Crystallographic Structure Of Human Branched Chain Amino
Acid Aminotransferase (Mitochondrial) Complexed With
Pyridoxal-5'- Phosphate At 1.95 Angstroms (Orthorhombic
Form)
pdb|1EKP|A Chain A, Crystal Structure Of Human Branched Chain Amino Acid
Aminotransferase (Mitochondrial) Complexed With
Pyridoxal-5'-Phosphate At 2.5 Angstroms (Monoclinic
Form).
pdb|1EKP|B Chain B, Crystal Structure Of Human Branched Chain Amino Acid
Aminotransferase (Mitochondrial) Complexed With
Pyridoxal-5'-Phosphate At 2.5 Angstroms (Monoclinic
Form).
pdb|1EKV|A Chain A, Human Branched Chain Amino Acid Aminotransferase
(Mitochondrial): Three Dimensional Structure Of Enzyme
Inactivated By Tris Bound To The Pyridoxal-5'-Phosphate
On One End And Active Site Lys202 Nz On The Other.
pdb|1EKV|B Chain B, Human Branched Chain Amino Acid Aminotransferase
(Mitochondrial): Three Dimensional Structure Of Enzyme
Inactivated By Tris Bound To The Pyridoxal-5'-Phosphate
On One End And Active Site Lys202 Nz On The Other.
pdb|1KT8|A Chain A, Human Branched Chain Amino Acid Aminotransferase
(Mitochondrial): Three Dimensional Structure Of Enzyme
In Its Ketimine Form With The Substrate L-Isoleucine
pdb|1KT8|B Chain B, Human Branched Chain Amino Acid Aminotransferase
(Mitochondrial): Three Dimensional Structure Of Enzyme
In Its Ketimine Form With The Substrate L-Isoleucine
pdb|1KTA|A Chain A, Human Branched Chain Amino Acid Aminotransferase : Three
Dimensional Structure Of The Enzyme In Its Pyridoxamine
Phosphate Form.
pdb|1KTA|B Chain B, Human Branched Chain Amino Acid Aminotransferase : Three
Dimensional Structure Of The Enzyme In Its Pyridoxamine
Phosphate Form.
pdb|2A1H|A Chain A, X-Ray Crystal Structure Of Human Mitochondrial Branched
Chain Aminotransferase (Bcatm) Complexed With Gabapentin
pdb|2A1H|B Chain B, X-Ray Crystal Structure Of Human Mitochondrial Branched
Chain Aminotransferase (Bcatm) Complexed With Gabapentin
Length = 365
Score = 160 bits (404), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 74/149 (49%), Positives = 104/149 (69%), Gaps = 3/149 (2%)
Query: 1 QFQEIHVQLCSPEQLQPKPEVSQ-LKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTL 59
F+ +QL ++ KP + L FG FTDHML +E+N++ GW PR+ P + LTL
Sbjct: 4 SFKAADLQLEMTQKPHKKPGPGEPLVFGKTFTDHMLMVEWNDK--GWGQPRIQPFQNLTL 61
Query: 60 HPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCL 119
HPA+ LHYS++LFEGMKA++G D +R+FRP +NMDRM RSA+R LP FD E+++C+
Sbjct: 62 HPASSSLHYSLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECI 121
Query: 120 NRLIQIDQEWVPHTTAASLYIRPTLIGTD 148
RLI++D++WVP SLY+RP LIG +
Sbjct: 122 RRLIEVDKDWVPDAAGTSLYVRPVLIGNE 150
Score = 104 bits (259), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 49/103 (47%), Positives = 68/103 (66%), Gaps = 5/103 (4%)
Query: 200 IQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRA 259
IQ Q H ++SL+ LFEGMKA++G D +R+FRP +NMDRM RSA+R
Sbjct: 53 IQPFQNLTLHPASSSLHY-----SLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRL 107
Query: 260 GLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTD 302
LP FD E+++C+ RLI++D++WVP SLY+RP LIG +
Sbjct: 108 CLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPVLIGNE 150
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 68/103 (66%), Gaps = 5/103 (4%)
Query: 123 IQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRA 182
IQ Q H ++SL+ LFEGMKA++G D +R+FRP +NMDRM +SA+R
Sbjct: 53 IQPFQNLTLHPASSSLHY-----SLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRL 107
Query: 183 GLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTD 225
LP FD E+++C+ RLI++D++WVP SLY+RP LIG +
Sbjct: 108 CLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPVLIGNE 150
>pdb|2HHF|A Chain A, X-ray Crystal Structure Of Oxidized Human Mitochondrial
Branched Chain Aminotransferase (hbcatm)
Length = 365
Score = 157 bits (397), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 73/149 (48%), Positives = 103/149 (69%), Gaps = 3/149 (2%)
Query: 1 QFQEIHVQLCSPEQLQPKPEVSQ-LKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTL 59
F+ +QL ++ KP + L FG FTDHML +E+N++ GW PR+ P + LTL
Sbjct: 4 SFKAADLQLEMTQKPHKKPGPGEPLVFGKTFTDHMLMVEWNDK--GWGQPRIQPFQNLTL 61
Query: 60 HPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCL 119
HPA+ LHYS++LFEGMKA++G D +R+FRP +NMDRM RSA+R LP FD E+++C+
Sbjct: 62 HPASSSLHYSLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRLXLPSFDKLELLECI 121
Query: 120 NRLIQIDQEWVPHTTAASLYIRPTLIGTD 148
RLI++D++WVP SL +RP LIG +
Sbjct: 122 RRLIEVDKDWVPDAAGTSLXVRPVLIGNE 150
Score = 101 bits (251), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 67/103 (65%), Gaps = 5/103 (4%)
Query: 200 IQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRA 259
IQ Q H ++SL+ LFEGMKA++G D +R+FRP +NMDRM RSA+R
Sbjct: 53 IQPFQNLTLHPASSSLHY-----SLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRL 107
Query: 260 GLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTD 302
LP FD E+++C+ RLI++D++WVP SL +RP LIG +
Sbjct: 108 XLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLXVRPVLIGNE 150
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 67/103 (65%), Gaps = 5/103 (4%)
Query: 123 IQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRA 182
IQ Q H ++SL+ LFEGMKA++G D +R+FRP +NMDRM +SA+R
Sbjct: 53 IQPFQNLTLHPASSSLHY-----SLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRL 107
Query: 183 GLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTD 225
LP FD E+++C+ RLI++D++WVP SL +RP LIG +
Sbjct: 108 XLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLXVRPVLIGNE 150
>pdb|3DTF|A Chain A, Structural Analysis Of Mycobacterial Branched Chain
Aminotransferase- Implications For Inhibitor Design
pdb|3DTF|B Chain B, Structural Analysis Of Mycobacterial Branched Chain
Aminotransferase- Implications For Inhibitor Design
pdb|3DTG|A Chain A, Structural Analysis Of Mycobacterial Branched Chain
Aminotransferase- Implications For Inhibitor Design
pdb|3DTG|B Chain B, Structural Analysis Of Mycobacterial Branched Chain
Aminotransferase- Implications For Inhibitor Design
Length = 372
Score = 108 bits (271), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 78/130 (60%), Gaps = 2/130 (1%)
Query: 26 FGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGH 85
FG +TDHM+ I++ G W +V P + L P+A VLHY E+FEG+KAYR DG
Sbjct: 35 FGKYYTDHMVSIDYTVDEG-WHNAQVIPYGPIQLDPSAIVLHYGQEIFEGLKAYRWADGS 93
Query: 86 IRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTA-ASLYIRPTL 144
I FRPE N R+ SA R +P+ E I+ L +LI +D++WVP SLY+RP +
Sbjct: 94 IVSFRPEANAARLQSSARRLAIPELPEEVFIESLRQLIAVDEKWVPPAGGEESLYLRPFV 153
Query: 145 IGTDLFEGMK 154
I T+ G++
Sbjct: 154 IATEPGLGVR 163
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 54/87 (62%), Gaps = 1/87 (1%)
Query: 146 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLPQFDPEEMIQCLNRLIQIDQE 205
G ++FEG+KAYR DG I FRPE N R+ SA R +P+ E I+ L +LI +D++
Sbjct: 77 GQEIFEGLKAYRWADGSIVSFRPEANAARLQSSARRLAIPELPEEVFIESLRQLIAVDEK 136
Query: 206 WVPHTTA-ASLYIRPTLIGTDLFEGMK 231
WVP SLY+RP +I T+ G++
Sbjct: 137 WVPPAGGEESLYLRPFVIATEPGLGVR 163
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 223 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQE 282
G ++FEG+KAYR DG I FRPE N R+ SA R +P+ E I+ L +LI +D++
Sbjct: 77 GQEIFEGLKAYRWADGSIVSFRPEANAARLQSSARRLAIPELPEEVFIESLRQLIAVDEK 136
Query: 283 WVPHTTA-ASLYIRPTLIGTD 302
WVP SLY+RP +I T+
Sbjct: 137 WVPPAGGEESLYLRPFVIATE 157
>pdb|3JZ6|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Branched
Chain Aminotransferase In Complex With
Pyridoxal-5'-Phosphate At 1.9 Angstrom.
pdb|3JZ6|B Chain B, Crystal Structure Of Mycobacterium Smegmatis Branched
Chain Aminotransferase In Complex With
Pyridoxal-5'-Phosphate At 1.9 Angstrom
Length = 373
Score = 108 bits (271), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 55/124 (44%), Positives = 75/124 (60%), Gaps = 2/124 (1%)
Query: 26 FGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGH 85
FG +TDHM+ I++ G W +V P + L P+A VLHY E+FEG+KAYR DG
Sbjct: 36 FGKYYTDHMVSIDYTVDEG-WHNAQVIPYGPIQLDPSAIVLHYGQEIFEGLKAYRWADGS 94
Query: 86 IRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTA-ASLYIRPTL 144
I FRPE N R+ SA R +P+ E I+ L +LI +D++WVP SLY+RP +
Sbjct: 95 IVSFRPEANAARLQSSARRLAIPELPEEVFIESLRQLIAVDEKWVPPAGGEESLYLRPFV 154
Query: 145 IGTD 148
I T+
Sbjct: 155 IATE 158
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 146 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLPQFDPEEMIQCLNRLIQIDQE 205
G ++FEG+KAYR DG I FRPE N R+ SA R +P+ E I+ L +LI +D++
Sbjct: 78 GQEIFEGLKAYRWADGSIVSFRPEANAARLQSSARRLAIPELPEEVFIESLRQLIAVDEK 137
Query: 206 WVPHTTA-ASLYIRPTLIGTD 225
WVP SLY+RP +I T+
Sbjct: 138 WVPPAGGEESLYLRPFVIATE 158
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 223 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQE 282
G ++FEG+KAYR DG I FRPE N R+ SA R +P+ E I+ L +LI +D++
Sbjct: 78 GQEIFEGLKAYRWADGSIVSFRPEANAARLQSSARRLAIPELPEEVFIESLRQLIAVDEK 137
Query: 283 WVPHTTA-ASLYIRPTLIGTD 302
WVP SLY+RP +I T+
Sbjct: 138 WVPPAGGEESLYLRPFVIATE 158
>pdb|3HT5|A Chain A, Crystal Structure Of Ilve A Branched Chain Amino Acid
Transaminase From Mycobacterium Tuberculosis
Length = 368
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/124 (41%), Positives = 72/124 (58%), Gaps = 2/124 (1%)
Query: 26 FGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGH 85
FG TDHM+ I++ E G W RV P + L P+A VLHY+ E+FEG+KAYR DG
Sbjct: 31 FGKYHTDHMVSIDYAEGRG-WHNARVIPYGPIELDPSAIVLHYAQEVFEGLKAYRWADGS 89
Query: 86 IRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTA-ASLYIRPTL 144
I FR + N R+ SA R +P+ I+ L +LI +D+ WVP +LY+RP +
Sbjct: 90 IVSFRADANAARLRSSARRLAIPELPDAVFIESLRQLIAVDKAWVPGAGGEEALYLRPFI 149
Query: 145 IGTD 148
T+
Sbjct: 150 FATE 153
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 148 DLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLPQFDPEEMIQCLNRLIQIDQEWV 207
++FEG+KAYR DG I FR + N R+ SA R +P+ I+ L +LI +D+ WV
Sbjct: 75 EVFEGLKAYRWADGSIVSFRADANAARLRSSARRLAIPELPDAVFIESLRQLIAVDKAWV 134
Query: 208 PHTTA-ASLYIRPTLIGTD 225
P +LY+RP + T+
Sbjct: 135 PGAGGEEALYLRPFIFATE 153
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 225 DLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWV 284
++FEG+KAYR DG I FR + N R+ SA R +P+ I+ L +LI +D+ WV
Sbjct: 75 EVFEGLKAYRWADGSIVSFRADANAARLRSSARRLAIPELPDAVFIESLRQLIAVDKAWV 134
Query: 285 PHTTA-ASLYIRPTLIGTD 302
P +LY+RP + T+
Sbjct: 135 PGAGGEEALYLRPFIFATE 153
>pdb|4DQN|A Chain A, Crystal Structure Of The Branched-Chain Aminotransferase
From Streptococcus Mutans
Length = 345
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 66/105 (62%), Gaps = 1/105 (0%)
Query: 44 GGWQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSAL 103
G W +++ L + ++ LHY E FEG+KAYR DG +++FRP MN +R+ R+A
Sbjct: 32 GKWDDGKLTEDATLHISESSPALHYGQEAFEGLKAYRTKDGSVQLFRPNMNAERLQRTAD 91
Query: 104 RAGLPQFDPEEMIQCLNRLIQIDQEWV-PHTTAASLYIRPTLIGT 147
R +PQ ++ I ++++ ++E+V P+ T A+LY+RP LIG
Sbjct: 92 RLLMPQVPTDKFIDAAKQVVRANEEYVPPYGTGATLYLRPLLIGV 136
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 63/97 (64%), Gaps = 5/97 (5%)
Query: 210 TTAASLYIR---PTL-IGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFD 265
T A+L+I P L G + FEG+KAYR DG +++FRP MN +R+ R+A R +PQ
Sbjct: 40 TEDATLHISESSPALHYGQEAFEGLKAYRTKDGSVQLFRPNMNAERLQRTADRLLMPQVP 99
Query: 266 PEEMIQCLNRLIQIDQEWV-PHTTAASLYIRPTLIGT 301
++ I ++++ ++E+V P+ T A+LY+RP LIG
Sbjct: 100 TDKFIDAAKQVVRANEEYVPPYGTGATLYLRPLLIGV 136
Score = 74.7 bits (182), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 63/97 (64%), Gaps = 5/97 (5%)
Query: 133 TTAASLYIR---PTL-IGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLPQFD 188
T A+L+I P L G + FEG+KAYR DG +++FRP MN +R+ ++A R +PQ
Sbjct: 40 TEDATLHISESSPALHYGQEAFEGLKAYRTKDGSVQLFRPNMNAERLQRTADRLLMPQVP 99
Query: 189 PEEMIQCLNRLIQIDQEWV-PHTTAASLYIRPTLIGT 224
++ I ++++ ++E+V P+ T A+LY+RP LIG
Sbjct: 100 TDKFIDAAKQVVRANEEYVPPYGTGATLYLRPLLIGV 136
>pdb|3UYY|A Chain A, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UYY|B Chain B, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZB|A Chain A, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZB|B Chain B, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZB|C Chain C, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZB|D Chain D, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZO|A Chain A, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZO|B Chain B, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
Length = 358
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 75/138 (54%), Gaps = 5/138 (3%)
Query: 12 PEQLQPKPEV--SQLKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLHPAAKVLHYS 69
PEQ + ++ S L F + TD L+ + + G W A ++ + L + LHY
Sbjct: 15 PEQAKKLADIDWSTLGFSYIRTD--LRYLAHWKDGEWDAGTLTEDNQIHLAEGSTALHYG 72
Query: 70 VELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEW 129
+ FEG+KAYR DG I +FRP+ N RM S R +P+ E+ I ++++ ++ +
Sbjct: 73 QQCFEGLKAYRCADGSINLFRPDQNAARMRMSCRRLLMPELSDEQFIDACLQVVRANEHF 132
Query: 130 V-PHTTAASLYIRPTLIG 146
+ P+ T SLY+RP +IG
Sbjct: 133 LPPYGTGGSLYLRPFVIG 150
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 146 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLPQFDPEEMIQCLNRLIQIDQE 205
G FEG+KAYR DG I +FRP+ N RM S R +P+ E+ I ++++ ++
Sbjct: 72 GQQCFEGLKAYRCADGSINLFRPDQNAARMRMSCRRLLMPELSDEQFIDACLQVVRANEH 131
Query: 206 WV-PHTTAASLYIRPTLIG 223
++ P+ T SLY+RP +IG
Sbjct: 132 FLPPYGTGGSLYLRPFVIG 150
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 223 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQE 282
G FEG+KAYR DG I +FRP+ N RM S R +P+ E+ I ++++ ++
Sbjct: 72 GQQCFEGLKAYRCADGSINLFRPDQNAARMRMSCRRLLMPELSDEQFIDACLQVVRANEH 131
Query: 283 WV-PHTTAASLYIRPTLIG 300
++ P+ T SLY+RP +IG
Sbjct: 132 FLPPYGTGGSLYLRPFVIG 150
>pdb|1I1K|A Chain A, Crystal Structure Of Eschelichia Coli Branched-chain Amino
Acid Aminotransferase.
pdb|1I1K|B Chain B, Crystal Structure Of Eschelichia Coli Branched-chain Amino
Acid Aminotransferase.
pdb|1I1K|C Chain C, Crystal Structure Of Eschelichia Coli Branched-chain Amino
Acid Aminotransferase.
pdb|1I1L|A Chain A, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1L|B Chain B, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1L|C Chain C, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1M|A Chain A, Crystal Structure Of Escherichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1M|B Chain B, Crystal Structure Of Escherichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1M|C Chain C, Crystal Structure Of Escherichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1IYD|A Chain A, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYD|B Chain B, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYD|C Chain C, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYE|A Chain A, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYE|B Chain B, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYE|C Chain C, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
Length = 309
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 15/118 (12%)
Query: 37 IEFNEQLGGWQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMD 96
I FN ++ W+ +V H + LHY +FEG++ Y G + +FR +M
Sbjct: 9 IWFNGEMVRWEDAKV--------HVMSHALHYGTSVFEGIRCYDSHKGPV-VFRHREHMQ 59
Query: 97 RMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTDLFEGMK 154
R++ SA P + Q ++ L++ ++ + S YIRP + D+ G+
Sbjct: 60 RLHDSAKIYRFP------VSQSIDELMEACRDVIRKNNLTSAYIRPLIFVGDVGMGVN 111
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 146 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLPQFDPEEMIQCLNRLIQIDQE 205
GT +FEG++ Y G + +FR +M R++ SA P + Q ++ L++ ++
Sbjct: 33 GTSVFEGIRCYDSHKGPV-VFRHREHMQRLHDSAKIYRFP------VSQSIDELMEACRD 85
Query: 206 WVPHTTAASLYIRPTLIGTDLFEGMK 231
+ S YIRP + D+ G+
Sbjct: 86 VIRKNNLTSAYIRPLIFVGDVGMGVN 111
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 223 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQE 282
GT +FEG++ Y G + +FR +M R++ SA P + Q ++ L++ ++
Sbjct: 33 GTSVFEGIRCYDSHKGPV-VFRHREHMQRLHDSAKIYRFP------VSQSIDELMEACRD 85
Query: 283 WVPHTTAASLYIRPTLIGTD 302
+ S YIRP + D
Sbjct: 86 VIRKNNLTSAYIRPLIFVGD 105
>pdb|1A3G|A Chain A, Branched-chain Amino Acid Aminotransferase From
Escherichia Coli
pdb|1A3G|B Chain B, Branched-chain Amino Acid Aminotransferase From
Escherichia Coli
pdb|1A3G|C Chain C, Branched-chain Amino Acid Aminotransferase From
Escherichia Coli
Length = 308
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 15/118 (12%)
Query: 37 IEFNEQLGGWQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMD 96
I FN ++ W+ +V H + LHY +FEG++ Y G + +FR +M
Sbjct: 8 IWFNGEMVRWEDAKV--------HVMSHALHYGTSVFEGIRCYDSHKGPV-VFRHREHMQ 58
Query: 97 RMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTDLFEGMK 154
R++ SA P + Q ++ L++ ++ + S YIRP + D+ G+
Sbjct: 59 RLHDSAKIYRFP------VSQSIDELMEACRDVIRKNNLTSAYIRPLIFVGDVGMGVN 110
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 146 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLPQFDPEEMIQCLNRLIQIDQE 205
GT +FEG++ Y G + +FR +M R++ SA P + Q ++ L++ ++
Sbjct: 32 GTSVFEGIRCYDSHKGPV-VFRHREHMQRLHDSAKIYRFP------VSQSIDELMEACRD 84
Query: 206 WVPHTTAASLYIRPTLIGTDLFEGMK 231
+ S YIRP + D+ G+
Sbjct: 85 VIRKNNLTSAYIRPLIFVGDVGMGVN 110
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 223 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQE 282
GT +FEG++ Y G + +FR +M R++ SA P + Q ++ L++ ++
Sbjct: 32 GTSVFEGIRCYDSHKGPV-VFRHREHMQRLHDSAKIYRFP------VSQSIDELMEACRD 84
Query: 283 WVPHTTAASLYIRPTLIGTD 302
+ S YIRP + D
Sbjct: 85 VIRKNNLTSAYIRPLIFVGD 104
>pdb|3U0G|A Chain A, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|B Chain B, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|C Chain C, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|D Chain D, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|E Chain E, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|F Chain F, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
Length = 328
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 11/106 (10%)
Query: 46 WQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSA--L 103
W ++ + +H LHY + +FEG++AY+ DG +FR + + R+ SA
Sbjct: 32 WMDGKLIEWRDAKIHVLTHTLHYGMGVFEGVRAYKTADGGTAIFRLKEHTKRLLNSAKIF 91
Query: 104 RAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTL-IGTD 148
+ +P FD +E ++ R + V S Y+RP + IG++
Sbjct: 92 QMDVP-FD-QETLEAAQRDV------VRENKLESCYLRPIIWIGSE 129
Score = 31.6 bits (70), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 11/83 (13%)
Query: 146 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSA--LRAGLPQFDPEEMIQCLNRLIQID 203
G +FEG++AY+ DG +FR + + R+ SA + +P FD +E ++ R +
Sbjct: 55 GMGVFEGVRAYKTADGGTAIFRLKEHTKRLLNSAKIFQMDVP-FD-QETLEAAQRDV--- 109
Query: 204 QEWVPHTTAASLYIRPTL-IGTD 225
V S Y+RP + IG++
Sbjct: 110 ---VRENKLESCYLRPIIWIGSE 129
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 11/83 (13%)
Query: 223 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSA--LRAGLPQFDPEEMIQCLNRLIQID 280
G +FEG++AY+ DG +FR + + R+ SA + +P FD +E ++ R +
Sbjct: 55 GMGVFEGVRAYKTADGGTAIFRLKEHTKRLLNSAKIFQMDVP-FD-QETLEAAQRDV--- 109
Query: 281 QEWVPHTTAASLYIRPTL-IGTD 302
V S Y+RP + IG++
Sbjct: 110 ---VRENKLESCYLRPIIWIGSE 129
>pdb|1WRV|A Chain A, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase
pdb|1WRV|B Chain B, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase
pdb|1WRV|C Chain C, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase
pdb|2EIY|A Chain A, Crystal Structure Of T.th.hb8 Branched-chain Amino Acid
Aminotransferase Complexed With 4-methylvaleric Acid
pdb|2EIY|B Chain B, Crystal Structure Of T.th.hb8 Branched-chain Amino Acid
Aminotransferase Complexed With 4-methylvaleric Acid
pdb|2EIY|C Chain C, Crystal Structure Of T.th.hb8 Branched-chain Amino Acid
Aminotransferase Complexed With 4-methylvaleric Acid
pdb|2EJ0|A Chain A, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ0|B Chain B, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ0|C Chain C, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ0|D Chain D, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ0|E Chain E, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ0|F Chain F, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ2|A Chain A, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ2|B Chain B, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ2|C Chain C, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ2|D Chain D, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ2|E Chain E, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ2|F Chain F, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ3|A Chain A, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With Gabapentin
pdb|2EJ3|B Chain B, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With Gabapentin
pdb|2EJ3|C Chain C, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With Gabapentin
Length = 308
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 12/107 (11%)
Query: 116 IQCLNRLIQIDQEWVPHTTAASLYIRPTL-IGTDLFEGMKAYRGVDGHIRMFRPEMNMDR 174
+Q LI ++ +VP A + + L GT +FEG++AY G +FR + ++ R
Sbjct: 1 MQIKAGLIWMNGAFVPQEEAKTSVLSHALHYGTSVFEGIRAYETAKGPA-IFRLKEHVKR 59
Query: 175 MNQSA--LRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRP 219
SA LR +P F PEE+ + + +++ S YIRP
Sbjct: 60 FYNSAKVLRMEIP-FAPEELEEAIKEVVR-------RNGYRSCYIRP 98
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 12/107 (11%)
Query: 193 IQCLNRLIQIDQEWVPHTTAASLYIRPTL-IGTDLFEGMKAYRGVDGHIRMFRPEMNMDR 251
+Q LI ++ +VP A + + L GT +FEG++AY G +FR + ++ R
Sbjct: 1 MQIKAGLIWMNGAFVPQEEAKTSVLSHALHYGTSVFEGIRAYETAKGPA-IFRLKEHVKR 59
Query: 252 MNRSA--LRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRP 296
SA LR +P F PEE+ + + +++ S YIRP
Sbjct: 60 FYNSAKVLRMEIP-FAPEELEEAIKEVVR-------RNGYRSCYIRP 98
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 11/79 (13%)
Query: 66 LHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSA--LRAGLPQFDPEEMIQCLNRLI 123
LHY +FEG++AY G +FR + ++ R SA LR +P F PEE+ + + ++
Sbjct: 29 LHYGTSVFEGIRAYETAKGPA-IFRLKEHVKRFYNSAKVLRMEIP-FAPEELEEAIKEVV 86
Query: 124 QIDQEWVPHTTAASLYIRP 142
+ S YIRP
Sbjct: 87 R-------RNGYRSCYIRP 98
>pdb|2VR0|A Chain A, Crystal Structure Of Cytochrome C Nitrite Reductase Nrfha
Complex Bound To The Hqno Inhibitor
pdb|2VR0|B Chain B, Crystal Structure Of Cytochrome C Nitrite Reductase Nrfha
Complex Bound To The Hqno Inhibitor
pdb|2VR0|D Chain D, Crystal Structure Of Cytochrome C Nitrite Reductase Nrfha
Complex Bound To The Hqno Inhibitor
pdb|2VR0|E Chain E, Crystal Structure Of Cytochrome C Nitrite Reductase Nrfha
Complex Bound To The Hqno Inhibitor
Length = 524
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 42/108 (38%), Gaps = 18/108 (16%)
Query: 28 TVFTDHMLQIEFNEQLGGWQAPRVSPL--KYLTLHPAAKVLHYSVELFEGMKAYRGVDGH 85
TV T++ + FN+ V+PL Y P K L M YR GH
Sbjct: 71 TVMTEYKGSVPFNKN------DNVNPLPEGYRHAQPYLKNLWLGYPF---MYEYREARGH 121
Query: 86 IRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHT 133
+ +++DR+NR A + GLP C N EWV +
Sbjct: 122 TYAIQDFLHIDRINRYAEKGGLP-------ATCWNCKTPKMMEWVKES 162
Score = 30.8 bits (68), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 10/75 (13%)
Query: 213 ASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQC 272
A Y++ +G + M YR GH + +++DR+NR A + GLP C
Sbjct: 98 AQPYLKNLWLG---YPFMYEYREARGHTYAIQDFLHIDRINRYAEKGGLP-------ATC 147
Query: 273 LNRLIQIDQEWVPHT 287
N EWV +
Sbjct: 148 WNCKTPKMMEWVKES 162
>pdb|2J7A|A Chain A, Crystal Structure Of Cytochrome C Nitrite Reductase Nrfha
Complex From Desulfovibrio Vulgaris
pdb|2J7A|B Chain B, Crystal Structure Of Cytochrome C Nitrite Reductase Nrfha
Complex From Desulfovibrio Vulgaris
pdb|2J7A|D Chain D, Crystal Structure Of Cytochrome C Nitrite Reductase Nrfha
Complex From Desulfovibrio Vulgaris
pdb|2J7A|E Chain E, Crystal Structure Of Cytochrome C Nitrite Reductase Nrfha
Complex From Desulfovibrio Vulgaris
pdb|2J7A|G Chain G, Crystal Structure Of Cytochrome C Nitrite Reductase Nrfha
Complex From Desulfovibrio Vulgaris
pdb|2J7A|H Chain H, Crystal Structure Of Cytochrome C Nitrite Reductase Nrfha
Complex From Desulfovibrio Vulgaris
pdb|2J7A|J Chain J, Crystal Structure Of Cytochrome C Nitrite Reductase Nrfha
Complex From Desulfovibrio Vulgaris
pdb|2J7A|K Chain K, Crystal Structure Of Cytochrome C Nitrite Reductase Nrfha
Complex From Desulfovibrio Vulgaris
pdb|2J7A|M Chain M, Crystal Structure Of Cytochrome C Nitrite Reductase Nrfha
Complex From Desulfovibrio Vulgaris
pdb|2J7A|N Chain N, Crystal Structure Of Cytochrome C Nitrite Reductase Nrfha
Complex From Desulfovibrio Vulgaris
pdb|2J7A|P Chain P, Crystal Structure Of Cytochrome C Nitrite Reductase Nrfha
Complex From Desulfovibrio Vulgaris
pdb|2J7A|Q Chain Q, Crystal Structure Of Cytochrome C Nitrite Reductase Nrfha
Complex From Desulfovibrio Vulgaris
Length = 500
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 42/108 (38%), Gaps = 18/108 (16%)
Query: 28 TVFTDHMLQIEFNEQLGGWQAPRVSPL--KYLTLHPAAKVLHYSVELFEGMKAYRGVDGH 85
TV T++ + FN+ V+PL Y P K L M YR GH
Sbjct: 47 TVMTEYKGSVPFNKN------DNVNPLPEGYRHAQPYLKNLWLGYPF---MYEYREARGH 97
Query: 86 IRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHT 133
+ +++DR+NR A + GLP C N EWV +
Sbjct: 98 TYAIQDFLHIDRINRYAEKGGLP-------ATCWNCKTPKMMEWVKES 138
Score = 30.8 bits (68), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 10/75 (13%)
Query: 213 ASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQC 272
A Y++ +G + M YR GH + +++DR+NR A + GLP C
Sbjct: 74 AQPYLKNLWLG---YPFMYEYREARGHTYAIQDFLHIDRINRYAEKGGLP-------ATC 123
Query: 273 LNRLIQIDQEWVPHT 287
N EWV +
Sbjct: 124 WNCKTPKMMEWVKES 138
>pdb|4FL3|A Chain A, Structural And Biophysical Characterization Of The Syk
Activation Switch
Length = 635
Score = 30.8 bits (68), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 36/100 (36%), Gaps = 14/100 (14%)
Query: 46 WQAPRVSPLKYLTLHPAAKVLHYSVELFE----GMKAYRGVDGHIRMFRPEMNMDRMNRS 101
W AP + Y + V + V ++E G K YRG+ G + M
Sbjct: 538 WYAPEC--INYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGS--------EVTAMLEK 587
Query: 102 ALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIR 141
R G P P EM +N D E P A L +R
Sbjct: 588 GERMGCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLR 627
>pdb|4FL2|A Chain A, Structural And Biophysical Characterization Of The Syk
Activation Switch
Length = 636
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 36/100 (36%), Gaps = 14/100 (14%)
Query: 46 WQAPRVSPLKYLTLHPAAKVLHYSVELFE----GMKAYRGVDGHIRMFRPEMNMDRMNRS 101
W AP + Y + V + V ++E G K YRG+ G + M
Sbjct: 539 WYAPEC--INYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGS--------EVTAMLEK 588
Query: 102 ALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIR 141
R G P P EM +N D E P A L +R
Sbjct: 589 GERMGCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLR 628
>pdb|3SRV|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase (Syk) In
Complex With A Diaminopyrimidine Carboxamide Inhibitor
Length = 277
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 36/100 (36%), Gaps = 14/100 (14%)
Query: 46 WQAPRVSPLKYLTLHPAAKVLHYSVELFE----GMKAYRGVDGHIRMFRPEMNMDRMNRS 101
W AP + Y + V + V ++E G K YRG+ G + M
Sbjct: 180 WYAPEC--INYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGS--------EVTAMLEK 229
Query: 102 ALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIR 141
R G P P EM +N D E P A L +R
Sbjct: 230 GERMGCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLR 269
>pdb|3TUB|A Chain A, Crystal Structure Of Syk Kinase Domain With 1-(5-(6,7-
Dimethoxyquinolin-4-Yloxy)pyridin-2-Yl)-3-((1r,2s)-2-
Phenylcyclopropyl)urea
Length = 293
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 36/100 (36%), Gaps = 14/100 (14%)
Query: 46 WQAPRVSPLKYLTLHPAAKVLHYSVELFE----GMKAYRGVDGHIRMFRPEMNMDRMNRS 101
W AP + Y + V + V ++E G K YRG+ G + M
Sbjct: 196 WYAPEC--INYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGS--------EVTAMLEK 245
Query: 102 ALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIR 141
R G P P EM +N D E P A L +R
Sbjct: 246 GERMGCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLR 285
>pdb|3VF8|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Syk Catalytic
Domain With Pyrazolylbenzimidazole Inhibitor 416
pdb|3VF9|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Syk Catalytic
Domain With Thienopyrazolylindole Inhibitor 027
pdb|3TUC|A Chain A, Crystal Structure Of Syk Kinase Domain With
1-Benzyl-N-(5-(6,7-
Dimethoxyquinolin-4-Yloxy)pyridin-2-Yl)-2-Oxo-1,
2-Dihydropyridine-3- Carboxamide
pdb|3TUD|A Chain A, Crystal Structure Of Syk Kinase Domain With
N-(4-Methyl-3-(8-Methyl-7-
Oxo-2-(Phenylamino)-7,8-Dihydropyrido[2,
3-D]pyrimidin-6-Yl)phenyl)-3- (Trifluoromethyl)benzamide
Length = 299
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 36/100 (36%), Gaps = 14/100 (14%)
Query: 46 WQAPRVSPLKYLTLHPAAKVLHYSVELFE----GMKAYRGVDGHIRMFRPEMNMDRMNRS 101
W AP + Y + V + V ++E G K YRG+ G + M
Sbjct: 196 WYAPEC--INYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGS--------EVTAMLEK 245
Query: 102 ALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIR 141
R G P P EM +N D E P A L +R
Sbjct: 246 GERMGCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLR 285
>pdb|3SRV|B Chain B, Crystal Structure Of Spleen Tyrosine Kinase (Syk) In
Complex With A Diaminopyrimidine Carboxamide Inhibitor
Length = 277
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 36/100 (36%), Gaps = 14/100 (14%)
Query: 46 WQAPRVSPLKYLTLHPAAKVLHYSVELFE----GMKAYRGVDGHIRMFRPEMNMDRMNRS 101
W AP + Y + V + V ++E G K YRG+ G + M
Sbjct: 180 WYAPEC--INYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGS--------EVTAMLEK 229
Query: 102 ALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIR 141
R G P P EM +N D E P A L +R
Sbjct: 230 GERMGCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLR 269
>pdb|4F4P|A Chain A, Syk In Complex With Ligand Lasw836
Length = 273
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 36/100 (36%), Gaps = 14/100 (14%)
Query: 46 WQAPRVSPLKYLTLHPAAKVLHYSVELFE----GMKAYRGVDGHIRMFRPEMNMDRMNRS 101
W AP + Y + V + V ++E G K YRG+ G + M
Sbjct: 174 WYAPEC--INYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGS--------EVTAMLEK 223
Query: 102 ALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIR 141
R G P P EM +N D E P A L +R
Sbjct: 224 GERMGCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLR 263
>pdb|3EMG|A Chain A, Discovery And Sar Of Novel 4-Thiazolyl-2-
Phenylaminopyrimidines As Potent Inhibitors Of Spleen
Tyrosine Kinase (Syk)
Length = 291
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 36/100 (36%), Gaps = 14/100 (14%)
Query: 46 WQAPRVSPLKYLTLHPAAKVLHYSVELFE----GMKAYRGVDGHIRMFRPEMNMDRMNRS 101
W AP + Y + V + V ++E G K YRG+ G + M
Sbjct: 194 WYAPEC--INYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGS--------EVTAMLEK 243
Query: 102 ALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIR 141
R G P P EM +N D E P A L +R
Sbjct: 244 GERMGCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLR 283
>pdb|1XBA|A Chain A, Crystal Structure Of Apo Syk Tyrosine Kinase Domain
pdb|1XBB|A Chain A, Crystal Structure Of The Syk Tyrosine Kinase Domain With
Gleevec
pdb|1XBC|A Chain A, Crystal Structure Of The Syk Tyrosine Kinase Domain With
Staurosporin
pdb|3FQE|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Complexed With
Ym193306
pdb|3FQH|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Complexed With
A 2-Substituted 7-Azaindole
pdb|3FQH|B Chain B, Crystal Structure Of Spleen Tyrosine Kinase Complexed With
A 2-Substituted 7-Azaindole
pdb|3FQS|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Complexed With
R406
pdb|4FL1|A Chain A, Structural And Biophysical Characterization Of The Syk
Activation Switch
pdb|4FYN|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Complexed With
3-(8-{4-
[ethyl-(2-hydroxy-ethyl)-amino]-phenylamino}-imidazo[1,
2-a]pyrazin-5- Yl)-phenol
pdb|4FYO|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Complexed With
N-{(s)-1-
[7-(3,4-dimethoxy-phenylamino)-thiazolo[5,
4-d]pyrimidin-5-yl]- Pyrrolidin-3-yl}-terephthalamic
Acid
pdb|4FZ6|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Complexed With
[6-((s)-2-
Methyl-pyrrolidin-1-yl)-pyridin-2-yl]-(6-phenyl-
imidazo[1,2- B]pyridazin-8-yl)-amine
Length = 291
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 36/100 (36%), Gaps = 14/100 (14%)
Query: 46 WQAPRVSPLKYLTLHPAAKVLHYSVELFE----GMKAYRGVDGHIRMFRPEMNMDRMNRS 101
W AP + Y + V + V ++E G K YRG+ G + M
Sbjct: 186 WYAPEC--INYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGS--------EVTAMLEK 235
Query: 102 ALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIR 141
R G P P EM +N D E P A L +R
Sbjct: 236 GERMGCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLR 275
>pdb|4DFL|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Complexed With
A Sulfonamidopyrazine Piperidine Inhibitor
pdb|4DFN|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Complexed With
An Adamantylpyrazine Inhibitor
Length = 274
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 36/100 (36%), Gaps = 14/100 (14%)
Query: 46 WQAPRVSPLKYLTLHPAAKVLHYSVELFE----GMKAYRGVDGHIRMFRPEMNMDRMNRS 101
W AP + Y + V + V ++E G K YRG+ G + M
Sbjct: 176 WYAPEC--INYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGS--------EVTAMLEK 225
Query: 102 ALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIR 141
R G P P EM +N D E P A L +R
Sbjct: 226 GERMGCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLR 265
>pdb|2O9I|A Chain A, Crystal Structure Of The Human Pregnane X Receptor Lbd In
Complex With An Src-1 Coactivator Peptide And T0901317
pdb|2O9I|B Chain B, Crystal Structure Of The Human Pregnane X Receptor Lbd In
Complex With An Src-1 Coactivator Peptide And T0901317
Length = 293
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 18/82 (21%)
Query: 20 EVSQLKFGTVFTDHM-------LQIEFNEQLGGWQAPRVSP-------LKYLTLHPAAKV 65
E+SQL+F TVF L + GG+Q + P LK L LH V
Sbjct: 141 ELSQLRFNTVFNAETGTWECGRLSYCLEDTAGGFQQLLLEPMLKFHYMLKKLQLHEEEYV 200
Query: 66 LHYSVELFE----GMKAYRGVD 83
L ++ LF G+ +R VD
Sbjct: 201 LMQAISLFSPDRPGVLQHRVVD 222
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,182,283
Number of Sequences: 62578
Number of extensions: 373036
Number of successful extensions: 1039
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 958
Number of HSP's gapped (non-prelim): 89
length of query: 302
length of database: 14,973,337
effective HSP length: 98
effective length of query: 204
effective length of database: 8,840,693
effective search space: 1803501372
effective search space used: 1803501372
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 51 (24.3 bits)