Query psy16306
Match_columns 302
No_of_seqs 292 out of 2487
Neff 7.8
Searched_HMMs 46136
Date Fri Aug 16 17:58:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16306.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16306hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02782 Branched-chain amino 100.0 6.3E-34 1.4E-38 271.0 14.1 146 18-166 69-214 (403)
2 PLN02883 Branched-chain amino 100.0 6.8E-33 1.5E-37 262.2 13.7 137 19-156 52-188 (384)
3 PLN02259 branched-chain-amino- 100.0 6.7E-33 1.4E-37 262.8 13.6 147 17-166 54-200 (388)
4 KOG0975|consensus 100.0 6.9E-31 1.5E-35 240.2 11.0 153 20-178 46-198 (379)
5 PLN03117 Branched-chain-amino- 100.0 9.4E-30 2E-34 239.7 13.5 135 20-155 21-155 (355)
6 PRK13357 branched-chain amino 100.0 5.9E-28 1.3E-32 227.8 14.4 157 7-167 3-162 (356)
7 PRK12479 branched-chain amino 99.9 2.3E-23 5E-28 192.4 6.2 111 44-166 5-116 (299)
8 PRK12400 D-amino acid aminotra 99.9 6.9E-23 1.5E-27 188.5 4.2 112 44-166 6-120 (290)
9 PRK08320 branched-chain amino 99.9 1.3E-22 2.9E-27 186.4 6.0 111 44-166 4-115 (288)
10 TIGR01121 D_amino_aminoT D-ami 99.9 5.3E-23 1.1E-27 188.0 3.3 91 45-147 2-93 (276)
11 PRK06680 D-amino acid aminotra 99.9 7.5E-23 1.6E-27 187.9 3.0 112 44-167 4-117 (286)
12 TIGR01123 ilvE_II branched-cha 99.9 2.3E-21 5E-26 180.2 10.4 111 46-156 1-112 (313)
13 cd01558 D-AAT_like D-Alanine a 99.8 2.2E-22 4.7E-27 183.2 2.4 109 46-166 1-110 (270)
14 TIGR01122 ilvE_I branched-chai 99.8 9.5E-21 2.1E-25 174.9 10.0 113 46-166 1-114 (298)
15 PRK07544 branched-chain amino 99.8 2.4E-20 5.1E-25 171.8 9.1 101 44-156 10-111 (292)
16 PRK06606 branched-chain amino 99.8 1E-19 2.2E-24 168.7 10.1 105 44-156 8-113 (306)
17 PLN02845 Branched-chain-amino- 99.8 2.1E-19 4.6E-24 168.4 9.4 110 45-166 43-153 (336)
18 PRK13356 aminotransferase; Pro 99.8 3.1E-19 6.8E-24 163.9 10.0 95 44-149 8-103 (286)
19 PRK07650 4-amino-4-deoxychoris 99.8 3.9E-19 8.4E-24 163.0 9.3 110 45-166 2-112 (283)
20 COG0115 IlvE Branched-chain am 99.8 1.3E-18 2.8E-23 159.7 9.8 101 44-155 3-104 (284)
21 cd01557 BCAT_beta_family BCAT_ 99.7 4.3E-18 9.4E-23 155.8 10.0 99 58-156 1-99 (279)
22 PRK07849 4-amino-4-deoxychoris 99.7 3E-17 6.4E-22 151.2 8.4 95 44-148 8-107 (292)
23 TIGR03461 pabC_Proteo aminodeo 99.7 2.1E-16 4.6E-21 143.2 9.6 92 46-155 1-92 (261)
24 PRK09266 hypothetical protein; 99.7 2.8E-16 6E-21 142.9 9.3 91 44-152 4-94 (266)
25 PRK06092 4-amino-4-deoxychoris 99.6 4.8E-16 1E-20 141.4 9.5 104 45-166 2-105 (268)
26 PLN02782 Branched-chain amino 99.6 5.7E-17 1.2E-21 154.9 0.6 171 123-295 95-294 (403)
27 cd01559 ADCL_like ADCL_like: 4 99.6 3.4E-15 7.4E-20 134.4 9.1 91 63-165 1-91 (249)
28 PLN02259 branched-chain-amino- 99.6 4E-16 8.6E-21 148.4 0.4 111 122-232 80-191 (388)
29 cd00449 PLPDE_IV PyridoxaL 5'- 99.5 1.4E-14 3E-19 130.6 8.5 92 63-166 1-93 (256)
30 PLN02883 Branched-chain amino 99.5 2.1E-15 4.6E-20 143.2 2.2 172 124-295 78-276 (384)
31 PLN03117 Branched-chain-amino- 99.5 3.6E-15 7.7E-20 140.8 0.3 172 122-295 44-243 (355)
32 PRK13357 branched-chain amino 99.4 4.4E-14 9.6E-19 133.6 2.2 170 124-295 42-241 (356)
33 PRK07544 branched-chain amino 99.4 1.9E-14 4E-19 132.6 -0.7 161 122-295 10-200 (292)
34 KOG0975|consensus 99.4 2.2E-13 4.8E-18 125.5 5.2 153 142-294 89-266 (379)
35 TIGR01122 ilvE_I branched-chai 99.4 7.1E-14 1.5E-18 129.1 0.3 164 124-295 1-194 (298)
36 PLN02845 Branched-chain-amino- 99.3 2.3E-13 5E-18 127.7 0.2 117 89-224 16-134 (336)
37 PRK06606 branched-chain amino 99.3 1.7E-13 3.6E-18 127.1 -1.0 165 122-295 8-202 (306)
38 COG0115 IlvE Branched-chain am 99.3 1.2E-12 2.7E-17 120.1 2.3 162 122-296 3-193 (284)
39 PRK07650 4-amino-4-deoxychoris 99.3 1.4E-12 3E-17 119.7 1.8 93 122-226 1-95 (283)
40 cd01557 BCAT_beta_family BCAT_ 99.2 1.3E-12 2.9E-17 119.6 0.8 158 136-295 2-185 (279)
41 TIGR01123 ilvE_II branched-cha 99.2 1.7E-11 3.6E-16 114.1 7.3 101 201-301 1-103 (313)
42 PRK13356 aminotransferase; Pro 99.2 8E-12 1.7E-16 114.8 4.8 94 197-301 6-101 (286)
43 PRK12479 branched-chain amino 99.2 1.7E-11 3.6E-16 113.4 3.8 91 198-300 4-96 (299)
44 TIGR01121 D_amino_aminoT D-ami 99.1 6E-11 1.3E-15 108.5 4.9 88 200-299 2-91 (276)
45 PRK06680 D-amino acid aminotra 99.1 6.1E-11 1.3E-15 109.0 4.9 89 199-299 4-94 (286)
46 PRK09266 hypothetical protein; 99.1 6.6E-12 1.4E-16 114.2 -1.8 155 122-295 4-176 (266)
47 PRK08320 branched-chain amino 99.1 9.9E-11 2.1E-15 107.6 4.8 90 199-300 4-95 (288)
48 PRK12400 D-amino acid aminotra 99.1 9.9E-11 2.1E-15 107.8 4.9 91 199-300 6-100 (290)
49 cd01559 ADCL_like ADCL_like: 4 99.0 5.1E-11 1.1E-15 107.3 1.6 144 140-295 1-166 (249)
50 TIGR03461 pabC_Proteo aminodeo 99.0 5.6E-11 1.2E-15 107.7 1.4 72 124-203 1-72 (261)
51 cd00449 PLPDE_IV PyridoxaL 5'- 99.0 5.6E-11 1.2E-15 107.1 0.1 143 140-295 1-170 (256)
52 PRK06092 4-amino-4-deoxychoris 99.0 8.4E-11 1.8E-15 107.0 0.9 156 123-295 2-182 (268)
53 cd01558 D-AAT_like D-Alanine a 99.0 7.3E-10 1.6E-14 100.9 5.5 76 201-281 1-78 (270)
54 PRK07849 4-amino-4-deoxychoris 98.9 1E-09 2.2E-14 101.2 4.5 91 199-300 8-105 (292)
55 PRK07546 hypothetical protein; 98.4 7.6E-07 1.6E-11 78.1 6.1 65 70-148 4-69 (209)
56 PRK07101 hypothetical protein; 97.9 1.1E-05 2.3E-10 69.7 4.3 47 71-122 4-52 (187)
57 PF01063 Aminotran_4: Aminotra 97.9 2.1E-05 4.5E-10 69.6 5.3 59 89-154 1-60 (231)
58 PRK07546 hypothetical protein; 97.7 3.4E-05 7.3E-10 67.7 3.7 49 148-202 5-54 (209)
59 PF01063 Aminotran_4: Aminotra 97.3 0.00023 5.1E-09 62.8 3.6 56 166-228 1-57 (231)
60 PRK07101 hypothetical protein; 97.2 0.00021 4.5E-09 61.7 2.1 47 148-199 4-52 (187)
61 KOG3442|consensus 41.3 49 0.0011 26.5 4.1 42 97-142 57-99 (132)
62 PF03656 Pam16: Pam16; InterP 36.6 39 0.00085 27.2 3.1 42 97-142 56-98 (127)
63 COG5475 Uncharacterized small 27.2 70 0.0015 21.9 2.5 28 28-55 24-55 (60)
64 KOG4513|consensus 21.3 2.4E+02 0.0053 27.2 5.8 88 84-185 199-289 (531)
No 1
>PLN02782 Branched-chain amino acid aminotransferase
Probab=100.00 E-value=6.3e-34 Score=270.99 Aligned_cols=146 Identities=34% Similarity=0.581 Sum_probs=132.5
Q ss_pred CCCcCCCCcccccCCceEEEEEeCCCcceeCCeeccCCCcccCccchhhhcCCeeeeeeeeeecCCCceeecCcchhHHH
Q psy16306 18 KPEVSQLKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDR 97 (302)
Q Consensus 18 ~~~~~~~~f~~~~~~~m~~~~~~~~~~~w~~g~~~~~~~~~i~~~~~~~~yG~~vfEg~r~y~~~~g~~~~Fr~~~H~~R 97 (302)
..+|++|+||+++||||+.|+|+.+ ..|.||+++|.++++|++.|+|||||||||||||+|++.+|++++||+++|++|
T Consensus 69 ~~~~~~l~fg~~~td~m~~~~~~~~-~~w~ng~ivp~~~~~i~~~d~gl~YGdgvFEg~kayr~~~G~i~lFr~d~H~~R 147 (403)
T PLN02782 69 DIDWDNLGFGLVPTDYMYIMKCNRD-GEFSKGELQRFGNIELSPSAGVLNYGQGLFEGLKAYRKEDGNILLFRPEENAIR 147 (403)
T ss_pred cCCccccCCCccccCceEEEEECCC-CcEeCCEEEECCCCEeChhhhHHhhhhhhhheEEEEEcCCCcEeeeChHHHHHH
Confidence 4557999999999999999999775 689999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHhhccccccCCCCceeeecccccccccccccccccCCCCceEEe
Q psy16306 98 MNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMF 166 (302)
Q Consensus 98 l~~S~~~l~~~~~~~~~l~~~~~~lv~~Ng~~vp~~~~~s~yirp~~~g~~~~~g~~~~~~~~~~i~~f 166 (302)
|++||++|+||.++.++|.+++.++|..|+.|||.....++||||+++|++...|+.+.. +.++.++
T Consensus 148 L~~SA~rL~lp~~~~e~l~~~i~~lv~~n~~~vP~~~~~~lyiRp~v~g~~~~lG~~~~~--~~~~~i~ 214 (403)
T PLN02782 148 MRNGAERMCMPAPTVEQFVEAVKETVLANKRWVPPPGKGSLYIRPLLMGSGAVLGLAPAP--EYTFLIY 214 (403)
T ss_pred HHHHHHHhCcCCCCHHHHHHHHHHHHHhccccCCCCCCccEEEEEEEEecCCCcCcCCCC--CcEEEEE
Confidence 999999999996699999999999999999999987777999999999988777877653 3444444
No 2
>PLN02883 Branched-chain amino acid aminotransferase
Probab=100.00 E-value=6.8e-33 Score=262.22 Aligned_cols=137 Identities=35% Similarity=0.570 Sum_probs=128.8
Q ss_pred CCcCCCCcccccCCceEEEEEeCCCcceeCCeeccCCCcccCccchhhhcCCeeeeeeeeeecCCCceeecCcchhHHHH
Q psy16306 19 PEVSQLKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRM 98 (302)
Q Consensus 19 ~~~~~~~f~~~~~~~m~~~~~~~~~~~w~~g~~~~~~~~~i~~~~~~~~yG~~vfEg~r~y~~~~g~~~~Fr~~~H~~Rl 98 (302)
.+|++|+||++|||||++++|.++ ..|.+++++|+.+++|||++++||||||||||||+|++.+|++.+||+++|++||
T Consensus 52 ~~~~~l~fg~~~td~m~~~~~~~~-~~w~~~~i~p~~~l~l~p~a~~l~YGdgvFEg~kayr~~dG~i~lfr~~~h~~RL 130 (384)
T PLN02883 52 VDWDKLGFSLVRTDFMFATKSCRD-GNFEQGYLSRYGNIELNPAAGILNYGQGLIEGMKAYRGEDGRILLFRPELNAMRM 130 (384)
T ss_pred CCchhcCcCCeecCceEEEEEcCC-CcccCCeEeeCCCcccCccccHhhcceeeeeeEEEEECCCCCEeeeChhHHHHHH
Confidence 456999999999999999999876 7999999999999999999999999999999999999989999999999999999
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHhhccccccCCCCceeeecccccccccccccccc
Q psy16306 99 NRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAY 156 (302)
Q Consensus 99 ~~S~~~l~~~~~~~~~l~~~~~~lv~~Ng~~vp~~~~~s~yirp~~~g~~~~~g~~~~ 156 (302)
++||++|+||.++.++|.++++++|..|+.|||+....++||||++++++...|+++.
T Consensus 131 ~~SA~rL~lp~~~~e~~~~~i~~lv~~n~~wvp~~~~~~lYIRp~v~~~~~~lG~~~~ 188 (384)
T PLN02883 131 KIGAERMCMHSPSVHQFIEGVKQTVLANRRWVPPPGKGSLYLRPLLFGSGASLGVAAA 188 (384)
T ss_pred HHHHHHhCCCCcCHHHHHHHHHHHHHhccccCCCCCCceEEEEEEEEecCCccCCCCC
Confidence 9999999999679999999999999999999998777799999999999888888754
No 3
>PLN02259 branched-chain-amino-acid aminotransferase 2
Probab=100.00 E-value=6.7e-33 Score=262.79 Aligned_cols=147 Identities=28% Similarity=0.531 Sum_probs=132.5
Q ss_pred CCCCcCCCCcccccCCceEEEEEeCCCcceeCCeeccCCCcccCccchhhhcCCeeeeeeeeeecCCCceeecCcchhHH
Q psy16306 17 PKPEVSQLKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMD 96 (302)
Q Consensus 17 ~~~~~~~~~f~~~~~~~m~~~~~~~~~~~w~~g~~~~~~~~~i~~~~~~~~yG~~vfEg~r~y~~~~g~~~~Fr~~~H~~ 96 (302)
...+|++|+||+++||||+.++|+.+ ..|.||+++|.++++|++.|+|||||||||||||+|+..+|++.+||+++|++
T Consensus 54 ~~~~~~~l~f~~~~td~m~~~~~~~~-~~w~~g~ivp~~~~~i~~~drgl~YGdgvFEglkayr~~~G~i~lfr~~~h~~ 132 (388)
T PLN02259 54 ADLDWDNLGFGLNPADYMYVMKCSKD-GEFTQGELSPYGNIQLSPSAGVLNYGQAIYEGTKAYRKENGKLLLFRPDHNAI 132 (388)
T ss_pred ccCCccccCCCCcccCceEEEEECCC-CeEECCEEeEchhCeeCchhhHHHhhhhhhhcEEEEECCCCeEeecCcHHHHH
Confidence 34557999999999999999999876 79999999999999999999999999999999999998899888999999999
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHhhccccccCCCCceeeecccccccccccccccccCCCCceEEe
Q psy16306 97 RMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMF 166 (302)
Q Consensus 97 Rl~~S~~~l~~~~~~~~~l~~~~~~lv~~Ng~~vp~~~~~s~yirp~~~g~~~~~g~~~~~~~~~~i~~f 166 (302)
||++||++|+||.++.++|.+++.++|..|+.|||.....++|+||+++|++...|+.+.. ..++.++
T Consensus 133 RL~~SA~rL~lp~~~~e~~~~~i~~lv~~n~~~vp~~~~~~lyiRp~v~g~~~~lG~~p~~--~~~~~i~ 200 (388)
T PLN02259 133 RMKLGAERMLMPSPSVDQFVNAVKQTALANKRWVPPAGKGTLYIRPLLMGSGPILGLGPAP--EYTFIVY 200 (388)
T ss_pred HHHHhHHHhCCCCcCHHHHHHHHHHHHHhccccCCCCCCceEEEEEEEEecCCccCcCCCC--CcEEEEE
Confidence 9999999999996699999999999999999999987777999999999988777877542 3444444
No 4
>KOG0975|consensus
Probab=99.97 E-value=6.9e-31 Score=240.22 Aligned_cols=153 Identities=51% Similarity=0.831 Sum_probs=137.8
Q ss_pred CcCCCCcccccCCceEEEEEeCCCcceeCCeeccCCCcccCccchhhhcCCeeeeeeeeeecCCCceeecCcchhHHHHH
Q psy16306 20 EVSQLKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMN 99 (302)
Q Consensus 20 ~~~~~~f~~~~~~~m~~~~~~~~~~~w~~g~~~~~~~~~i~~~~~~~~yG~~vfEg~r~y~~~~g~~~~Fr~~~H~~Rl~ 99 (302)
+|++|+||.++||||+++.|+.+ .|..|++.|++++++||.+..||||+++|||+|+||+.||++++||++.|++|++
T Consensus 46 d~~~L~fg~~~td~m~~~k~~~~--gw~~~~I~p~gni~~~Paa~vlhy~~~lfEG~KAyRt~d~~i~LFrPd~N~~Rm~ 123 (379)
T KOG0975|consen 46 DWDELGFGLVFTDHMLTIKWSED--GWSQGEISPFGNLSLHPAAKVLHYGQGLFEGLKAYRTEDGKIRLFRPDQNMDRML 123 (379)
T ss_pred CHHHhccCCcccceeEEEecccc--CcCCCCccCcCCEeeChhhhceecchhhccccccccCCCCeEEEecchhhHHHHH
Confidence 34789999999999999999964 5999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHHhhccccccCCCCceeeecccccccccccccccccCCCCceEEecccchHHHHHHH
Q psy16306 100 RSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQS 178 (302)
Q Consensus 100 ~S~~~l~~~~~~~~~l~~~~~~lv~~Ng~~vp~~~~~s~yirp~~~g~~~~~g~~~~~~~~~~i~~f~~~~h~~Rl~~s 178 (302)
+||.+++||+++.+++.++++++++.|..|||...+.++||||+++|++..+|+..... .+ +|....|..+...+
T Consensus 124 ~sA~r~~lP~p~~~e~ie~i~~lv~~~~~wVP~~~~~SLyirp~l~Gt~~~Lgv~~~~e--~~--l~vi~spvg~yf~~ 198 (379)
T KOG0975|consen 124 RSAERACLPSPDVEEFIEAIKQLVLADKEWVPPPGKGSLYIRPLLIGTDPVLGVSPAPE--AT--LFVIVSPVGPYFKS 198 (379)
T ss_pred hhhhhccCCCCCHHHHHHHHHHHHHhcCcccCCCCCceEEEeeeeccCCcccccccCCc--ce--EEEEEcccchhccc
Confidence 99999999999999999999999999999999998999999999999999888876533 33 33334556665554
No 5
>PLN03117 Branched-chain-amino-acid aminotransferase; Provisional
Probab=99.96 E-value=9.4e-30 Score=239.72 Aligned_cols=135 Identities=32% Similarity=0.583 Sum_probs=122.3
Q ss_pred CcCCCCcccccCCceEEEEEeCCCcceeCCeeccCCCcccCccchhhhcCCeeeeeeeeeecCCCceeecCcchhHHHHH
Q psy16306 20 EVSQLKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMN 99 (302)
Q Consensus 20 ~~~~~~f~~~~~~~m~~~~~~~~~~~w~~g~~~~~~~~~i~~~~~~~~yG~~vfEg~r~y~~~~g~~~~Fr~~~H~~Rl~ 99 (302)
+|++++||.+|||||+.++|+++ .+|+||+++|.+++.||+.|+||+||||||||||+|+..+|++.+|++++|++||+
T Consensus 21 ~~~~~~f~~~~~~~m~~~~~~~~-~~~~ng~~v~~~~a~i~~~drgl~yGDGvFEtir~y~~~~G~i~lf~l~~Hl~RL~ 99 (355)
T PLN03117 21 KWEELGFALVPTDYMYVAKCKQG-ESFSEGKIVPYGDISISPCAGILNYGQGLFEGLKAYRTEDGRITLFRPDQNALRMQ 99 (355)
T ss_pred CccccCCCccccCceEEEEcCCC-CeEECCEEEEchhceeCcchhhhhhcceeEeeEEEEECCCCcEeeeCcHHHHHHHH
Confidence 35899999999999999999875 78999999999999999999999999999999999987788788999999999999
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHHhhccccccCCCCceeeeccccccccccccccc
Q psy16306 100 RSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKA 155 (302)
Q Consensus 100 ~S~~~l~~~~~~~~~l~~~~~~lv~~Ng~~vp~~~~~s~yirp~~~g~~~~~g~~~ 155 (302)
+||++|+||..+.++|.+++.+++..|+.++|......+|+|++++|.+...|+.+
T Consensus 100 ~Sa~~L~i~~p~~~~l~~~i~~lv~~n~~~i~~~~~~~~yir~~~~g~~~~~g~~~ 155 (355)
T PLN03117 100 TGADRLCMTPPSLEQFVEAVKQTVLANKKWVPPPGKGTLYIRPLLIGSGAVLGVAP 155 (355)
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHhccccccCCCCCcEEEEEEEEEecCccCcCC
Confidence 99999999944999999999999999999888765567899999988765555543
No 6
>PRK13357 branched-chain amino acid aminotransferase; Provisional
Probab=99.95 E-value=5.9e-28 Score=227.80 Aligned_cols=157 Identities=39% Similarity=0.706 Sum_probs=132.4
Q ss_pred EEecCCC--CCCCCCCcCCCCcccccCCceEEEEEeCCCcceeCCeeccCCCcccCccchhhhcCCeeeeeeeeeecCCC
Q psy16306 7 VQLCSPE--QLQPKPEVSQLKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDG 84 (302)
Q Consensus 7 ~~~~~~~--~~~~~~~~~~~~f~~~~~~~m~~~~~~~~~~~w~~g~~~~~~~~~i~~~~~~~~yG~~vfEg~r~y~~~~g 84 (302)
|+.-+++ ..++.++|.++|||++++|||+.+.|+++ .|+||+++|.+++.|++.|+||+||||||||+|+|++.+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~nG~~vp~~~a~is~~Drg~~yGDGvFEtir~~~~~~G 80 (356)
T PRK13357 3 VTLKPNPTSDEKRAIDWANLGFGYVFTDHMVVIDYKDG--KWHDARLVPYGPLELDPAATVLHYGQEIFEGLKAYRHKDG 80 (356)
T ss_pred cccCCCcccccccCCCccccCCCccccceeEEEEecCC--cccCCeEeeCCCceeCcccchhhhcceeeeeEEEEEcCCC
Confidence 4444444 36677778899999999999999999885 5999999999999999999999999999999999987788
Q ss_pred ceeecCcchhHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhhccccccC-CCCceeeecccccccccccccccccCCCCce
Q psy16306 85 HIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPH-TTAASLYIRPTLIGTDLFEGMKAYRGVDGHI 163 (302)
Q Consensus 85 ~~~~Fr~~~H~~Rl~~S~~~l~~~~~~~~~l~~~~~~lv~~Ng~~vp~-~~~~s~yirp~~~g~~~~~g~~~~~~~~~~i 163 (302)
++++|++++|++||.+||++|+||+++.++|.+++.+++..|+.+++. ..+..+|+|++++++....|..+.. .+++
T Consensus 81 ~~~~f~l~~Hl~RL~~Sa~~L~i~~~~~~~l~~~i~~li~~n~~~~~~~~~~~~~~ir~~v~rg~~~~g~~~~~--~~~~ 158 (356)
T PRK13357 81 SIVLFRPDANAKRLQRSADRLLMPELPEELFLEAVKQLVKADRDWVPPYGEGASLYLRPFMIATEPFLGVKPAE--EYIF 158 (356)
T ss_pred cEeeeChHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcccccCCCCCCccEEEEEEEEccCCcccccCCC--ccEE
Confidence 889999999999999999999999889999999999999999876532 3346789999999887666664332 2444
Q ss_pred EEec
Q psy16306 164 RMFR 167 (302)
Q Consensus 164 ~~f~ 167 (302)
.++.
T Consensus 159 ~i~~ 162 (356)
T PRK13357 159 CVIA 162 (356)
T ss_pred EEEE
Confidence 4443
No 7
>PRK12479 branched-chain amino acid aminotransferase; Provisional
Probab=99.88 E-value=2.3e-23 Score=192.40 Aligned_cols=111 Identities=18% Similarity=0.207 Sum_probs=98.7
Q ss_pred cceeCCeeccCCCcccCccchhhhcCCeeeeeeeeeecCCCceeecCcchhHHHHHHHHHHcCCC-CCCHHHHHHHHHHH
Q psy16306 44 GGWQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLP-QFDPEEMIQCLNRL 122 (302)
Q Consensus 44 ~~w~~g~~~~~~~~~i~~~~~~~~yG~~vfEg~r~y~~~~g~~~~Fr~~~H~~Rl~~S~~~l~~~-~~~~~~l~~~~~~l 122 (302)
.+|+||+++|.+++.|++.|||++|||||||++|+|++ ++|++++|++||.+||++|+|+ +++.+++.+.+.++
T Consensus 5 ~~~~nG~~~~~~~~~i~~~drg~~~GdgvFEt~r~~~g-----~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~~ 79 (299)
T PRK12479 5 YIYMNGEFVEKEKAVVSVYDHGFLYGDGVFEGIRSYGG-----NVFCLKEHVKRLYESAKSILLTIPLTVDEMEEAVLQT 79 (299)
T ss_pred EEEECCEEeEHHHCccccccchhheeeeEEEEEEEECC-----EecCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 69999999999999999999999999999999999976 8999999999999999999998 88999999999999
Q ss_pred HhhccccccCCCCceeeecccccccccccccccccCCCCceEEe
Q psy16306 123 IQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMF 166 (302)
Q Consensus 123 v~~Ng~~vp~~~~~s~yirp~~~g~~~~~g~~~~~~~~~~i~~f 166 (302)
+..|+. .+.|+|+.++++....|..+....++++.++
T Consensus 80 i~~~~~-------~~~~ir~~v~rg~g~~g~~~~~~~~~~~~i~ 116 (299)
T PRK12479 80 LQKNEY-------ADAYIRLIVSRGKGDLGLDPRSCVKPSVIII 116 (299)
T ss_pred HHHcCC-------CCeEEEEEEEecCCCCCCCCccCCCceEEEE
Confidence 999875 5679999999987667776654445555444
No 8
>PRK12400 D-amino acid aminotransferase; Reviewed
Probab=99.86 E-value=6.9e-23 Score=188.46 Aligned_cols=112 Identities=16% Similarity=0.124 Sum_probs=90.9
Q ss_pred cceeCCeeccCCC--cccCccchhhhcCCeeeeeeeeeecCCCceeecCcchhHHHHHHHHHHcCCC-CCCHHHHHHHHH
Q psy16306 44 GGWQAPRVSPLKY--LTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLP-QFDPEEMIQCLN 120 (302)
Q Consensus 44 ~~w~~g~~~~~~~--~~i~~~~~~~~yG~~vfEg~r~y~~~~g~~~~Fr~~~H~~Rl~~S~~~l~~~-~~~~~~l~~~~~ 120 (302)
.+|+||+++|.++ +.|++.|||++||||||||||+|++ ++|++++|++||.+||+.|+|+ +++.+++.+.+.
T Consensus 6 ~~~~ng~~v~~~~~~~~i~~~drgl~yGdgvFEtir~~~G-----~~~~l~~Hl~RL~~Sa~~L~i~~p~~~~~l~~~l~ 80 (290)
T PRK12400 6 FVLWNDAVIDTTKQKTYIELEERGLQFGDGVYEVIRLYKG-----NFHLLDPHITRLYRSMEEIELTLPFSKAELITLLY 80 (290)
T ss_pred EEEECCEEechHHcCceeccccchhhhcceEEEEEEEECC-----EecccHHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 6999999999994 5599999999999999999999975 8999999999999999999999 889999999999
Q ss_pred HHHhhccccccCCCCceeeecccccccccccccccccCCCCceEEe
Q psy16306 121 RLIQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMF 166 (302)
Q Consensus 121 ~lv~~Ng~~vp~~~~~s~yirp~~~g~~~~~g~~~~~~~~~~i~~f 166 (302)
+++..|+. ....++|..++++....|..+.....+++.++
T Consensus 81 ~~~~~~~~------~~~~~iri~v~rG~~~~~~~~~~~~~~~~~~~ 120 (290)
T PRK12400 81 KLIENNNF------HEDGTIYLQVSRGVQARTHTFSYDVPPTIYAY 120 (290)
T ss_pred HHHHhcCC------CCCEEEEEEEEeCCCCCCCCCCCCCCcEEEEE
Confidence 99999873 13456777777765444443332223444443
No 9
>PRK08320 branched-chain amino acid aminotransferase; Reviewed
Probab=99.86 E-value=1.3e-22 Score=186.40 Aligned_cols=111 Identities=21% Similarity=0.246 Sum_probs=97.3
Q ss_pred cceeCCeeccCCCcccCccchhhhcCCeeeeeeeeeecCCCceeecCcchhHHHHHHHHHHcCCC-CCCHHHHHHHHHHH
Q psy16306 44 GGWQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLP-QFDPEEMIQCLNRL 122 (302)
Q Consensus 44 ~~w~~g~~~~~~~~~i~~~~~~~~yG~~vfEg~r~y~~~~g~~~~Fr~~~H~~Rl~~S~~~l~~~-~~~~~~l~~~~~~l 122 (302)
.+|+||++++..++.|++.|||++|||||||++|++++ ++|++++|++||.+||+.|+|+ +++.+++.+.+.++
T Consensus 4 ~~~~nG~~~~~~~~~i~~~drg~~~GdgvFEt~~v~~g-----~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~~ 78 (288)
T PRK08320 4 LIYLNGEFVPKEEAKVSVFDHGFLYGDGVFEGIRAYNG-----RVFRLKEHIDRLYDSAKAIMLEIPLSKEEMTEIVLET 78 (288)
T ss_pred EEEECCEEEEHHHCcccccchhhhhcceEEEEEEEECC-----EeecHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHH
Confidence 48999999999999999999999999999999999976 8999999999999999999998 88999999999999
Q ss_pred HhhccccccCCCCceeeecccccccccccccccccCCCCceEEe
Q psy16306 123 IQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMF 166 (302)
Q Consensus 123 v~~Ng~~vp~~~~~s~yirp~~~g~~~~~g~~~~~~~~~~i~~f 166 (302)
+..|+. .+.++|+.++++....|..+.....+.+.++
T Consensus 79 i~~~~~-------~~~~iri~v~rg~g~~g~~~~~~~~~~~~~~ 115 (288)
T PRK08320 79 LRKNNL-------RDAYIRLVVSRGVGDLGLDPRKCPKPTVVCI 115 (288)
T ss_pred HHhcCC-------CCEEEEEEEEECCCcCCCCcccCCCceEEEE
Confidence 999875 5789999999876666766554444454444
No 10
>TIGR01121 D_amino_aminoT D-amino acid aminotransferase. Specificity is broad for various D-amino acids, and differs among members of the family; the family is designated equivalog, but with this caveat attached.
Probab=99.86 E-value=5.3e-23 Score=187.95 Aligned_cols=91 Identities=14% Similarity=0.239 Sum_probs=83.2
Q ss_pred ceeCCeeccCCCcccCccchhhhcCCeeeeeeeeeecCCCceeecCcchhHHHHHHHHHHcCCC-CCCHHHHHHHHHHHH
Q psy16306 45 GWQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLP-QFDPEEMIQCLNRLI 123 (302)
Q Consensus 45 ~w~~g~~~~~~~~~i~~~~~~~~yG~~vfEg~r~y~~~~g~~~~Fr~~~H~~Rl~~S~~~l~~~-~~~~~~l~~~~~~lv 123 (302)
+|+||+++|.+++.|++.|+||+||||||||||+|++ ++|++++|++||.+||+.|+|+ +++.+++.+.+.+++
T Consensus 2 ~~~nG~~~~~~~~~i~~~drgl~yGdgvFEtir~~~g-----~~~~l~~H~~RL~~Sa~~l~i~~~~~~~~l~~~i~~~~ 76 (276)
T TIGR01121 2 VLWNGQLVEREEAKIDIEDRGYQFGDGVYEVIRVYNG-----KLFTVNEHIDRLYASAAKIRIDIPYTKEELHQLLHELV 76 (276)
T ss_pred EEECCEEeEHHHCeecccccccccccEEEEEEEEECC-----EEeChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999976 8999999999999999999999 899999999999999
Q ss_pred hhccccccCCCCceeeeccccccc
Q psy16306 124 QIDQEWVPHTTAASLYIRPTLIGT 147 (302)
Q Consensus 124 ~~Ng~~vp~~~~~s~yirp~~~g~ 147 (302)
..|+. .+.++|..++++
T Consensus 77 ~~~~~-------~~~~irl~~~rg 93 (276)
T TIGR01121 77 EKNNL-------NTGHVYFQVTRG 93 (276)
T ss_pred HhcCC-------CceEEEEEEEcC
Confidence 99875 445666666654
No 11
>PRK06680 D-amino acid aminotransferase; Reviewed
Probab=99.86 E-value=7.5e-23 Score=187.89 Aligned_cols=112 Identities=12% Similarity=0.138 Sum_probs=91.9
Q ss_pred cceeCCeeccCCCcccCccchhhhcCCeeeeeeeeeecCCCceeecCcchhHHHHHHHHHHcCCC-CCCHHHHHHHHHHH
Q psy16306 44 GGWQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLP-QFDPEEMIQCLNRL 122 (302)
Q Consensus 44 ~~w~~g~~~~~~~~~i~~~~~~~~yG~~vfEg~r~y~~~~g~~~~Fr~~~H~~Rl~~S~~~l~~~-~~~~~~l~~~~~~l 122 (302)
.+|+||+++|.+++.|++.|+|++||||||||+|+|++ ++|++++|++||.+||+.|+|+ +++.++|.+++.++
T Consensus 4 ~~~~nG~~~~~~~~~i~~~drg~~yGdGvFEt~r~~~g-----~~~~l~~Hl~RL~~Sa~~L~i~~~~~~~~l~~~i~~~ 78 (286)
T PRK06680 4 IAYVNGRYVNHREARVHIEDRGFQFADGIYEVCAVRDG-----KLVDLDRHLARLFRSLGEIRIAPPMTRAELVEVLREL 78 (286)
T ss_pred EEEECCEEEEHHHCcccccccccceeeEEEEEEEEECC-----EEechHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 69999999999999999999999999999999999965 8999999999999999999999 88999999999999
Q ss_pred HhhccccccCCCCceeeeccccccccccccccccc-CCCCceEEec
Q psy16306 123 IQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYR-GVDGHIRMFR 167 (302)
Q Consensus 123 v~~Ng~~vp~~~~~s~yirp~~~g~~~~~g~~~~~-~~~~~i~~f~ 167 (302)
+..|+. .+.++|..++++....|..... ...+++.++.
T Consensus 79 ~~~~~~-------~~~~lr~~vtrG~~~~~~~~~~~~~~~~~~i~~ 117 (286)
T PRK06680 79 IRRNRV-------REGLVYLQVTRGVARRDHVFPAADVKPSVVVFA 117 (286)
T ss_pred HHHcCC-------CceEEEEEEEeCCCCCCCCCCCCCCCcEEEEEE
Confidence 999875 3456666666654333333221 2334555543
No 12
>TIGR01123 ilvE_II branched-chain amino acid aminotransferase, group II. Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family less similar to the DAAT family.
Probab=99.85 E-value=2.3e-21 Score=180.18 Aligned_cols=111 Identities=42% Similarity=0.801 Sum_probs=98.8
Q ss_pred eeCCeeccCCCcccCccchhhhcCCeeeeeeeeeecCCCceeecCcchhHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhh
Q psy16306 46 WQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQI 125 (302)
Q Consensus 46 w~~g~~~~~~~~~i~~~~~~~~yG~~vfEg~r~y~~~~g~~~~Fr~~~H~~Rl~~S~~~l~~~~~~~~~l~~~~~~lv~~ 125 (302)
|+||+++|.+++.|++.|||++||||||||||+|+..+|++.+|++++|++||.+||++|+||+++.++|.+.+.+++..
T Consensus 1 ~~nG~~~~~~~a~i~~~Drg~~yGdGvFEtir~~~~~~g~~~~~~l~~Hl~RL~~sa~~L~i~~~~~~~l~~~l~~~~~~ 80 (313)
T TIGR01123 1 WHNGRLTPYGPLHLDPGSTVLHYGQECFEGLKAYRCADGSIVLFRPDANAARLRRSARRLLMPELPDELFLEALRQLVKA 80 (313)
T ss_pred CCCCEEEECccCeeCcchhHHHhhhhheeeeeEEECCCCcEeeeChHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999997667877799999999999999999999977999999999999999
Q ss_pred ccccccCC-CCceeeecccccccccccccccc
Q psy16306 126 DQEWVPHT-TAASLYIRPTLIGTDLFEGMKAY 156 (302)
Q Consensus 126 Ng~~vp~~-~~~s~yirp~~~g~~~~~g~~~~ 156 (302)
|+.+++.. .+..+|+|+++++++...|..+.
T Consensus 81 ~~~~~~~~~~~~~~~ir~~v~~~~~~~g~~~~ 112 (313)
T TIGR01123 81 NKDWVPPYGSGASLYLRPFVIGTEPNLGVRPA 112 (313)
T ss_pred ccccCCCCCCCCcEEEEeEEEecCCccccCCC
Confidence 98765532 35678999999988766666543
No 13
>cd01558 D-AAT_like D-Alanine aminotransferase (D-AAT_like): D-amino acid aminotransferase catalyzes transamination between D-amino acids and their respective alpha-keto acids. It plays a major role in the synthesis of bacterial cell wall components like D-alanine and D-glutamate in addition to other D-amino acids. The enzyme like other members of this superfamily requires PLP as a cofactor. Members of this subgroup are found in all three forms of life.
Probab=99.85 E-value=2.2e-22 Score=183.23 Aligned_cols=109 Identities=16% Similarity=0.264 Sum_probs=88.6
Q ss_pred eeCCeeccCCCcccCccchhhhcCCeeeeeeeeeecCCCceeecCcchhHHHHHHHHHHcCCC-CCCHHHHHHHHHHHHh
Q psy16306 46 WQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLP-QFDPEEMIQCLNRLIQ 124 (302)
Q Consensus 46 w~~g~~~~~~~~~i~~~~~~~~yG~~vfEg~r~y~~~~g~~~~Fr~~~H~~Rl~~S~~~l~~~-~~~~~~l~~~~~~lv~ 124 (302)
|+||+++|.+++.|++.|+|++||||||||||+|++ ++|++++|++||.+||+.|+|| +++.+++.+.+.+++.
T Consensus 1 ~~nG~~~~~~~~~i~~~d~g~~~G~gvFEt~r~~~g-----~~~~l~~Hl~RL~~Sa~~l~~~~~~~~~~l~~~i~~~~~ 75 (270)
T cd01558 1 YLNGEYVPREEAKVSVFDRGFLFGDGVYEVIRVYNG-----KPFALDEHLDRLYRSAKELRIDIPYTREELKELIRELVA 75 (270)
T ss_pred CcCCeEeEHHHCccccccchhcccceEEEEEEEECC-----EEecHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999976 8999999999999999999999 8899999999999999
Q ss_pred hccccccCCCCceeeecccccccccccccccccCCCCceEEe
Q psy16306 125 IDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMF 166 (302)
Q Consensus 125 ~Ng~~vp~~~~~s~yirp~~~g~~~~~g~~~~~~~~~~i~~f 166 (302)
.|+. ....+++++ +.+....|..+.....+.+.++
T Consensus 76 ~~~~-----~~~~~~~~~--t~g~~~~~~~~~~~~~~~~~i~ 110 (270)
T cd01558 76 KNEG-----GEGDVYIQV--TRGVGPRGHDFPKCVKPTVVII 110 (270)
T ss_pred HcCC-----CCceEEEEE--EeCCCccCCCCCCCCCCEEEEE
Confidence 9864 234566665 4333334444433333444443
No 14
>TIGR01122 ilvE_I branched-chain amino acid aminotransferase, group I. Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family more strongly similar to the DAAT family.
Probab=99.83 E-value=9.5e-21 Score=174.90 Aligned_cols=113 Identities=23% Similarity=0.401 Sum_probs=98.7
Q ss_pred eeCCeeccCCCcccCccchhhhcCCeeeeeeeeeecCCCceeecCcchhHHHHHHHHHHcCCC-CCCHHHHHHHHHHHHh
Q psy16306 46 WQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLP-QFDPEEMIQCLNRLIQ 124 (302)
Q Consensus 46 w~~g~~~~~~~~~i~~~~~~~~yG~~vfEg~r~y~~~~g~~~~Fr~~~H~~Rl~~S~~~l~~~-~~~~~~l~~~~~~lv~ 124 (302)
|+||+++|.+++.|++.|+|++|||||||++|+|++++| .++|++++|++||.+||++|+|+ +++.++|.+++.+++.
T Consensus 1 ~~ng~~v~~~~~~i~~~drg~~~GdgvFEt~r~~~g~~~-~~~~~l~~Hl~RL~~Sa~~l~i~~~~~~~~l~~~i~~~i~ 79 (298)
T TIGR01122 1 WMDGEFVDWEDAKVHVLTHALHYGTGVFEGIRAYDTDKG-PAIFRLKEHIQRLYDSAKIYRMEIPYSKEELMEATRETLR 79 (298)
T ss_pred CcCCEEEEhhhcccChhhhhhhccceEEEEEEEEcCCCc-ceeeChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999998775 58999999999999999999999 8899999999999999
Q ss_pred hccccccCCCCceeeecccccccccccccccccCCCCceEEe
Q psy16306 125 IDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMF 166 (302)
Q Consensus 125 ~Ng~~vp~~~~~s~yirp~~~g~~~~~g~~~~~~~~~~i~~f 166 (302)
.|+. .+.|+|++++++....|..+.....+++.++
T Consensus 80 ~~~~-------~~~~ir~~v~rg~~~~g~~~~~~~~~~~~v~ 114 (298)
T TIGR01122 80 KNNL-------RSAYIRPLVFRGDGDLGLNPRAGYKPDVIIA 114 (298)
T ss_pred hcCC-------CCEEEEEEEEEccCCCCcCCCCCCCceEEEE
Confidence 9985 5789999999887666665533334454444
No 15
>PRK07544 branched-chain amino acid aminotransferase; Validated
Probab=99.82 E-value=2.4e-20 Score=171.82 Aligned_cols=101 Identities=23% Similarity=0.395 Sum_probs=92.6
Q ss_pred cceeCCeeccCCCcccCccchhhhcCCeeeeeeeeeecCCCceeecCcchhHHHHHHHHHHcCCC-CCCHHHHHHHHHHH
Q psy16306 44 GGWQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLP-QFDPEEMIQCLNRL 122 (302)
Q Consensus 44 ~~w~~g~~~~~~~~~i~~~~~~~~yG~~vfEg~r~y~~~~g~~~~Fr~~~H~~Rl~~S~~~l~~~-~~~~~~l~~~~~~l 122 (302)
.+|+||+++|.+++.|++.|+||+||||||||+|+|++ ++|++++|++||.+||+.|+|+ +++.+++.+++.++
T Consensus 10 ~~~~nG~~~~~~~~~i~~~drg~~~GdgvFEt~r~~~g-----~~~~l~~Hl~RL~~Sa~~l~i~~~~~~~~l~~~i~~~ 84 (292)
T PRK07544 10 FIWMDGELVPWRDAKVHVLTHGLHYASSVFEGERAYGG-----KIFKLREHSERLRRSAELLDFEIPYSVAEIDAAKKET 84 (292)
T ss_pred eEEECCEEEEhHHCccChhhhHhhhcceeEEeeEeeCC-----cccChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 68999999999999999999999999999999999976 8999999999999999999999 88999999999999
Q ss_pred HhhccccccCCCCceeeecccccccccccccccc
Q psy16306 123 IQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAY 156 (302)
Q Consensus 123 v~~Ng~~vp~~~~~s~yirp~~~g~~~~~g~~~~ 156 (302)
+..|+. .+.|+|++++++....|..+.
T Consensus 85 i~~~~~-------~~~~ir~~v~rg~~~~g~~~~ 111 (292)
T PRK07544 85 LAANGL-------TDAYVRPVAWRGSEMMGVSAQ 111 (292)
T ss_pred HHhcCC-------CCeEEEEEEEecCCCCCcCCC
Confidence 999985 567999999998765565543
No 16
>PRK06606 branched-chain amino acid aminotransferase; Validated
Probab=99.81 E-value=1e-19 Score=168.72 Aligned_cols=105 Identities=24% Similarity=0.409 Sum_probs=94.9
Q ss_pred cceeCCeeccCCCcccCccchhhhcCCeeeeeeeeeecCCCceeecCcchhHHHHHHHHHHcCCC-CCCHHHHHHHHHHH
Q psy16306 44 GGWQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLP-QFDPEEMIQCLNRL 122 (302)
Q Consensus 44 ~~w~~g~~~~~~~~~i~~~~~~~~yG~~vfEg~r~y~~~~g~~~~Fr~~~H~~Rl~~S~~~l~~~-~~~~~~l~~~~~~l 122 (302)
.+|+||+++|.+++.|++.|+||+|||||||++|+|++.+|+ ++|++++|++||.+||+.|+|+ +++.++|.+.+.++
T Consensus 8 ~~~~nG~~~~~~~~~i~~~drg~~~GdgvFEtir~~~g~~~~-~~~~l~~Hl~RL~~Sa~~l~i~~~~~~~~l~~~i~~~ 86 (306)
T PRK06606 8 YIWFNGELVPWEDAKVHVLTHALHYGTGVFEGIRAYDTPKGP-AIFRLREHTKRLFNSAKILRMEIPYSVDELMEAQREV 86 (306)
T ss_pred cEEECCEEEEhHHcccChhhhhhhhcceeEEEEEEecCCCCC-eeeChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 689999999999999999999999999999999999986553 4999999999999999999999 88999999999999
Q ss_pred HhhccccccCCCCceeeecccccccccccccccc
Q psy16306 123 IQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAY 156 (302)
Q Consensus 123 v~~Ng~~vp~~~~~s~yirp~~~g~~~~~g~~~~ 156 (302)
+..|+. .+.|+|++++++....|..+.
T Consensus 87 i~~~~~-------~~~~ir~~v~rg~~~~g~~~~ 113 (306)
T PRK06606 87 VRKNNL-------KSAYIRPLVFVGDEGLGVRPH 113 (306)
T ss_pred HHhcCC-------CCEEEEEEEEecCCccCcCCC
Confidence 999985 578999999988766566533
No 17
>PLN02845 Branched-chain-amino-acid aminotransferase-like protein
Probab=99.79 E-value=2.1e-19 Score=168.36 Aligned_cols=110 Identities=14% Similarity=0.131 Sum_probs=92.8
Q ss_pred ceeCCeeccCCCcccCccchhhhcCCeeeeeeeeeecCCCceeecCcchhHHHHHHHHHHcCCC-CCCHHHHHHHHHHHH
Q psy16306 45 GWQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLP-QFDPEEMIQCLNRLI 123 (302)
Q Consensus 45 ~w~~g~~~~~~~~~i~~~~~~~~yG~~vfEg~r~y~~~~g~~~~Fr~~~H~~Rl~~S~~~l~~~-~~~~~~l~~~~~~lv 123 (302)
+|+||+++|.+++.|++.|+|++|||||||+||+++| ++|++++|++||.+||+.|+|+ +++.+++.+++.+++
T Consensus 43 ~~~nG~~v~~~~a~i~~~Drgl~~GdGvFETirv~~G-----~~~~le~Hl~RL~~Sa~~L~i~~p~~~~~l~~~i~~~i 117 (336)
T PLN02845 43 SVVGGITTDPAAMVIPLDDHMVHRGHGVFDTATIRDG-----HLYELDAHLDRFLRSAAKAKIPLPFDRATLRRILLQTV 117 (336)
T ss_pred EEECCEEccHHHCcccccccceeecceEEEEEEEECC-----EEcCHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999976 8999999999999999999999 889999999999999
Q ss_pred hhccccccCCCCceeeecccccccccccccccccCCCCceEEe
Q psy16306 124 QIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMF 166 (302)
Q Consensus 124 ~~Ng~~vp~~~~~s~yirp~~~g~~~~~g~~~~~~~~~~i~~f 166 (302)
..|+. .+.++|..++++....++.+.....+++.++
T Consensus 118 ~~~~~-------~~~~irl~vtrG~g~~~~~~~~~~~~~~~i~ 153 (336)
T PLN02845 118 AASGC-------RNGSLRYWLSAGPGGFSLSPSGCSEPAFYAV 153 (336)
T ss_pred HhcCC-------CcEEEEEEEEeCCCCCCCCCCCCCCCEEEEE
Confidence 99875 4668888888765433443333333444443
No 18
>PRK13356 aminotransferase; Provisional
Probab=99.79 E-value=3.1e-19 Score=163.89 Aligned_cols=95 Identities=22% Similarity=0.266 Sum_probs=87.2
Q ss_pred cceeCCeeccCCCcccCccchhhhcCCeeeeeeeeeecCCCceeecCcchhHHHHHHHHHHcCCC-CCCHHHHHHHHHHH
Q psy16306 44 GGWQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLP-QFDPEEMIQCLNRL 122 (302)
Q Consensus 44 ~~w~~g~~~~~~~~~i~~~~~~~~yG~~vfEg~r~y~~~~g~~~~Fr~~~H~~Rl~~S~~~l~~~-~~~~~~l~~~~~~l 122 (302)
.+|+||++++.+++.|++.|+|++|||||||++|+|++ ++|++++|++||.+||+.|+|+ +++.++|.+.+.++
T Consensus 8 ~~~~nG~~~~~~~~~i~~~drg~~yGdgvFEtir~~~g-----~~~~l~~Hl~RL~~Sa~~L~i~~~~~~~~l~~~i~~~ 82 (286)
T PRK13356 8 WTFFDGEWHEGNVPIMGPADHAAWLGSTVFDGARAFEG-----VTPDLDLHCARVNRSAEALGLKPTVSAEEIEALAREG 82 (286)
T ss_pred eEEECCEEcchhhcccccccchhhhcceeEEEEEEecC-----CCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 58999999999999999999999999999999999976 8999999999999999999998 88999999999999
Q ss_pred HhhccccccCCCCceeeeccccccccc
Q psy16306 123 IQIDQEWVPHTTAASLYIRPTLIGTDL 149 (302)
Q Consensus 123 v~~Ng~~vp~~~~~s~yirp~~~g~~~ 149 (302)
+..|+. ..+.|+|++++++..
T Consensus 83 i~~~~~------~~~~~ir~~v~rg~g 103 (286)
T PRK13356 83 LKRFDP------DTALYIRPMYWAEDG 103 (286)
T ss_pred HHHcCC------CCcEEEEEEEEeccC
Confidence 999864 246899999997643
No 19
>PRK07650 4-amino-4-deoxychorismate lyase; Provisional
Probab=99.78 E-value=3.9e-19 Score=163.04 Aligned_cols=110 Identities=15% Similarity=0.211 Sum_probs=94.1
Q ss_pred ceeCCeeccCCCcccCccchhhhcCCeeeeeeeeeecCCCceeecCcchhHHHHHHHHHHcCCC-CCCHHHHHHHHHHHH
Q psy16306 45 GWQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLP-QFDPEEMIQCLNRLI 123 (302)
Q Consensus 45 ~w~~g~~~~~~~~~i~~~~~~~~yG~~vfEg~r~y~~~~g~~~~Fr~~~H~~Rl~~S~~~l~~~-~~~~~~l~~~~~~lv 123 (302)
+|+||+++|.+++.+++.|+|++|||||||++|+|+| ++|++++|++||.+||+.|+|+ +++.+++.+.+.+++
T Consensus 2 ~~~nG~~~~~~~~~v~~~drg~~~GdgvFEt~r~~~g-----~~~~l~~Hl~RL~~Sa~~l~~~~~~~~~~l~~~l~~~~ 76 (283)
T PRK07650 2 IYVNGQYVEEEEARISPFDHGYLYGLGVFETFRIYNG-----HPFLLDDHYDRLNDALDTLQIEWTMTKDEVLLILKNLL 76 (283)
T ss_pred EEECCEEeEHHHCeecccccccccccEEEEEEEEECC-----EEEcHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999976 8999999999999999999999 889999999999999
Q ss_pred hhccccccCCCCceeeecccccccccccccccccCCCCceEEe
Q psy16306 124 QIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMF 166 (302)
Q Consensus 124 ~~Ng~~vp~~~~~s~yirp~~~g~~~~~g~~~~~~~~~~i~~f 166 (302)
..|+. .+.++|..++++....|..+.....+++.++
T Consensus 77 ~~~~~-------~~~~iRl~v~rg~~~~~~~~~~~~~~~~~i~ 112 (283)
T PRK07650 77 EKNGL-------ENAYVRFNVSAGIGEIGLQTEMYEEPTVIVY 112 (283)
T ss_pred HhcCC-------CcEEEEEEEEeCCCCCCCCCCCCCCCEEEEE
Confidence 98874 5789999999875555554332233444443
No 20
>COG0115 IlvE Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.77 E-value=1.3e-18 Score=159.67 Aligned_cols=101 Identities=31% Similarity=0.486 Sum_probs=93.2
Q ss_pred cceeCCeeccCCCcccCccchhhhcCCeeeeeeeeeecCCCceeecCcchhHHHHHHHHHHcCCC-CCCHHHHHHHHHHH
Q psy16306 44 GGWQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLP-QFDPEEMIQCLNRL 122 (302)
Q Consensus 44 ~~w~~g~~~~~~~~~i~~~~~~~~yG~~vfEg~r~y~~~~g~~~~Fr~~~H~~Rl~~S~~~l~~~-~~~~~~l~~~~~~l 122 (302)
.+|.||+++|.+++++++.|+++|||++||||+|+|++ .+|++++|++||++||+.|+|| +++.+++..+...+
T Consensus 3 ~~~~~g~~~~~~~~~~~~~~~~~~~g~~vFE~~r~~~g-----~~~~l~~H~~RL~~Sa~~l~~~~~~~~~~~~~~~~~~ 77 (284)
T COG0115 3 KIWVNGELVPEEDAKLSVLDRGLHYGDGVFETLRAYNG-----KLFRLDEHLARLKRSAKRLGLPRPESEEEIELLIQLL 77 (284)
T ss_pred eEeECCEEccCcccccCcccceeccccceeEEEEEeCC-----cccChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 58999999999999999999999999999999999984 8999999999999999999999 89999999999999
Q ss_pred HhhccccccCCCCceeeeccccccccccccccc
Q psy16306 123 IQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKA 155 (302)
Q Consensus 123 v~~Ng~~vp~~~~~s~yirp~~~g~~~~~g~~~ 155 (302)
+..|+.. ..+|+||++++.+...|+++
T Consensus 78 ~~~~~~~------~~~y~r~~~~~~~~~~~~~~ 104 (284)
T COG0115 78 LAKNNLV------PGLYIRPLVRGGGGGLGVRD 104 (284)
T ss_pred HHhhCCC------CceEEEEEEEeecCCCCcCC
Confidence 9888752 33999999999888888777
No 21
>cd01557 BCAT_beta_family BCAT_beta_family: Branched-chain aminotransferase catalyses the transamination of the branched-chain amino acids leusine, isoleucine and valine to their respective alpha-keto acids, alpha-ketoisocaproate, alpha-keto-beta-methylvalerate and alpha-ketoisovalerate. The enzyme requires pyridoxal 5'-phosphate (PLP) as a cofactor to catalyze the reaction. It has been found that mammals have two foms of the enzyme - mitochondrial and cytosolic forms while bacteria contain only one form of the enzyme. The mitochondrial form plays a significant role in skeletal muscle glutamine and alanine synthesis and in interorgan nitrogen metabolism.Members of this subgroup are widely distributed in all three forms of life.
Probab=99.75 E-value=4.3e-18 Score=155.82 Aligned_cols=99 Identities=51% Similarity=0.907 Sum_probs=87.7
Q ss_pred ccCccchhhhcCCeeeeeeeeeecCCCceeecCcchhHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhhccccccCCCCce
Q psy16306 58 TLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAAS 137 (302)
Q Consensus 58 ~i~~~~~~~~yG~~vfEg~r~y~~~~g~~~~Fr~~~H~~Rl~~S~~~l~~~~~~~~~l~~~~~~lv~~Ng~~vp~~~~~s 137 (302)
+|++.|+|++|||||||++|+|++.||+.++|++++|++||.+||+.|+|++++.++|.+++.+++..|+.|.|.....+
T Consensus 1 ~i~~~drg~~yGdgvFEtir~~~~~~g~g~~~~l~~Hl~RL~~sa~~l~i~~~~~~~l~~~i~~~i~~~~~~~~~~~~~~ 80 (279)
T cd01557 1 SLHPATHALHYGQAVFEGLKAYRTPDGKIVLFRPDENAERLNRSARRLGLPPFSVEEFIDAIKELVKLDADWVPYGGGAS 80 (279)
T ss_pred CcCccccHhhcChhheeeEEEEecCCCCEeEECHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhccccCCCCCCCC
Confidence 47999999999999999999998666666899999999999999999999988999999999999999998877655567
Q ss_pred eeecccccccccccccccc
Q psy16306 138 LYIRPTLIGTDLFEGMKAY 156 (302)
Q Consensus 138 ~yirp~~~g~~~~~g~~~~ 156 (302)
.|+|++++++....|..+.
T Consensus 81 ~~ir~~v~rg~~~~g~~~~ 99 (279)
T cd01557 81 LYIRPFIFGTDPQLGVSPA 99 (279)
T ss_pred EEEEEEEEeccccCCcCCC
Confidence 9999999998766665543
No 22
>PRK07849 4-amino-4-deoxychorismate lyase; Provisional
Probab=99.70 E-value=3e-17 Score=151.23 Aligned_cols=95 Identities=20% Similarity=0.148 Sum_probs=83.5
Q ss_pred cceeCC-----eeccCCCcccCccchhhhcCCeeeeeeeeeecCCCceeecCcchhHHHHHHHHHHcCCCCCCHHHHHHH
Q psy16306 44 GGWQAP-----RVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQC 118 (302)
Q Consensus 44 ~~w~~g-----~~~~~~~~~i~~~~~~~~yG~~vfEg~r~y~~~~g~~~~Fr~~~H~~Rl~~S~~~l~~~~~~~~~l~~~ 118 (302)
.+|+|| +++|.+++.|++.|+|++||||||||||++++ ++|.+++|++||.+||+.|+|+..+.+++.++
T Consensus 8 ~~~~ng~~~~~~~~~~~~a~i~~~drg~~~GdgvFEt~rv~~g-----~i~~l~~Hl~RL~~Sa~~l~i~~~~~~~l~~~ 82 (292)
T PRK07849 8 VVTLDPYGGSERVHDPSAPLLHADDLAAVRGDGVFETLLVRDG-----RPCNLEAHLERLARSAALLDLPEPDLDRWRRA 82 (292)
T ss_pred EEEECCCCccceEechHHCCccchhcchhccceEEEEEEEECC-----EECCHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 699999 99999999999999999999999999999976 89999999999999999999994489999999
Q ss_pred HHHHHhhccccccCCCCceeeecccccccc
Q psy16306 119 LNRLIQIDQEWVPHTTAASLYIRPTLIGTD 148 (302)
Q Consensus 119 ~~~lv~~Ng~~vp~~~~~s~yirp~~~g~~ 148 (302)
+.+++..|+. .....++|.+++.+.
T Consensus 83 i~~~v~~~~~-----~~~~~~iRl~v~~g~ 107 (292)
T PRK07849 83 VELAIEEWRA-----PEDEAALRLVYSRGR 107 (292)
T ss_pred HHHHHHHhcC-----CCCCeEEEEEEeCCC
Confidence 9999998741 014567787766653
No 23
>TIGR03461 pabC_Proteo aminodeoxychorismate lyase. Members of this protein family are aminodeoxychorismate lyase (ADC lyase), EC 4.1.3.38, the PabC protein of PABA biosynthesis. PABA (para-aminobenzoate) is a precursor of folate, needed for de novo purine biosynthesis. This enzyme is a pyridoxal-phosphate-binding protein in the class IV aminotransferase family (pfam01063).
Probab=99.67 E-value=2.1e-16 Score=143.19 Aligned_cols=92 Identities=15% Similarity=0.214 Sum_probs=76.8
Q ss_pred eeCCeeccCCCcccCccchhhhcCCeeeeeeeeeecCCCceeecCcchhHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhh
Q psy16306 46 WQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQI 125 (302)
Q Consensus 46 w~~g~~~~~~~~~i~~~~~~~~yG~~vfEg~r~y~~~~g~~~~Fr~~~H~~Rl~~S~~~l~~~~~~~~~l~~~~~~lv~~ 125 (302)
|+||++ ++.|++.|+|++||+|||||+|+++| ++|++++|++||.+||+.|+||..+.+++.+.+.+++..
T Consensus 1 ~~nG~~----~~~i~~~d~g~~~G~gvFEt~r~~~G-----~~~~l~~Hl~RL~~Sa~~l~~~~~~~~~l~~~~~~~~~~ 71 (261)
T TIGR03461 1 WVNGVL----QTQISVSDRGLQYGDGCFTTAKVRNG-----KIELLDLHLERLQDAAARLGIPLPDWDALREEMAQLAAG 71 (261)
T ss_pred CcCCcc----cCccCcccccccccceeEEEEEEECC-----EeccHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHh
Confidence 889995 78899999999999999999999975 899999999999999999999944899999999999887
Q ss_pred ccccccCCCCceeeeccccccccccccccc
Q psy16306 126 DQEWVPHTTAASLYIRPTLIGTDLFEGMKA 155 (302)
Q Consensus 126 Ng~~vp~~~~~s~yirp~~~g~~~~~g~~~ 155 (302)
+. +.++|..++.+....|..+
T Consensus 72 ~~---------~~~ir~~v~~g~~~~~~~~ 92 (261)
T TIGR03461 72 YS---------LGVLKVIISRGSGGRGYSP 92 (261)
T ss_pred CC---------CeEEEEEEecCCCCCCCCC
Confidence 53 3466766666543334443
No 24
>PRK09266 hypothetical protein; Provisional
Probab=99.66 E-value=2.8e-16 Score=142.92 Aligned_cols=91 Identities=15% Similarity=0.112 Sum_probs=78.4
Q ss_pred cceeCCeeccCCCcccCccchhhhcCCeeeeeeeeeecCCCceeecCcchhHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q psy16306 44 GGWQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLI 123 (302)
Q Consensus 44 ~~w~~g~~~~~~~~~i~~~~~~~~yG~~vfEg~r~y~~~~g~~~~Fr~~~H~~Rl~~S~~~l~~~~~~~~~l~~~~~~lv 123 (302)
.+|+||+++|.+++. +|++|||||||+||++++ ++|++++|++||.+||+.|.+++++.+++.+++.+++
T Consensus 4 ~~~~nG~~~~~~~a~-----~~~~~GdgvFETir~~~g-----~~~~l~~Hl~RL~~sa~~l~~~~~~~~~l~~~l~~~~ 73 (266)
T PRK09266 4 LIELNGRPATAEDLA-----ALALANYGHFTSMQVRDG-----RVRGLDLHLQRLRRASRELFGAALDDDRVRAQLRAAL 73 (266)
T ss_pred EEEECCEECCHHHhh-----hHhhccceEEEEEEEECC-----EEcCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 689999999999987 499999999999999975 8999999999999999999777889999999999998
Q ss_pred hhccccccCCCCceeeecccccccccccc
Q psy16306 124 QIDQEWVPHTTAASLYIRPTLIGTDLFEG 152 (302)
Q Consensus 124 ~~Ng~~vp~~~~~s~yirp~~~g~~~~~g 152 (302)
.++. .+.++|+.++++....|
T Consensus 74 -~~~~-------~~~~ir~~v~r~~g~~~ 94 (266)
T PRK09266 74 -AAGP-------ADASVRVTVFAPDFDFR 94 (266)
T ss_pred -hcCC-------CcEEEEEEEEecCcccC
Confidence 4443 46799999886543333
No 25
>PRK06092 4-amino-4-deoxychorismate lyase; Reviewed
Probab=99.65 E-value=4.8e-16 Score=141.45 Aligned_cols=104 Identities=12% Similarity=0.090 Sum_probs=81.1
Q ss_pred ceeCCeeccCCCcccCccchhhhcCCeeeeeeeeeecCCCceeecCcchhHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh
Q psy16306 45 GWQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQ 124 (302)
Q Consensus 45 ~w~~g~~~~~~~~~i~~~~~~~~yG~~vfEg~r~y~~~~g~~~~Fr~~~H~~Rl~~S~~~l~~~~~~~~~l~~~~~~lv~ 124 (302)
+|+||++ ++.|++.|+|++|||||||++|++++ ++|++++|++||.+||+.|+||..+.+++.+.+.+++
T Consensus 2 ~~~nG~~----~~~i~~~d~g~~~GdgvFEtir~~~g-----~~~~l~~Hl~RL~~Sa~~l~~~~~~~~~~~~~l~~~~- 71 (268)
T PRK06092 2 FWINGQP----QESLSVSDRSTQYGDGCFTTARVRDG-----QVSLLSRHLQRLQDACERLAIPLDDWAQLEQEMKQLA- 71 (268)
T ss_pred EEECCcC----cCccCccccccccccceeeEEEEECC-----eeccHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH-
Confidence 6999996 68899999999999999999999976 8999999999999999999999446778888777776
Q ss_pred hccccccCCCCceeeecccccccccccccccccCCCCceEEe
Q psy16306 125 IDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMF 166 (302)
Q Consensus 125 ~Ng~~vp~~~~~s~yirp~~~g~~~~~g~~~~~~~~~~i~~f 166 (302)
++. .+.++|..++.+....|..+.....+.+.++
T Consensus 72 -~~~-------~~~~iri~v~~g~~~~~~~~~~~~~~~~~i~ 105 (268)
T PRK06092 72 -AEL-------ENGVLKVIISRGSGGRGYSPAGCAAPTRILS 105 (268)
T ss_pred -hhC-------CCeEEEEEEEccCCCCCCCCCCCCCCeEEEE
Confidence 222 3557788887765545555444444444444
No 26
>PLN02782 Branched-chain amino acid aminotransferase
Probab=99.62 E-value=5.7e-17 Score=154.87 Aligned_cols=171 Identities=24% Similarity=0.411 Sum_probs=126.2
Q ss_pred HhhccccccCC-CCceeeecccccccccccccccccCCCCceEEecccchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Q psy16306 123 IQIDQEWVPHT-TAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLPQFDPEEMIQCLNRLIQ 201 (302)
Q Consensus 123 v~~Ng~~vp~~-~~~s~yirp~~~g~~~~~g~~~~~~~~~~i~~f~~~~h~~Rl~~s~~~l~~~~~~~e~l~~gi~~ii~ 201 (302)
-|.|+.++|.+ ...++..|.++||+++|||++++++.++.+.+|+|++|++||.+||++++||.++.+++.+++..++.
T Consensus 95 ~w~ng~ivp~~~~~i~~~d~gl~YGdgvFEg~kayr~~~G~i~lFr~d~H~~RL~~SA~rL~lp~~~~e~l~~~i~~lv~ 174 (403)
T PLN02782 95 EFSKGELQRFGNIELSPSAGVLNYGQGLFEGLKAYRKEDGNILLFRPEENAIRMRNGAERMCMPAPTVEQFVEAVKETVL 174 (403)
T ss_pred cEeCCEEEECCCCEeChhhhHHhhhhhhhheEEEEEcCCCcEeeeChHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHH
Confidence 47899999976 47889999999999999999999888889999999999999999999999995599999999999999
Q ss_pred hcccccccCCCceeeecceeeccccccccccccCCCCcccc--------CCchhhHHHHHHHH-HHhCCC----------
Q psy16306 202 IDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRM--------FRPEMNMDRMNRSA-LRAGLP---------- 262 (302)
Q Consensus 202 ~ng~~vp~~~~~s~ylr~~l~g~~~feG~r~~~~~~~~~~i--------f~~~~h~~RL~~Sa-~~r~~~---------- 262 (302)
.|+.|+|.....++|+|++++|++...|+.+.... ...+ |.......+|..+. ..|..+
T Consensus 175 ~n~~~vP~~~~~~lyiRp~v~g~~~~lG~~~~~~~--~~~i~~~p~~~~~~~g~~~v~l~v~~~~~Ra~p~g~g~~Kt~~ 252 (403)
T PLN02782 175 ANKRWVPPPGKGSLYIRPLLMGSGAVLGLAPAPEY--TFLIYVSPVGNYFKEGVAPINLIVENEFHRATPGGTGGVKTIG 252 (403)
T ss_pred hccccCCCCCCccEEEEEEEEecCCCcCcCCCCCc--EEEEEEEECccccccCCccEEEEEeCceeecCCCCCcccchhh
Confidence 99999997654589999999998777777643211 1111 11000112233332 223222
Q ss_pred CCCH------HHHHHHHHHHHHHc---CCccCCCCcccEEEE
Q psy16306 263 QFDP------EEMIQCLNRLIQID---QEWVPHTTAASLYIR 295 (302)
Q Consensus 263 ~~~~------~~l~~~~~e~l~~n---~~~v~e~~~~n~yir 295 (302)
++.. +...++++++|.+| +|+|+|++.+|+|+.
T Consensus 253 nY~~~l~a~~eA~~~G~de~L~Ld~~~~g~V~E~~~sNlF~v 294 (403)
T PLN02782 253 NYAAVLKAQSIAKAKGYSDVLYLDCVHKKYLEEVSSCNIFIV 294 (403)
T ss_pred hHHHHHHHHHHHHHcCCCEEEEEeCCCCCEEEEcCcEEEEEE
Confidence 1111 01134456667777 589999999999986
No 27
>cd01559 ADCL_like ADCL_like: 4-Amino-4-deoxychorismate lyase: is a member of the fold-type IV of PLP dependent enzymes that converts 4-amino-4-deoxychorismate (ADC) to p-aminobenzoate and pyruvate. Based on the information available from the crystal structure, most members of this subgroup are likely to function as dimers. The enzyme from E.Coli, the structure of which is available, is a homodimer that is folded into a small and a larger domain. The coenzyme pyridoxal 5; -phosphate resides at the interface of the two domains that is linked by a flexible loop. Members of this subgroup are found in Eukaryotes and bacteria.
Probab=99.59 E-value=3.4e-15 Score=134.40 Aligned_cols=91 Identities=24% Similarity=0.309 Sum_probs=75.5
Q ss_pred chhhhcCCeeeeeeeeeecCCCceeecCcchhHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhhccccccCCCCceeeecc
Q psy16306 63 AKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRP 142 (302)
Q Consensus 63 ~~~~~yG~~vfEg~r~y~~~~g~~~~Fr~~~H~~Rl~~S~~~l~~~~~~~~~l~~~~~~lv~~Ng~~vp~~~~~s~yirp 142 (302)
|+|++|||||||++|+|++ ++|++++|++||.+||+.|+||+++.+++.+++.+++..|+. .+.++|.
T Consensus 1 Drg~~~GdgvFEt~~~~~g-----~~~~l~~Hl~RL~~Sa~~l~~~~~~~~~l~~~i~~~i~~~~~-------~~~~ir~ 68 (249)
T cd01559 1 DRGFAYGDGVFETMRALDG-----RLFLLDAHLARLERSARRLGIPEPDLPRLRAALESLLAANDI-------DEGRIRL 68 (249)
T ss_pred CCcccccceeEEEEEEECC-----EEccHHHHHHHHHHHHHhcCcCCCCHHHHHHHHHHHHHhCCC-------CceEEEE
Confidence 6899999999999999976 899999999999999999999988999999999999999875 4679999
Q ss_pred cccccccccccccccCCCCceEE
Q psy16306 143 TLIGTDLFEGMKAYRGVDGHIRM 165 (302)
Q Consensus 143 ~~~g~~~~~g~~~~~~~~~~i~~ 165 (302)
.++++....|..+.....+.+.+
T Consensus 69 ~v~rg~~~~~~~~~~~~~~~~~i 91 (249)
T cd01559 69 ILSRGPGGRGYAPSVCPGPALYV 91 (249)
T ss_pred EEecCCCCCCCCCCCCCCCEEEE
Confidence 98876544455444333344433
No 28
>PLN02259 branched-chain-amino-acid aminotransferase 2
Probab=99.56 E-value=4e-16 Score=148.40 Aligned_cols=111 Identities=28% Similarity=0.462 Sum_probs=98.9
Q ss_pred HHhhccccccCC-CCceeeecccccccccccccccccCCCCceEEecccchHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q psy16306 122 LIQIDQEWVPHT-TAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLPQFDPEEMIQCLNRLI 200 (302)
Q Consensus 122 lv~~Ng~~vp~~-~~~s~yirp~~~g~~~~~g~~~~~~~~~~i~~f~~~~h~~Rl~~s~~~l~~~~~~~e~l~~gi~~ii 200 (302)
-.|.|+.++|.. ...++..|.++||+++|||+++++..++.+.+|++++|++||.+||++++||.++.+++.+++..++
T Consensus 80 ~~w~~g~ivp~~~~~i~~~drgl~YGdgvFEglkayr~~~G~i~lfr~~~h~~RL~~SA~rL~lp~~~~e~~~~~i~~lv 159 (388)
T PLN02259 80 GEFTQGELSPYGNIQLSPSAGVLNYGQAIYEGTKAYRKENGKLLLFRPDHNAIRMKLGAERMLMPSPSVDQFVNAVKQTA 159 (388)
T ss_pred CeEECCEEeEchhCeeCchhhHHHhhhhhhhcEEEEECCCCeEeecCcHHHHHHHHHhHHHhCCCCcCHHHHHHHHHHHH
Confidence 357889999976 5899999999999999999999987778888999999999999999999999558999999999999
Q ss_pred HhcccccccCCCceeeecceeecccccccccc
Q psy16306 201 QIDQEWVPHTTAASLYIRPTLIGTDLFEGMKA 232 (302)
Q Consensus 201 ~~ng~~vp~~~~~s~ylr~~l~g~~~feG~r~ 232 (302)
..|+.|+|.....++|+||+++|.+...|+.+
T Consensus 160 ~~n~~~vp~~~~~~lyiRp~v~g~~~~lG~~p 191 (388)
T PLN02259 160 LANKRWVPPAGKGTLYIRPLLMGSGPILGLGP 191 (388)
T ss_pred HhccccCCCCCCceEEEEEEEEecCCccCcCC
Confidence 99999999765458899999998877777764
No 29
>cd00449 PLPDE_IV PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV). This D-amino acid superfamily, one of five classes of PLPDE, consists of branched-chain amino acid aminotransferases (BCAT), D-amino acid transferases (DAAT), and 4-amino-4-deoxychorismate lyases (ADCL). BCAT catalyzes the reversible transamination reaction between the L-branched-chain amino and alpha-keto acids. DAAT catalyzes the synthesis of D-glutamic acid and D-alanine, and ADCL converts 4-amino-4-deoxychorismate to p-aminobenzoate and pyruvate. Except for a few enzymes, i. e., Escherichia coli and Salmonella BCATs, which are homohexamers arranged as a double trimer, the class IV PLPDEs are homodimers. Homodimer formation is required for catalytic activity.
Probab=99.54 E-value=1.4e-14 Score=130.64 Aligned_cols=92 Identities=39% Similarity=0.626 Sum_probs=77.0
Q ss_pred chhhhcCCeeeeeeeeeecCCCceeecCcchhHHHHHHHHHHcCCC-CCCHHHHHHHHHHHHhhccccccCCCCceeeec
Q psy16306 63 AKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLP-QFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIR 141 (302)
Q Consensus 63 ~~~~~yG~~vfEg~r~y~~~~g~~~~Fr~~~H~~Rl~~S~~~l~~~-~~~~~~l~~~~~~lv~~Ng~~vp~~~~~s~yir 141 (302)
|+|++|||||||+||++++ ++|++++|++||.+||+.|+|+ +++.+++.+.+.+++..|+. .+.++|
T Consensus 1 drg~~~GdgvFEt~r~~~g-----~~~~l~~Hl~RL~~sa~~l~~~~~~~~~~~~~~i~~~~~~~~~-------~~~~ir 68 (256)
T cd00449 1 DRGLHYGDGVFEGLRAGKG-----RLFRLDEHLDRLNRSAKRLGLPIPYDREELREALKELVAANNG-------ASLYIR 68 (256)
T ss_pred CceeeccceEEEEEEEcCc-----EEEChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCC-------CCEEEE
Confidence 6899999999999999865 8999999999999999999999 89999999999999998775 578999
Q ss_pred ccccccccccccccccCCCCceEEe
Q psy16306 142 PTLIGTDLFEGMKAYRGVDGHIRMF 166 (302)
Q Consensus 142 p~~~g~~~~~g~~~~~~~~~~i~~f 166 (302)
..++++....|..+.....+++.++
T Consensus 69 ~~v~~g~~~~~~~~~~~~~~~~~~~ 93 (256)
T cd00449 69 PLLTRGVGGLGVAPPPSPEPTFVVF 93 (256)
T ss_pred EEEEecccccCCCCCCCCCcEEEEE
Confidence 9999876555554433334444443
No 30
>PLN02883 Branched-chain amino acid aminotransferase
Probab=99.53 E-value=2.1e-15 Score=143.20 Aligned_cols=172 Identities=23% Similarity=0.364 Sum_probs=122.7
Q ss_pred hhccccccCCC-CceeeecccccccccccccccccCCCCceEEecccchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHh
Q psy16306 124 QIDQEWVPHTT-AASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLPQFDPEEMIQCLNRLIQI 202 (302)
Q Consensus 124 ~~Ng~~vp~~~-~~s~yirp~~~g~~~~~g~~~~~~~~~~i~~f~~~~h~~Rl~~s~~~l~~~~~~~e~l~~gi~~ii~~ 202 (302)
|.++.++|... ..+.-.+.++||+++|||++++++.++.+..|+++.|++||.+||++++||.++.+++.++++.++..
T Consensus 78 w~~~~i~p~~~l~l~p~a~~l~YGdgvFEg~kayr~~dG~i~lfr~~~h~~RL~~SA~rL~lp~~~~e~~~~~i~~lv~~ 157 (384)
T PLN02883 78 FEQGYLSRYGNIELNPAAGILNYGQGLIEGMKAYRGEDGRILLFRPELNAMRMKIGAERMCMHSPSVHQFIEGVKQTVLA 157 (384)
T ss_pred ccCCeEeeCCCcccCccccHhhcceeeeeeEEEEECCCCCEeeeChhHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHh
Confidence 55666667653 67788889999999999999998888899999999999999999999999966999999999999999
Q ss_pred cccccccCCCceeeecceeeccccccccccccCCC-----Cc-cccCCchhhHHHHHHHHH-HhCCC----------CCC
Q psy16306 203 DQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVD-----GH-IRMFRPEMNMDRMNRSAL-RAGLP----------QFD 265 (302)
Q Consensus 203 ng~~vp~~~~~s~ylr~~l~g~~~feG~r~~~~~~-----~~-~~if~~~~h~~RL~~Sa~-~r~~~----------~~~ 265 (302)
|+.|||.....++|+|+++++++...|+++..... .+ ...|.......++..+.+ .|..+ ++.
T Consensus 158 n~~wvp~~~~~~lYIRp~v~~~~~~lG~~~~~~~~~~i~~~p~~~y~~~g~~~v~l~~~~~~~Ra~~~g~g~~K~~~nYa 237 (384)
T PLN02883 158 NRRWVPPPGKGSLYLRPLLFGSGASLGVAAAPEYTFLVFGSPVQNYFKEGTAALNLYVEEVIPRAYLGGTGGVKAISNYG 237 (384)
T ss_pred ccccCCCCCCceEEEEEEEEecCCccCCCCCCCeEEEEEEEecccccccCcceEEEEECccccccCCCCCcccchhhhHH
Confidence 99999976545899999999998877876432111 00 001110001233333332 22111 011
Q ss_pred H------HHHHHHHHHHHHHc-C--CccCCCCcccEEEE
Q psy16306 266 P------EEMIQCLNRLIQID-Q--EWVPHTTAASLYIR 295 (302)
Q Consensus 266 ~------~~l~~~~~e~l~~n-~--~~v~e~~~~n~yir 295 (302)
. +...++++++|.+| + ++|.|++.+|+|+.
T Consensus 238 ~~lla~~eA~~~G~de~L~Ld~~~~~~V~E~~~sNlF~v 276 (384)
T PLN02883 238 PVLEVMRRAKSRGFSDVLYLDADTGKNIEEVSAANIFLV 276 (384)
T ss_pred HHHHHHHHHHHCCCCEEEEEeCCCCCEEEEcCcEEEEEE
Confidence 1 11134566777776 3 59999999999986
No 31
>PLN03117 Branched-chain-amino-acid aminotransferase; Provisional
Probab=99.49 E-value=3.6e-15 Score=140.85 Aligned_cols=172 Identities=23% Similarity=0.351 Sum_probs=120.9
Q ss_pred HHhhccccccCC-CCceeeecccccccccccccccccCCCCceEEecccchHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q psy16306 122 LIQIDQEWVPHT-TAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLPQFDPEEMIQCLNRLI 200 (302)
Q Consensus 122 lv~~Ng~~vp~~-~~~s~yirp~~~g~~~~~g~~~~~~~~~~i~~f~~~~h~~Rl~~s~~~l~~~~~~~e~l~~gi~~ii 200 (302)
.++.||.++|.+ ...++++|+++||+++|||+++++..++.+.+|++++|++||.+||+.++|+.++.+++.+.+..++
T Consensus 44 ~~~~ng~~v~~~~a~i~~~drgl~yGDGvFEtir~y~~~~G~i~lf~l~~Hl~RL~~Sa~~L~i~~p~~~~l~~~i~~lv 123 (355)
T PLN03117 44 ESFSEGKIVPYGDISISPCAGILNYGQGLFEGLKAYRTEDGRITLFRPDQNALRMQTGADRLCMTPPSLEQFVEAVKQTV 123 (355)
T ss_pred CeEECCEEEEchhceeCcchhhhhhcceeEeeEEEEECCCCcEeeeCcHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 468999999985 6899999999999999999999965567778999999999999999999999448999999999999
Q ss_pred HhcccccccCCCceeeecceeeccccccccccccCCCCccccCC-------chhhHHHHHHHH-HHhCCCCCCH------
Q psy16306 201 QIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFR-------PEMNMDRMNRSA-LRAGLPQFDP------ 266 (302)
Q Consensus 201 ~~ng~~vp~~~~~s~ylr~~l~g~~~feG~r~~~~~~~~~~if~-------~~~h~~RL~~Sa-~~r~~~~~~~------ 266 (302)
..|+.|+|.......|+++.++|.+...|..+.. +....++. ....+.++..+. .++..++...
T Consensus 124 ~~n~~~i~~~~~~~~yir~~~~g~~~~~g~~~~~--~~~~~i~~~p~~~~~~~~~gi~l~~~~~~~r~~~~~l~~~K~~~ 201 (355)
T PLN03117 124 LANKKWVPPPGKGTLYIRPLLIGSGAVLGVAPAP--EYTFLIYASPVGNYHKASSGLNLKVDHKHRRAHSGGTGGVKSCT 201 (355)
T ss_pred HhccccccCCCCCcEEEEEEEEEecCccCcCCCC--CcEEEEEEEeccccccCCCCEEEEEcCceEeCCCCCccchhhhh
Confidence 9999888755434679999987765444443211 11011110 001233444433 2232211000
Q ss_pred HHH----------HHHHHHHHHHcC---CccCCCCcccEEEE
Q psy16306 267 EEM----------IQCLNRLIQIDQ---EWVPHTTAASLYIR 295 (302)
Q Consensus 267 ~~l----------~~~~~e~l~~n~---~~v~e~~~~n~yir 295 (302)
..+ .++++++|.+|. |+|+|++.+|+|+.
T Consensus 202 nyl~~vla~~eA~~~G~deaL~ld~~~~g~v~E~~~sNlF~v 243 (355)
T PLN03117 202 NYSPVVKSLIEAKSSGFSDVLFLDAATGKNIEELSACNIFIL 243 (355)
T ss_pred hhHHHHHHHHHHHHCCCCEEEEEeCCCCCEEEEcCcEEEEEE
Confidence 111 244566677763 59999999999986
No 32
>PRK13357 branched-chain amino acid aminotransferase; Provisional
Probab=99.42 E-value=4.4e-14 Score=133.55 Aligned_cols=170 Identities=25% Similarity=0.428 Sum_probs=119.3
Q ss_pred hhccccccCC-CCceeeecccccccccccccccccCCCCceEEecccchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHh
Q psy16306 124 QIDQEWVPHT-TAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLPQFDPEEMIQCLNRLIQI 202 (302)
Q Consensus 124 ~~Ng~~vp~~-~~~s~yirp~~~g~~~~~g~~~~~~~~~~i~~f~~~~h~~Rl~~s~~~l~~~~~~~e~l~~gi~~ii~~ 202 (302)
+.||.++|.+ +..++.+|+++||+++||+++.+++.++.+.+|++++|++||.+||+.++|++++.+++++.+..++..
T Consensus 42 ~~nG~~vp~~~a~is~~Drg~~yGDGvFEtir~~~~~~G~~~~f~l~~Hl~RL~~Sa~~L~i~~~~~~~l~~~i~~li~~ 121 (356)
T PRK13357 42 WHDARLVPYGPLELDPAATVLHYGQEIFEGLKAYRHKDGSIVLFRPDANAKRLQRSADRLLMPELPEELFLEAVKQLVKA 121 (356)
T ss_pred ccCCeEeeCCCceeCcccchhhhcceeeeeEEEEEcCCCcEeeeChHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHh
Confidence 8899999976 689999999999999999999987656777899999999999999999999977899999999999999
Q ss_pred cccccc-cCCCceeeecceeeccccccccccccCCCCccccCC--chh------hHHHHHHH-HHHhCCCC-CC-----H
Q psy16306 203 DQEWVP-HTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFR--PEM------NMDRMNRS-ALRAGLPQ-FD-----P 266 (302)
Q Consensus 203 ng~~vp-~~~~~s~ylr~~l~g~~~feG~r~~~~~~~~~~if~--~~~------h~~RL~~S-a~~r~~~~-~~-----~ 266 (302)
|+.+++ .......|+++.++++....|..+...+ ...++. ... .+.++..+ .+.|..++ .. .
T Consensus 122 n~~~~~~~~~~~~~~ir~~v~rg~~~~g~~~~~~~--~~~i~~~~~~~~~~~~~~~v~l~~~~~~~r~~~~~l~~~Kt~~ 199 (356)
T PRK13357 122 DRDWVPPYGEGASLYLRPFMIATEPFLGVKPAEEY--IFCVIASPVGAYFKGGVKPVSIWVSDEYDRAAPGGTGAAKVGG 199 (356)
T ss_pred cccccCCCCCCccEEEEEEEEccCCcccccCCCcc--EEEEEEEechhhcccCCCceEEEEcCCeEecCCCCcchhhccc
Confidence 987652 2222467999988877655555322111 111110 000 12233333 23333221 10 0
Q ss_pred HHH----------HHHHHHHHHHc---CCccCCCCcccEEEE
Q psy16306 267 EEM----------IQCLNRLIQID---QEWVPHTTAASLYIR 295 (302)
Q Consensus 267 ~~l----------~~~~~e~l~~n---~~~v~e~~~~n~yir 295 (302)
..+ .++++++|.+| +|+|+|++.+|+|+.
T Consensus 200 nyl~~vla~~eA~~~G~deaL~ld~~~~G~V~E~s~sNlF~v 241 (356)
T PRK13357 200 NYAASLLAQAEAKEKGCDQVLYLDAVEHTYIEEVGGMNFFFI 241 (356)
T ss_pred ccHHHHHHHHHHHHCCCCEEEEEcCCCCCEEEEcCcEEEEEE
Confidence 111 24566778887 589999999999985
No 33
>PRK07544 branched-chain amino acid aminotransferase; Validated
Probab=99.42 E-value=1.9e-14 Score=132.64 Aligned_cols=161 Identities=20% Similarity=0.340 Sum_probs=116.7
Q ss_pred HHhhccccccCC-CCceeeecccccccccccccccccCCCCceEEecccchHHHHHHHHHHcCCC-CCCHHHHHHHHHHH
Q psy16306 122 LIQIDQEWVPHT-TAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLP-QFDPEEMIQCLNRL 199 (302)
Q Consensus 122 lv~~Ng~~vp~~-~~~s~yirp~~~g~~~~~g~~~~~~~~~~i~~f~~~~h~~Rl~~s~~~l~~~-~~~~e~l~~gi~~i 199 (302)
.++.||.++|.. ...++.+|+++||+++||+++.+++ .+|++++|++||.+||+.++|+ +.+.+.+.+.+..+
T Consensus 10 ~~~~nG~~~~~~~~~i~~~drg~~~GdgvFEt~r~~~g-----~~~~l~~Hl~RL~~Sa~~l~i~~~~~~~~l~~~i~~~ 84 (292)
T PRK07544 10 FIWMDGELVPWRDAKVHVLTHGLHYASSVFEGERAYGG-----KIFKLREHSERLRRSAELLDFEIPYSVAEIDAAKKET 84 (292)
T ss_pred eEEECCEEEEhHHCccChhhhHhhhcceeEEeeEeeCC-----cccChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 478999999975 6899999999999999999999988 7999999999999999999999 78899999999999
Q ss_pred HHhcccccccCCCceeeecceeeccccccccccccCCCCccc--------cCCch--hhHHHHHHHHHHhCCC-CCC---
Q psy16306 200 IQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIR--------MFRPE--MNMDRMNRSALRAGLP-QFD--- 265 (302)
Q Consensus 200 i~~ng~~vp~~~~~s~ylr~~l~g~~~feG~r~~~~~~~~~~--------if~~~--~h~~RL~~Sa~~r~~~-~~~--- 265 (302)
+..|+. ...+++..++++....|....... .... .+..+ ..+.|+..+.+++..+ ..+
T Consensus 85 i~~~~~-------~~~~ir~~v~rg~~~~g~~~~~~~-~~~~v~~~~~~~~~~~~~~~~gv~l~~~~~~r~~~~~~~~~~ 156 (292)
T PRK07544 85 LAANGL-------TDAYVRPVAWRGSEMMGVSAQQNK-IHLAIAAWEWPSYFDPEAKMKGIRLDIAKWRRPDPETAPSAA 156 (292)
T ss_pred HHhcCC-------CCeEEEEEEEecCCCCCcCCCCCC-cEEEEEEeccccccCccccCCCEEEEEeEEEcCCCCCcCHhh
Confidence 988864 256888888776544444322110 0000 01101 1245565555555433 211
Q ss_pred -------HHHH------HHHHHHHHHHc-CCccCCCCcccEEEE
Q psy16306 266 -------PEEM------IQCLNRLIQID-QEWVPHTTAASLYIR 295 (302)
Q Consensus 266 -------~~~l------~~~~~e~l~~n-~~~v~e~~~~n~yir 295 (302)
..-+ .++++|+|..| +|+|+|++.+|+|+.
T Consensus 157 k~~~~yl~~vla~~~A~~~G~deal~ld~~g~V~E~~~sNlf~v 200 (292)
T PRK07544 157 KAAGLYMICTISKHAAEAKGYADALMLDYRGYVAEATGANIFFV 200 (292)
T ss_pred hhhcccHHHHHHHHHHHHcCCCeEEEECCCCCEEEcCceEEEEE
Confidence 1111 24566778888 799999999999986
No 34
>KOG0975|consensus
Probab=99.40 E-value=2.2e-13 Score=125.55 Aligned_cols=153 Identities=35% Similarity=0.574 Sum_probs=111.7
Q ss_pred ccccccccccccccccCCCCceEEecccchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhcccccccCCCceeeeccee
Q psy16306 142 PTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTL 221 (302)
Q Consensus 142 p~~~g~~~~~g~~~~~~~~~~i~~f~~~~h~~Rl~~s~~~l~~~~~~~e~l~~gi~~ii~~ng~~vp~~~~~s~ylr~~l 221 (302)
.++|+.+.|+|+++|++.++.|.+|||+.|+.|+.+||.++.||+++.+++.++|+.+++.|.+|||.....++|+||.+
T Consensus 89 vlhy~~~lfEG~KAyRt~d~~i~LFrPd~N~~Rm~~sA~r~~lP~p~~~e~ie~i~~lv~~~~~wVP~~~~~SLyirp~l 168 (379)
T KOG0975|consen 89 VLHYGQGLFEGLKAYRTEDGKIRLFRPDQNMDRMLRSAERACLPSPDVEEFIEAIKQLVLADKEWVPPPGKGSLYIRPLL 168 (379)
T ss_pred ceecchhhccccccccCCCCeEEEecchhhHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCcccCCCCCceEEEeeee
Confidence 35899999999999999999999999999999999999999999889999999999999999999998767899999999
Q ss_pred eccccccccccccCCC------CccccCCchhhHHHHHHHHHHhC-CC----------CCCHHHH------HHHHHHHHH
Q psy16306 222 IGTDLFEGMKAYRGVD------GHIRMFRPEMNMDRMNRSALRAG-LP----------QFDPEEM------IQCLNRLIQ 278 (302)
Q Consensus 222 ~g~~~feG~r~~~~~~------~~~~if~~~~h~~RL~~Sa~~r~-~~----------~~~~~~l------~~~~~e~l~ 278 (302)
.|++.-.|+..-.... +-+.+|...-.+.+|......++ .| ++.+.-+ .++++++|.
T Consensus 169 ~Gt~~~Lgv~~~~e~~l~vi~spvg~yf~~g~~~v~L~v~~~~~Ra~pgg~g~~k~~~NY~P~vl~q~eA~~~G~~dvLw 248 (379)
T KOG0975|consen 169 IGTDPVLGVSPAPEATLFVIVSPVGPYFKSGFKGVNLLVDPEFVRAWPGGTGGVKLGGNYAPNVLAQKEAKSKGASDVLW 248 (379)
T ss_pred ccCCcccccccCCcceEEEEEcccchhccccccceEEEEecceeecCCCCCCceeeccccchHHHHHHHHHhcCcceeEE
Confidence 9998777764332110 00122322122344444444333 22 2222111 244555555
Q ss_pred Hc--CCccCCCCcccEEE
Q psy16306 279 ID--QEWVPHTTAASLYI 294 (302)
Q Consensus 279 ~n--~~~v~e~~~~n~yi 294 (302)
+. +++++|.+..|+|+
T Consensus 249 L~~d~~~ItEv~tmNiF~ 266 (379)
T KOG0975|consen 249 LDGDGGYITEVGTMNIFM 266 (379)
T ss_pred EecCCCceeeccceeEEE
Confidence 55 25899999999987
No 35
>TIGR01122 ilvE_I branched-chain amino acid aminotransferase, group I. Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family more strongly similar to the DAAT family.
Probab=99.38 E-value=7.1e-14 Score=129.10 Aligned_cols=164 Identities=20% Similarity=0.303 Sum_probs=116.6
Q ss_pred hhccccccCC-CCceeeecccccccccccccccccCCCCceEEecccchHHHHHHHHHHcCCC-CCCHHHHHHHHHHHHH
Q psy16306 124 QIDQEWVPHT-TAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLP-QFDPEEMIQCLNRLIQ 201 (302)
Q Consensus 124 ~~Ng~~vp~~-~~~s~yirp~~~g~~~~~g~~~~~~~~~~i~~f~~~~h~~Rl~~s~~~l~~~-~~~~e~l~~gi~~ii~ 201 (302)
+.||.++|.. ...++..|+++||+++||+++.+++.+ ...+|++++|++||.+||+.++++ +.+.+++.+.+..++.
T Consensus 1 ~~ng~~v~~~~~~i~~~drg~~~GdgvFEt~r~~~g~~-~~~~~~l~~Hl~RL~~Sa~~l~i~~~~~~~~l~~~i~~~i~ 79 (298)
T TIGR01122 1 WMDGEFVDWEDAKVHVLTHALHYGTGVFEGIRAYDTDK-GPAIFRLKEHIQRLYDSAKIYRMEIPYSKEELMEATRETLR 79 (298)
T ss_pred CcCCEEEEhhhcccChhhhhhhccceEEEEEEEEcCCC-cceeeChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 4689999975 589999999999999999999998866 447999999999999999999999 7889999999999988
Q ss_pred hcccccccCCCceeeecceeeccccccccccccCCCCccc----cC----Cc--hhhHHHHHHHHHHhCCC-CCCH----
Q psy16306 202 IDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIR----MF----RP--EMNMDRMNRSALRAGLP-QFDP---- 266 (302)
Q Consensus 202 ~ng~~vp~~~~~s~ylr~~l~g~~~feG~r~~~~~~~~~~----if----~~--~~h~~RL~~Sa~~r~~~-~~~~---- 266 (302)
.|+. ...+++.+++++....|..+......... ++ .. ...+.|+..+.+.|..+ ..+.
T Consensus 80 ~~~~-------~~~~ir~~v~rg~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~r~~~~~~~~~~K~ 152 (298)
T TIGR01122 80 KNNL-------RSAYIRPLVFRGDGDLGLNPRAGYKPDVIIAAWPWGAYLGEEALEKGIDAKVSSWRRNAPNTIPTAAKA 152 (298)
T ss_pred hcCC-------CCEEEEEEEEEccCCCCcCCCCCCCceEEEEEeccccccCcccccCCeEEEEEEEEcCCCCCcCccchh
Confidence 8764 25789998876654445443211111100 01 00 11245565565555443 2111
Q ss_pred --HHH----------HHHHHHHHHHc-CCccCCCCcccEEEE
Q psy16306 267 --EEM----------IQCLNRLIQID-QEWVPHTTAASLYIR 295 (302)
Q Consensus 267 --~~l----------~~~~~e~l~~n-~~~v~e~~~~n~yir 295 (302)
..+ .++++++|..| +|.|+|++.+|+|+.
T Consensus 153 ~~~yl~~v~a~~~a~~~g~de~l~ld~~g~v~E~s~sNlf~v 194 (298)
T TIGR01122 153 GGNYLNSLLAKSEARRHGYDEAILLDVEGYVAEGSGENIFIV 194 (298)
T ss_pred hhhhHHHHHHHHHHHHcCCCEEEEECCCCCEEECCceEEEEE
Confidence 111 23456667777 799999999999986
No 36
>PLN02845 Branched-chain-amino-acid aminotransferase-like protein
Probab=99.32 E-value=2.3e-13 Score=127.68 Aligned_cols=117 Identities=14% Similarity=0.137 Sum_probs=90.7
Q ss_pred cCcchhHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhhccccccCC-CCceeeecccccccccccccccccCCCCceEEec
Q psy16306 89 FRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHT-TAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFR 167 (302)
Q Consensus 89 Fr~~~H~~Rl~~S~~~l~~~~~~~~~l~~~~~~lv~~Ng~~vp~~-~~~s~yirp~~~g~~~~~g~~~~~~~~~~i~~f~ 167 (302)
..-.+-++||+.-- -....+.|.+ ...++.||.|+|.+ ...++.+|+++||+++||+++.+++ .+|+
T Consensus 16 ~~~~~~~~~~~~~~-----~~~~~~~~~~--~~~~~~nG~~v~~~~a~i~~~Drgl~~GdGvFETirv~~G-----~~~~ 83 (336)
T PLN02845 16 LSAAEMIQRLQSKW-----SDAKKQNFGA--MYSSVVGGITTDPAAMVIPLDDHMVHRGHGVFDTATIRDG-----HLYE 83 (336)
T ss_pred ccHHHHHHHHHhhh-----ccccccceee--eeeEEECCEEccHHHCcccccccceeecceEEEEEEEECC-----EEcC
Confidence 34445567776521 1233444443 23568899999985 6899999999999999999999988 7999
Q ss_pred ccchHHHHHHHHHHcCCC-CCCHHHHHHHHHHHHHhcccccccCCCceeeecceeecc
Q psy16306 168 PEMNMDRMNQSALRAGLP-QFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTLIGT 224 (302)
Q Consensus 168 ~~~h~~Rl~~s~~~l~~~-~~~~e~l~~gi~~ii~~ng~~vp~~~~~s~ylr~~l~g~ 224 (302)
+++|++||.+||+.++++ +++.+++.+.+..++..|+. ...+++..+.++
T Consensus 84 le~Hl~RL~~Sa~~L~i~~p~~~~~l~~~i~~~i~~~~~-------~~~~irl~vtrG 134 (336)
T PLN02845 84 LDAHLDRFLRSAAKAKIPLPFDRATLRRILLQTVAASGC-------RNGSLRYWLSAG 134 (336)
T ss_pred HHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHhcCC-------CcEEEEEEEEeC
Confidence 999999999999999999 77899999999999888764 145666666543
No 37
>PRK06606 branched-chain amino acid aminotransferase; Validated
Probab=99.32 E-value=1.7e-13 Score=127.15 Aligned_cols=165 Identities=19% Similarity=0.304 Sum_probs=117.1
Q ss_pred HHhhccccccCC-CCceeeecccccccccccccccccCCCCceEEecccchHHHHHHHHHHcCCC-CCCHHHHHHHHHHH
Q psy16306 122 LIQIDQEWVPHT-TAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLP-QFDPEEMIQCLNRL 199 (302)
Q Consensus 122 lv~~Ng~~vp~~-~~~s~yirp~~~g~~~~~g~~~~~~~~~~i~~f~~~~h~~Rl~~s~~~l~~~-~~~~e~l~~gi~~i 199 (302)
+++.||.++|.. ...++..|+++||+++||+++.+++.++. .+|++++|++||.+||+.++++ +++.+++.+.+..+
T Consensus 8 ~~~~nG~~~~~~~~~i~~~drg~~~GdgvFEtir~~~g~~~~-~~~~l~~Hl~RL~~Sa~~l~i~~~~~~~~l~~~i~~~ 86 (306)
T PRK06606 8 YIWFNGELVPWEDAKVHVLTHALHYGTGVFEGIRAYDTPKGP-AIFRLREHTKRLFNSAKILRMEIPYSVDELMEAQREV 86 (306)
T ss_pred cEEECCEEEEhHHcccChhhhhhhhcceeEEEEEEecCCCCC-eeeChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 578899999975 58999999999999999999999885443 3899999999999999999999 77899999999999
Q ss_pred HHhcccccccCCCceeeecceeeccccccccccccCCCCccc----c----CCch--hhHHHHHHHHHHhCCC-CCC---
Q psy16306 200 IQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIR----M----FRPE--MNMDRMNRSALRAGLP-QFD--- 265 (302)
Q Consensus 200 i~~ng~~vp~~~~~s~ylr~~l~g~~~feG~r~~~~~~~~~~----i----f~~~--~h~~RL~~Sa~~r~~~-~~~--- 265 (302)
+..|+. ...++|..++++....|..+.... .... + +... ..+.|+..+.+.+..+ ...
T Consensus 87 i~~~~~-------~~~~ir~~v~rg~~~~g~~~~~~~-~~~~i~~~~~~~~~~~~~~~~gv~l~~~~~~r~~~~~~~~~~ 158 (306)
T PRK06606 87 VRKNNL-------KSAYIRPLVFVGDEGLGVRPHGLP-TDVAIAAWPWGAYLGEEALEKGIRVKVSSWTRHAPNSIPTRA 158 (306)
T ss_pred HHhcCC-------CCEEEEEEEEecCCccCcCCCCCC-ceEEEEEeccccccCcccccCCeEEEEeeEecCCCCCcCcch
Confidence 988764 267889888776544454422110 0000 0 0011 1244555555555433 210
Q ss_pred ---HHHH----------HHHHHHHHHHc-CCccCCCCcccEEEE
Q psy16306 266 ---PEEM----------IQCLNRLIQID-QEWVPHTTAASLYIR 295 (302)
Q Consensus 266 ---~~~l----------~~~~~e~l~~n-~~~v~e~~~~n~yir 295 (302)
...+ .++++|+|..| +|.|+|++.+|+|+.
T Consensus 159 K~~~nyl~~vla~~ea~~~G~de~l~l~~~g~v~E~~~sNlf~v 202 (306)
T PRK06606 159 KASGNYLNSILAKTEARRNGYDEALLLDVEGYVSEGSGENIFIV 202 (306)
T ss_pred hhhhccHHHHHHHHHHHHcCCCEEEEECCCCCEEEcCceEEEEE
Confidence 0111 24456777787 799999999999986
No 38
>COG0115 IlvE Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.28 E-value=1.2e-12 Score=120.09 Aligned_cols=162 Identities=22% Similarity=0.319 Sum_probs=113.5
Q ss_pred HHhhccccccCC-CCceeeecccccccccccccccccCCCCceEEecccchHHHHHHHHHHcCCC-CCCHHHHHHHHHHH
Q psy16306 122 LIQIDQEWVPHT-TAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLP-QFDPEEMIQCLNRL 199 (302)
Q Consensus 122 lv~~Ng~~vp~~-~~~s~yirp~~~g~~~~~g~~~~~~~~~~i~~f~~~~h~~Rl~~s~~~l~~~-~~~~e~l~~gi~~i 199 (302)
.++.||.++|.. ...++..|.++||++.|+|++.+++ .+|++++|++||.+||+.+.+| +++.+++......+
T Consensus 3 ~~~~~g~~~~~~~~~~~~~~~~~~~g~~vFE~~r~~~g-----~~~~l~~H~~RL~~Sa~~l~~~~~~~~~~~~~~~~~~ 77 (284)
T COG0115 3 KIWVNGELVPEEDAKLSVLDRGLHYGDGVFETLRAYNG-----KLFRLDEHLARLKRSAKRLGLPRPESEEEIELLIQLL 77 (284)
T ss_pred eEeECCEEccCcccccCcccceeccccceeEEEEEeCC-----cccChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 457899999976 5899999999999999999999986 7999999999999999999999 78888888887777
Q ss_pred HHhcccccccCCCceeeecceeeccccccccccccCCCCc--------cccCCch--hhHHHHHHHHHHhCCC-CCCH--
Q psy16306 200 IQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGH--------IRMFRPE--MNMDRMNRSALRAGLP-QFDP-- 266 (302)
Q Consensus 200 i~~ng~~vp~~~~~s~ylr~~l~g~~~feG~r~~~~~~~~--------~~if~~~--~h~~RL~~Sa~~r~~~-~~~~-- 266 (302)
+..++- ...+|+++++++.+...|.+. . ..+. ..++... ..+.++..+...|..+ +...
T Consensus 78 ~~~~~~------~~~~y~r~~~~~~~~~~~~~~-~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 149 (284)
T COG0115 78 LAKNNL------VPGLYIRPLVRGGGGGLGVRD-A-TEPTLIVAASPVGAYLKGGRLEKGVVLVISSPVRRAPPGPGAAK 149 (284)
T ss_pred HHhhCC------CCceEEEEEEEeecCCCCcCC-C-CccEEEEEEEecccccCcccccCCeEEEEeehhhccCCCcchhh
Confidence 766543 124899999999887777766 1 1110 1111111 1232233333233332 2111
Q ss_pred -------HHH------HHHHHHHHHHc-CCccCCCCcccEEEEE
Q psy16306 267 -------EEM------IQCLNRLIQID-QEWVPHTTAASLYIRP 296 (302)
Q Consensus 267 -------~~l------~~~~~e~l~~n-~~~v~e~~~~n~yir~ 296 (302)
..+ .++.+++|..| +|+|+|++.+|+|+.-
T Consensus 150 k~~~y~~~~~a~~~A~~~G~~eal~~~~~G~V~Eg~~sNvf~v~ 193 (284)
T COG0115 150 KTGNYLSSVLAKREAKAAGADEALLLDEDGYVTEGAGSNVFFVK 193 (284)
T ss_pred hhcccHHHHHHHHHHHHCCCCEEEEecCCCeEEEcCcceEEEEE
Confidence 111 23345666677 7999999999999854
No 39
>PRK07650 4-amino-4-deoxychorismate lyase; Provisional
Probab=99.26 E-value=1.4e-12 Score=119.71 Aligned_cols=93 Identities=20% Similarity=0.329 Sum_probs=80.0
Q ss_pred HHhhccccccCC-CCceeeecccccccccccccccccCCCCceEEecccchHHHHHHHHHHcCCC-CCCHHHHHHHHHHH
Q psy16306 122 LIQIDQEWVPHT-TAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLP-QFDPEEMIQCLNRL 199 (302)
Q Consensus 122 lv~~Ng~~vp~~-~~~s~yirp~~~g~~~~~g~~~~~~~~~~i~~f~~~~h~~Rl~~s~~~l~~~-~~~~e~l~~gi~~i 199 (302)
+++.||.++|.. +..++..|+++||+++||+++.+++ .+|++++|++||.+||+.++++ +.+.+.+.+.+..+
T Consensus 1 ~~~~nG~~~~~~~~~v~~~drg~~~GdgvFEt~r~~~g-----~~~~l~~Hl~RL~~Sa~~l~~~~~~~~~~l~~~l~~~ 75 (283)
T PRK07650 1 LIYVNGQYVEEEEARISPFDHGYLYGLGVFETFRIYNG-----HPFLLDDHYDRLNDALDTLQIEWTMTKDEVLLILKNL 75 (283)
T ss_pred CEEECCEEeEHHHCeecccccccccccEEEEEEEEECC-----EEEcHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 367899999975 6899999999999999999999988 7899999999999999999999 77899999999988
Q ss_pred HHhcccccccCCCceeeecceeecccc
Q psy16306 200 IQIDQEWVPHTTAASLYIRPTLIGTDL 226 (302)
Q Consensus 200 i~~ng~~vp~~~~~s~ylr~~l~g~~~ 226 (302)
+..++. ...++|..++++..
T Consensus 76 ~~~~~~-------~~~~iRl~v~rg~~ 95 (283)
T PRK07650 76 LEKNGL-------ENAYVRFNVSAGIG 95 (283)
T ss_pred HHhcCC-------CcEEEEEEEEeCCC
Confidence 877653 25678888766533
No 40
>cd01557 BCAT_beta_family BCAT_beta_family: Branched-chain aminotransferase catalyses the transamination of the branched-chain amino acids leusine, isoleucine and valine to their respective alpha-keto acids, alpha-ketoisocaproate, alpha-keto-beta-methylvalerate and alpha-ketoisovalerate. The enzyme requires pyridoxal 5'-phosphate (PLP) as a cofactor to catalyze the reaction. It has been found that mammals have two foms of the enzyme - mitochondrial and cytosolic forms while bacteria contain only one form of the enzyme. The mitochondrial form plays a significant role in skeletal muscle glutamine and alanine synthesis and in interorgan nitrogen metabolism.Members of this subgroup are widely distributed in all three forms of life.
Probab=99.24 E-value=1.3e-12 Score=119.60 Aligned_cols=158 Identities=30% Similarity=0.493 Sum_probs=110.3
Q ss_pred ceeeecccccccccccccccccCCCCceEEecccchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhcccccccCCCcee
Q psy16306 136 ASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASL 215 (302)
Q Consensus 136 ~s~yirp~~~g~~~~~g~~~~~~~~~~i~~f~~~~h~~Rl~~s~~~l~~~~~~~e~l~~gi~~ii~~ng~~vp~~~~~s~ 215 (302)
.++.+|+++||+++||+++.++..|+...+|++++|++||.+||+.+++++++.+++.+.+..++..|+.|.|.......
T Consensus 2 i~~~drg~~yGdgvFEtir~~~~~~g~g~~~~l~~Hl~RL~~sa~~l~i~~~~~~~l~~~i~~~i~~~~~~~~~~~~~~~ 81 (279)
T cd01557 2 LHPATHALHYGQAVFEGLKAYRTPDGKIVLFRPDENAERLNRSARRLGLPPFSVEEFIDAIKELVKLDADWVPYGGGASL 81 (279)
T ss_pred cCccccHhhcChhheeeEEEEecCCCCEeEECHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhccccCCCCCCCCE
Confidence 56789999999999999999984444447999999999999999999999778999999999999999888665433467
Q ss_pred eecceeeccccccccccccCCCCcccc----CCc----hhhHHHHHHHHHHhCCC-CCC-----HHHH----------HH
Q psy16306 216 YIRPTLIGTDLFEGMKAYRGVDGHIRM----FRP----EMNMDRMNRSALRAGLP-QFD-----PEEM----------IQ 271 (302)
Q Consensus 216 ylr~~l~g~~~feG~r~~~~~~~~~~i----f~~----~~h~~RL~~Sa~~r~~~-~~~-----~~~l----------~~ 271 (302)
+++..++++....|..+.. .....+ +.. ...+.++..+.+.+..+ ... ...+ .+
T Consensus 82 ~ir~~v~rg~~~~g~~~~~--~~~~~i~~~~~~~~~~~~~~gv~l~~~~~~r~~~~~~~~~K~~~nyl~~vla~~eA~~~ 159 (279)
T cd01557 82 YIRPFIFGTDPQLGVSPAL--EYLFAVFASPVGAYFKGGEKGVSALVSSFRRAAPGGPGAAKAGGNYAASLLAQKEAAEK 159 (279)
T ss_pred EEEEEEEeccccCCcCCCC--ccEEEEEEEEccccccCCCCCeEEEEeeEEcCCCCCCcccchhhccHHHHHHHHHHHHC
Confidence 9999998776555554321 110011 000 01234444454445433 110 0111 23
Q ss_pred HHHHHHHHc-C-CccCCCCcccEEEE
Q psy16306 272 CLNRLIQID-Q-EWVPHTTAASLYIR 295 (302)
Q Consensus 272 ~~~e~l~~n-~-~~v~e~~~~n~yir 295 (302)
+++|+|..| + |+|+|++.+|+|+.
T Consensus 160 g~de~l~ld~~~g~v~E~~~sNlf~v 185 (279)
T cd01557 160 GYDQALWLDGAHGYVAEVGTMNIFFV 185 (279)
T ss_pred CCCEEEEEcCCCCEEEEeCcEEEEEE
Confidence 456778888 6 99999999999986
No 41
>TIGR01123 ilvE_II branched-chain amino acid aminotransferase, group II. Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family less similar to the DAAT family.
Probab=99.23 E-value=1.7e-11 Score=114.14 Aligned_cols=101 Identities=37% Similarity=0.635 Sum_probs=83.6
Q ss_pred HhcccccccCC-CceeeecceeeccccccccccccCCCCccccCCchhhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Q psy16306 201 QIDQEWVPHTT-AASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQI 279 (302)
Q Consensus 201 ~~ng~~vp~~~-~~s~ylr~~l~g~~~feG~r~~~~~~~~~~if~~~~h~~RL~~Sa~~r~~~~~~~~~l~~~~~e~l~~ 279 (302)
|.||+|+|.++ ..++.+|+++||+|+|||+|+|+..+|...+|++++|+.||..|+..++++.++.+++.+.+.+++++
T Consensus 1 ~~nG~~~~~~~a~i~~~Drg~~yGdGvFEtir~~~~~~g~~~~~~l~~Hl~RL~~sa~~L~i~~~~~~~l~~~l~~~~~~ 80 (313)
T TIGR01123 1 WHNGRLTPYGPLHLDPGSTVLHYGQECFEGLKAYRCADGSIVLFRPDANAARLRRSARRLLMPELPDELFLEALRQLVKA 80 (313)
T ss_pred CCCCEEEECccCeeCcchhHHHhhhhheeeeeEEECCCCcEeeeChHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 57999999864 56789999999999999999996444544578999999999999999999965889999999999999
Q ss_pred cCCccCC-CCcccEEEEEEeeec
Q psy16306 280 DQEWVPH-TTAASLYIRPTLIGT 301 (302)
Q Consensus 280 n~~~v~e-~~~~n~yir~~~~~~ 301 (302)
|..+++. +...++||||++++.
T Consensus 81 ~~~~~~~~~~~~~~~ir~~v~~~ 103 (313)
T TIGR01123 81 NKDWVPPYGSGASLYLRPFVIGT 103 (313)
T ss_pred ccccCCCCCCCCcEEEEeEEEec
Confidence 8654442 234578999998764
No 42
>PRK13356 aminotransferase; Provisional
Probab=99.22 E-value=8e-12 Score=114.81 Aligned_cols=94 Identities=23% Similarity=0.329 Sum_probs=81.7
Q ss_pred HHHHHhcccccccCC-CceeeecceeeccccccccccccCCCCccccCCchhhHHHHHHHHHHhCCC-CCCHHHHHHHHH
Q psy16306 197 NRLIQIDQEWVPHTT-AASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLP-QFDPEEMIQCLN 274 (302)
Q Consensus 197 ~~ii~~ng~~vp~~~-~~s~ylr~~l~g~~~feG~r~~~~~~~~~~if~~~~h~~RL~~Sa~~r~~~-~~~~~~l~~~~~ 274 (302)
+.++|.||+|++.+. ..++.+|+++||+|+||++|+|+ +++|.+++|++||..|++.++++ +++.+++.+.+.
T Consensus 6 ~~~~~~nG~~~~~~~~~i~~~drg~~yGdgvFEtir~~~-----g~~~~l~~Hl~RL~~Sa~~L~i~~~~~~~~l~~~i~ 80 (286)
T PRK13356 6 NTWTFFDGEWHEGNVPIMGPADHAAWLGSTVFDGARAFE-----GVTPDLDLHCARVNRSAEALGLKPTVSAEEIEALAR 80 (286)
T ss_pred CceEEECCEEcchhhcccccccchhhhcceeEEEEEEec-----CCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 347899999998764 45789999999999999999995 48899999999999999999998 888999999999
Q ss_pred HHHHHcCCccCCCCcccEEEEEEeeec
Q psy16306 275 RLIQIDQEWVPHTTAASLYIRPTLIGT 301 (302)
Q Consensus 275 e~l~~n~~~v~e~~~~n~yir~~~~~~ 301 (302)
+++.+|+. ..+.|||++++..
T Consensus 81 ~~i~~~~~------~~~~~ir~~v~rg 101 (286)
T PRK13356 81 EGLKRFDP------DTALYIRPMYWAE 101 (286)
T ss_pred HHHHHcCC------CCcEEEEEEEEec
Confidence 99999862 3578999998853
No 43
>PRK12479 branched-chain amino acid aminotransferase; Provisional
Probab=99.16 E-value=1.7e-11 Score=113.40 Aligned_cols=91 Identities=25% Similarity=0.382 Sum_probs=80.8
Q ss_pred HHHHhcccccccCC-CceeeecceeeccccccccccccCCCCccccCCchhhHHHHHHHHHHhCCC-CCCHHHHHHHHHH
Q psy16306 198 RLIQIDQEWVPHTT-AASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLP-QFDPEEMIQCLNR 275 (302)
Q Consensus 198 ~ii~~ng~~vp~~~-~~s~ylr~~l~g~~~feG~r~~~~~~~~~~if~~~~h~~RL~~Sa~~r~~~-~~~~~~l~~~~~e 275 (302)
.++|.||+++|.+. ..++.+|+++||+++||++++++ +++|.+++|++||..|+..++++ +++.+++.+.+.+
T Consensus 4 ~~~~~nG~~~~~~~~~i~~~drg~~~GdgvFEt~r~~~-----g~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~ 78 (299)
T PRK12479 4 QYIYMNGEFVEKEKAVVSVYDHGFLYGDGVFEGIRSYG-----GNVFCLKEHVKRLYESAKSILLTIPLTVDEMEEAVLQ 78 (299)
T ss_pred cEEEECCEEeEHHHCccccccchhheeeeEEEEEEEEC-----CEecCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 35789999999854 56889999999999999999995 48999999999999999999998 8888999999999
Q ss_pred HHHHcCCccCCCCcccEEEEEEeee
Q psy16306 276 LIQIDQEWVPHTTAASLYIRPTLIG 300 (302)
Q Consensus 276 ~l~~n~~~v~e~~~~n~yir~~~~~ 300 (302)
+++.|+ ..+.|||++++.
T Consensus 79 ~i~~~~-------~~~~~ir~~v~r 96 (299)
T PRK12479 79 TLQKNE-------YADAYIRLIVSR 96 (299)
T ss_pred HHHHcC-------CCCeEEEEEEEe
Confidence 999876 457899999875
No 44
>TIGR01121 D_amino_aminoT D-amino acid aminotransferase. Specificity is broad for various D-amino acids, and differs among members of the family; the family is designated equivalog, but with this caveat attached.
Probab=99.11 E-value=6e-11 Score=108.49 Aligned_cols=88 Identities=17% Similarity=0.284 Sum_probs=75.7
Q ss_pred HHhcccccccCC-CceeeecceeeccccccccccccCCCCccccCCchhhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHH
Q psy16306 200 IQIDQEWVPHTT-AASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLP-QFDPEEMIQCLNRLI 277 (302)
Q Consensus 200 i~~ng~~vp~~~-~~s~ylr~~l~g~~~feG~r~~~~~~~~~~if~~~~h~~RL~~Sa~~r~~~-~~~~~~l~~~~~e~l 277 (302)
+|.||+++|.++ ..++.+++++||+++|||+|+|+ +.+|.+++|+.||..|++.++++ +++.+++.+.+.+++
T Consensus 2 ~~~nG~~~~~~~~~i~~~drgl~yGdgvFEtir~~~-----g~~~~l~~H~~RL~~Sa~~l~i~~~~~~~~l~~~i~~~~ 76 (276)
T TIGR01121 2 VLWNGQLVEREEAKIDIEDRGYQFGDGVYEVIRVYN-----GKLFTVNEHIDRLYASAAKIRIDIPYTKEELHQLLHELV 76 (276)
T ss_pred EEECCEEeEHHHCeecccccccccccEEEEEEEEEC-----CEEeChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 478999999864 46779999999999999999995 48999999999999999999999 888999999999999
Q ss_pred HHcCCccCCCCcccEEEEEEee
Q psy16306 278 QIDQEWVPHTTAASLYIRPTLI 299 (302)
Q Consensus 278 ~~n~~~v~e~~~~n~yir~~~~ 299 (302)
++|+ ..+.+||..++
T Consensus 77 ~~~~-------~~~~~irl~~~ 91 (276)
T TIGR01121 77 EKNN-------LNTGHVYFQVT 91 (276)
T ss_pred HhcC-------CCceEEEEEEE
Confidence 9986 34556666554
No 45
>PRK06680 D-amino acid aminotransferase; Reviewed
Probab=99.11 E-value=6.1e-11 Score=109.01 Aligned_cols=89 Identities=12% Similarity=0.197 Sum_probs=77.3
Q ss_pred HHHhcccccccCC-CceeeecceeeccccccccccccCCCCccccCCchhhHHHHHHHHHHhCCC-CCCHHHHHHHHHHH
Q psy16306 199 LIQIDQEWVPHTT-AASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLP-QFDPEEMIQCLNRL 276 (302)
Q Consensus 199 ii~~ng~~vp~~~-~~s~ylr~~l~g~~~feG~r~~~~~~~~~~if~~~~h~~RL~~Sa~~r~~~-~~~~~~l~~~~~e~ 276 (302)
++|.||+|+|.++ ..++.+|+++||+|+|||+|+++ +++|.+++|.+||..|++.++++ +++.+++.+.+.++
T Consensus 4 ~~~~nG~~~~~~~~~i~~~drg~~yGdGvFEt~r~~~-----g~~~~l~~Hl~RL~~Sa~~L~i~~~~~~~~l~~~i~~~ 78 (286)
T PRK06680 4 IAYVNGRYVNHREARVHIEDRGFQFADGIYEVCAVRD-----GKLVDLDRHLARLFRSLGEIRIAPPMTRAELVEVLREL 78 (286)
T ss_pred EEEECCEEEEHHHCcccccccccceeeEEEEEEEEEC-----CEEechHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 5789999999753 56889999999999999999995 48999999999999999999999 88899999999999
Q ss_pred HHHcCCccCCCCcccEEEEEEee
Q psy16306 277 IQIDQEWVPHTTAASLYIRPTLI 299 (302)
Q Consensus 277 l~~n~~~v~e~~~~n~yir~~~~ 299 (302)
+++|+ ..+.+||..++
T Consensus 79 ~~~~~-------~~~~~lr~~vt 94 (286)
T PRK06680 79 IRRNR-------VREGLVYLQVT 94 (286)
T ss_pred HHHcC-------CCceEEEEEEE
Confidence 99985 34556666555
No 46
>PRK09266 hypothetical protein; Provisional
Probab=99.10 E-value=6.6e-12 Score=114.19 Aligned_cols=155 Identities=14% Similarity=0.115 Sum_probs=99.5
Q ss_pred HHhhccccccCCCCceeeecccccccccccccccccCCCCceEEecccchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Q psy16306 122 LIQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLPQFDPEEMIQCLNRLIQ 201 (302)
Q Consensus 122 lv~~Ng~~vp~~~~~s~yirp~~~g~~~~~g~~~~~~~~~~i~~f~~~~h~~Rl~~s~~~l~~~~~~~e~l~~gi~~ii~ 201 (302)
+++.||.++|...-. ++++||+++||+++.+++ .++.+++|++||.+||+.+.+++++.+++.+.+..++
T Consensus 4 ~~~~nG~~~~~~~a~----~~~~~GdgvFETir~~~g-----~~~~l~~Hl~RL~~sa~~l~~~~~~~~~l~~~l~~~~- 73 (266)
T PRK09266 4 LIELNGRPATAEDLA----ALALANYGHFTSMQVRDG-----RVRGLDLHLQRLRRASRELFGAALDDDRVRAQLRAAL- 73 (266)
T ss_pred EEEECCEECCHHHhh----hHhhccceEEEEEEEECC-----EEcCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH-
Confidence 478999999985311 599999999999999988 7999999999999999988666678899999998887
Q ss_pred hcccccccCCCceeeecceeeccccccccccccCCCCccc----cCCch-hhHHHHHHHHHHhCCC-----CCCHHHH--
Q psy16306 202 IDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIR----MFRPE-MNMDRMNRSALRAGLP-----QFDPEEM-- 269 (302)
Q Consensus 202 ~ng~~vp~~~~~s~ylr~~l~g~~~feG~r~~~~~~~~~~----if~~~-~h~~RL~~Sa~~r~~~-----~~~~~~l-- 269 (302)
.++. ...++|..+++.....|..... ...... ++... ..+.++..+...+..+ ++. ..+
T Consensus 74 ~~~~-------~~~~ir~~v~r~~g~~~~~~~~-~~~~~~i~~~~~~~~~~~~v~l~~~~~~r~~~~~K~~~~l-~~vla 144 (266)
T PRK09266 74 AAGP-------ADASVRVTVFAPDFDFRNPLAD-VAPDVLVATSPPADGPAGPLRLQSVPYERELPHIKHVGTF-GQLHL 144 (266)
T ss_pred hcCC-------CcEEEEEEEEecCcccCCCCCC-CCceEEEEEecCCcCCCCCeEEEEEEecccCCCCCCCCcH-HHHHH
Confidence 3322 2568888776532222221100 000000 00000 1122233333322222 111 111
Q ss_pred -----HHHHHHHHHHc-CCccCCCCcccEEEE
Q psy16306 270 -----IQCLNRLIQID-QEWVPHTTAASLYIR 295 (302)
Q Consensus 270 -----~~~~~e~l~~n-~~~v~e~~~~n~yir 295 (302)
.++++|+|..| +|.|+|++.+|+|++
T Consensus 145 ~~~a~~~g~de~l~ln~~g~v~E~~~sNlf~v 176 (266)
T PRK09266 145 RRLAQRAGFDDALFVDPDGRVSEGATWNLGFW 176 (266)
T ss_pred HHHHHHcCCCeEEEEcCCCcEEEcCceEEEEE
Confidence 24566778888 899999999999986
No 47
>PRK08320 branched-chain amino acid aminotransferase; Reviewed
Probab=99.08 E-value=9.9e-11 Score=107.64 Aligned_cols=90 Identities=30% Similarity=0.475 Sum_probs=80.0
Q ss_pred HHHhcccccccCC-CceeeecceeeccccccccccccCCCCccccCCchhhHHHHHHHHHHhCCC-CCCHHHHHHHHHHH
Q psy16306 199 LIQIDQEWVPHTT-AASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLP-QFDPEEMIQCLNRL 276 (302)
Q Consensus 199 ii~~ng~~vp~~~-~~s~ylr~~l~g~~~feG~r~~~~~~~~~~if~~~~h~~RL~~Sa~~r~~~-~~~~~~l~~~~~e~ 276 (302)
++|.||+|++..+ ..+..+|+++||+++||++++++ +.+|.+++|+.||..|+..++++ +++.+++.+.+.++
T Consensus 4 ~~~~nG~~~~~~~~~i~~~drg~~~GdgvFEt~~v~~-----g~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~~ 78 (288)
T PRK08320 4 LIYLNGEFVPKEEAKVSVFDHGFLYGDGVFEGIRAYN-----GRVFRLKEHIDRLYDSAKAIMLEIPLSKEEMTEIVLET 78 (288)
T ss_pred EEEECCEEEEHHHCcccccchhhhhcceEEEEEEEEC-----CEeecHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHH
Confidence 5789999998753 56789999999999999999985 48999999999999999999998 88889999999999
Q ss_pred HHHcCCccCCCCcccEEEEEEeee
Q psy16306 277 IQIDQEWVPHTTAASLYIRPTLIG 300 (302)
Q Consensus 277 l~~n~~~v~e~~~~n~yir~~~~~ 300 (302)
+++|+ ..+.+||+++++
T Consensus 79 i~~~~-------~~~~~iri~v~r 95 (288)
T PRK08320 79 LRKNN-------LRDAYIRLVVSR 95 (288)
T ss_pred HHhcC-------CCCEEEEEEEEE
Confidence 99986 567899999885
No 48
>PRK12400 D-amino acid aminotransferase; Reviewed
Probab=99.08 E-value=9.9e-11 Score=107.80 Aligned_cols=91 Identities=19% Similarity=0.224 Sum_probs=78.7
Q ss_pred HHHhcccccccC--C-CceeeecceeeccccccccccccCCCCccccCCchhhHHHHHHHHHHhCCC-CCCHHHHHHHHH
Q psy16306 199 LIQIDQEWVPHT--T-AASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLP-QFDPEEMIQCLN 274 (302)
Q Consensus 199 ii~~ng~~vp~~--~-~~s~ylr~~l~g~~~feG~r~~~~~~~~~~if~~~~h~~RL~~Sa~~r~~~-~~~~~~l~~~~~ 274 (302)
++|.||+|+|.+ . ..++.+|+++||+++|||+|+++ +++|.+++|..||..|++.++++ +++.+++.+.+.
T Consensus 6 ~~~~ng~~v~~~~~~~~i~~~drgl~yGdgvFEtir~~~-----G~~~~l~~Hl~RL~~Sa~~L~i~~p~~~~~l~~~l~ 80 (290)
T PRK12400 6 FVLWNDAVIDTTKQKTYIELEERGLQFGDGVYEVIRLYK-----GNFHLLDPHITRLYRSMEEIELTLPFSKAELITLLY 80 (290)
T ss_pred EEEECCEEechHHcCceeccccchhhhcceEEEEEEEEC-----CEecccHHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 689999999987 3 46789999999999999999995 48999999999999999999999 888899999999
Q ss_pred HHHHHcCCccCCCCcccEEEEEEeee
Q psy16306 275 RLIQIDQEWVPHTTAASLYIRPTLIG 300 (302)
Q Consensus 275 e~l~~n~~~v~e~~~~n~yir~~~~~ 300 (302)
+++++|+. ..+.+||..++.
T Consensus 81 ~~~~~~~~------~~~~~iri~v~r 100 (290)
T PRK12400 81 KLIENNNF------HEDGTIYLQVSR 100 (290)
T ss_pred HHHHhcCC------CCCEEEEEEEEe
Confidence 99999851 246677777763
No 49
>cd01559 ADCL_like ADCL_like: 4-Amino-4-deoxychorismate lyase: is a member of the fold-type IV of PLP dependent enzymes that converts 4-amino-4-deoxychorismate (ADC) to p-aminobenzoate and pyruvate. Based on the information available from the crystal structure, most members of this subgroup are likely to function as dimers. The enzyme from E.Coli, the structure of which is available, is a homodimer that is folded into a small and a larger domain. The coenzyme pyridoxal 5; -phosphate resides at the interface of the two domains that is linked by a flexible loop. Members of this subgroup are found in Eukaryotes and bacteria.
Probab=99.05 E-value=5.1e-11 Score=107.27 Aligned_cols=144 Identities=22% Similarity=0.261 Sum_probs=94.6
Q ss_pred ecccccccccccccccccCCCCceEEecccchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhcccccccCCCceeeecc
Q psy16306 140 IRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRP 219 (302)
Q Consensus 140 irp~~~g~~~~~g~~~~~~~~~~i~~f~~~~h~~Rl~~s~~~l~~~~~~~e~l~~gi~~ii~~ng~~vp~~~~~s~ylr~ 219 (302)
+|+++||++.||+++.+++ .+|++++|++||.+||+.++|++++.+++++.+..++..|+. ...++|.
T Consensus 1 Drg~~~GdgvFEt~~~~~g-----~~~~l~~Hl~RL~~Sa~~l~~~~~~~~~l~~~i~~~i~~~~~-------~~~~ir~ 68 (249)
T cd01559 1 DRGFAYGDGVFETMRALDG-----RLFLLDAHLARLERSARRLGIPEPDLPRLRAALESLLAANDI-------DEGRIRL 68 (249)
T ss_pred CCcccccceeEEEEEEECC-----EEccHHHHHHHHHHHHHhcCcCCCCHHHHHHHHHHHHHhCCC-------CceEEEE
Confidence 4789999999999999988 799999999999999999999977899999999999887764 2457777
Q ss_pred eeeccccccccccccCCCCcccc----CCc--hhhHHHHHHHHHHhCCC-CC----CHHHH----------HHHHHHHHH
Q psy16306 220 TLIGTDLFEGMKAYRGVDGHIRM----FRP--EMNMDRMNRSALRAGLP-QF----DPEEM----------IQCLNRLIQ 278 (302)
Q Consensus 220 ~l~g~~~feG~r~~~~~~~~~~i----f~~--~~h~~RL~~Sa~~r~~~-~~----~~~~l----------~~~~~e~l~ 278 (302)
.+..+....|..+...+.....+ +.. ...+.++..+...+..+ .. +...+ .++++++|.
T Consensus 69 ~v~rg~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~gv~l~~~~~~~~~~~~~~~~Kt~ny~~~~~a~~~a~~~g~de~l~ 148 (249)
T cd01559 69 ILSRGPGGRGYAPSVCPGPALYVSVIPLPPAWRQDGVRLITCPVRLGEQPLLAGLKHLNYLENVLAKREARDRGADEALF 148 (249)
T ss_pred EEecCCCCCCCCCCCCCCCEEEEEeccCCHHHHhCCcEEEEcccccCCCCCCCCcchhhhHHHHHHHHHHHhcCCCEEEE
Confidence 77654332333222211111100 110 01233444444443211 10 00111 234566777
Q ss_pred Hc-CCccCCCCcccEEEE
Q psy16306 279 ID-QEWVPHTTAASLYIR 295 (302)
Q Consensus 279 ~n-~~~v~e~~~~n~yir 295 (302)
.| +|+|+|++.+|+|+.
T Consensus 149 l~~~g~v~E~~~~Nif~~ 166 (249)
T cd01559 149 LDTDGRVIEGTASNLFFV 166 (249)
T ss_pred EcCCCCEEEecceEEEEE
Confidence 77 799999999999886
No 50
>TIGR03461 pabC_Proteo aminodeoxychorismate lyase. Members of this protein family are aminodeoxychorismate lyase (ADC lyase), EC 4.1.3.38, the PabC protein of PABA biosynthesis. PABA (para-aminobenzoate) is a precursor of folate, needed for de novo purine biosynthesis. This enzyme is a pyridoxal-phosphate-binding protein in the class IV aminotransferase family (pfam01063).
Probab=99.04 E-value=5.6e-11 Score=107.71 Aligned_cols=72 Identities=19% Similarity=0.250 Sum_probs=62.0
Q ss_pred hhccccccCCCCceeeecccccccccccccccccCCCCceEEecccchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhc
Q psy16306 124 QIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLPQFDPEEMIQCLNRLIQID 203 (302)
Q Consensus 124 ~~Ng~~vp~~~~~s~yirp~~~g~~~~~g~~~~~~~~~~i~~f~~~~h~~Rl~~s~~~l~~~~~~~e~l~~gi~~ii~~n 203 (302)
|.||.. .+..++..|.++||+++||+++.+++ .+|++++|++||.+||+.++++.++.+++.+.+..++..+
T Consensus 1 ~~nG~~---~~~i~~~d~g~~~G~gvFEt~r~~~G-----~~~~l~~Hl~RL~~Sa~~l~~~~~~~~~l~~~~~~~~~~~ 72 (261)
T TIGR03461 1 WVNGVL---QTQISVSDRGLQYGDGCFTTAKVRNG-----KIELLDLHLERLQDAAARLGIPLPDWDALREEMAQLAAGY 72 (261)
T ss_pred CcCCcc---cCccCcccccccccceeEEEEEEECC-----EeccHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhC
Confidence 357763 34688999999999999999999988 7999999999999999999999447889999888887654
No 51
>cd00449 PLPDE_IV PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV). This D-amino acid superfamily, one of five classes of PLPDE, consists of branched-chain amino acid aminotransferases (BCAT), D-amino acid transferases (DAAT), and 4-amino-4-deoxychorismate lyases (ADCL). BCAT catalyzes the reversible transamination reaction between the L-branched-chain amino and alpha-keto acids. DAAT catalyzes the synthesis of D-glutamic acid and D-alanine, and ADCL converts 4-amino-4-deoxychorismate to p-aminobenzoate and pyruvate. Except for a few enzymes, i. e., Escherichia coli and Salmonella BCATs, which are homohexamers arranged as a double trimer, the class IV PLPDEs are homodimers. Homodimer formation is required for catalytic activity.
Probab=99.01 E-value=5.6e-11 Score=107.15 Aligned_cols=143 Identities=28% Similarity=0.389 Sum_probs=95.8
Q ss_pred ecccccccccccccccccCCCCceEEecccchHHHHHHHHHHcCCC-CCCHHHHHHHHHHHHHhcccccccCCCceeeec
Q psy16306 140 IRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLP-QFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIR 218 (302)
Q Consensus 140 irp~~~g~~~~~g~~~~~~~~~~i~~f~~~~h~~Rl~~s~~~l~~~-~~~~e~l~~gi~~ii~~ng~~vp~~~~~s~ylr 218 (302)
+|+++||+++||+++..++ .+|++++|++||.+||+.++++ +++.+++.+.+..++..++. ...++|
T Consensus 1 drg~~~GdgvFEt~r~~~g-----~~~~l~~Hl~RL~~sa~~l~~~~~~~~~~~~~~i~~~~~~~~~-------~~~~ir 68 (256)
T cd00449 1 DRGLHYGDGVFEGLRAGKG-----RLFRLDEHLDRLNRSAKRLGLPIPYDREELREALKELVAANNG-------ASLYIR 68 (256)
T ss_pred CceeeccceEEEEEEEcCc-----EEEChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCC-------CCEEEE
Confidence 4789999999999999888 7999999999999999999999 78999999999988877553 256788
Q ss_pred ceeeccccccccccccCCCCcccc----CC----chhhHHHHHHHHHHhC--------CC--CCCHHHH-------HHHH
Q psy16306 219 PTLIGTDLFEGMKAYRGVDGHIRM----FR----PEMNMDRMNRSALRAG--------LP--QFDPEEM-------IQCL 273 (302)
Q Consensus 219 ~~l~g~~~feG~r~~~~~~~~~~i----f~----~~~h~~RL~~Sa~~r~--------~~--~~~~~~l-------~~~~ 273 (302)
..++++....|..+.........+ +. ....+.++..+...+. ++ ++ ...+ .+++
T Consensus 69 ~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~Kt~~~-~~~~~a~~~a~~~g~ 147 (256)
T cd00449 69 PLLTRGVGGLGVAPPPSPEPTFVVFASPVGAYAKGGEKGVRLITSPDRRRAAPGGTGDAKTGGN-LNSVLAKQEAAEAGA 147 (256)
T ss_pred EEEEecccccCCCCCCCCCcEEEEEEeeccccccccCCCeEEEEeeeEEeCCCCCCccchhhCC-HHHHHHHHHHHHcCC
Confidence 888665544444322111111100 10 0112333444444332 11 11 1111 2345
Q ss_pred HHHHHHc-CCccCCCCcccEEEE
Q psy16306 274 NRLIQID-QEWVPHTTAASLYIR 295 (302)
Q Consensus 274 ~e~l~~n-~~~v~e~~~~n~yir 295 (302)
+|+|..| +|+|+|++.+|+|++
T Consensus 148 de~llld~~g~v~E~s~sNlf~~ 170 (256)
T cd00449 148 DEALLLDDNGYVTEGSASNVFIV 170 (256)
T ss_pred CEEEEECCCCcEEEcCceEEEEE
Confidence 6778887 599999999999987
No 52
>PRK06092 4-amino-4-deoxychorismate lyase; Reviewed
Probab=99.00 E-value=8.4e-11 Score=106.97 Aligned_cols=156 Identities=15% Similarity=0.141 Sum_probs=94.9
Q ss_pred HhhccccccCCCCceeeecccccccccccccccccCCCCceEEecccchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHh
Q psy16306 123 IQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLPQFDPEEMIQCLNRLIQI 202 (302)
Q Consensus 123 v~~Ng~~vp~~~~~s~yirp~~~g~~~~~g~~~~~~~~~~i~~f~~~~h~~Rl~~s~~~l~~~~~~~e~l~~gi~~ii~~ 202 (302)
++.||.+ .+..++.+|.++||+++||+++.+++ .++.+++|++||.+||+.++++..+.+.+.+.+...+
T Consensus 2 ~~~nG~~---~~~i~~~d~g~~~GdgvFEtir~~~g-----~~~~l~~Hl~RL~~Sa~~l~~~~~~~~~~~~~l~~~~-- 71 (268)
T PRK06092 2 FWINGQP---QESLSVSDRSTQYGDGCFTTARVRDG-----QVSLLSRHLQRLQDACERLAIPLDDWAQLEQEMKQLA-- 71 (268)
T ss_pred EEECCcC---cCccCccccccccccceeeEEEEECC-----eeccHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH--
Confidence 4567875 34688999999999999999999988 7999999999999999999999445567777666655
Q ss_pred cccccccCCCceeeecceeeccccccccccccCCCCccc----cCC---ch--hhHHHHHHHHHHhCCCCCC-----HHH
Q psy16306 203 DQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIR----MFR---PE--MNMDRMNRSALRAGLPQFD-----PEE 268 (302)
Q Consensus 203 ng~~vp~~~~~s~ylr~~l~g~~~feG~r~~~~~~~~~~----if~---~~--~h~~RL~~Sa~~r~~~~~~-----~~~ 268 (302)
++. ...+++..+..+....|..+.....+... ++. .+ .++.++..+.+++..+++. ...
T Consensus 72 ~~~-------~~~~iri~v~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~gv~l~~~~~~~~~~~~~~~~Kt~ny 144 (268)
T PRK06092 72 AEL-------ENGVLKVIISRGSGGRGYSPAGCAAPTRILSVSPYPAHYSRWREQGITLALCPTRLGRNPLLAGIKHLNR 144 (268)
T ss_pred hhC-------CCeEEEEEEEccCCCCCCCCCCCCCCeEEEEeccCCccChhHhhCCEEEEEeccccCCCCCccCcchhhh
Confidence 111 13455655544332223222111111000 000 00 1223333333332211110 011
Q ss_pred H----------HHHHHHHHHHc-CCccCCCCcccEEEE
Q psy16306 269 M----------IQCLNRLIQID-QEWVPHTTAASLYIR 295 (302)
Q Consensus 269 l----------~~~~~e~l~~n-~~~v~e~~~~n~yir 295 (302)
+ .++++++|..| +|+|+|++.+|+|+.
T Consensus 145 ~~~~~a~~~A~~~g~de~l~l~~~g~v~E~s~sNif~v 182 (268)
T PRK06092 145 LEQVLIRAELEQTEADEALVLDSEGWVIECCAANLFWR 182 (268)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCEEEccceEEEEE
Confidence 1 24456778888 899999999999986
No 53
>cd01558 D-AAT_like D-Alanine aminotransferase (D-AAT_like): D-amino acid aminotransferase catalyzes transamination between D-amino acids and their respective alpha-keto acids. It plays a major role in the synthesis of bacterial cell wall components like D-alanine and D-glutamate in addition to other D-amino acids. The enzyme like other members of this superfamily requires PLP as a cofactor. Members of this subgroup are found in all three forms of life.
Probab=98.96 E-value=7.3e-10 Score=100.86 Aligned_cols=76 Identities=24% Similarity=0.469 Sum_probs=68.3
Q ss_pred HhcccccccCC-CceeeecceeeccccccccccccCCCCccccCCchhhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHH
Q psy16306 201 QIDQEWVPHTT-AASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLP-QFDPEEMIQCLNRLIQ 278 (302)
Q Consensus 201 ~~ng~~vp~~~-~~s~ylr~~l~g~~~feG~r~~~~~~~~~~if~~~~h~~RL~~Sa~~r~~~-~~~~~~l~~~~~e~l~ 278 (302)
|.||+++|.+. ..++.+++++||+++|||+|+++ +.+|.+++|+.||..|++.++++ +++.+++.+.+.++++
T Consensus 1 ~~nG~~~~~~~~~i~~~d~g~~~G~gvFEt~r~~~-----g~~~~l~~Hl~RL~~Sa~~l~~~~~~~~~~l~~~i~~~~~ 75 (270)
T cd01558 1 YLNGEYVPREEAKVSVFDRGFLFGDGVYEVIRVYN-----GKPFALDEHLDRLYRSAKELRIDIPYTREELKELIRELVA 75 (270)
T ss_pred CcCCeEeEHHHCccccccchhcccceEEEEEEEEC-----CEEecHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 57999998753 46789999999999999999995 48999999999999999999999 8888999999999999
Q ss_pred HcC
Q psy16306 279 IDQ 281 (302)
Q Consensus 279 ~n~ 281 (302)
.|.
T Consensus 76 ~~~ 78 (270)
T cd01558 76 KNE 78 (270)
T ss_pred HcC
Confidence 974
No 54
>PRK07849 4-amino-4-deoxychorismate lyase; Provisional
Probab=98.91 E-value=1e-09 Score=101.20 Aligned_cols=91 Identities=16% Similarity=0.148 Sum_probs=77.1
Q ss_pred HHHhcc-----cccccCC-CceeeecceeeccccccccccccCCCCccccCCchhhHHHHHHHHHHhCCCCCCHHHHHHH
Q psy16306 199 LIQIDQ-----EWVPHTT-AASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQC 272 (302)
Q Consensus 199 ii~~ng-----~~vp~~~-~~s~ylr~~l~g~~~feG~r~~~~~~~~~~if~~~~h~~RL~~Sa~~r~~~~~~~~~l~~~ 272 (302)
++|.|| +|+|+++ ..+..+|+++||+++||++++++ ++++.+++|++||..|++.++++..+.+++.++
T Consensus 8 ~~~~ng~~~~~~~~~~~~a~i~~~drg~~~GdgvFEt~rv~~-----g~i~~l~~Hl~RL~~Sa~~l~i~~~~~~~l~~~ 82 (292)
T PRK07849 8 VVTLDPYGGSERVHDPSAPLLHADDLAAVRGDGVFETLLVRD-----GRPCNLEAHLERLARSAALLDLPEPDLDRWRRA 82 (292)
T ss_pred EEEECCCCccceEechHHCCccchhcchhccceEEEEEEEEC-----CEECCHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 789999 9999865 56789999999999999999995 488999999999999999999993377889999
Q ss_pred HHHHHHHcC-CccCCCCcccEEEEEEeee
Q psy16306 273 LNRLIQIDQ-EWVPHTTAASLYIRPTLIG 300 (302)
Q Consensus 273 ~~e~l~~n~-~~v~e~~~~n~yir~~~~~ 300 (302)
+.+++..|. + ..+.+||++++.
T Consensus 83 i~~~v~~~~~~------~~~~~iRl~v~~ 105 (292)
T PRK07849 83 VELAIEEWRAP------EDEAALRLVYSR 105 (292)
T ss_pred HHHHHHHhcCC------CCCeEEEEEEeC
Confidence 999998872 1 346788877653
No 55
>PRK07546 hypothetical protein; Provisional
Probab=98.35 E-value=7.6e-07 Score=78.14 Aligned_cols=65 Identities=28% Similarity=0.351 Sum_probs=51.6
Q ss_pred Ceeeeeeeee-ecCCCceeecCcchhHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhhccccccCCCCceeeecccccccc
Q psy16306 70 VELFEGMKAY-RGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTD 148 (302)
Q Consensus 70 ~~vfEg~r~y-~~~~g~~~~Fr~~~H~~Rl~~S~~~l~~~~~~~~~l~~~~~~lv~~Ng~~vp~~~~~s~yirp~~~g~~ 148 (302)
-++||++|++ +| +++.+++|++||.+||+.+++| ++.+++.+.+.+++..++ ...++|.++..++
T Consensus 4 ~~lfETi~~~~~G-----~~~~l~~Hl~RL~~sa~~l~~~-~~~~~l~~~l~~~~~~~~--------~~~~vrl~~~~~g 69 (209)
T PRK07546 4 FELIETLRWEPGA-----GFPRLDRHLARLERSARALGFP-CDPAAVRAKLAEAVAGAQ--------GPLRLRLTLARDG 69 (209)
T ss_pred ccEEEEEEEeCCC-----CcccHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHhhccC--------CCeEEEEEEcCCC
Confidence 3699999999 65 8999999999999999999998 346789888988887643 3356666655443
No 56
>PRK07101 hypothetical protein; Provisional
Probab=97.92 E-value=1.1e-05 Score=69.69 Aligned_cols=47 Identities=26% Similarity=0.265 Sum_probs=40.9
Q ss_pred eeeeeeeeeecCCCceeecCcchhHHHHHHHHHHcCCC--CCCHHHHHHHHHHH
Q psy16306 71 ELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLP--QFDPEEMIQCLNRL 122 (302)
Q Consensus 71 ~vfEg~r~y~~~~g~~~~Fr~~~H~~Rl~~S~~~l~~~--~~~~~~l~~~~~~l 122 (302)
++||+||+++| +++++++|++||.+||+.+++. +++.+++.+.+.++
T Consensus 4 ~l~ETir~~~g-----~~~~l~~Hl~RL~~Sa~~l~~~~~~~~~~~~~~~~~~~ 52 (187)
T PRK07101 4 PLFETIAIEDG-----EIQNLSYHQQRYERTLAEFYGKEAPFDLAEIIQPPTEL 52 (187)
T ss_pred cceEEEeeeCC-----eeccHHHHHHHHHHHHHHHcccCCcccHHHHhhchhhh
Confidence 59999999965 7999999999999999999885 58888888877554
No 57
>PF01063 Aminotran_4: Aminotransferase class IV; InterPro: IPR001544 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-IV, currently consists of proteins of about 270 to 415 amino-acid residues that share a few regions of sequence similarity. Surprisingly, the best conserved region does not include the lysine residue to which the pyridoxal-phosphate group is known to be attached, in ilvE, but is located some 40 residues at the C terminus side of the pyridoxal-phosphate-lysine. The D-amino acid transferases (D-AAT), which are among the members of this entry, are required by bacteria to catalyse the synthesis of D-glutamic acid and D-alanine, which are essential constituents of bacterial cell wall and are the building block for other D-amino acids. Despite the difference in the structure of the substrates, D-AATs and L-ATTs have strong similarity [, ]. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1EKV_A 2HGX_A 1EKP_A 1KTA_B 1KT8_B 2A1H_B 2HDK_A 2HGW_B 1EKF_B 2HG8_A ....
Probab=97.86 E-value=2.1e-05 Score=69.56 Aligned_cols=59 Identities=24% Similarity=0.329 Sum_probs=49.8
Q ss_pred cCcchhHHHHHHHHHHcCCC-CCCHHHHHHHHHHHHhhccccccCCCCceeeecccccccccccccc
Q psy16306 89 FRPEMNMDRMNRSALRAGLP-QFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTDLFEGMK 154 (302)
Q Consensus 89 Fr~~~H~~Rl~~S~~~l~~~-~~~~~~l~~~~~~lv~~Ng~~vp~~~~~s~yirp~~~g~~~~~g~~ 154 (302)
|++++|++||.+||+.+ ++ +++.+++.+++.+++..++. ..+.|+|+.++++....+..
T Consensus 1 f~l~~Hl~Rl~~S~~~l-~~~~~~~~~l~~~i~~~~~~~~~------~~~~~ir~~v~~g~~~~~~~ 60 (231)
T PF01063_consen 1 FFLDEHLERLRRSARAL-IGLPFSREELREIIQELLEANPD------QGEGYIRITVTRGGGPLGGS 60 (231)
T ss_dssp ETHHHHHHHHHHHHHHT-TTHSSHHHHHHHHHHHHHHHTTS------SSSEEEEEEEEETSSSSSSS
T ss_pred CCHHHHHHHHHHHHHHH-ccCCcCHHHHHHHHHHHHHHcCC------CCCcEEEEEEEcCCCCcCcc
Confidence 79999999999999999 77 89999999999999999872 14559999999876544333
No 58
>PRK07546 hypothetical protein; Provisional
Probab=97.68 E-value=3.4e-05 Score=67.68 Aligned_cols=49 Identities=22% Similarity=0.321 Sum_probs=40.3
Q ss_pred ccccccccc-cCCCCceEEecccchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHh
Q psy16306 148 DLFEGMKAY-RGVDGHIRMFRPEMNMDRMNQSALRAGLPQFDPEEMIQCLNRLIQI 202 (302)
Q Consensus 148 ~~~~g~~~~-~~~~~~i~~f~~~~h~~Rl~~s~~~l~~~~~~~e~l~~gi~~ii~~ 202 (302)
+.||+++.. ++ .++.++.|++||.+||+.++++. +.+++.+.+..++..
T Consensus 5 ~lfETi~~~~~G-----~~~~l~~Hl~RL~~sa~~l~~~~-~~~~l~~~l~~~~~~ 54 (209)
T PRK07546 5 ELIETLRWEPGA-----GFPRLDRHLARLERSARALGFPC-DPAAVRAKLAEAVAG 54 (209)
T ss_pred cEEEEEEEeCCC-----CcccHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHhhc
Confidence 468899988 77 68899999999999999999983 356788878777654
No 59
>PF01063 Aminotran_4: Aminotransferase class IV; InterPro: IPR001544 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-IV, currently consists of proteins of about 270 to 415 amino-acid residues that share a few regions of sequence similarity. Surprisingly, the best conserved region does not include the lysine residue to which the pyridoxal-phosphate group is known to be attached, in ilvE, but is located some 40 residues at the C terminus side of the pyridoxal-phosphate-lysine. The D-amino acid transferases (D-AAT), which are among the members of this entry, are required by bacteria to catalyse the synthesis of D-glutamic acid and D-alanine, which are essential constituents of bacterial cell wall and are the building block for other D-amino acids. Despite the difference in the structure of the substrates, D-AATs and L-ATTs have strong similarity [, ]. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1EKV_A 2HGX_A 1EKP_A 1KTA_B 1KT8_B 2A1H_B 2HDK_A 2HGW_B 1EKF_B 2HG8_A ....
Probab=97.26 E-value=0.00023 Score=62.79 Aligned_cols=56 Identities=21% Similarity=0.309 Sum_probs=44.7
Q ss_pred ecccchHHHHHHHHHHcCCC-CCCHHHHHHHHHHHHHhcccccccCCCceeeecceeecccccc
Q psy16306 166 FRPEMNMDRMNQSALRAGLP-QFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTDLFE 228 (302)
Q Consensus 166 f~~~~h~~Rl~~s~~~l~~~-~~~~e~l~~gi~~ii~~ng~~vp~~~~~s~ylr~~l~g~~~fe 228 (302)
|++++|++||.+||+.+ +. +.+.+++++.+...+..++. ....++|..+.++....
T Consensus 1 f~l~~Hl~Rl~~S~~~l-~~~~~~~~~l~~~i~~~~~~~~~------~~~~~ir~~v~~g~~~~ 57 (231)
T PF01063_consen 1 FFLDEHLERLRRSARAL-IGLPFSREELREIIQELLEANPD------QGEGYIRITVTRGGGPL 57 (231)
T ss_dssp ETHHHHHHHHHHHHHHT-TTHSSHHHHHHHHHHHHHHHTTS------SSSEEEEEEEEETSSSS
T ss_pred CCHHHHHHHHHHHHHHH-ccCCcCHHHHHHHHHHHHHHcCC------CCCcEEEEEEEcCCCCc
Confidence 67899999999999999 66 78999999999999987761 12448888887665433
No 60
>PRK07101 hypothetical protein; Provisional
Probab=97.17 E-value=0.00021 Score=61.72 Aligned_cols=47 Identities=23% Similarity=0.241 Sum_probs=37.7
Q ss_pred ccccccccccCCCCceEEecccchHHHHHHHHHHcCCC--CCCHHHHHHHHHHH
Q psy16306 148 DLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLP--QFDPEEMIQCLNRL 199 (302)
Q Consensus 148 ~~~~g~~~~~~~~~~i~~f~~~~h~~Rl~~s~~~l~~~--~~~~e~l~~gi~~i 199 (302)
+.+|+++.+++ .+++++.|++||.+||+.+.+. +.+.+++.+.+..+
T Consensus 4 ~l~ETir~~~g-----~~~~l~~Hl~RL~~Sa~~l~~~~~~~~~~~~~~~~~~~ 52 (187)
T PRK07101 4 PLFETIAIEDG-----EIQNLSYHQQRYERTLAEFYGKEAPFDLAEIIQPPTEL 52 (187)
T ss_pred cceEEEeeeCC-----eeccHHHHHHHHHHHHHHHcccCCcccHHHHhhchhhh
Confidence 36889998877 6899999999999999998774 46777777666543
No 61
>KOG3442|consensus
Probab=41.30 E-value=49 Score=26.50 Aligned_cols=42 Identities=12% Similarity=0.361 Sum_probs=36.0
Q ss_pred HHHHHHHHcCCC-CCCHHHHHHHHHHHHhhccccccCCCCceeeecc
Q psy16306 97 RMNRSALRAGLP-QFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRP 142 (302)
Q Consensus 97 Rl~~S~~~l~~~-~~~~~~l~~~~~~lv~~Ng~~vp~~~~~s~yirp 142 (302)
=|..++..|++. +.+.+++..--..|...|.. ..+.|.|++.
T Consensus 57 TlqEa~qILnV~~~ln~eei~k~yehLFevNdk----skGGSFYLQS 99 (132)
T KOG3442|consen 57 TLQEAQQILNVKEPLNREEIEKRYEHLFEVNDK----SKGGSFYLQS 99 (132)
T ss_pred cHHHHhhHhCCCCCCCHHHHHHHHHHHHhccCc----ccCcceeehH
Confidence 378899999998 89999999999999999986 2478999984
No 62
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=36.63 E-value=39 Score=27.21 Aligned_cols=42 Identities=12% Similarity=0.331 Sum_probs=29.4
Q ss_pred HHHHHHHHcCCC-CCCHHHHHHHHHHHHhhccccccCCCCceeeecc
Q psy16306 97 RMNRSALRAGLP-QFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRP 142 (302)
Q Consensus 97 Rl~~S~~~l~~~-~~~~~~l~~~~~~lv~~Ng~~vp~~~~~s~yirp 142 (302)
=|..++..|+++ ..+.+++.+--..|...|.. ..+.|.|++-
T Consensus 56 tl~EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~----~kGGSfYLQS 98 (127)
T PF03656_consen 56 TLDEARQILNVKEELSREEIQKRYKHLFKANDP----SKGGSFYLQS 98 (127)
T ss_dssp -HHHHHHHHT--G--SHHHHHHHHHHHHHHT-C----CCTS-HHHHH
T ss_pred CHHHHHHHcCCCCccCHHHHHHHHHHHHhccCC----CcCCCHHHHH
Confidence 356888999999 69999999999999999985 2367888873
No 63
>COG5475 Uncharacterized small protein [Function unknown]
Probab=27.23 E-value=70 Score=21.91 Aligned_cols=28 Identities=11% Similarity=0.175 Sum_probs=19.0
Q ss_pred cccCCceEEEEEeCC----CcceeCCeeccCC
Q psy16306 28 TVFTDHMLQIEFNEQ----LGGWQAPRVSPLK 55 (302)
Q Consensus 28 ~~~~~~m~~~~~~~~----~~~w~~g~~~~~~ 55 (302)
...+|.|+.|.|-++ +.+++..+++|..
T Consensus 24 ~~ss~Gmy~C~Wf~g~g~~~~~F~ed~Lvp~~ 55 (60)
T COG5475 24 GYSSDGMYECRWFDGYGVKREAFHEDELVPGE 55 (60)
T ss_pred ccccCCeEEEEEecCCCcccccccccceeccc
Confidence 456789999999875 2356666666643
No 64
>KOG4513|consensus
Probab=21.28 E-value=2.4e+02 Score=27.23 Aligned_cols=88 Identities=20% Similarity=0.232 Sum_probs=54.8
Q ss_pred CceeecCcchhHHHHHHHHHHcCCCCCCHHHHH---HHHHHHHhhccccccCCCCceeeecccccccccccccccccCCC
Q psy16306 84 GHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMI---QCLNRLIQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVD 160 (302)
Q Consensus 84 g~~~~Fr~~~H~~Rl~~S~~~l~~~~~~~~~l~---~~~~~lv~~Ng~~vp~~~~~s~yirp~~~g~~~~~g~~~~~~~~ 160 (302)
|++++..-+..++|.+++-+.+-+-. ...++. ++++.+-+..|. -+-|++|++.-+....-.. +|
T Consensus 199 GR~Y~mDR~N~werv~~~~~amv~ge-~~~e~g~~ve~v~~~rye~g~-------~De~L~p~vi~ge~Gr~~~----~D 266 (531)
T KOG4513|consen 199 GRMYVMDRENDWERVKRGWDAMVLGE-APHEFGGAVEAVKTLRYEPGA-------NDEYLPPFVIVGERGRAVG----PD 266 (531)
T ss_pred ceEEEeeccccHHHhhhhhhhhhhcc-CchhhcchHHHHhhhhhCCCC-------CccccCCeEEECCCCcccC----CC
Confidence 54555555788999999988776541 233443 444444444443 5679999998765433222 24
Q ss_pred CceEEecccchHHHHHHHHHHcCCC
Q psy16306 161 GHIRMFRPEMNMDRMNQSALRAGLP 185 (302)
Q Consensus 161 ~~i~~f~~~~h~~Rl~~s~~~l~~~ 185 (302)
.+|+.|- --..|+.+.++.+.+.
T Consensus 267 dtiifFn--fRADRMr~ia~a~~~~ 289 (531)
T KOG4513|consen 267 DTIIFFN--FRADRMRMIAKALEYN 289 (531)
T ss_pred CeEEEEe--cchHHHHHHHHHhccc
Confidence 5655543 3467888888888766
Done!