RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16306
(302 letters)
>gnl|CDD|237363 PRK13357, PRK13357, branched-chain amino acid aminotransferase;
Provisional.
Length = 356
Score = 174 bits (445), Expect = 2e-52
Identities = 63/154 (40%), Positives = 90/154 (58%), Gaps = 5/154 (3%)
Query: 3 QEIHVQLCSPEQLQPKPEVSQLKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLHPA 62
+ S E+ L FG VFTDHM+ I++ + G W R+ P L L PA
Sbjct: 3 VTLKPNPTSDEKRAIDWA--NLGFGYVFTDHMVVIDYKD--GKWHDARLVPYGPLELDPA 58
Query: 63 AKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRL 122
A VLHY E+FEG+KAYR DG I +FRP+ N R+ RSA R +P+ E ++ + +L
Sbjct: 59 ATVLHYGQEIFEGLKAYRHKDGSIVLFRPDANAKRLQRSADRLLMPELPEELFLEAVKQL 118
Query: 123 IQIDQEWV-PHTTAASLYIRPTLIGTDLFEGMKA 155
++ D++WV P+ ASLY+RP +I T+ F G+K
Sbjct: 119 VKADRDWVPPYGEGASLYLRPFMIATEPFLGVKP 152
Score = 114 bits (288), Expect = 2e-29
Identities = 36/84 (42%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Query: 150 FEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLPQFDPEEMIQCLNRLIQIDQEWV-P 208
FEG+KAYR DG I +FRP+ N R+ +SA R +P+ E ++ + +L++ D++WV P
Sbjct: 69 FEGLKAYRHKDGSIVLFRPDANAKRLQRSADRLLMPELPEELFLEAVKQLVKADRDWVPP 128
Query: 209 HTTAASLYIRPTLIGTDLFEGMKA 232
+ ASLY+RP +I T+ F G+K
Sbjct: 129 YGEGASLYLRPFMIATEPFLGVKP 152
Score = 112 bits (283), Expect = 8e-29
Identities = 34/77 (44%), Positives = 52/77 (67%), Gaps = 1/77 (1%)
Query: 227 FEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWV-P 285
FEG+KAYR DG I +FRP+ N R+ RSA R +P+ E ++ + +L++ D++WV P
Sbjct: 69 FEGLKAYRHKDGSIVLFRPDANAKRLQRSADRLLMPELPEELFLEAVKQLVKADRDWVPP 128
Query: 286 HTTAASLYIRPTLIGTD 302
+ ASLY+RP +I T+
Sbjct: 129 YGEGASLYLRPFMIATE 145
>gnl|CDD|238798 cd01557, BCAT_beta_family, BCAT_beta_family: Branched-chain
aminotransferase catalyses the transamination of the
branched-chain amino acids leusine, isoleucine and
valine to their respective alpha-keto acids,
alpha-ketoisocaproate, alpha-keto-beta-methylvalerate
and alpha-ketoisovalerate. The enzyme requires pyridoxal
5'-phosphate (PLP) as a cofactor to catalyze the
reaction. It has been found that mammals have two foms
of the enzyme - mitochondrial and cytosolic forms while
bacteria contain only one form of the enzyme. The
mitochondrial form plays a significant role in skeletal
muscle glutamine and alanine synthesis and in interorgan
nitrogen metabolism.Members of this subgroup are widely
distributed in all three forms of life.
Length = 279
Score = 149 bits (379), Expect = 2e-43
Identities = 50/98 (51%), Positives = 65/98 (66%)
Query: 58 TLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQ 117
+LHPA LHY +FEG+KAYR DG I +FRP+ N +R+NRSA R GLP F EE I
Sbjct: 1 SLHPATHALHYGQAVFEGLKAYRTPDGKIVLFRPDENAERLNRSARRLGLPPFSVEEFID 60
Query: 118 CLNRLIQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKA 155
+ L+++D +WVP+ ASLYIRP + GTD G+
Sbjct: 61 AIKELVKLDADWVPYGGGASLYIRPFIFGTDPQLGVSP 98
Score = 128 bits (325), Expect = 2e-35
Identities = 43/87 (49%), Positives = 58/87 (66%)
Query: 146 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLPQFDPEEMIQCLNRLIQIDQE 205
G +FEG+KAYR DG I +FRP+ N +R+N+SA R GLP F EE I + L+++D +
Sbjct: 12 GQAVFEGLKAYRTPDGKIVLFRPDENAERLNRSARRLGLPPFSVEEFIDAIKELVKLDAD 71
Query: 206 WVPHTTAASLYIRPTLIGTDLFEGMKA 232
WVP+ ASLYIRP + GTD G+
Sbjct: 72 WVPYGGGASLYIRPFIFGTDPQLGVSP 98
Score = 127 bits (322), Expect = 4e-35
Identities = 43/80 (53%), Positives = 56/80 (70%)
Query: 223 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQE 282
G +FEG+KAYR DG I +FRP+ N +R+NRSA R GLP F EE I + L+++D +
Sbjct: 12 GQAVFEGLKAYRTPDGKIVLFRPDENAERLNRSARRLGLPPFSVEEFIDAIKELVKLDAD 71
Query: 283 WVPHTTAASLYIRPTLIGTD 302
WVP+ ASLYIRP + GTD
Sbjct: 72 WVPYGGGASLYIRPFIFGTD 91
>gnl|CDD|233278 TIGR01123, ilvE_II, branched-chain amino acid aminotransferase,
group II. Among the class IV aminotransferases are two
phylogenetically separable groups of branched-chain
amino acid aminotransferase (IlvE). The last common
ancestor of the two lineages appears also to have given
rise to a family of D-amino acid aminotransferases
(DAAT). This model represents the IlvE family less
similar to the DAAT family [Amino acid biosynthesis,
Pyruvate family].
Length = 313
Score = 121 bits (306), Expect = 2e-32
Identities = 47/111 (42%), Positives = 71/111 (63%), Gaps = 1/111 (0%)
Query: 46 WQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRA 105
W R++P L L P + VLHY E FEG+KAYR DG I +FRP+ N R+ RSA R
Sbjct: 1 WHNGRLTPYGPLHLDPGSTVLHYGQECFEGLKAYRCADGSIVLFRPDANAARLRRSARRL 60
Query: 106 GLPQFDPEEMIQCLNRLIQIDQEWVP-HTTAASLYIRPTLIGTDLFEGMKA 155
+P+ E ++ L +L++ +++WVP + + ASLY+RP +IGT+ G++
Sbjct: 61 LMPELPDELFLEALRQLVKANKDWVPPYGSGASLYLRPFVIGTEPNLGVRP 111
Score = 93.3 bits (232), Expect = 5e-22
Identities = 36/88 (40%), Positives = 59/88 (67%), Gaps = 1/88 (1%)
Query: 146 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLPQFDPEEMIQCLNRLIQIDQE 205
G + FEG+KAYR DG I +FRP+ N R+ +SA R +P+ E ++ L +L++ +++
Sbjct: 24 GQECFEGLKAYRCADGSIVLFRPDANAARLRRSARRLLMPELPDELFLEALRQLVKANKD 83
Query: 206 WVP-HTTAASLYIRPTLIGTDLFEGMKA 232
WVP + + ASLY+RP +IGT+ G++
Sbjct: 84 WVPPYGSGASLYLRPFVIGTEPNLGVRP 111
Score = 92.9 bits (231), Expect = 8e-22
Identities = 36/81 (44%), Positives = 56/81 (69%), Gaps = 1/81 (1%)
Query: 223 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQE 282
G + FEG+KAYR DG I +FRP+ N R+ RSA R +P+ E ++ L +L++ +++
Sbjct: 24 GQECFEGLKAYRCADGSIVLFRPDANAARLRRSARRLLMPELPDELFLEALRQLVKANKD 83
Query: 283 WVP-HTTAASLYIRPTLIGTD 302
WVP + + ASLY+RP +IGT+
Sbjct: 84 WVPPYGSGASLYLRPFVIGTE 104
>gnl|CDD|215418 PLN02782, PLN02782, Branched-chain amino acid aminotransferase.
Length = 403
Score = 94.5 bits (235), Expect = 5e-22
Identities = 48/124 (38%), Positives = 69/124 (55%), Gaps = 1/124 (0%)
Query: 24 LKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVD 83
L FG V TD+M ++ N G + + + L P+A VL+Y LFEG+KAYR D
Sbjct: 75 LGFGLVPTDYMYIMKCNRD-GEFSKGELQRFGNIELSPSAGVLNYGQGLFEGLKAYRKED 133
Query: 84 GHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPT 143
G+I +FRPE N RM A R +P E+ ++ + + ++ WVP SLYIRP
Sbjct: 134 GNILLFRPEENAIRMRNGAERMCMPAPTVEQFVEAVKETVLANKRWVPPPGKGSLYIRPL 193
Query: 144 LIGT 147
L+G+
Sbjct: 194 LMGS 197
Score = 78.7 bits (194), Expect = 2e-16
Identities = 34/79 (43%), Positives = 47/79 (59%)
Query: 146 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLPQFDPEEMIQCLNRLIQIDQE 205
G LFEG+KAYR DG+I +FRPE N RM A R +P E+ ++ + + ++
Sbjct: 119 GQGLFEGLKAYRKEDGNILLFRPEENAIRMRNGAERMCMPAPTVEQFVEAVKETVLANKR 178
Query: 206 WVPHTTAASLYIRPTLIGT 224
WVP SLYIRP L+G+
Sbjct: 179 WVPPPGKGSLYIRPLLMGS 197
Score = 78.7 bits (194), Expect = 2e-16
Identities = 34/79 (43%), Positives = 47/79 (59%)
Query: 223 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQE 282
G LFEG+KAYR DG+I +FRPE N RM A R +P E+ ++ + + ++
Sbjct: 119 GQGLFEGLKAYRKEDGNILLFRPEENAIRMRNGAERMCMPAPTVEQFVEAVKETVLANKR 178
Query: 283 WVPHTTAASLYIRPTLIGT 301
WVP SLYIRP L+G+
Sbjct: 179 WVPPPGKGSLYIRPLLMGS 197
>gnl|CDD|178664 PLN03117, PLN03117, Branched-chain-amino-acid aminotransferase;
Provisional.
Length = 355
Score = 90.4 bits (224), Expect = 1e-20
Identities = 43/125 (34%), Positives = 69/125 (55%), Gaps = 1/125 (0%)
Query: 23 QLKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGV 82
+L F V TD+M + Q + ++ P +++ P A +L+Y LFEG+KAYR
Sbjct: 24 ELGFALVPTDYMYVAKCK-QGESFSEGKIVPYGDISISPCAGILNYGQGLFEGLKAYRTE 82
Query: 83 DGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRP 142
DG I +FRP+ N RM A R + E+ ++ + + + +++WVP +LYIRP
Sbjct: 83 DGRITLFRPDQNALRMQTGADRLCMTPPSLEQFVEAVKQTVLANKKWVPPPGKGTLYIRP 142
Query: 143 TLIGT 147
LIG+
Sbjct: 143 LLIGS 147
Score = 76.1 bits (187), Expect = 9e-16
Identities = 32/79 (40%), Positives = 47/79 (59%)
Query: 146 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLPQFDPEEMIQCLNRLIQIDQE 205
G LFEG+KAYR DG I +FRP+ N RM A R + E+ ++ + + + +++
Sbjct: 69 GQGLFEGLKAYRTEDGRITLFRPDQNALRMQTGADRLCMTPPSLEQFVEAVKQTVLANKK 128
Query: 206 WVPHTTAASLYIRPTLIGT 224
WVP +LYIRP LIG+
Sbjct: 129 WVPPPGKGTLYIRPLLIGS 147
Score = 76.1 bits (187), Expect = 1e-15
Identities = 32/79 (40%), Positives = 47/79 (59%)
Query: 223 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQE 282
G LFEG+KAYR DG I +FRP+ N RM A R + E+ ++ + + + +++
Sbjct: 69 GQGLFEGLKAYRTEDGRITLFRPDQNALRMQTGADRLCMTPPSLEQFVEAVKQTVLANKK 128
Query: 283 WVPHTTAASLYIRPTLIGT 301
WVP +LYIRP LIG+
Sbjct: 129 WVPPPGKGTLYIRPLLIGS 147
>gnl|CDD|238254 cd00449, PLPDE_IV, PyridoxaL 5'-Phosphate Dependent Enzymes class
IV (PLPDE_IV). This D-amino acid superfamily, one of
five classes of PLPDE, consists of branched-chain amino
acid aminotransferases (BCAT), D-amino acid transferases
(DAAT), and 4-amino-4-deoxychorismate lyases (ADCL).
BCAT catalyzes the reversible transamination reaction
between the L-branched-chain amino and alpha-keto acids.
DAAT catalyzes the synthesis of D-glutamic acid and
D-alanine, and ADCL converts 4-amino-4-deoxychorismate
to p-aminobenzoate and pyruvate. Except for a few
enzymes, i. e., Escherichia coli and Salmonella BCATs,
which are homohexamers arranged as a double trimer, the
class IV PLPDEs are homodimers. Homodimer formation is
required for catalytic activity.
Length = 256
Score = 83.8 bits (208), Expect = 7e-19
Identities = 35/91 (38%), Positives = 50/91 (54%), Gaps = 13/91 (14%)
Query: 63 AKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQ-FDPEEMIQCLNR 121
+ LHY +FEG++A +G R+FR + ++DR+NRSA R GLP +D EE+ + L
Sbjct: 1 DRGLHYGDGVFEGLRAGKG-----RLFRLDEHLDRLNRSAKRLGLPIPYDREELREALKE 55
Query: 122 LIQIDQEWVPHTTAASLYIRPTLIGTDLFEG 152
L+ + ASLYIRP L G
Sbjct: 56 LVAAN-------NGASLYIRPLLTRGVGGLG 79
Score = 75.7 bits (187), Expect = 5e-16
Identities = 32/81 (39%), Positives = 46/81 (56%), Gaps = 13/81 (16%)
Query: 223 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQ-FDPEEMIQCLNRLIQIDQ 281
G +FEG++A +G R+FR + ++DR+NRSA R GLP +D EE+ + L L+ +
Sbjct: 7 GDGVFEGLRAGKG-----RLFRLDEHLDRLNRSAKRLGLPIPYDREELREALKELVAAN- 60
Query: 282 EWVPHTTAASLYIRPTLIGTD 302
ASLYIRP L
Sbjct: 61 ------NGASLYIRPLLTRGV 75
Score = 75.7 bits (187), Expect = 6e-16
Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 13/85 (15%)
Query: 146 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLPQ-FDPEEMIQCLNRLIQIDQ 204
G +FEG++A +G R+FR + ++DR+N+SA R GLP +D EE+ + L L+ +
Sbjct: 7 GDGVFEGLRAGKG-----RLFRLDEHLDRLNRSAKRLGLPIPYDREELREALKELVAAN- 60
Query: 205 EWVPHTTAASLYIRPTLIGTDLFEG 229
ASLYIRP L G
Sbjct: 61 ------NGASLYIRPLLTRGVGGLG 79
>gnl|CDD|178471 PLN02883, PLN02883, Branched-chain amino acid aminotransferase.
Length = 384
Score = 82.8 bits (204), Expect = 7e-18
Identities = 48/132 (36%), Positives = 69/132 (52%), Gaps = 1/132 (0%)
Query: 24 LKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVD 83
L F V TD M + G ++ +S + L+PAA +L+Y L EGMKAYRG D
Sbjct: 57 LGFSLVRTDFMFATKSCRD-GNFEQGYLSRYGNIELNPAAGILNYGQGLIEGMKAYRGED 115
Query: 84 GHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPT 143
G I +FRPE+N RM A R + + I+ + + + ++ WVP SLY+RP
Sbjct: 116 GRILLFRPELNAMRMKIGAERMCMHSPSVHQFIEGVKQTVLANRRWVPPPGKGSLYLRPL 175
Query: 144 LIGTDLFEGMKA 155
L G+ G+ A
Sbjct: 176 LFGSGASLGVAA 187
Score = 69.7 bits (170), Expect = 2e-13
Identities = 35/87 (40%), Positives = 48/87 (55%)
Query: 146 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLPQFDPEEMIQCLNRLIQIDQE 205
G L EGMKAYRG DG I +FRPE+N RM A R + + I+ + + + ++
Sbjct: 101 GQGLIEGMKAYRGEDGRILLFRPELNAMRMKIGAERMCMHSPSVHQFIEGVKQTVLANRR 160
Query: 206 WVPHTTAASLYIRPTLIGTDLFEGMKA 232
WVP SLY+RP L G+ G+ A
Sbjct: 161 WVPPPGKGSLYLRPLLFGSGASLGVAA 187
Score = 69.0 bits (168), Expect = 3e-13
Identities = 33/79 (41%), Positives = 45/79 (56%)
Query: 223 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQE 282
G L EGMKAYRG DG I +FRPE+N RM A R + + I+ + + + ++
Sbjct: 101 GQGLIEGMKAYRGEDGRILLFRPELNAMRMKIGAERMCMHSPSVHQFIEGVKQTVLANRR 160
Query: 283 WVPHTTAASLYIRPTLIGT 301
WVP SLY+RP L G+
Sbjct: 161 WVPPPGKGSLYLRPLLFGS 179
>gnl|CDD|177901 PLN02259, PLN02259, branched-chain-amino-acid aminotransferase 2.
Length = 388
Score = 79.0 bits (194), Expect = 1e-16
Identities = 41/130 (31%), Positives = 69/130 (53%), Gaps = 1/130 (0%)
Query: 24 LKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVD 83
L FG D+M ++ + + G + +SP + L P+A VL+Y ++EG KAYR +
Sbjct: 61 LGFGLNPADYMYVMKCS-KDGEFTQGELSPYGNIQLSPSAGVLNYGQAIYEGTKAYRKEN 119
Query: 84 GHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPT 143
G + +FRP+ N RM A R +P ++ + + + ++ WVP +LYIRP
Sbjct: 120 GKLLLFRPDHNAIRMKLGAERMLMPSPSVDQFVNAVKQTALANKRWVPPAGKGTLYIRPL 179
Query: 144 LIGTDLFEGM 153
L+G+ G+
Sbjct: 180 LMGSGPILGL 189
Score = 62.0 bits (150), Expect = 7e-11
Identities = 28/85 (32%), Positives = 46/85 (54%)
Query: 146 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLPQFDPEEMIQCLNRLIQIDQE 205
G ++EG KAYR +G + +FRP+ N RM A R +P ++ + + + ++
Sbjct: 105 GQAIYEGTKAYRKENGKLLLFRPDHNAIRMKLGAERMLMPSPSVDQFVNAVKQTALANKR 164
Query: 206 WVPHTTAASLYIRPTLIGTDLFEGM 230
WVP +LYIRP L+G+ G+
Sbjct: 165 WVPPAGKGTLYIRPLLMGSGPILGL 189
Score = 61.7 bits (149), Expect = 9e-11
Identities = 27/79 (34%), Positives = 44/79 (55%)
Query: 223 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQE 282
G ++EG KAYR +G + +FRP+ N RM A R +P ++ + + + ++
Sbjct: 105 GQAIYEGTKAYRKENGKLLLFRPDHNAIRMKLGAERMLMPSPSVDQFVNAVKQTALANKR 164
Query: 283 WVPHTTAASLYIRPTLIGT 301
WVP +LYIRP L+G+
Sbjct: 165 WVPPAGKGTLYIRPLLMGS 183
>gnl|CDD|223193 COG0115, IlvE, Branched-chain amino acid
aminotransferase/4-amino-4-deoxychorismate lyase [Amino
acid transport and metabolism / Coenzyme metabolism].
Length = 284
Score = 72.8 bits (179), Expect = 7e-15
Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 10/112 (8%)
Query: 45 GWQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALR 104
W + P + L + LHY +FE ++AY G ++FR + ++ R+ RSA R
Sbjct: 4 IWVNGELVPEEDAKLSVLDRGLHYGDGVFETLRAYNG-----KLFRLDEHLARLKRSAKR 58
Query: 105 AGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAY 156
GLP+ + EE I+ L +L+ VP LYIRP + G G++
Sbjct: 59 LGLPRPESEEEIELLIQLLLAKNNLVP-----GLYIRPLVRGGGGGLGVRDA 105
Score = 66.3 bits (162), Expect = 1e-12
Identities = 36/114 (31%), Positives = 57/114 (50%), Gaps = 11/114 (9%)
Query: 121 RLIQIDQEWVPHTTAA-SLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSA 179
I ++ E VP A S+ R G +FE ++AY G ++FR + ++ R+ +SA
Sbjct: 2 GKIWVNGELVPEEDAKLSVLDRGLHYGDGVFETLRAYNG-----KLFRLDEHLARLKRSA 56
Query: 180 LRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAY 233
R GLP+ + EE I+ L +L+ VP LYIRP + G G++
Sbjct: 57 KRLGLPRPESEEEIELLIQLLLAKNNLVP-----GLYIRPLVRGGGGGLGVRDA 105
Score = 66.3 bits (162), Expect = 2e-12
Identities = 36/106 (33%), Positives = 54/106 (50%), Gaps = 11/106 (10%)
Query: 198 RLIQIDQEWVPHTTAA-SLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSA 256
I ++ E VP A S+ R G +FE ++AY G ++FR + ++ R+ RSA
Sbjct: 2 GKIWVNGELVPEEDAKLSVLDRGLHYGDGVFETLRAYNG-----KLFRLDEHLARLKRSA 56
Query: 257 LRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTD 302
R GLP+ + EE I+ L +L+ VP LYIRP + G
Sbjct: 57 KRLGLPRPESEEEIELLIQLLLAKNNLVP-----GLYIRPLVRGGG 97
>gnl|CDD|235841 PRK06606, PRK06606, branched-chain amino acid aminotransferase;
Validated.
Length = 306
Score = 47.1 bits (113), Expect = 4e-06
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 17/88 (19%)
Query: 63 AKV------LHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSA--LRAGLPQFDPEE 114
AKV LHY +FEG++AY G +FR + R+ SA LR +P + +E
Sbjct: 21 AKVHVLTHALHYGTGVFEGIRAYDTPKGPA-IFRLREHTKRLFNSAKILRMEIP-YSVDE 78
Query: 115 MIQCLNRLIQIDQEWVPHTTAASLYIRP 142
L++ +E V S YIRP
Sbjct: 79 -------LMEAQREVVRKNNLKSAYIRP 99
Score = 42.1 bits (100), Expect = 2e-04
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 11/76 (14%)
Query: 146 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSA--LRAGLPQFDPEEMIQCLNRLIQID 203
GT +FEG++AY G +FR + R+ SA LR +P + +E L++
Sbjct: 33 GTGVFEGIRAYDTPKGPA-IFRLREHTKRLFNSAKILRMEIP-YSVDE-------LMEAQ 83
Query: 204 QEWVPHTTAASLYIRP 219
+E V S YIRP
Sbjct: 84 REVVRKNNLKSAYIRP 99
Score = 41.7 bits (99), Expect = 2e-04
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 11/76 (14%)
Query: 223 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSA--LRAGLPQFDPEEMIQCLNRLIQID 280
GT +FEG++AY G +FR + R+ SA LR +P + +E L++
Sbjct: 33 GTGVFEGIRAYDTPKGPA-IFRLREHTKRLFNSAKILRMEIP-YSVDE-------LMEAQ 83
Query: 281 QEWVPHTTAASLYIRP 296
+E V S YIRP
Sbjct: 84 REVVRKNNLKSAYIRP 99
>gnl|CDD|130192 TIGR01122, ilvE_I, branched-chain amino acid aminotransferase,
group I. Among the class IV aminotransferases are two
phylogenetically separable groups of branched-chain
amino acid aminotransferase (IlvE). The last common
ancestor of the two lineages appears also to have given
rise to a family of D-amino acid aminotransferases
(DAAT). This model represents the IlvE family more
strongly similar to the DAAT family [Amino acid
biosynthesis, Pyruvate family].
Length = 298
Score = 42.0 bits (99), Expect = 2e-04
Identities = 24/104 (23%), Positives = 41/104 (39%), Gaps = 11/104 (10%)
Query: 58 TLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLP-QFDPEEMI 116
+H LHY +FEG++AY G +FR + ++ R+ SA + + EE
Sbjct: 13 KVHVLTHALHYGTGVFEGIRAYDTDKG-PAIFRLKEHIQRLYDSAKIYRMEIPYSKEE-- 69
Query: 117 QCLNRLIQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVD 160
L++ +E + S YIRP + +
Sbjct: 70 -----LMEATRETLRKNNLRSAYIRP--LVFRGDGDLGLNPRAG 106
Score = 37.7 bits (88), Expect = 0.005
Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 11/93 (11%)
Query: 146 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLP-QFDPEEMIQCLNRLIQIDQ 204
GT +FEG++AY G +FR + ++ R+ SA + + EE L++ +
Sbjct: 24 GTGVFEGIRAYDTDKG-PAIFRLKEHIQRLYDSAKIYRMEIPYSKEE-------LMEATR 75
Query: 205 EWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVD 237
E + S YIRP + +
Sbjct: 76 ETLRKNNLRSAYIRP--LVFRGDGDLGLNPRAG 106
Score = 36.6 bits (85), Expect = 0.010
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
Query: 223 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLP-QFDPEEMIQCLNRLIQIDQ 281
GT +FEG++AY G +FR + ++ R+ SA + + EE L++ +
Sbjct: 24 GTGVFEGIRAYDTDKG-PAIFRLKEHIQRLYDSAKIYRMEIPYSKEE-------LMEATR 75
Query: 282 EWVPHTTAASLYIRP 296
E + S YIRP
Sbjct: 76 ETLRKNNLRSAYIRP 90
>gnl|CDD|236238 PRK08320, PRK08320, branched-chain amino acid aminotransferase;
Reviewed.
Length = 288
Score = 37.9 bits (89), Expect = 0.004
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 13/78 (16%)
Query: 122 LIQIDQEWVPHTTAA-SLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSA- 179
LI ++ E+VP A S++ L G +FEG++AY G R+FR + ++DR+ SA
Sbjct: 4 LIYLNGEFVPKEEAKVSVFDHGFLYGDGVFEGIRAYNG-----RVFRLKEHIDRLYDSAK 58
Query: 180 ---LRAGLPQFDPEEMIQ 194
L L + EEM +
Sbjct: 59 AIMLEIPLSK---EEMTE 73
Score = 36.4 bits (85), Expect = 0.011
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 13/78 (16%)
Query: 199 LIQIDQEWVPHTTAA-SLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSA- 256
LI ++ E+VP A S++ L G +FEG++AY G R+FR + ++DR+ SA
Sbjct: 4 LIYLNGEFVPKEEAKVSVFDHGFLYGDGVFEGIRAYNG-----RVFRLKEHIDRLYDSAK 58
Query: 257 ---LRAGLPQFDPEEMIQ 271
L L + EEM +
Sbjct: 59 AIMLEIPLSK---EEMTE 73
Score = 29.5 bits (67), Expect = 2.0
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 12/49 (24%)
Query: 73 FEGMKAYRGVDGHIRMFRPEMNMDRMNRSA----LRAGLPQFDPEEMIQ 117
FEG++AY G R+FR + ++DR+ SA L L + EEM +
Sbjct: 33 FEGIRAYNG-----RVFRLKEHIDRLYDSAKAIMLEIPLSK---EEMTE 73
>gnl|CDD|238799 cd01558, D-AAT_like, D-Alanine aminotransferase (D-AAT_like):
D-amino acid aminotransferase catalyzes transamination
between D-amino acids and their respective alpha-keto
acids. It plays a major role in the synthesis of
bacterial cell wall components like D-alanine and
D-glutamate in addition to other D-amino acids. The
enzyme like other members of this superfamily requires
PLP as a cofactor. Members of this subgroup are found in
all three forms of life.
Length = 270
Score = 37.6 bits (88), Expect = 0.005
Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 12/95 (12%)
Query: 205 EWVPHTTAA-SLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQ 263
E+VP A S++ R L G ++E ++ Y G + F + ++DR+ RSA +
Sbjct: 5 EYVPREEAKVSVFDRGFLFGDGVYEVIRVYNG-----KPFALDEHLDRLYRSAKELRIDI 59
Query: 264 -FDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPT 297
+ EE+ + + L+ + +YI+ T
Sbjct: 60 PYTREELKELIRELVAKN-----EGGEGDVYIQVT 89
Score = 36.8 bits (86), Expect = 0.010
Identities = 19/100 (19%), Positives = 37/100 (37%), Gaps = 24/100 (24%)
Query: 73 FEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQ-FDPEEMIQCLNRLIQIDQEWVP 131
+E ++ Y G + F + ++DR+ RSA + + EE+ + + L+ +
Sbjct: 28 YEVIRVYNG-----KPFALDEHLDRLYRSAKELRIDIPYTREELKELIRELVAKN----- 77
Query: 132 HTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMN 171
+YI+ T RGV F +
Sbjct: 78 EGGEGDVYIQVT-------------RGVGPRGHDFPKCVK 104
>gnl|CDD|237362 PRK13356, PRK13356, aminotransferase; Provisional.
Length = 286
Score = 33.4 bits (77), Expect = 0.12
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 22/80 (27%)
Query: 223 GTDLFEGMKAYRGV----DGHIRMFRPEMNMDRMNRSALRAGL-PQFDPEEMIQ-CLNRL 276
G+ +F+G +A+ GV D H R+NRSA GL P EE+ L
Sbjct: 33 GSTVFDGARAFEGVTPDLDLHCA---------RVNRSAEALGLKPTVSAEEIEALAREGL 83
Query: 277 IQIDQEWVPHTTAASLYIRP 296
+ D + +LYIRP
Sbjct: 84 KRFDPD-------TALYIRP 96
Score = 31.8 bits (73), Expect = 0.30
Identities = 26/86 (30%), Positives = 34/86 (39%), Gaps = 22/86 (25%)
Query: 73 FEGMKAYRGV----DGHIRMFRPEMNMDRMNRSALRAGL-PQFDPEEMIQ-CLNRLIQID 126
F+G +A+ GV D H R+NRSA GL P EE+ L + D
Sbjct: 37 FDGARAFEGVTPDLDLHCA---------RVNRSAEALGLKPTVSAEEIEALAREGLKRFD 87
Query: 127 QEWVPHTTAASLYIRPTLIGTDLFEG 152
+ +LYIRP D F
Sbjct: 88 PD-------TALYIRPMYWAEDGFAS 106
>gnl|CDD|238800 cd01559, ADCL_like, ADCL_like: 4-Amino-4-deoxychorismate lyase: is
a member of the fold-type IV of PLP dependent enzymes
that converts 4-amino-4-deoxychorismate (ADC) to
p-aminobenzoate and pyruvate. Based on the information
available from the crystal structure, most members of
this subgroup are likely to function as dimers. The
enzyme from E.Coli, the structure of which is available,
is a homodimer that is folded into a small and a larger
domain. The coenzyme pyridoxal 5; -phosphate resides at
the interface of the two domains that is linked by a
flexible loop. Members of this subgroup are found in
Eukaryotes and bacteria.
Length = 249
Score = 33.1 bits (76), Expect = 0.12
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 13/66 (19%)
Query: 66 LHYSVELFEGMKAYRG----VDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNR 121
Y +FE M+A G +D H+ R+ RSA R G+P+ D + L
Sbjct: 4 FAYGDGVFETMRALDGRLFLLDAHL---------ARLERSARRLGIPEPDLPRLRAALES 54
Query: 122 LIQIDQ 127
L+ +
Sbjct: 55 LLAAND 60
Score = 32.7 bits (75), Expect = 0.17
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 13/68 (19%)
Query: 218 RPTLIGTDLFEGMKAYRG----VDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCL 273
R G +FE M+A G +D H+ R+ RSA R G+P+ D + L
Sbjct: 2 RGFAYGDGVFETMRALDGRLFLLDAHL---------ARLERSARRLGIPEPDLPRLRAAL 52
Query: 274 NRLIQIDQ 281
L+ +
Sbjct: 53 ESLLAAND 60
Score = 31.5 bits (72), Expect = 0.38
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 13/68 (19%)
Query: 141 RPTLIGTDLFEGMKAYRG----VDGHIRMFRPEMNMDRMNQSALRAGLPQFDPEEMIQCL 196
R G +FE M+A G +D H+ R+ +SA R G+P+ D + L
Sbjct: 2 RGFAYGDGVFETMRALDGRLFLLDAHL---------ARLERSARRLGIPEPDLPRLRAAL 52
Query: 197 NRLIQIDQ 204
L+ +
Sbjct: 53 ESLLAAND 60
>gnl|CDD|222487 pfam13981, SopA, SopA-like central domain. This domain is found in
the E. coli Type III secretion effector proteins SopA
and NleL. These proteins have been shown to act as E3
ubiquitin ligase enzymes.
Length = 135
Score = 30.8 bits (70), Expect = 0.32
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 170 MNMDRMNQSALRAGLPQFD--PEEMIQCLNRLIQI 202
+N NQ L A + FD PE M+ C + IQ
Sbjct: 65 INKLENNQRILNAFIDYFDRRPELMLSCNSAFIQT 99
Score = 28.5 bits (64), Expect = 2.6
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 93 MNMDRMNRSALRAGLPQFD--PEEMIQCLNRLIQI 125
+N N+ L A + FD PE M+ C + IQ
Sbjct: 65 INKLENNQRILNAFIDYFDRRPELMLSCNSAFIQT 99
Score = 28.5 bits (64), Expect = 2.6
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 247 MNMDRMNRSALRAGLPQFD--PEEMIQCLNRLIQI 279
+N N+ L A + FD PE M+ C + IQ
Sbjct: 65 INKLENNQRILNAFIDYFDRRPELMLSCNSAFIQT 99
>gnl|CDD|224446 COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large
subunit CoxL/CutL homologs [Energy production and
conversion].
Length = 731
Score = 29.6 bits (67), Expect = 2.6
Identities = 22/96 (22%), Positives = 34/96 (35%), Gaps = 9/96 (9%)
Query: 139 YIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLPQFDPEEMIQCLNR 198
YI P L+ T++ AYRG F E +D + A G+ DP E+ L
Sbjct: 329 YIEPYLVHTNM-PPNGAYRGAGRPEGTFALERAVDEL---AEELGI---DPVEIR--LRN 379
Query: 199 LIQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYR 234
LI+ + + Y+ F +
Sbjct: 380 LIRGGPFGLGRRYDSGDYLEELDEAAKRFGWSERPV 415
>gnl|CDD|177823 PLN02165, PLN02165, adenylate isopentenyltransferase.
Length = 334
Score = 29.0 bits (65), Expect = 2.7
Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 17/74 (22%)
Query: 32 DHMLQIEFNEQLGGWQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRP 91
D M+ E+L + P S + L + A V + D + + + P
Sbjct: 197 DEMMDSGMFEELAEFYDPVKSGSEPLGIRKAIGVPEF--------------DRYFKKYPP 242
Query: 92 EMNM---DRMNRSA 102
E M D+ ++A
Sbjct: 243 ENKMGKWDQARKAA 256
>gnl|CDD|236000 PRK07360, PRK07360, FO synthase subunit 2; Reviewed.
Length = 371
Score = 29.1 bits (66), Expect = 3.3
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 59 LHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPE 92
LHPAA L + +E+ E +K D H+ F P
Sbjct: 117 LHPAADSLEFYLEILEAIKEEFP-DIHLHAFSPM 149
>gnl|CDD|216275 pfam01063, Aminotran_4, Aminotransferase class IV. The D-amino
acid transferases (D-AAT) are required by bacteria to
catalyze the synthesis of D-glutamic acid and D-alanine,
which are essential constituents of bacterial cell wall
and are the building block for other D-amino acids.
Despite the difference in the structure of the
substrates, D-AATs and L-ATTs have strong similarity.
Length = 231
Score = 28.6 bits (64), Expect = 3.4
Identities = 13/70 (18%), Positives = 28/70 (40%), Gaps = 6/70 (8%)
Query: 89 FRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTD 148
F + +++R+ RSA E++ + + L++ + A S +R + D
Sbjct: 1 FLLDEHLERLRRSAKALIGLPLSIEDLRKIIQELLEA------NGPAGSGRLRILVSRGD 54
Query: 149 LFEGMKAYRG 158
G+ G
Sbjct: 55 GGRGLSPPEG 64
Score = 28.6 bits (64), Expect = 3.9
Identities = 11/60 (18%), Positives = 25/60 (41%), Gaps = 6/60 (10%)
Query: 243 FRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTD 302
F + +++R+ RSA E++ + + L++ + A S +R + D
Sbjct: 1 FLLDEHLERLRRSAKALIGLPLSIEDLRKIIQELLEA------NGPAGSGRLRILVSRGD 54
Score = 27.4 bits (61), Expect = 8.5
Identities = 12/70 (17%), Positives = 28/70 (40%), Gaps = 6/70 (8%)
Query: 166 FRPEMNMDRMNQSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTD 225
F + +++R+ +SA E++ + + L++ + A S +R + D
Sbjct: 1 FLLDEHLERLRRSAKALIGLPLSIEDLRKIIQELLEA------NGPAGSGRLRILVSRGD 54
Query: 226 LFEGMKAYRG 235
G+ G
Sbjct: 55 GGRGLSPPEG 64
>gnl|CDD|181025 PRK07544, PRK07544, branched-chain amino acid aminotransferase;
Validated.
Length = 292
Score = 28.4 bits (64), Expect = 4.9
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 5/37 (13%)
Query: 66 LHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSA 102
LHY+ +FEG +AY G ++F+ + +R+ RSA
Sbjct: 32 LHYASSVFEGERAYGG-----KIFKLREHSERLRRSA 63
>gnl|CDD|218745 pfam05783, DLIC, Dynein light intermediate chain (DLIC). This
family consists of several eukaryotic dynein light
intermediate chain proteins. The light intermediate
chains (LICs) of cytoplasmic dynein consist of multiple
isoforms, which undergo post-translational modification
to produce a large number of species. DLIC1 is known to
be involved in assembly, organisation, and function of
centrosomes and mitotic spindles when bound to
pericentrin. DLIC2 is a subunit of cytoplasmic dynein 2
that may play a role in maintaining Golgi organisation
by binding cytoplasmic dynein 2 to its Golgi-associated
cargo.
Length = 490
Score = 27.9 bits (62), Expect = 7.9
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Query: 88 MFRPEMNMDRMNR--SALR---AGLPQFDPEEMIQCLNRLIQIDQEWV 130
M RP M+ + + S LR L PEEM + RL++ QE+V
Sbjct: 130 MSRPWTIMESLQKWASVLREHIDKLK-IPPEEMRELEQRLVKDFQEYV 176
Score = 27.9 bits (62), Expect = 7.9
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Query: 242 MFRPEMNMDRMNR--SALR---AGLPQFDPEEMIQCLNRLIQIDQEWV 284
M RP M+ + + S LR L PEEM + RL++ QE+V
Sbjct: 130 MSRPWTIMESLQKWASVLREHIDKLK-IPPEEMRELEQRLVKDFQEYV 176
Score = 27.5 bits (61), Expect = 9.1
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Query: 165 MFRPEMNMDRMNQ--SALR---AGLPQFDPEEMIQCLNRLIQIDQEWV 207
M RP M+ + + S LR L PEEM + RL++ QE+V
Sbjct: 130 MSRPWTIMESLQKWASVLREHIDKLK-IPPEEMRELEQRLVKDFQEYV 176
>gnl|CDD|223449 COG0372, GltA, Citrate synthase [Energy production and conversion].
Length = 390
Score = 27.6 bits (62), Expect = 8.1
Identities = 9/46 (19%), Positives = 15/46 (32%), Gaps = 3/46 (6%)
Query: 148 DLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAG---LPQFDPE 190
F + A R + + + D + LR L F P+
Sbjct: 76 AFFAKLAARRTLPEQVIRLLESLPRDAHPMAVLRTAVSALSAFYPD 121
>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the
binding protein-dependent phosphonate transport system.
Phosphonates are a class of organophosphorus compounds
characterized by a chemically stable
carbon-to-phosphorus (C-P) bond. Phosphonates are
widespread among naturally occurring compounds in all
kingdoms of wildlife, but only prokaryotic
microorganisms are able to cleave this bond. Certain
bacteria such as E. coli can use alkylphosphonates as a
phosphorus source. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 241
Score = 27.1 bits (61), Expect = 9.1
Identities = 24/101 (23%), Positives = 40/101 (39%), Gaps = 27/101 (26%)
Query: 192 MIQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNM-D 250
+++CLN L++ T+ S+ I T I KA R + I M + N+ +
Sbjct: 43 LLRCLNGLVEP--------TSGSVLIDGTDINKL---KGKALRQLRRQIGMIFQQFNLIE 91
Query: 251 RMN------------RSALRAGLPQFDPEEM---IQCLNRL 276
R++ RS R+ F EE + L R+
Sbjct: 92 RLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERV 132
>gnl|CDD|179619 PRK03641, PRK03641, hypothetical protein; Provisional.
Length = 220
Score = 27.4 bits (61), Expect = 9.5
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 92 EMNMDRMNRSALRAGLPQFDP 112
E+ M+R N+SA RA LPQF
Sbjct: 145 EVEMERYNKSAKRASLPQFAT 165
Score = 27.4 bits (61), Expect = 9.5
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 246 EMNMDRMNRSALRAGLPQFDP 266
E+ M+R N+SA RA LPQF
Sbjct: 145 EVEMERYNKSAKRASLPQFAT 165
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.139 0.427
Gapped
Lambda K H
0.267 0.0703 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,015,736
Number of extensions: 1543566
Number of successful extensions: 2047
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2022
Number of HSP's successfully gapped: 67
Length of query: 302
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 206
Effective length of database: 6,679,618
Effective search space: 1376001308
Effective search space used: 1376001308
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 59 (26.6 bits)