RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16306
(302 letters)
>2coi_A Branched chain aminotransferase 1, cytosolic; PLP-dependent enzyme;
HET: PLP GBN; 1.90A {Homo sapiens} PDB: 2cog_A* 2coj_A*
2abj_A*
Length = 386
Score = 230 bits (590), Expect = 6e-74
Identities = 81/143 (56%), Positives = 113/143 (79%), Gaps = 1/143 (0%)
Query: 13 EQLQPKPEVSQLKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLHPAAKVLHYSVEL 72
L+ KP+ + L FGTVFTDHML +E++ + GW+ P + PL+ L+LHP + LHY+VEL
Sbjct: 36 TILKEKPDPNNLVFGTVFTDHMLTVEWSSE-FGWEKPHIKPLQNLSLHPGSSALHYAVEL 94
Query: 73 FEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPH 132
FEG+KA+RGVD IR+F+P +NMDRM RSA+RA LP FD EE+++C+ +L+++DQEWVP+
Sbjct: 95 FEGLKAFRGVDNKIRLFQPNLNMDRMYRSAVRATLPVFDKEELLECIQQLVKLDQEWVPY 154
Query: 133 TTAASLYIRPTLIGTDLFEGMKA 155
+T+ASLYIRPT IGT+ G+K
Sbjct: 155 STSASLYIRPTFIGTEPSLGVKK 177
Score = 151 bits (384), Expect = 2e-43
Identities = 50/80 (62%), Positives = 69/80 (86%)
Query: 223 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQE 282
+LFEG+KA+RGVD IR+F+P +NMDRM RSA+RA LP FD EE+++C+ +L+++DQE
Sbjct: 91 AVELFEGLKAFRGVDNKIRLFQPNLNMDRMYRSAVRATLPVFDKEELLECIQQLVKLDQE 150
Query: 283 WVPHTTAASLYIRPTLIGTD 302
WVP++T+ASLYIRPT IGT+
Sbjct: 151 WVPYSTSASLYIRPTFIGTE 170
Score = 151 bits (384), Expect = 2e-43
Identities = 51/87 (58%), Positives = 72/87 (82%)
Query: 146 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLPQFDPEEMIQCLNRLIQIDQE 205
+LFEG+KA+RGVD IR+F+P +NMDRM +SA+RA LP FD EE+++C+ +L+++DQE
Sbjct: 91 AVELFEGLKAFRGVDNKIRLFQPNLNMDRMYRSAVRATLPVFDKEELLECIQQLVKLDQE 150
Query: 206 WVPHTTAASLYIRPTLIGTDLFEGMKA 232
WVP++T+ASLYIRPT IGT+ G+K
Sbjct: 151 WVPYSTSASLYIRPTFIGTEPSLGVKK 177
>2a1h_A Branched chain aminotransferase; fold type IV; HET: PLP GBN; 1.80A
{Homo sapiens} SCOP: e.17.1.1 PDB: 1ekp_A* 1ekv_A*
1ekf_A* 1kta_A* 1kt8_A* 2hhf_B* 2hhf_A* 2hgw_A* 2hg8_A*
2hgx_A* 2hdk_A*
Length = 365
Score = 229 bits (587), Expect = 8e-74
Identities = 72/152 (47%), Positives = 103/152 (67%), Gaps = 3/152 (1%)
Query: 4 EIHVQLCSPEQLQPKPEVSQLKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLHPAA 63
++ +++ +P P L FG FTDHML +E+N+ GW PR+ P + LTLHPA+
Sbjct: 9 DLQLEMTQKPHKKPGPG-EPLVFGKTFTDHMLMVEWND--KGWGQPRIQPFQNLTLHPAS 65
Query: 64 KVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLI 123
LHYS++LFEGMKA++G D +R+FRP +NMDRM RSA+R LP FD E+++C+ RLI
Sbjct: 66 SSLHYSLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECIRRLI 125
Query: 124 QIDQEWVPHTTAASLYIRPTLIGTDLFEGMKA 155
++D++WVP SLY+RP LIG + G+
Sbjct: 126 EVDKDWVPDAAGTSLYVRPVLIGNEPSLGVSQ 157
Score = 151 bits (383), Expect = 2e-43
Identities = 43/80 (53%), Positives = 59/80 (73%)
Query: 223 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQE 282
LFEGMKA++G D +R+FRP +NMDRM RSA+R LP FD E+++C+ RLI++D++
Sbjct: 71 SLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECIRRLIEVDKD 130
Query: 283 WVPHTTAASLYIRPTLIGTD 302
WVP SLY+RP LIG +
Sbjct: 131 WVPDAAGTSLYVRPVLIGNE 150
Score = 151 bits (383), Expect = 2e-43
Identities = 43/87 (49%), Positives = 61/87 (70%)
Query: 146 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLPQFDPEEMIQCLNRLIQIDQE 205
LFEGMKA++G D +R+FRP +NMDRM +SA+R LP FD E+++C+ RLI++D++
Sbjct: 71 SLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECIRRLIEVDKD 130
Query: 206 WVPHTTAASLYIRPTLIGTDLFEGMKA 232
WVP SLY+RP LIG + G+
Sbjct: 131 WVPDAAGTSLYVRPVLIGNEPSLGVSQ 157
>3dth_A Branched-chain amino acid aminotransferase; open twisted
alpha/beta; HET: PLP OBZ; 1.85A {Mycobacterium
smegmatis} PDB: 3dtf_A* 3dtg_A* 3jz6_A* 3ht5_A*
Length = 372
Score = 212 bits (543), Expect = 5e-67
Identities = 57/147 (38%), Positives = 83/147 (56%), Gaps = 3/147 (2%)
Query: 11 SPEQLQPKPE-VSQLKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLHPAAKVLHYS 69
+P + ++ FG +TDHM+ I++ GW +V P + L P+A VLHY
Sbjct: 19 NPATDAVRESILANPGFGKYYTDHMVSIDYTVD-EGWHNAQVIPYGPIQLDPSAIVLHYG 77
Query: 70 VELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEW 129
E+FEG+KAYR DG I FRPE N R+ SA R +P+ E I+ L +LI +D++W
Sbjct: 78 QEIFEGLKAYRWADGSIVSFRPEANAARLQSSARRLAIPELPEEVFIESLRQLIAVDEKW 137
Query: 130 VPHT-TAASLYIRPTLIGTDLFEGMKA 155
VP SLY+RP +I T+ G++
Sbjct: 138 VPPAGGEESLYLRPFVIATEPGLGVRP 164
Score = 139 bits (353), Expect = 5e-39
Identities = 38/88 (43%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
Query: 146 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLPQFDPEEMIQCLNRLIQIDQE 205
G ++FEG+KAYR DG I FRPE N R+ SA R +P+ E I+ L +LI +D++
Sbjct: 77 GQEIFEGLKAYRWADGSIVSFRPEANAARLQSSARRLAIPELPEEVFIESLRQLIAVDEK 136
Query: 206 WVPHT-TAASLYIRPTLIGTDLFEGMKA 232
WVP SLY+RP +I T+ G++
Sbjct: 137 WVPPAGGEESLYLRPFVIATEPGLGVRP 164
Score = 139 bits (353), Expect = 6e-39
Identities = 37/81 (45%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 223 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQE 282
G ++FEG+KAYR DG I FRPE N R+ SA R +P+ E I+ L +LI +D++
Sbjct: 77 GQEIFEGLKAYRWADGSIVSFRPEANAARLQSSARRLAIPELPEEVFIESLRQLIAVDEK 136
Query: 283 WVPHT-TAASLYIRPTLIGTD 302
WVP SLY+RP +I T+
Sbjct: 137 WVPPAGGEESLYLRPFVIATE 157
>3u0g_A Putative branched-chain amino acid aminotransfera; structural
genomics, seattle structural genomics center for
infectious disease; 1.90A {Burkholderia pseudomallei}
Length = 328
Score = 49.5 bits (119), Expect = 5e-07
Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 21/106 (19%)
Query: 58 TLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSA--LRAGLPQFDPEEM 115
+H LHY + +FEG++AY+ DG +FR + + R+ SA + +P FD E +
Sbjct: 44 KIHVLTHTLHYGMGVFEGVRAYKTADGGTAIFRLKEHTKRLLNSAKIFQMDVP-FDQETL 102
Query: 116 IQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDG 161
+++ ++ S Y+RP + G +
Sbjct: 103 EAAQRDVVRENK-------LESCYLRPI-----------IWIGSEK 130
Score = 44.9 bits (107), Expect = 2e-05
Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 21/95 (22%)
Query: 146 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSA--LRAGLPQFDPEEMIQCLNRLIQID 203
G +FEG++AY+ DG +FR + + R+ SA + +P FD E + +++ +
Sbjct: 55 GMGVFEGVRAYKTADGGTAIFRLKEHTKRLLNSAKIFQMDVP-FDQETLEAAQRDVVREN 113
Query: 204 QEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDG 238
+ S Y+RP + G +
Sbjct: 114 K-------LESCYLRPI-----------IWIGSEK 130
Score = 43.4 bits (103), Expect = 4e-05
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 10/76 (13%)
Query: 223 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSA--LRAGLPQFDPEEMIQCLNRLIQID 280
G +FEG++AY+ DG +FR + + R+ SA + +P FD E + +++ +
Sbjct: 55 GMGVFEGVRAYKTADGGTAIFRLKEHTKRLLNSAKIFQMDVP-FDQETLEAAQRDVVREN 113
Query: 281 QEWVPHTTAASLYIRP 296
+ S Y+RP
Sbjct: 114 K-------LESCYLRP 122
>3sno_A Hypothetical aminotransferase; D-aminoacid aminotransferase-like
PLP-dependent enzymes, STR genomics; HET: MSE; 1.60A
{Corynebacterium glutamicum}
Length = 315
Score = 47.3 bits (113), Expect = 2e-06
Identities = 19/114 (16%), Positives = 33/114 (28%), Gaps = 16/114 (14%)
Query: 189 PEEMIQCLNRLIQIDQEWVPHTTAASLYIRPT----LIGTDLFEGMKAYRGVDGHIRMFR 244
P +I +++ + + G +FE + G
Sbjct: 12 PTPVI----LIVEPYGGSIRQQNPNLPMVFWDDAALTRGDGIFETLLIRDG-----HACN 62
Query: 245 PEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTL 298
+ +R SA GLP+ E+ + I + W H A TL
Sbjct: 63 VRRHGERFKASAALLGLPEPILEDWEKATQMGI---ESWYSHPNAGEASCTWTL 113
Score = 45.0 bits (107), Expect = 1e-05
Identities = 19/114 (16%), Positives = 33/114 (28%), Gaps = 16/114 (14%)
Query: 112 PEEMIQCLNRLIQIDQEWVPHTTAASLYIRPT----LIGTDLFEGMKAYRGVDGHIRMFR 167
P +I +++ + + G +FE + G
Sbjct: 12 PTPVI----LIVEPYGGSIRQQNPNLPMVFWDDAALTRGDGIFETLLIRDG-----HACN 62
Query: 168 PEMNMDRMNQSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTL 221
+ +R SA GLP+ E+ + I + W H A TL
Sbjct: 63 VRRHGERFKASAALLGLPEPILEDWEKATQMGI---ESWYSHPNAGEASCTWTL 113
Score = 42.7 bits (101), Expect = 7e-05
Identities = 16/73 (21%), Positives = 24/73 (32%), Gaps = 8/73 (10%)
Query: 72 LFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVP 131
+FE + G + +R SA GLP+ E+ + I + W
Sbjct: 49 IFETLLIRDG-----HACNVRRHGERFKASAALLGLPEPILEDWEKATQMGI---ESWYS 100
Query: 132 HTTAASLYIRPTL 144
H A TL
Sbjct: 101 HPNAGEASCTWTL 113
>1iye_A Branched-chain amino acid aminotransferase; hexamer, PLP; HET: PGU;
1.82A {Escherichia coli} SCOP: e.17.1.1 PDB: 1i1l_A*
1i1m_A* 1iyd_A* 1i1k_A* 1a3g_A*
Length = 309
Score = 46.0 bits (110), Expect = 6e-06
Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 22/106 (20%)
Query: 58 TLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSA--LRAGLPQFDPEEM 115
+H + LHY +FEG++ Y G +FR +M R++ SA R + +E+
Sbjct: 22 KVHVMSHALHYGTSVFEGIRCYDSHKG-PVVFRHREHMQRLHDSAKIYRFPVS-QSIDEL 79
Query: 116 IQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDG 161
++ +I+ + S YIRP + G G
Sbjct: 80 MEACRDVIRKNN-------LTSAYIRPL-----------IFVGDVG 107
Score = 40.3 bits (95), Expect = 5e-04
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 11/76 (14%)
Query: 223 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSA--LRAGLPQFDPEEMIQCLNRLIQID 280
GT +FEG++ Y G +FR +M R++ SA R + +E+++ +I+ +
Sbjct: 33 GTSVFEGIRCYDSHKG-PVVFRHREHMQRLHDSAKIYRFPVS-QSIDELMEACRDVIRKN 90
Query: 281 QEWVPHTTAASLYIRP 296
S YIRP
Sbjct: 91 N-------LTSAYIRP 99
>2eiy_A ILVE, branched-chain amino acid aminotransferase; PLP-dependent
enzyme; HET: PLP; 1.35A {Thermus thermophilus} PDB:
1wrv_A* 2ej0_A* 2ej2_A* 2ej3_A*
Length = 308
Score = 45.7 bits (109), Expect = 7e-06
Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 22/106 (20%)
Query: 58 TLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSA--LRAGLPQFDPEEM 115
+ LHY +FEG++AY G +FR + ++ R SA LR +P F PEE+
Sbjct: 21 KTSVLSHALHYGTSVFEGIRAYETAKG-PAIFRLKEHVKRFYNSAKVLRMEIP-FAPEEL 78
Query: 116 IQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDG 161
+ + +++ + S YIRP A+ G
Sbjct: 79 EEAIKEVVRRNG-------YRSCYIRPL-----------AWMGAKA 106
Score = 40.6 bits (96), Expect = 3e-04
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 11/76 (14%)
Query: 223 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSA--LRAGLPQFDPEEMIQCLNRLIQID 280
GT +FEG++AY G +FR + ++ R SA LR +P F PEE+ + + +++ +
Sbjct: 32 GTSVFEGIRAYETAKG-PAIFRLKEHVKRFYNSAKVLRMEIP-FAPEELEEAIKEVVRRN 89
Query: 281 QEWVPHTTAASLYIRP 296
S YIRP
Sbjct: 90 G-------YRSCYIRP 98
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.4 bits (109), Expect = 8e-06
Identities = 46/337 (13%), Positives = 99/337 (29%), Gaps = 97/337 (28%)
Query: 1 QFQEIHVQLCSPEQLQPKPEVSQLKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLH 60
+ E +L + Q+ K VS+L+ +L++ P K + +
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR--------------PAKNVLID 156
Query: 61 PAAKVLHYSVELFEGMK----------AYRGVDGHIRMFRPE--MNMDRMNRSALRAGLP 108
G+ +M +N+ N
Sbjct: 157 --------------GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS-------- 194
Query: 109 QFDPEEMIQCLNRLI-QIDQEWVPHTTAASLYIRPTLIGTD----LFEGMKAYRG----V 159
PE +++ L +L+ QID W + +S L + K Y +
Sbjct: 195 ---PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS-KPYENCLLVL 250
Query: 160 D-----GHIRMF----------RPEMNMDRMN-----QSALRAGLPQFDPEEMIQCLNRL 199
F R + D ++ +L P+E+ L +
Sbjct: 251 LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310
Query: 200 IQIDQEWVPHTTAASLYIRP---TLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSA 256
+ + +P L P ++I + +G+ ++ +N D++
Sbjct: 311 LDCRPQDLPR---EVLTTNPRRLSIIAESIRDGLA-------TWDNWK-HVNCDKLTT-I 358
Query: 257 LRAGLPQFDPEEMIQCLNRL-IQIDQEWVPHTTAASL 292
+ + L +P E + +RL + +P + +
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI 395
Score = 38.7 bits (89), Expect = 0.002
Identities = 47/333 (14%), Positives = 106/333 (31%), Gaps = 77/333 (23%)
Query: 7 VQLCSPEQLQPKPE--VSQLKFGTVFTDH----MLQIEFNEQLGGWQAPRVSPLK--YLT 58
+ +C ++Q K + + L + MLQ + Q+ R L
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ-KLLYQIDPNWTSRSDHSSNIKLR 226
Query: 59 LHPAAKVLHYSVELFEGMKAYRG----VD-----GHIRMF----------RPEMNMDRMN 99
+H L L + K Y + F R + D ++
Sbjct: 227 IHSIQAELR---RLLKS-KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS 282
Query: 100 -----RSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRP---TLIGTDLFE 151
+L P+E+ L + + + +P L P ++I + +
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR---EVLTTNPRRLSIIAESIRD 339
Query: 152 GMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLPQFDPEEMIQCLNRL-IQIDQEWVPHT 210
G+ ++ +N D++ + + + L +P E + +RL + +P
Sbjct: 340 GLA-------TWDNWK-HVNCDKLT-TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI 390
Query: 211 TAASLY---------------IRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRS 255
+ ++ + +L+ E ++ + N ++RS
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES--TISIPSIYLELKVKLENEYALHRS 448
Query: 256 ALRA-GLPQ-FDPEEMIQCLNRLIQIDQEWVPH 286
+ +P+ FD +++I +DQ + H
Sbjct: 449 IVDHYNIPKTFDSDDLI-----PPYLDQYFYSH 476
Score = 29.4 bits (65), Expect = 1.8
Identities = 36/255 (14%), Positives = 70/255 (27%), Gaps = 70/255 (27%)
Query: 98 MNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHT----------TAASLYIRPTLIGT 147
M+ P I+ +RL +Q + + A L +RP
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP---AK 151
Query: 148 DLF-EGMK----------AYRGVDGHIRMFRPE--MNMDRMNQSALRAGLPQFDPEEMIQ 194
++ +G+ +M +N+ N PE +++
Sbjct: 152 NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN-----------SPETVLE 200
Query: 195 CLNRLI-QIDQEWVPHTTAASLYIRPTLIGTD----LFEGMKAYRG----VD-----GHI 240
L +L+ QID W + +S L + K Y +
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS-KPYENCLLVLLNVQNAKAW 259
Query: 241 RMF----------RPEMNMDRMN-----RSALRAGLPQFDPEEMIQCLNRLIQIDQEWVP 285
F R + D ++ +L P+E+ L + + + +P
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP 319
Query: 286 HTTAASLYIRPTLIG 300
L P +
Sbjct: 320 R---EVLTTNPRRLS 331
>3lul_A 4-amino-4-deoxychorismate lyase; structural genomi center for
structural genomics, JCSG, protein structure INI PSI-2,
pyridoxal phosphate; HET: MSE LLP; 1.78A {Legionella
pneumophila}
Length = 272
Score = 44.8 bits (107), Expect = 1e-05
Identities = 15/108 (13%), Positives = 30/108 (27%), Gaps = 24/108 (22%)
Query: 55 KYLTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLP-QFDPE 113
+ LFE ++ + M+ +R+ SA + G+P + +
Sbjct: 12 DMTPSFGIDDRIFLGEGLFETIRVNSS-----KPSFAYMHWERLGNSARQLGIPFEISFD 66
Query: 114 EMIQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDG 161
+ + L + IQ D I+ G
Sbjct: 67 DWFEHLIQKIQKDN-------LYHGGIKAI-----------LSGGPAS 96
Score = 41.7 bits (99), Expect = 1e-04
Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 13/77 (16%)
Query: 223 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLP-QFDPEEMIQCLNRLIQIDQ 281
G LFE ++ + M+ +R+ SA + G+P + ++ + L + IQ D
Sbjct: 26 GEGLFETIRVNSS-----KPSFAYMHWERLGNSARQLGIPFEISFDDWFEHLIQKIQKDN 80
Query: 282 EWVPHTTAASLYIRPTL 298
I+ L
Sbjct: 81 -------LYHGGIKAIL 90
>3csw_A BCAT, putative branched-chain-amino-acid aminotransfera; TM0831,
putative branched-chain amino acid aminotransferase;
HET: PLP CIT; 2.15A {Thermotoga maritima MSB8}
Length = 285
Score = 44.1 bits (105), Expect = 2e-05
Identities = 14/88 (15%), Positives = 28/88 (31%), Gaps = 14/88 (15%)
Query: 58 TLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLP-QFDPEEMI 116
+L + ++E ++ Y F + R+ RSA LP +E
Sbjct: 28 SLDFSLFEKSLQGAVYETLRTYSR-----APFAAYKHYTRLKRSADFFNLPLSLSFDEFT 82
Query: 117 QCLNRLIQIDQEWVPHTTAASLYIRPTL 144
+ L ++ + I+ L
Sbjct: 83 KVLKAGADEFKQ--------EVRIKVYL 102
Score = 39.8 bits (94), Expect = 6e-04
Identities = 13/77 (16%), Positives = 25/77 (32%), Gaps = 14/77 (18%)
Query: 223 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLP-QFDPEEMIQCLNRLIQIDQ 281
++E ++ Y F + R+ RSA LP +E + L +
Sbjct: 39 QGAVYETLRTYSR-----APFAAYKHYTRLKRSADFFNLPLSLSFDEFTKVLKAGADEFK 93
Query: 282 EWVPHTTAASLYIRPTL 298
+ + I+ L
Sbjct: 94 Q--------EVRIKVYL 102
Score = 39.5 bits (93), Expect = 8e-04
Identities = 12/77 (15%), Positives = 25/77 (32%), Gaps = 14/77 (18%)
Query: 146 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLP-QFDPEEMIQCLNRLIQIDQ 204
++E ++ Y F + R+ +SA LP +E + L +
Sbjct: 39 QGAVYETLRTYSR-----APFAAYKHYTRLKRSADFFNLPLSLSFDEFTKVLKAGADEFK 93
Query: 205 EWVPHTTAASLYIRPTL 221
+ + I+ L
Sbjct: 94 Q--------EVRIKVYL 102
>2zgi_A Putative 4-amino-4-deoxychorismate lyase; TTHA0621, PLP cofactor,
pyridoxal enzyme, structural NPPSFA; HET: PLP PGE; 1.93A
{Thermus thermophilus}
Length = 246
Score = 39.4 bits (93), Expect = 7e-04
Identities = 16/87 (18%), Positives = 31/87 (35%), Gaps = 13/87 (14%)
Query: 58 TLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQ 117
L L++ +F ++A G E ++ R+ R AL GL E ++
Sbjct: 10 ALALPEAFLYHGASVFTTLRAE---GGRP--LWLEEHLARLRRHALALGLSYPGDEAFLE 64
Query: 118 CLNRLIQIDQEWVPHTTAASLYIRPTL 144
L L++ + + +R
Sbjct: 65 DLEALLRAFPK--------APCLRLRF 83
Score = 36.3 bits (85), Expect = 0.008
Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 13/76 (17%)
Query: 223 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQE 282
G +F ++A G E ++ R+ R AL GL E ++ L L++ +
Sbjct: 21 GASVFTTLRAE---GGRP--LWLEEHLARLRRHALALGLSYPGDEAFLEDLEALLRAFPK 75
Query: 283 WVPHTTAASLYIRPTL 298
+ +R
Sbjct: 76 --------APCLRLRF 83
Score = 35.2 bits (82), Expect = 0.015
Identities = 14/76 (18%), Positives = 28/76 (36%), Gaps = 13/76 (17%)
Query: 146 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLPQFDPEEMIQCLNRLIQIDQE 205
G +F ++A G E ++ R+ + AL GL E ++ L L++ +
Sbjct: 21 GASVFTTLRAE---GGRP--LWLEEHLARLRRHALALGLSYPGDEAFLEDLEALLRAFPK 75
Query: 206 WVPHTTAASLYIRPTL 221
+ +R
Sbjct: 76 --------APCLRLRF 83
>3qqm_A MLR3007 protein; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-biology,
transferase; HET: LLP; 2.30A {Mesorhizobium loti}
Length = 221
Score = 39.2 bits (92), Expect = 8e-04
Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 5/59 (8%)
Query: 66 LHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQ 124
EL E M+ G R + ++ R+ SA G DP+ + + L+ +
Sbjct: 12 DTADFELIETMRWQPGT----SFLRFDRHLARLYGSAAELGFA-CDPQRIAEVLSDALD 65
Score = 37.7 bits (88), Expect = 0.002
Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 5/56 (8%)
Query: 223 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQ 278
+L E M+ G R + ++ R+ SA G DP+ + + L+ +
Sbjct: 15 DFELIETMRWQPGT----SFLRFDRHLARLYGSAAELGFA-CDPQRIAEVLSDALD 65
Score = 36.9 bits (86), Expect = 0.004
Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 5/56 (8%)
Query: 146 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLPQFDPEEMIQCLNRLIQ 201
+L E M+ G R + ++ R+ SA G DP+ + + L+ +
Sbjct: 15 DFELIETMRWQPGT----SFLRFDRHLARLYGSAAELGFA-CDPQRIAEVLSDALD 65
>2xpf_A 4-amino-4-deoxychorismate lyase; para-aminobenzoic acid, folate
biosynthesis; HET: PLP PG4; 1.75A {Pseudomonas
aeruginosa} PDB: 2y4r_A* 2xpf_B*
Length = 292
Score = 39.1 bits (92), Expect = 9e-04
Identities = 16/91 (17%), Positives = 26/91 (28%), Gaps = 21/91 (23%)
Query: 60 HPAAKV------LHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPE 113
PAA++ L Y LFE + G E ++ R+ R +P D
Sbjct: 29 RPAAELSVRDRGLAYGDGLFETLAVRAG-----TPRLLERHLARLEEGCRRLAIP-LDTA 82
Query: 114 EMIQCLNRLIQIDQEWVPHTTAASLYIRPTL 144
+ Q L + +
Sbjct: 83 ALRQELLAFCA------ALGDG---VAKLIV 104
Score = 38.3 bits (90), Expect = 0.002
Identities = 12/76 (15%), Positives = 20/76 (26%), Gaps = 15/76 (19%)
Query: 223 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQE 282
G LFE + G E ++ R+ R +P D + Q L
Sbjct: 44 GDGLFETLAVRAG-----TPRLLERHLARLEEGCRRLAIP-LDTAALRQELLAFCA---- 93
Query: 283 WVPHTTAASLYIRPTL 298
+ +
Sbjct: 94 --ALGDG---VAKLIV 104
Score = 37.2 bits (87), Expect = 0.004
Identities = 12/76 (15%), Positives = 21/76 (27%), Gaps = 15/76 (19%)
Query: 146 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLPQFDPEEMIQCLNRLIQIDQE 205
G LFE + G E ++ R+ + R +P D + Q L
Sbjct: 44 GDGLFETLAVRAG-----TPRLLERHLARLEEGCRRLAIP-LDTAALRQELLAFCA---- 93
Query: 206 WVPHTTAASLYIRPTL 221
+ +
Sbjct: 94 --ALGDG---VAKLIV 104
>3daa_A D-amino acid aminotransferase; pyridoxal phosphate, transaminase;
HET: PDD; 1.90A {Bacillus SP} SCOP: e.17.1.1 PDB:
4daa_A* 3lqs_A* 1daa_A* 2daa_A* 5daa_A* 1g2w_A* 1a0g_A*
2dab_A*
Length = 277
Score = 38.2 bits (90), Expect = 0.002
Identities = 17/88 (19%), Positives = 37/88 (42%), Gaps = 21/88 (23%)
Query: 63 AKV------LHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSA--LRAGLPQFDPEE 114
K+ + ++E +K Y G MF ++DR+ SA +R +P + ++
Sbjct: 15 VKIDKEDRGYQFGDGVYEVVKVYNG-----EMFTVNEHIDRLYASAEKIRITIP-YTKDK 68
Query: 115 MIQCLNRLIQIDQEWVPHTTAASLYIRP 142
Q L+ L++ ++ + +I
Sbjct: 69 FHQLLHELVEKNE-------LNTGHIYF 89
Score = 37.1 bits (87), Expect = 0.004
Identities = 19/98 (19%), Positives = 39/98 (39%), Gaps = 16/98 (16%)
Query: 202 IDQEWVPHTTAA-SLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSA--LR 258
+ + V R G ++E +K Y G MF ++DR+ SA +R
Sbjct: 5 WNDQIVKDEEVKIDKEDRGYQFGDGVYEVVKVYNG-----EMFTVNEHIDRLYASAEKIR 59
Query: 259 AGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRP 296
+P + ++ Q L+ L++ ++ + +I
Sbjct: 60 ITIP-YTKDKFHQLLHELVEKNE-------LNTGHIYF 89
>1i2k_A 4-amino-4-deoxychorismate lyase; pyridoxal phosphate, PABC; HET:
PLP; 1.79A {Escherichia coli} SCOP: e.17.1.1 PDB:
1et0_A* 1i2l_A*
Length = 269
Score = 34.0 bits (79), Expect = 0.041
Identities = 7/73 (9%), Positives = 21/73 (28%), Gaps = 14/73 (19%)
Query: 72 LFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVP 131
F + G ++ ++ R+ + R + ++ Q + L Q
Sbjct: 25 CFTTARVIDG-----KVSLLSAHIQRLQDACQRLMISCDFWPQLEQEMKTLAAEQQNG-- 77
Query: 132 HTTAASLYIRPTL 144
++ +
Sbjct: 78 -------VLKVVI 83
Score = 34.0 bits (79), Expect = 0.041
Identities = 7/73 (9%), Positives = 21/73 (28%), Gaps = 14/73 (19%)
Query: 226 LFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVP 285
F + G ++ ++ R+ + R + ++ Q + L Q
Sbjct: 25 CFTTARVIDG-----KVSLLSAHIQRLQDACQRLMISCDFWPQLEQEMKTLAAEQQNG-- 77
Query: 286 HTTAASLYIRPTL 298
++ +
Sbjct: 78 -------VLKVVI 83
Score = 32.9 bits (76), Expect = 0.087
Identities = 7/73 (9%), Positives = 21/73 (28%), Gaps = 14/73 (19%)
Query: 149 LFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLPQFDPEEMIQCLNRLIQIDQEWVP 208
F + G ++ ++ R+ + R + ++ Q + L Q
Sbjct: 25 CFTTARVIDG-----KVSLLSAHIQRLQDACQRLMISCDFWPQLEQEMKTLAAEQQNG-- 77
Query: 209 HTTAASLYIRPTL 221
++ +
Sbjct: 78 -------VLKVVI 83
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.6 bits (71), Expect = 0.43
Identities = 64/351 (18%), Positives = 98/351 (27%), Gaps = 130/351 (37%)
Query: 22 SQLKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRG 81
SQL+ F + + E P +P + + K L Y L E
Sbjct: 31 SQLQ--EQFNKILPEPT--EGFAADDEP-TTPAELV-----GKFLGYVSSLVE------- 73
Query: 82 VDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIR 141
+ F L L +F E L D H AA L
Sbjct: 74 -PSKVGQFDQ----------VLNLCLTEF--ENCY-----LEGND----IHALAAKLLQE 111
Query: 142 PTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSAL-RA---------------GLP 185
E +K Y + I RP D+ + SAL RA G
Sbjct: 112 NDTTLVKTKELIKNY--ITARIMAKRP---FDKKSNSALFRAVGEGNAQLVAIFGGQGNT 166
Query: 186 Q--FD----------P------EEMIQCLNRLIQ------------ID-QEWV--PHTTA 212
F+ + + L+ LI+ ++ EW+ P T
Sbjct: 167 DDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTP 226
Query: 213 ASLYIR------PTLIG-TDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSAL--RAGL-- 261
Y+ P LIG L A+ V + F P + + A GL
Sbjct: 227 DKDYLLSIPISCP-LIGVIQL-----AHYVVTAKLLGFTPGELRSYL-KGATGHSQGLVT 279
Query: 262 ----------PQFDPEEMIQCLNRLIQI---DQEWVPHTTAASLYIRPTLI 299
F + + + L I E P+T+ + P+++
Sbjct: 280 AVAIAETDSWESFF-VSVRKAITVLFFIGVRCYEAYPNTS-----LPPSIL 324
Score = 27.7 bits (61), Expect = 6.3
Identities = 41/247 (16%), Positives = 64/247 (25%), Gaps = 92/247 (37%)
Query: 90 RPEMNMDRMNRSAL------RAGLPQFDPEEMIQCLN-RLIQIDQEWVPHTTAASLYIRP 142
M MD S RA D ++ I P
Sbjct: 1628 EQGMGMDLYKTSKAAQDVWNRA-----D-NHFKDTYGFSILDIVIN------------NP 1669
Query: 143 TLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLPQFDP--EEMIQCLNRLI 200
+ T F G K R IR N M + G + + +E+ +
Sbjct: 1670 VNL-TIHFGGEKGKR-----IR-----ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYT 1718
Query: 201 QIDQEWVPHTTA----ASLYIRPTLIGTDLFEGMKAYRGVD-------GHIRMFRPEMNM 249
++ + T A L+ FE +K+ +G+ GH
Sbjct: 1719 FRSEKGLLSATQFTQPALT-----LMEKAAFEDLKS-KGLIPADATFAGH---------- 1762
Query: 250 DRMNRS-----AL--RAGLPQFDPEEMIQCLNRLI----QIDQEWVP-HTTAASLY---- 293
S AL A + E ++ ++ Q VP S Y
Sbjct: 1763 -----SLGEYAALASLADV--MSIESLV----EVVFYRGMTMQVAVPRDELGRSNYGMIA 1811
Query: 294 IRPTLIG 300
I P +
Sbjct: 1812 INPGRVA 1818
Score = 27.3 bits (60), Expect = 7.7
Identities = 33/200 (16%), Positives = 56/200 (28%), Gaps = 67/200 (33%)
Query: 50 RVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQ 109
+P LT+H + E + M VDG ++ + ++ + S
Sbjct: 1666 INNP-VNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRS--- 1721
Query: 110 FDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVD-------GH 162
+ + L+ Q Q P T FE +K+ +G+ GH
Sbjct: 1722 --EKGL---LS-ATQFTQ---PALTLMEKAA---------FEDLKS-KGLIPADATFAGH 1762
Query: 163 IRMFRPEMNMDRMNQS-----AL--RAGLPQFDPEEMIQCLNRLI----QIDQEWVP-HT 210
S AL A + E ++ ++ Q VP
Sbjct: 1763 ---------------SLGEYAALASLADV--MSIESLV----EVVFYRGMTMQVAVPRDE 1801
Query: 211 TAASLY----IRPTLIGTDL 226
S Y I P +
Sbjct: 1802 LGRSNYGMIAINPGRVAASF 1821
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex,
oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus
horikoshii}
Length = 382
Score = 30.2 bits (69), Expect = 0.76
Identities = 13/106 (12%), Positives = 31/106 (29%), Gaps = 23/106 (21%)
Query: 63 AKVLHYSVELFEGMKAYRGVD----GHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQC 118
+V+ SVEL++ G G++ + + + R+
Sbjct: 61 VRVMKRSVELWKKYSEEYGFSFKQTGYLFLLYDDEEVKTFKRNI---------------E 105
Query: 119 LNRLIQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIR 164
+ + + + A + P L+ ++ DG
Sbjct: 106 IQNKFGVPTKLITPEEAKEIV--P-LLDISEVIA-ASWNPTDGKAD 147
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme,
electron transfer, folate-ME enzyme, oxidoreductase;
HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia}
PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B*
3ada_B*
Length = 405
Score = 29.9 bits (68), Expect = 0.99
Identities = 16/112 (14%), Positives = 31/112 (27%), Gaps = 28/112 (25%)
Query: 63 AKVLHYSVELFEGMKAYRGVD------GHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMI 116
A + S++L+E + D G + + ++ R
Sbjct: 79 AGIYEKSLKLWEQLPEDLEYDFLFSQRGVLNLAHTLGDVRESVRRV-------------- 124
Query: 117 QCLNRLIQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGV----DGHIR 164
N+L +D EW+ + P +I T G +
Sbjct: 125 -EANKLNGVDAEWLDPSQVKEAC--P-IINTSDDIRYPVMGATWQPRAGIAK 172
>3nqb_A Adenine deaminase 2; PSI-II, structural genomics, protein structure
initiative, N SGX research center for structural
genomics, nysgxrc; 2.21A {Agrobacterium tumefaciens}
PDB: 3t81_A 3t8l_A
Length = 608
Score = 27.7 bits (61), Expect = 5.4
Identities = 27/203 (13%), Positives = 57/203 (28%), Gaps = 31/203 (15%)
Query: 81 GVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASL-- 138
GVDG + N+ + +P E + + + +
Sbjct: 132 GVDGVRWAAKAIENLPLRAILLAPSCVPSAPGLERGGADFDAAILA-DLLSWPEIGGIAE 190
Query: 139 --YIRPTLIGTD-----LFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLPQFDPEE 191
+R + + G+ A + V GH R + ++ + + + E+
Sbjct: 191 IMNMRGVIERDPRMSGIVQAGLAAEKLVCGHARGLKNAD-LNAFMAAGVSSDHELVSGED 249
Query: 192 MIQCLNRLIQID---------QEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRM 242
++ L + I+ E+V + + TD D
Sbjct: 250 LMAKLRAGLTIELRGSHDHLLPEFVAALNTLGHLPQTVTLCTD-----------DVFPDD 298
Query: 243 FRPEMNMDRMNRSALRAGLPQFD 265
+D + R +R GL
Sbjct: 299 LLQGGGLDDVVRRLVRYGLKPEW 321
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.139 0.427
Gapped
Lambda K H
0.267 0.0767 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,958,027
Number of extensions: 301083
Number of successful extensions: 1317
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1279
Number of HSP's successfully gapped: 59
Length of query: 302
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 209
Effective length of database: 4,105,140
Effective search space: 857974260
Effective search space used: 857974260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 57 (25.7 bits)